=============================================================================== About this build: this rebuild has been done as part of reproduce.debian.net where we aim to reproduce Debian binary packages distributed via ftp.debian.org, by rebuilding using the exact same packages as the original build on the buildds, as described in the relevant .buildinfo file from buildinfos.debian.net. For more information please go to https://reproduce.debian.net or join #debian-reproducible on irc.debian.org =============================================================================== Preparing download of sources for /srv/rebuilderd/tmp/rebuilderd1gR4oS/inputs/cctbx_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.buildinfo Source: cctbx Version: 2026.9+ds2+~3.30.1+ds1-1 rebuilderd-worker node: loong64-02 +------------------------------------------------------------------------------+ | Downloading sources Fri, 06 Nov 2026 05:28:54 +0000 | +------------------------------------------------------------------------------+ Get:1 https://deb.debian.org/debian trixie InRelease [140 kB] Get:2 https://deb.debian.org/debian-security trixie-security InRelease [43.4 kB] Get:3 https://deb.debian.org/debian trixie-updates InRelease [47.3 kB] Get:4 https://deb.debian.org/debian trixie-proposed-updates InRelease [57.7 kB] Get:5 https://deb.debian.org/debian trixie-backports InRelease [54.0 kB] Get:6 https://deb.debian.org/debian forky InRelease [151 kB] Get:7 https://deb.debian.org/debian sid InRelease [193 kB] Get:8 https://deb.debian.org/debian experimental InRelease [91.7 kB] Get:9 https://deb.debian.org/debian trixie/main Sources [10.5 MB] Get:10 https://deb.debian.org/debian trixie/non-free-firmware Sources [6,552 B] Get:11 https://deb.debian.org/debian-security trixie-security/main Sources [261 kB] Get:12 https://deb.debian.org/debian-security trixie-security/non-free-firmware Sources [696 B] Get:13 https://deb.debian.org/debian trixie-updates/main Sources [1,400 B] Get:14 https://deb.debian.org/debian trixie-proposed-updates/main Sources [171 kB] Get:15 https://deb.debian.org/debian trixie-backports/non-free-firmware Sources [3,520 B] Get:16 https://deb.debian.org/debian trixie-backports/main Sources [338 kB] Get:17 https://deb.debian.org/debian forky/main Sources [11.4 MB] Get:18 https://deb.debian.org/debian forky/non-free-firmware Sources [7,980 B] Get:19 https://deb.debian.org/debian sid/main Sources [12.1 MB] Get:20 https://deb.debian.org/debian sid/non-free-firmware Sources [10.7 kB] Get:21 https://deb.debian.org/debian experimental/non-free-firmware Sources [2,568 B] Get:22 https://deb.debian.org/debian experimental/main Sources [365 kB] Fetched 36.0 MB in 2min 50s (212 kB/s) Reading package lists... 'https://deb.debian.org/debian/pool/main/c/cctbx/cctbx_2026.9%2bds2%2b%7e3.30.1%2bds1-1.dsc' cctbx_2026.9+ds2+~3.30.1+ds1-1.dsc 4191 SHA256:5fb7dd936098afc4358de780db7a6fd4fc9d584dd7f03781e9b1236885ecd5d7 'https://deb.debian.org/debian/pool/main/c/cctbx/cctbx_2026.9%2bds2%2b%7e3.30.1%2bds1.orig-dxtbx.tar.xz' cctbx_2026.9+ds2+~3.30.1+ds1.orig-dxtbx.tar.xz 402668 SHA256:d41002a649c18fef3b687d0ecb41ce6e399c3f168f32af35b472ea5bacfc20c2 'https://deb.debian.org/debian/pool/main/c/cctbx/cctbx_2026.9%2bds2%2b%7e3.30.1%2bds1.orig.tar.xz' cctbx_2026.9+ds2+~3.30.1+ds1.orig.tar.xz 106529112 SHA256:e0b7ce095abc06e2bf704ffcb3b781d86fd9dac548cbb86e8998ee6652c2ba1e 'https://deb.debian.org/debian/pool/main/c/cctbx/cctbx_2026.9%2bds2%2b%7e3.30.1%2bds1-1.debian.tar.xz' cctbx_2026.9+ds2+~3.30.1+ds1-1.debian.tar.xz 420388 SHA256:9b6316b514f4be02ecdf7c5092a50f2d455ddbc85cca0c12d510eb8540f77d97 d41002a649c18fef3b687d0ecb41ce6e399c3f168f32af35b472ea5bacfc20c2 cctbx_2026.9+ds2+~3.30.1+ds1.orig-dxtbx.tar.xz e0b7ce095abc06e2bf704ffcb3b781d86fd9dac548cbb86e8998ee6652c2ba1e cctbx_2026.9+ds2+~3.30.1+ds1.orig.tar.xz 9b6316b514f4be02ecdf7c5092a50f2d455ddbc85cca0c12d510eb8540f77d97 cctbx_2026.9+ds2+~3.30.1+ds1-1.debian.tar.xz 5fb7dd936098afc4358de780db7a6fd4fc9d584dd7f03781e9b1236885ecd5d7 cctbx_2026.9+ds2+~3.30.1+ds1-1.dsc +------------------------------------------------------------------------------+ | Calling debrebuild Fri, 06 Nov 2026 05:41:25 +0000 | +------------------------------------------------------------------------------+ Rebuilding cctbx=2026.9+ds2+~3.30.1+ds1-1 in /srv/rebuilderd/tmp/rebuilderd1gR4oS/inputs now. + /usr/bin/debrebuild --buildresult=/srv/rebuilderd/tmp/rebuilderd1gR4oS/out --builder=sbuild+unshare --cache=/srv/rebuilderd/cache -- /srv/rebuilderd/tmp/rebuilderd1gR4oS/inputs/cctbx_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.buildinfo /srv/rebuilderd/tmp/rebuilderd1gR4oS/inputs/cctbx_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.buildinfo contains a GPG signature which has NOT been validated Using defined Build-Path: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 I: verifying dsc... successful! Get:1 http://deb.debian.org/debian unstable InRelease [193 kB] Get:2 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable InRelease [193 kB] Get:3 http://deb.debian.org/debian unstable/main loong64 Packages [10.4 MB] Get:4 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 Packages [10.4 MB] Fetched 21.2 MB in 20s (1054 kB/s) Reading package lists... W: http://snapshot.debian.org/archive/debian/20261029T082808Z/dists/unstable/InRelease: Loading /etc/apt/trusted.gpg from deprecated option Dir::Etc::Trusted Get:1 http://deb.debian.org/debian unstable/main loong64 libabsl20260526 loong64 20260526.0-2+b1 [536 kB] Get:2 http://deb.debian.org/debian unstable/main loong64 libacl1 loong64 2.4.0-1 [37.9 kB] Get:3 http://deb.debian.org/debian unstable/main loong64 adwaita-icon-theme all 51.0-1 [493 kB] Get:4 http://deb.debian.org/debian unstable/main loong64 libasound2-data all 1.2.16.1-2 [19.4 kB] Get:5 http://deb.debian.org/debian unstable/main loong64 libasound2t64 loong64 1.2.16.1-2 [379 kB] Get:6 http://deb.debian.org/debian unstable/main loong64 libann-cctbx-dev loong64 1.1.2+doc-9+b1 [83.4 kB] Get:7 http://deb.debian.org/debian unstable/main loong64 libann-cctbx0 loong64 1.1.2+doc-9+b1 [32.1 kB] Get:8 http://deb.debian.org/debian unstable/main loong64 libaom3 loong64 3.14.1-1 [1296 kB] Get:9 http://deb.debian.org/debian unstable/main loong64 libapparmor1 loong64 5.0.2-5 [38.8 kB] Get:10 http://deb.debian.org/debian unstable/main loong64 architecture-properties loong64 0.2.6+b2 [2640 B] Get:11 http://deb.debian.org/debian unstable/main loong64 at-spi2-common all 2.62.1-1 [171 kB] Get:12 http://deb.debian.org/debian unstable/main loong64 autoconf all 2.73-2 [516 kB] Get:13 http://deb.debian.org/debian unstable/main loong64 automake all 1:1.19-3 [892 kB] Get:14 http://deb.debian.org/debian unstable/main loong64 autotools-dev all 20240727.1+nmu1 [60.0 kB] Get:15 http://deb.debian.org/debian unstable/main loong64 base-files loong64 14.2 [88.0 kB] Get:16 http://deb.debian.org/debian unstable/main loong64 base-passwd loong64 3.6.8+b1 [54.7 kB] Get:17 http://deb.debian.org/debian unstable/main loong64 bash loong64 5.3-4 [1551 kB] Get:18 http://deb.debian.org/debian unstable/main loong64 binutils loong64 2.47.50.20261021-1 [70.6 kB] Get:19 http://deb.debian.org/debian unstable/main loong64 binutils-common loong64 2.47.50.20261021-1 [2687 kB] Get:20 http://deb.debian.org/debian unstable/main loong64 binutils-loongarch64-linux-gnu loong64 2.47.50.20261021-1 [855 kB] Get:21 http://deb.debian.org/debian unstable/main loong64 bubblewrap loong64 0.13.1-1 [54.5 kB] Get:22 http://deb.debian.org/debian unstable/main loong64 build-essential loong64 12.12+b1 [4900 B] Get:23 http://deb.debian.org/debian unstable/main loong64 bzip2 loong64 1.0.8-6+b2 [40.3 kB] Get:24 http://deb.debian.org/debian unstable/main loong64 ca-certificates all 20260816+nmu1 [134 kB] Get:25 http://deb.debian.org/debian unstable/main loong64 dash loong64 0.5.12-12+b1 [101 kB] Get:26 http://deb.debian.org/debian unstable/main loong64 dbus loong64 1.16.2-8 [68.0 kB] Get:27 http://deb.debian.org/debian unstable/main loong64 dbus-bin loong64 1.16.2-8 [75.6 kB] Get:28 http://deb.debian.org/debian unstable/main loong64 dbus-daemon loong64 1.16.2-8 [154 kB] Get:29 http://deb.debian.org/debian unstable/main loong64 dbus-session-bus-common all 1.16.2-8 [49.2 kB] Get:30 http://deb.debian.org/debian unstable/main loong64 dbus-system-bus-common all 1.16.2-8 [50.2 kB] Get:31 http://deb.debian.org/debian unstable/main loong64 dbus-user-session loong64 1.16.2-8 [49.3 kB] Get:32 http://deb.debian.org/debian unstable/main loong64 dconf-gsettings-backend loong64 51.0-2 [29.0 kB] Get:33 http://deb.debian.org/debian unstable/main loong64 dconf-service loong64 51.0-2 [34.0 kB] Get:34 http://deb.debian.org/debian unstable/main loong64 debconf all 1.5.92 [123 kB] Get:35 http://deb.debian.org/debian unstable/main loong64 debhelper all 14.5 [944 kB] Get:36 http://deb.debian.org/debian unstable/main loong64 debianutils loong64 5.24 [93.1 kB] Get:37 http://deb.debian.org/debian unstable/main loong64 dh-autoreconf all 23 [12.7 kB] Get:38 http://deb.debian.org/debian unstable/main loong64 dh-exec loong64 0.31+b2 [25.7 kB] Get:39 http://deb.debian.org/debian unstable/main loong64 dh-python all 7.20261030 [115 kB] Get:40 http://deb.debian.org/debian unstable/main loong64 diffutils loong64 1:3.12-1+b1 [405 kB] Get:41 http://deb.debian.org/debian unstable/main loong64 dpkg loong64 1.23.11 [1196 kB] Get:42 http://deb.debian.org/debian unstable/main loong64 dpkg-dev all 1.23.11 [1005 kB] Get:43 http://deb.debian.org/debian unstable/main loong64 dwz loong64 0.17-1 [109 kB] Get:44 http://deb.debian.org/debian unstable/main loong64 comerr-dev loong64 2.1-1.47.4-1+b2 [54.4 kB] Get:45 http://deb.debian.org/debian unstable/main loong64 fftw-dev loong64 2.1.5-8 [293 kB] Get:46 http://deb.debian.org/debian unstable/main loong64 fftw2 loong64 2.1.5-8 [208 kB] Get:47 http://deb.debian.org/debian unstable/main loong64 file loong64 1:5.47-4 [43.2 kB] Get:48 http://deb.debian.org/debian unstable/main loong64 findutils loong64 4.11.0-3 [784 kB] Get:49 http://deb.debian.org/debian unstable/main loong64 fontconfig loong64 2.17.1-5 [191 kB] Get:50 http://deb.debian.org/debian unstable/main loong64 fontconfig-config loong64 2.17.1-5 [56.1 kB] Get:51 http://deb.debian.org/debian unstable/main loong64 fonts-dejavu-core all 2.37-9 [840 kB] Get:52 http://deb.debian.org/debian unstable/main loong64 fonts-dejavu-extra all 2.37-9 [1791 kB] Get:53 http://deb.debian.org/debian unstable/main loong64 fonts-dejavu-mono all 2.37-9 [488 kB] Get:54 http://deb.debian.org/debian unstable/main loong64 fonts-font-awesome all 7.3.0+dfsg-1 [677 kB] Get:55 http://deb.debian.org/debian unstable/main loong64 fonts-font-awesome-legacy all 6-4 [1547 kB] Get:56 http://deb.debian.org/debian unstable/main loong64 fonts-lato all 2.015-1 [2780 kB] Get:57 http://deb.debian.org/debian unstable/main loong64 fonts-roboto-slab all 2.002+20231012+ds-1 [1159 kB] Get:58 http://deb.debian.org/debian unstable/main loong64 fonts-urw-base35 all 20200910-9 [10.8 MB] Get:59 http://deb.debian.org/debian unstable/main loong64 cpp-16 loong64 16.2.0-4 [1284 B] Get:60 http://deb.debian.org/debian unstable/main loong64 cpp-16-loongarch64-linux-gnu loong64 16.2.0-4 [10.8 MB] Get:61 http://deb.debian.org/debian unstable/main loong64 g++-16 loong64 16.2.0-4 [36.4 kB] Get:62 http://deb.debian.org/debian unstable/main loong64 g++-16-loongarch64-linux-gnu loong64 16.2.0-4 [12.0 MB] Get:63 http://deb.debian.org/debian unstable/main loong64 gcc-16 loong64 16.2.0-4 [530 kB] Get:64 http://deb.debian.org/debian unstable/main loong64 gcc-16-base loong64 16.2.0-4 [39.3 kB] Get:65 http://deb.debian.org/debian unstable/main loong64 gcc-16-loongarch64-linux-gnu loong64 16.2.0-4 [20.7 MB] Get:66 http://deb.debian.org/debian unstable/main loong64 libasan8 loong64 16.2.0-4 [2833 kB] Get:67 http://deb.debian.org/debian unstable/main loong64 cpp loong64 4:16.1.0-3 [1580 B] Get:68 http://deb.debian.org/debian unstable/main loong64 cpp-loongarch64-linux-gnu loong64 4:16.1.0-3 [4472 B] Get:69 http://deb.debian.org/debian unstable/main loong64 g++ loong64 4:16.1.0-3 [1336 B] Get:70 http://deb.debian.org/debian unstable/main loong64 g++-loongarch64-linux-gnu loong64 4:16.1.0-3 [1204 B] Get:71 http://deb.debian.org/debian unstable/main loong64 gcc loong64 4:16.1.0-3 [5148 B] Get:72 http://deb.debian.org/debian unstable/main loong64 gcc-loongarch64-linux-gnu loong64 4:16.1.0-3 [1444 B] Get:73 http://deb.debian.org/debian unstable/main loong64 autopoint all 1.0-5 [820 kB] Get:74 http://deb.debian.org/debian unstable/main loong64 gettext loong64 1.0-5 [2622 kB] Get:75 http://deb.debian.org/debian unstable/main loong64 gettext-base loong64 1.0-5 [331 kB] Get:76 http://deb.debian.org/debian unstable/main loong64 glycin-loaders loong64 2.2.3+ds-1 [2857 kB] Get:77 http://deb.debian.org/debian unstable/main loong64 glycin-thumbnailers loong64 2.2.3+ds-1 [201 kB] Get:78 http://deb.debian.org/debian unstable/main loong64 grep loong64 3.12-1+b1 [445 kB] Get:79 http://deb.debian.org/debian unstable/main loong64 groff-base loong64 1.24.2-2 [1314 kB] Get:80 http://deb.debian.org/debian unstable/main loong64 gsettings-desktop-schemas all 51.0-2 [846 kB] Get:81 http://deb.debian.org/debian unstable/main loong64 gtk-update-icon-cache loong64 4.24.1+ds-1 [41.3 kB] Get:82 http://deb.debian.org/debian unstable/main loong64 gzip loong64 1.14-1 [143 kB] Get:83 http://deb.debian.org/debian unstable/main loong64 hdf5-helpers loong64 2.2.0+repack-6 [27.9 kB] Get:84 http://deb.debian.org/debian unstable/main loong64 hicolor-icon-theme all 0.18-2 [11.8 kB] Get:85 http://deb.debian.org/debian unstable/main loong64 hostname loong64 3.25+b1 [11.2 kB] Get:86 http://deb.debian.org/debian unstable/main loong64 init-system-helpers all 1.69+nmu3 [37.3 kB] Get:87 http://deb.debian.org/debian unstable/main loong64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:88 http://deb.debian.org/debian unstable/main loong64 jq loong64 1.8.2-1 [87.6 kB] Get:89 http://deb.debian.org/debian unstable/main loong64 krb5-multidev loong64 1.22.1-3 [125 kB] Get:90 http://deb.debian.org/debian unstable/main loong64 libaec-dev loong64 1.1.7-1 [50.4 kB] Get:91 http://deb.debian.org/debian unstable/main loong64 libaec0 loong64 1.1.7-1 [22.5 kB] Get:92 http://deb.debian.org/debian unstable/main loong64 libantlr3c-3.4-0 loong64 3.4+dfsg-4+b3 [51.2 kB] Get:93 http://deb.debian.org/debian unstable/main loong64 libantlr3c-dev loong64 3.4+dfsg-4+b3 [215 kB] Get:94 http://deb.debian.org/debian unstable/main loong64 libarchive-zip-perl all 1.68-1 [104 kB] Get:95 http://deb.debian.org/debian unstable/main loong64 libasyncns0 loong64 0.8-8 [12.5 kB] Get:96 http://deb.debian.org/debian unstable/main loong64 fonts-lyx all 2.5.3-2 [190 kB] Get:97 http://deb.debian.org/debian unstable/main loong64 ibverbs-providers loong64 65.0-1.1 [393 kB] Get:98 http://deb.debian.org/debian unstable/main loong64 dh-strip-nondeterminism all 1.15.1-1 [6020 B] Get:99 http://deb.debian.org/debian unstable/main loong64 bsdextrautils loong64 2.42.4-1 [103 kB] Get:100 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 coreutils loong64 9.10-1 [3128 kB] Fetched 97.6 MB in 1s (104 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/gzip_1.14-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/gsettings-desktop-schemas_51.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/libaom3_3.14.1-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/init-system-helpers_1.69+nmu3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/libarchive-zip-perl_1.68-1_all.deb' dpkg-name: info: moved 'cpp_4%3a16.1.0-3_loong64.deb' to '/srv/rebuilderd/tmp/tmpz9q65sbd/cpp_16.1.0-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/gettext-base_1.0-5_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/fftw2_2.1.5-8_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/dpkg_1.23.11_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/jq_1.8.2-1_loong64.deb' dpkg-name: info: moved 'g++_4%3a16.1.0-3_loong64.deb' to '/srv/rebuilderd/tmp/tmpz9q65sbd/g++_16.1.0-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/dash_0.5.12-12+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/g++-16-loongarch64-linux-gnu_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/libantlr3c-dev_3.4+dfsg-4+b3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/libasound2t64_1.2.16.1-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/dconf-service_51.0-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/glycin-thumbnailers_2.2.3+ds-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/gcc-16-loongarch64-linux-gnu_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/libantlr3c-3.4-0_3.4+dfsg-4+b3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/gettext_1.0-5_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/autopoint_1.0-5_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/libasound2-data_1.2.16.1-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/architecture-properties_0.2.6+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/bsdextrautils_2.42.4-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/gcc-16-base_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/dbus-user-session_1.16.2-8_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/dh-python_7.20261030_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/fonts-dejavu-extra_2.37-9_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/ca-certificates_20260816+nmu1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/fonts-lyx_2.5.3-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/fontconfig_2.17.1-5_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/libapparmor1_5.0.2-5_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/dh-autoreconf_23_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/cpp-16-loongarch64-linux-gnu_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/fonts-roboto-slab_2.002+20231012+ds-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/base-passwd_3.6.8+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/dconf-gsettings-backend_51.0-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/adwaita-icon-theme_51.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/fftw-dev_2.1.5-8_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/fonts-font-awesome-legacy_6-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/bzip2_1.0.8-6+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/bash_5.3-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/groff-base_1.24.2-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/dh-exec_0.31+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/cpp-16_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/binutils-loongarch64-linux-gnu_2.47.50.20261021-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/dpkg-dev_1.23.11_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/gtk-update-icon-cache_4.24.1+ds-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/libasyncns0_0.8-8_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/hicolor-icon-theme_0.18-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/debconf_1.5.92_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/glycin-loaders_2.2.3+ds-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/bubblewrap_0.13.1-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/base-files_14.2_loong64.deb' dpkg-name: info: moved 'gcc_4%3a16.1.0-3_loong64.deb' to '/srv/rebuilderd/tmp/tmpz9q65sbd/gcc_16.1.0-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/libacl1_2.4.0-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/g++-16_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/debianutils_5.24_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/dbus_1.16.2-8_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/libasan8_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/at-spi2-common_2.62.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/intltool-debian_0.35.0+20060710.6_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/hostname_3.25+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/fonts-dejavu-core_2.37-9_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/fonts-dejavu-mono_2.37-9_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/autotools-dev_20240727.1+nmu1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/libaec-dev_1.1.7-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/comerr-dev_2.1-1.47.4-1+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/libann-cctbx-dev_1.1.2+doc-9+b1_loong64.deb' dpkg-name: info: moved 'automake_1%3a1.19-3_all.deb' to '/srv/rebuilderd/tmp/tmpz9q65sbd/automake_1.19-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/hdf5-helpers_2.2.0+repack-6_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/dbus-session-bus-common_1.16.2-8_all.deb' dpkg-name: info: moved 'diffutils_1%3a3.12-1+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpz9q65sbd/diffutils_3.12-1+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/dbus-bin_1.16.2-8_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/autoconf_2.73-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/dwz_0.17-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/build-essential_12.12+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/coreutils_9.10-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/dbus-daemon_1.16.2-8_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/libann-cctbx0_1.1.2+doc-9+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/fontconfig-config_2.17.1-5_loong64.deb' dpkg-name: info: moved 'g++-loongarch64-linux-gnu_4%3a16.1.0-3_loong64.deb' to '/srv/rebuilderd/tmp/tmpz9q65sbd/g++-loongarch64-linux-gnu_16.1.0-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/krb5-multidev_1.22.1-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/libaec0_1.1.7-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/dh-strip-nondeterminism_1.15.1-1_all.deb' dpkg-name: info: moved 'cpp-loongarch64-linux-gnu_4%3a16.1.0-3_loong64.deb' to '/srv/rebuilderd/tmp/tmpz9q65sbd/cpp-loongarch64-linux-gnu_16.1.0-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/binutils-common_2.47.50.20261021-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/fonts-lato_2.015-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/fonts-font-awesome_7.3.0+dfsg-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/fonts-urw-base35_20200910-9_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/binutils_2.47.50.20261021-1_loong64.deb' dpkg-name: info: moved 'gcc-loongarch64-linux-gnu_4%3a16.1.0-3_loong64.deb' to '/srv/rebuilderd/tmp/tmpz9q65sbd/gcc-loongarch64-linux-gnu_16.1.0-3_loong64.deb' dpkg-name: info: moved 'file_1%3a5.47-4_loong64.deb' to '/srv/rebuilderd/tmp/tmpz9q65sbd/file_5.47-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/findutils_4.11.0-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/dbus-system-bus-common_1.16.2-8_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/debhelper_14.5_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/gcc-16_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/ibverbs-providers_65.0-1.1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/grep_3.12-1+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpz9q65sbd/libabsl20260526_20260526.0-2+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libatk-bridge2.0-0t64 loong64 2.62.1-1 [64.9 kB] Get:2 http://deb.debian.org/debian unstable/main loong64 libatk1.0-0t64 loong64 2.62.1-1 [50.7 kB] Get:3 http://deb.debian.org/debian unstable/main loong64 libatspi2.0-0t64 loong64 2.62.1-1 [80.6 kB] Get:4 http://deb.debian.org/debian unstable/main loong64 libattr1 loong64 1:2.6.0-1 [24.8 kB] Get:5 http://deb.debian.org/debian unstable/main loong64 libaudit-common all 1:4.1.2-1 [14.3 kB] Get:6 http://deb.debian.org/debian unstable/main loong64 libaudit1 loong64 1:4.1.2-1+b2 [60.4 kB] Get:7 http://deb.debian.org/debian unstable/main loong64 libavahi-client3 loong64 0.8-18 [48.5 kB] Get:8 http://deb.debian.org/debian unstable/main loong64 libavahi-common-data loong64 0.8-18 [113 kB] Get:9 http://deb.debian.org/debian unstable/main loong64 libavahi-common3 loong64 0.8-18 [44.7 kB] Get:10 http://deb.debian.org/debian unstable/main loong64 libbinutils loong64 2.47.50.20261021-1 [499 kB] Get:11 http://deb.debian.org/debian unstable/main loong64 libctf-nobfd0 loong64 2.47.50.20261021-1 [165 kB] Get:12 http://deb.debian.org/debian unstable/main loong64 libctf0 loong64 2.47.50.20261021-1 [98.2 kB] Get:13 http://deb.debian.org/debian unstable/main loong64 libboost-dev loong64 1.92.0.1 [3260 B] Get:14 http://deb.debian.org/debian unstable/main loong64 libboost-numpy-dev loong64 1.92.0.1 [3092 B] Get:15 http://deb.debian.org/debian unstable/main loong64 libboost-python-dev loong64 1.92.0.1 [3352 B] Get:16 http://deb.debian.org/debian unstable/main loong64 libboost-thread-dev loong64 1.92.0.1 [3080 B] Get:17 http://deb.debian.org/debian unstable/main loong64 libboost-timer-dev loong64 1.92.0.1 [3180 B] Get:18 http://deb.debian.org/debian unstable/main loong64 libboost-atomic1.92-dev loong64 1.92.0-4+b1 [240 kB] Get:19 http://deb.debian.org/debian unstable/main loong64 libboost-atomic1.92.0 loong64 1.92.0-4+b1 [228 kB] Get:20 http://deb.debian.org/debian unstable/main loong64 libboost-chrono1.92-dev loong64 1.92.0-4+b1 [340 kB] Get:21 http://deb.debian.org/debian unstable/main loong64 libboost-chrono1.92.0 loong64 1.92.0-4+b1 [237 kB] Get:22 http://deb.debian.org/debian unstable/main loong64 libboost-container1.92-dev loong64 1.92.0-4+b1 [304 kB] Get:23 http://deb.debian.org/debian unstable/main loong64 libboost-container1.92.0 loong64 1.92.0-4+b1 [250 kB] Get:24 http://deb.debian.org/debian unstable/main loong64 libboost-date-time1.92-dev loong64 1.92.0-4+b1 [234 kB] Get:25 http://deb.debian.org/debian unstable/main loong64 libboost-date-time1.92.0 loong64 1.92.0-4+b1 [224 kB] Get:26 http://deb.debian.org/debian unstable/main loong64 libboost-exception1.92-dev loong64 1.92.0-4+b1 [226 kB] Get:27 http://deb.debian.org/debian unstable/main loong64 libboost-graph1.92-dev loong64 1.92.0-4+b1 [814 kB] Get:28 http://deb.debian.org/debian unstable/main loong64 libboost-graph1.92.0 loong64 1.92.0-4+b1 [350 kB] Get:29 http://deb.debian.org/debian unstable/main loong64 libboost-math1.92-dev loong64 1.92.0-4+b1 [1311 kB] Get:30 http://deb.debian.org/debian unstable/main loong64 libboost-math1.92.0 loong64 1.92.0-4+b1 [544 kB] Get:31 http://deb.debian.org/debian unstable/main loong64 libboost-numpy1.92-dev loong64 1.92.0-4+b1 [291 kB] Get:32 http://deb.debian.org/debian unstable/main loong64 libboost-numpy1.92.0 loong64 1.92.0-4+b1 [236 kB] Get:33 http://deb.debian.org/debian unstable/main loong64 libboost-python1.92-dev loong64 1.92.0-4+b1 [659 kB] Get:34 http://deb.debian.org/debian unstable/main loong64 libboost-python1.92.0 loong64 1.92.0-4+b1 [299 kB] Get:35 http://deb.debian.org/debian unstable/main loong64 libboost-random1.92-dev loong64 1.92.0-4+b1 [277 kB] Get:36 http://deb.debian.org/debian unstable/main loong64 libboost-random1.92.0 loong64 1.92.0-4+b1 [235 kB] Get:37 http://deb.debian.org/debian unstable/main loong64 libboost-regex1.92-dev loong64 1.92.0-4+b1 [638 kB] Get:38 http://deb.debian.org/debian unstable/main loong64 libboost-regex1.92.0 loong64 1.92.0-4+b1 [314 kB] Get:39 http://deb.debian.org/debian unstable/main loong64 libboost-serialization1.92-dev loong64 1.92.0-4+b1 [791 kB] Get:40 http://deb.debian.org/debian unstable/main loong64 libboost-serialization1.92.0 loong64 1.92.0-4+b1 [330 kB] Get:41 http://deb.debian.org/debian unstable/main loong64 libboost-test1.92-dev loong64 1.92.0-4+b1 [2633 kB] Get:42 http://deb.debian.org/debian unstable/main loong64 libboost-test1.92.0 loong64 1.92.0-4+b1 [436 kB] Get:43 http://deb.debian.org/debian unstable/main loong64 libboost-thread1.92-dev loong64 1.92.0-4+b1 [378 kB] Get:44 http://deb.debian.org/debian unstable/main loong64 libboost-thread1.92.0 loong64 1.92.0-4+b1 [257 kB] Get:45 http://deb.debian.org/debian unstable/main loong64 libboost-timer1.92-dev loong64 1.92.0-4+b1 [239 kB] Get:46 http://deb.debian.org/debian unstable/main loong64 libboost-timer1.92.0 loong64 1.92.0-4+b1 [228 kB] Get:47 http://deb.debian.org/debian unstable/main loong64 libboost1.92-dev loong64 1.92.0-4+b1 [11.6 MB] Get:48 http://deb.debian.org/debian unstable/main loong64 libbrotli-dev loong64 1.2.0-4.1 [698 kB] Get:49 http://deb.debian.org/debian unstable/main loong64 libbrotli1 loong64 1.2.0-4.1 [312 kB] Get:50 http://deb.debian.org/debian unstable/main loong64 libbz2-1.0 loong64 1.0.8-6+b2 [39.8 kB] Get:51 http://deb.debian.org/debian unstable/main loong64 libcairo-gobject2 loong64 1.18.4-3+b1 [129 kB] Get:52 http://deb.debian.org/debian unstable/main loong64 libcairo2 loong64 1.18.4-3+b1 [530 kB] Get:53 http://deb.debian.org/debian unstable/main loong64 libcbf-dev loong64 0.9.7+dfsg1-5.1+b4 [1207 kB] Get:54 http://deb.debian.org/debian unstable/main loong64 libcbf1t64 loong64 0.9.7+dfsg1-5.1+b4 [353 kB] Get:55 http://deb.debian.org/debian unstable/main loong64 libdebconfclient0 loong64 0.283 [7648 B] Get:56 http://deb.debian.org/debian unstable/main loong64 libclipper-dev loong64 2.1.20201109-2+b4 [82.4 kB] Get:57 http://deb.debian.org/debian unstable/main loong64 libclipper2 loong64 2.1.20201109-2+b4 [1120 kB] Get:58 http://deb.debian.org/debian unstable/main loong64 libcolord2 loong64 1.4.8-3 [138 kB] Get:59 http://deb.debian.org/debian unstable/main loong64 libcups2t64 loong64 2.4.20-1 [251 kB] Get:60 http://deb.debian.org/debian unstable/main loong64 libcurl4-gnutls loong64 8.23.0-1 [430 kB] Get:61 http://deb.debian.org/debian unstable/main loong64 libcurl4-openssl-dev loong64 8.23.0-1 [1297 kB] Get:62 http://deb.debian.org/debian unstable/main loong64 libcurl4t64 loong64 8.23.0-1 [435 kB] Get:63 http://deb.debian.org/debian unstable/main loong64 libdav1d7 loong64 1.5.4-1 [286 kB] Get:64 http://deb.debian.org/debian unstable/main loong64 libdbus-1-3 loong64 1.16.2-8 [173 kB] Get:65 http://deb.debian.org/debian unstable/main loong64 libdconf1 loong64 51.0-2 [42.9 kB] Get:66 http://deb.debian.org/debian unstable/main loong64 libdebhelper-perl all 14.5 [77.7 kB] Get:67 http://deb.debian.org/debian unstable/main loong64 libdouble-conversion3 loong64 3.4.0-1+b1 [41.3 kB] Get:68 http://deb.debian.org/debian unstable/main loong64 libdpkg-perl all 1.23.11 [650 kB] Get:69 http://deb.debian.org/debian unstable/main loong64 libcom-err2 loong64 1.47.4-1+b2 [19.4 kB] Get:70 http://deb.debian.org/debian unstable/main loong64 libatomic1 loong64 16.2.0-4 [9240 B] Get:71 http://deb.debian.org/debian unstable/main loong64 libcc1-0 loong64 16.2.0-4 [41.3 kB] Get:72 http://deb.debian.org/debian unstable/main loong64 libc-bin loong64 2.43-7 [571 kB] Get:73 http://deb.debian.org/debian unstable/main loong64 libc-dev-bin loong64 2.43-7 [38.8 kB] Get:74 http://deb.debian.org/debian unstable/main loong64 libc-gconv-modules-extra loong64 2.43-7 [1157 kB] Get:75 http://deb.debian.org/debian unstable/main loong64 libc6 loong64 2.43-7 [1357 kB] Get:76 http://deb.debian.org/debian unstable/main loong64 libc6-dev loong64 2.43-7 [2935 kB] Get:77 http://deb.debian.org/debian unstable/main loong64 libblas3 loong64 3.12.1-8 [114 kB] Get:78 http://deb.debian.org/debian unstable/main loong64 libavif16 loong64 1.4.2-1 [144 kB] Get:79 http://deb.debian.org/debian unstable/main loong64 libbsd0 loong64 0.12.2-3 [131 kB] Get:80 http://deb.debian.org/debian unstable/main loong64 libcap-ng0 loong64 0.9.6-1+b1 [19.3 kB] Get:81 http://deb.debian.org/debian unstable/main loong64 libcap2 loong64 1:2.78-1+b1 [28.1 kB] Get:82 http://deb.debian.org/debian unstable/main loong64 libccp4-data all 8.0.0-5 [62.5 kB] Get:83 http://deb.debian.org/debian unstable/main loong64 libccp4-dev loong64 8.0.0-5+b1 [42.7 kB] Get:84 http://deb.debian.org/debian unstable/main loong64 libccp4c0t64 loong64 8.0.0-5+b1 [89.8 kB] Get:85 http://deb.debian.org/debian unstable/main loong64 libccp4f0t64 loong64 8.0.0-5+b1 [188 kB] Get:86 http://deb.debian.org/debian unstable/main loong64 libcloudproviders0 loong64 0.4.1-1 [27.7 kB] Get:87 http://deb.debian.org/debian unstable/main loong64 libdatrie1 loong64 0.2.14-2 [39.7 kB] Get:88 http://deb.debian.org/debian unstable/main loong64 libde265-0 loong64 1.1.3-1+b1 [173 kB] Get:89 http://deb.debian.org/debian unstable/main loong64 libdecor-0-0 loong64 0.2.5-1+b1 [15.7 kB] Get:90 http://deb.debian.org/debian unstable/main loong64 libdeflate-dev loong64 1.25-1 [82.6 kB] Get:91 http://deb.debian.org/debian unstable/main loong64 libdeflate0 loong64 1.25-1 [36.1 kB] Get:92 http://deb.debian.org/debian unstable/main loong64 libdrm-amdgpu1 loong64 2.4.134-3 [23.0 kB] Get:93 http://deb.debian.org/debian unstable/main loong64 libdrm-common all 2.4.134-3 [7860 B] Get:94 http://deb.debian.org/debian unstable/main loong64 libdrm2 loong64 2.4.134-3 [39.0 kB] Get:95 http://deb.debian.org/debian unstable/main loong64 libedit2 loong64 3.1-20260512-1 [93.4 kB] Get:96 http://deb.debian.org/debian unstable/main loong64 libegl1 loong64 1.7.0-3+b1 [35.4 kB] Get:97 http://deb.debian.org/debian unstable/main loong64 libcrypt1 loong64 1:4.5.2+20251210-1 [94.8 kB] Get:98 http://deb.debian.org/debian unstable/main loong64 libegl-mesa0 loong64 26.2.6-1 [124 kB] Get:99 http://deb.debian.org/debian unstable/main loong64 libblkid1 loong64 2.42.4-1 [179 kB] Get:100 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 libdb5.3t64 loong64 5.3.28+dfsg2-11+b1 [711 kB] Fetched 43.3 MB in 0s (95.8 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-exception1.92-dev_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libc6-dev_2.43-7_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-container1.92-dev_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libccp4f0t64_8.0.0-5+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libatomic1_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libbrotli1_1.2.0-4.1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-timer1.92.0_1.92.0-4+b1_loong64.deb' dpkg-name: info: moved 'libaudit-common_1%3a4.1.2-1_all.deb' to '/srv/rebuilderd/tmp/tmp61qn5lhs/libaudit-common_4.1.2-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libbrotli-dev_1.2.0-4.1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-atomic1.92-dev_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libdeflate0_1.25-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-python1.92-dev_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libdrm-common_2.4.134-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-math1.92.0_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-numpy1.92-dev_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libde265-0_1.1.3-1+b1_loong64.deb' dpkg-name: info: moved 'libcap2_1%3a2.78-1+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmp61qn5lhs/libcap2_2.78-1+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libcom-err2_1.47.4-1+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libedit2_3.1-20260512-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libavahi-common-data_0.8-18_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-numpy1.92.0_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libcloudproviders0_0.4.1-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libcairo-gobject2_1.18.4-3+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-python1.92.0_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libcurl4-openssl-dev_8.23.0-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libatspi2.0-0t64_2.62.1-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libcups2t64_2.4.20-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-thread1.92-dev_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libdconf1_51.0-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libbinutils_2.47.50.20261021-1_loong64.deb' dpkg-name: info: moved 'libattr1_1%3a2.6.0-1_loong64.deb' to '/srv/rebuilderd/tmp/tmp61qn5lhs/libattr1_2.6.0-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-test1.92-dev_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libctf0_2.47.50.20261021-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-graph1.92-dev_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libc6_2.43-7_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libcolord2_1.4.8-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libdb5.3t64_5.3.28+dfsg2-11+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-thread-dev_1.92.0.1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libdebconfclient0_0.283_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libcbf-dev_0.9.7+dfsg1-5.1+b4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libc-gconv-modules-extra_2.43-7_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libdav1d7_1.5.4-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-dev_1.92.0.1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libccp4-dev_8.0.0-5+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libblkid1_2.42.4-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libctf-nobfd0_2.47.50.20261021-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libcurl4-gnutls_8.23.0-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libegl-mesa0_26.2.6-1_loong64.deb' dpkg-name: info: moved 'libaudit1_1%3a4.1.2-1+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmp61qn5lhs/libaudit1_4.1.2-1+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libdpkg-perl_1.23.11_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-timer-dev_1.92.0.1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-python-dev_1.92.0.1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libdecor-0-0_0.2.5-1+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-random1.92-dev_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-serialization1.92.0_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libc-bin_2.43-7_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libdebhelper-perl_14.5_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-date-time1.92.0_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libdatrie1_0.2.14-2_loong64.deb' dpkg-name: info: moved 'libcrypt1_1%3a4.5.2+20251210-1_loong64.deb' to '/srv/rebuilderd/tmp/tmp61qn5lhs/libcrypt1_4.5.2+20251210-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-test1.92.0_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-graph1.92.0_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libcurl4t64_8.23.0-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-chrono1.92-dev_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libcc1-0_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libdrm-amdgpu1_2.4.134-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-regex1.92-dev_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libavahi-client3_0.8-18_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-atomic1.92.0_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libcbf1t64_0.9.7+dfsg1-5.1+b4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-timer1.92-dev_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-random1.92.0_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libbsd0_0.12.2-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-numpy-dev_1.92.0.1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libegl1_1.7.0-3+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libbz2-1.0_1.0.8-6+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-chrono1.92.0_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libavahi-common3_0.8-18_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libatk-bridge2.0-0t64_2.62.1-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libcairo2_1.18.4-3+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libatk1.0-0t64_2.62.1-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libc-dev-bin_2.43-7_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libccp4c0t64_8.0.0-5+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libavif16_1.4.2-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libclipper-dev_2.1.20201109-2+b4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libccp4-data_8.0.0-5_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libdbus-1-3_1.16.2-8_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-math1.92-dev_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-serialization1.92-dev_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libblas3_3.12.1-8_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-thread1.92.0_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libdeflate-dev_1.25-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libcap-ng0_0.9.6-1+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-regex1.92.0_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libdrm2_2.4.134-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-date-time1.92-dev_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libdouble-conversion3_3.4.0-1+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost1.92-dev_1.92.0-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libclipper2_2.1.20201109-2+b4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp61qn5lhs/libboost-container1.92.0_1.92.0-4+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libeigen3-dev all 5.0.1-3 [1192 kB] Get:2 http://deb.debian.org/debian unstable/main loong64 libelf1t64 loong64 0.196-1 [61.7 kB] Get:3 http://deb.debian.org/debian unstable/main loong64 libfftw3-bin loong64 3.3.11-1 [42.8 kB] Get:4 http://deb.debian.org/debian unstable/main loong64 libfftw3-dev loong64 3.3.11-1 [4403 kB] Get:5 http://deb.debian.org/debian unstable/main loong64 libfftw3-double3 loong64 3.3.11-1 [364 kB] Get:6 http://deb.debian.org/debian unstable/main loong64 libfftw3-long3 loong64 3.3.11-1 [619 kB] Get:7 http://deb.debian.org/debian unstable/main loong64 libfftw3-single3 loong64 3.3.11-1 [362 kB] Get:8 http://deb.debian.org/debian unstable/main loong64 libflac14 loong64 1.5.0+ds-5+b1 [163 kB] Get:9 http://deb.debian.org/debian unstable/main loong64 libfontconfig1 loong64 2.17.1-5 [137 kB] Get:10 http://deb.debian.org/debian unstable/main loong64 libglut3.12 loong64 3.4.0-6+b2 [138 kB] Get:11 http://deb.debian.org/debian unstable/main loong64 libfreetype6 loong64 2.14.3+dfsg-3 [486 kB] Get:12 http://deb.debian.org/debian unstable/main loong64 libfribidi0 loong64 1.0.16-5+b1 [26.6 kB] Get:13 http://deb.debian.org/debian unstable/main loong64 libfuse3-4 loong64 3.18.3-1 [103 kB] Get:14 http://deb.debian.org/debian unstable/main loong64 libgcc-16-dev loong64 16.2.0-4 [4952 kB] Get:15 http://deb.debian.org/debian unstable/main loong64 libgcc-s1 loong64 16.2.0-4 [104 kB] Get:16 http://deb.debian.org/debian unstable/main loong64 libgfortran5 loong64 16.2.0-4 [414 kB] Get:17 http://deb.debian.org/debian unstable/main loong64 libgomp1 loong64 16.2.0-4 [138 kB] Get:18 http://deb.debian.org/debian unstable/main loong64 libitm1 loong64 16.2.0-4 [24.8 kB] Get:19 http://deb.debian.org/debian unstable/main loong64 libgdbm-compat4t64 loong64 1.26-1+b2 [52.1 kB] Get:20 http://deb.debian.org/debian unstable/main loong64 libgdbm6t64 loong64 1.26-1+b2 [78.7 kB] Get:21 http://deb.debian.org/debian unstable/main loong64 libgdk-pixbuf-2.0-0 loong64 2.44.8+dfsg-1 [95.7 kB] Get:22 http://deb.debian.org/debian unstable/main loong64 libgdk-pixbuf2.0-common all 2.44.8+dfsg-1 [316 kB] Get:23 http://deb.debian.org/debian unstable/main loong64 libglew2.3 loong64 2.3.1+dfsg2-5 [158 kB] Get:24 http://deb.debian.org/debian unstable/main loong64 libglib2.0-0t64 loong64 2.90.1-2 [1521 kB] Get:25 http://deb.debian.org/debian unstable/main loong64 libglycin-2-0 loong64 2.2.3+ds-1 [1415 kB] Get:26 http://deb.debian.org/debian unstable/main loong64 libgmp-dev loong64 2:6.3.0+dfsg-5+b2 [1083 kB] Get:27 http://deb.debian.org/debian unstable/main loong64 libgmp10 loong64 2:6.3.0+dfsg-5+b2 [567 kB] Get:28 http://deb.debian.org/debian unstable/main loong64 libgmpxx4ldbl loong64 2:6.3.0+dfsg-5+b2 [328 kB] Get:29 http://deb.debian.org/debian unstable/main loong64 libgnutls-dane0t64 loong64 3.8.13-1 [495 kB] Get:30 http://deb.debian.org/debian unstable/main loong64 libgnutls28-dev loong64 3.8.13-1 [2870 kB] Get:31 http://deb.debian.org/debian unstable/main loong64 libgnutls30t64 loong64 3.8.13-1 [1488 kB] Get:32 http://deb.debian.org/debian unstable/main loong64 libgraphite2-3 loong64 1.3.15-2 [73.9 kB] Get:33 http://deb.debian.org/debian unstable/main loong64 libgtk-3-0t64 loong64 3.24.52-3 [2846 kB] Get:34 http://deb.debian.org/debian unstable/main loong64 libgtk-3-common all 3.24.52-3 [4928 kB] Get:35 http://deb.debian.org/debian unstable/main loong64 libhdf5-320 loong64 2.2.0+repack-6 [1720 kB] Get:36 http://deb.debian.org/debian unstable/main loong64 libhdf5-cpp-320 loong64 2.2.0+repack-6 [133 kB] Get:37 http://deb.debian.org/debian unstable/main loong64 libhdf5-dev loong64 2.2.0+repack-6 [8467 kB] Get:38 http://deb.debian.org/debian unstable/main loong64 libhdf5-fortran-320 loong64 2.2.0+repack-6 [121 kB] Get:39 http://deb.debian.org/debian unstable/main loong64 libhdf5-hl-320 loong64 2.2.0+repack-6 [76.5 kB] Get:40 http://deb.debian.org/debian unstable/main loong64 libhdf5-hl-cpp-320 loong64 2.2.0+repack-6 [27.6 kB] Get:41 http://deb.debian.org/debian unstable/main loong64 libhdf5-hl-fortran-320 loong64 2.2.0+repack-6 [48.3 kB] Get:42 http://deb.debian.org/debian unstable/main loong64 libhwloc-plugins loong64 2.15.0-2 [16.1 kB] Get:43 http://deb.debian.org/debian unstable/main loong64 libhwloc15 loong64 2.15.0-2 [155 kB] Get:44 http://deb.debian.org/debian unstable/main loong64 libicu78 loong64 78.3-2 [9977 kB] Get:45 http://deb.debian.org/debian unstable/main loong64 libisl23 loong64 0.28-1 [667 kB] Get:46 http://deb.debian.org/debian unstable/main loong64 libjansson4 loong64 2.15.1-1 [66.2 kB] Get:47 http://deb.debian.org/debian unstable/main loong64 libjbig-dev loong64 2.1-6.1+b3 [54.2 kB] Get:48 http://deb.debian.org/debian unstable/main loong64 libjbig0 loong64 2.1-6.1+b3 [31.9 kB] Get:49 http://deb.debian.org/debian unstable/main loong64 libjxl0.11 loong64 0.11.2-5.1 [872 kB] Get:50 http://deb.debian.org/debian unstable/main loong64 libjq1 loong64 1.8.2-1 [168 kB] Get:51 http://deb.debian.org/debian unstable/main loong64 libgssapi-krb5-2 loong64 1.22.1-3 [137 kB] Get:52 http://deb.debian.org/debian unstable/main loong64 libgssrpc4t64 loong64 1.22.1-3 [57.9 kB] Get:53 http://deb.debian.org/debian unstable/main loong64 libk5crypto3 loong64 1.22.1-3 [81.9 kB] Get:54 http://deb.debian.org/debian unstable/main loong64 libkadm5clnt-mit12 loong64 1.22.1-3 [39.8 kB] Get:55 http://deb.debian.org/debian unstable/main loong64 libkadm5srv-mit12 loong64 1.22.1-3 [54.0 kB] Get:56 http://deb.debian.org/debian unstable/main loong64 libepoxy0 loong64 1.5.10-2+b2 [202 kB] Get:57 http://deb.debian.org/debian unstable/main loong64 libesmtp6 loong64 1.1.0-3.2+b2 [59.7 kB] Get:58 http://deb.debian.org/debian unstable/main loong64 libevdev2 loong64 1.14.0+dfsg-1 [31.4 kB] Get:59 http://deb.debian.org/debian unstable/main loong64 libevent-2.1-7t64 loong64 2.1.13-stable-1 [181 kB] Get:60 http://deb.debian.org/debian unstable/main loong64 libevent-core-2.1-7t64 loong64 2.1.13-stable-1 [131 kB] Get:61 http://deb.debian.org/debian unstable/main loong64 libevent-pthreads-2.1-7t64 loong64 2.1.13-stable-1 [53.9 kB] Get:62 http://deb.debian.org/debian unstable/main loong64 libfabric1 loong64 2.1.0-1.1+b2 [589 kB] Get:63 http://deb.debian.org/debian unstable/main loong64 libffi8 loong64 3.8.0-2 [26.3 kB] Get:64 http://deb.debian.org/debian unstable/main loong64 libfontenc1 loong64 1:1.1.8-1+b3 [23.4 kB] Get:65 http://deb.debian.org/debian unstable/main loong64 libgav1-2 loong64 0.20.0-2+b2 [333 kB] Get:66 http://deb.debian.org/debian unstable/main loong64 libgcrypt20 loong64 1.12.4-2 [808 kB] Get:67 http://deb.debian.org/debian unstable/main loong64 libglu1-mesa loong64 9.0.2-1.1+b4 [175 kB] Get:68 http://deb.debian.org/debian unstable/main loong64 libglu1-mesa-dev loong64 9.0.2-1.1+b4 [588 kB] Get:69 http://deb.debian.org/debian unstable/main loong64 libgl-dev loong64 1.7.0-3+b1 [99.9 kB] Get:70 http://deb.debian.org/debian unstable/main loong64 libgl1 loong64 1.7.0-3+b1 [106 kB] Get:71 http://deb.debian.org/debian unstable/main loong64 libgles2 loong64 1.7.0-3+b1 [19.9 kB] Get:72 http://deb.debian.org/debian unstable/main loong64 libglvnd0 loong64 1.7.0-3+b1 [54.9 kB] Get:73 http://deb.debian.org/debian unstable/main loong64 libglx-dev loong64 1.7.0-3+b1 [15.0 kB] Get:74 http://deb.debian.org/debian unstable/main loong64 libglx0 loong64 1.7.0-3+b1 [29.8 kB] Get:75 http://deb.debian.org/debian unstable/main loong64 libgpg-error0 loong64 1.61-5 [90.8 kB] Get:76 http://deb.debian.org/debian unstable/main loong64 libgudev-1.0-0 loong64 238-7+b2 [14.4 kB] Get:77 http://deb.debian.org/debian unstable/main loong64 libheif-plugin-dav1d loong64 1.23.6-2 [21.1 kB] Get:78 http://deb.debian.org/debian unstable/main loong64 libheif-plugin-libde265 loong64 1.23.6-2 [18.9 kB] Get:79 http://deb.debian.org/debian unstable/main loong64 libheif1 loong64 1.23.6-2 [744 kB] Get:80 http://deb.debian.org/debian unstable/main loong64 libice6 loong64 2:1.1.1-1+b2 [65.2 kB] Get:81 http://deb.debian.org/debian unstable/main loong64 libidn2-0 loong64 2.3.8-5 [109 kB] Get:82 http://deb.debian.org/debian unstable/main loong64 libidn2-dev loong64 2.3.8-5 [138 kB] Get:83 http://deb.debian.org/debian unstable/main loong64 libimagequant0 loong64 4.4.1-1+b2 [225 kB] Get:84 http://deb.debian.org/debian unstable/main loong64 libinput-bin loong64 1.31.3-1 [28.5 kB] Get:85 http://deb.debian.org/debian unstable/main loong64 libinput10 loong64 1.31.3-1 [155 kB] Get:86 http://deb.debian.org/debian unstable/main loong64 libjpeg-dev loong64 1:3.1.3-4 [78.9 kB] Get:87 http://deb.debian.org/debian unstable/main loong64 libjpeg62-turbo loong64 1:3.1.3-4 [208 kB] Get:88 http://deb.debian.org/debian unstable/main loong64 libjpeg62-turbo-dev loong64 1:3.1.3-4 [604 kB] Get:89 http://deb.debian.org/debian unstable/main loong64 libgbm1 loong64 26.2.6-1 [46.5 kB] Get:90 http://deb.debian.org/debian unstable/main loong64 libgl1-mesa-dri loong64 26.2.6-1 [37.1 kB] Get:91 http://deb.debian.org/debian unstable/main loong64 libglx-mesa0 loong64 26.2.6-1 [112 kB] Get:92 http://deb.debian.org/debian unstable/main loong64 libhogweed6t64 loong64 3.10.2-1+b1 [336 kB] Get:93 http://deb.debian.org/debian unstable/main loong64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get:94 http://deb.debian.org/debian unstable/main loong64 libibverbs1 loong64 65.0-1.1 [64.1 kB] Get:95 http://deb.debian.org/debian unstable/main loong64 libjs-sphinxdoc all 9.2.0-1 [46.8 kB] Get:96 http://deb.debian.org/debian unstable/main loong64 libfile-stripnondeterminism-perl all 1.15.1-1 [17.1 kB] Get:97 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 libexpat1 loong64 2.9.0-1 [124 kB] Get:98 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 libexpat1-dev loong64 2.9.0-1 [346 kB] Get:99 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 libharfbuzz-subset0 loong64 12.3.2-2+b2 [559 kB] Get:100 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 libharfbuzz0b loong64 12.3.2-2+b2 [505 kB] Fetched 63.6 MB in 1s (102 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libfftw3-dev_3.3.11-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libepoxy0_1.5.10-2+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libibverbs1_65.0-1.1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libgudev-1.0-0_238-7+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libevent-pthreads-2.1-7t64_2.1.13-stable-1_loong64.deb' dpkg-name: info: moved 'libjpeg62-turbo-dev_1%3a3.1.3-4_loong64.deb' to '/srv/rebuilderd/tmp/tmp92gw7f5h/libjpeg62-turbo-dev_3.1.3-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libglut3.12_3.4.0-6+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libhdf5-dev_2.2.0+repack-6_loong64.deb' dpkg-name: info: moved 'libjpeg-dev_1%3a3.1.3-4_loong64.deb' to '/srv/rebuilderd/tmp/tmp92gw7f5h/libjpeg-dev_3.1.3-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libglx-dev_1.7.0-3+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libglew2.3_2.3.1+dfsg2-5_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libfribidi0_1.0.16-5+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libgbm1_26.2.6-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libgcc-16-dev_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libicu78_78.3-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libgl-dev_1.7.0-3+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libgssapi-krb5-2_1.22.1-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libgraphite2-3_1.3.15-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libimagequant0_4.4.1-1+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libjansson4_2.15.1-1_loong64.deb' dpkg-name: info: moved 'libgmp-dev_2%3a6.3.0+dfsg-5+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmp92gw7f5h/libgmp-dev_6.3.0+dfsg-5+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libinput10_1.31.3-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libhdf5-cpp-320_2.2.0+repack-6_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libjxl0.11_0.11.2-5.1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libhogweed6t64_3.10.2-1+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libjbig-dev_2.1-6.1+b3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libjq1_1.8.2-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libhdf5-hl-320_2.2.0+repack-6_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libjs-sphinxdoc_9.2.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libglu1-mesa-dev_9.0.2-1.1+b4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libelf1t64_0.196-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libevent-core-2.1-7t64_2.1.13-stable-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libgfortran5_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libfuse3-4_3.18.3-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libhwloc-plugins_2.15.0-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libhdf5-hl-fortran-320_2.2.0+repack-6_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libgssrpc4t64_1.22.1-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libfreetype6_2.14.3+dfsg-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libhdf5-320_2.2.0+repack-6_loong64.deb' dpkg-name: info: moved 'libjpeg62-turbo_1%3a3.1.3-4_loong64.deb' to '/srv/rebuilderd/tmp/tmp92gw7f5h/libjpeg62-turbo_3.1.3-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libgnutls-dane0t64_3.8.13-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libgtk-3-common_3.24.52-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libkadm5clnt-mit12_1.22.1-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libharfbuzz0b_12.3.2-2+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libevent-2.1-7t64_2.1.13-stable-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libgl1_1.7.0-3+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libk5crypto3_1.22.1-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libjbig0_2.1-6.1+b3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libglib2.0-0t64_2.90.1-2_loong64.deb' dpkg-name: info: moved 'libgmp10_2%3a6.3.0+dfsg-5+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmp92gw7f5h/libgmp10_6.3.0+dfsg-5+b2_loong64.deb' dpkg-name: info: moved 'libfontenc1_1%3a1.1.8-1+b3_loong64.deb' to '/srv/rebuilderd/tmp/tmp92gw7f5h/libfontenc1_1.1.8-1+b3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libkadm5srv-mit12_1.22.1-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libgdbm6t64_1.26-1+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libgnutls30t64_3.8.13-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libfontconfig1_2.17.1-5_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libisl23_0.28-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libhdf5-hl-cpp-320_2.2.0+repack-6_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libidn2-dev_2.3.8-5_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libheif-plugin-libde265_1.23.6-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libhdf5-fortran-320_2.2.0+repack-6_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libffi8_3.8.0-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libitm1_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libglx-mesa0_26.2.6-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libglu1-mesa_9.0.2-1.1+b4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libfftw3-bin_3.3.11-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libinput-bin_1.31.3-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libesmtp6_1.1.0-3.2+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libexpat1_2.9.0-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libgcc-s1_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libidn2-0_2.3.8-5_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libexpat1-dev_2.9.0-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libevdev2_1.14.0+dfsg-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libgcrypt20_1.12.4-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libgl1-mesa-dri_26.2.6-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libflac14_1.5.0+ds-5+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libgdk-pixbuf2.0-common_2.44.8+dfsg-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libfftw3-single3_3.3.11-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libgdbm-compat4t64_1.26-1+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libheif-plugin-dav1d_1.23.6-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libfftw3-long3_3.3.11-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libfabric1_2.1.0-1.1+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libjs-jquery_3.7.1+dfsg+~3.5.33-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libglvnd0_1.7.0-3+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libharfbuzz-subset0_12.3.2-2+b2_loong64.deb' dpkg-name: info: moved 'libgmpxx4ldbl_2%3a6.3.0+dfsg-5+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmp92gw7f5h/libgmpxx4ldbl_6.3.0+dfsg-5+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libgles2_1.7.0-3+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libgtk-3-0t64_3.24.52-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libgomp1_16.2.0-4_loong64.deb' dpkg-name: info: moved 'libice6_2%3a1.1.1-1+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmp92gw7f5h/libice6_1.1.1-1+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libfftw3-double3_3.3.11-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libgnutls28-dev_3.8.13-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libgpg-error0_1.61-5_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libglycin-2-0_2.2.3+ds-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libgav1-2_0.20.0-2+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libfile-stripnondeterminism-perl_1.15.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libgdk-pixbuf-2.0-0_2.44.8+dfsg-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libheif1_1.23.6-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libeigen3-dev_5.0.1-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libhwloc15_2.15.0-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmp92gw7f5h/libglx0_1.7.0-3+b1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libmagic-mgc loong64 1:5.47-4 [345 kB] Get:2 http://deb.debian.org/debian unstable/main loong64 libmagic1t64 loong64 1:5.47-4 [112 kB] Get:3 http://deb.debian.org/debian unstable/main loong64 liblsan0 loong64 16.2.0-4 [1251 kB] Get:4 http://deb.debian.org/debian unstable/main loong64 libkeyutils1 loong64 1.6.3-6+b2 [9524 B] Get:5 http://deb.debian.org/debian unstable/main loong64 libkdb5-10t64 loong64 1.22.1-3 [42.1 kB] Get:6 http://deb.debian.org/debian unstable/main loong64 libkrb5-3 loong64 1.22.1-3 [342 kB] Get:7 http://deb.debian.org/debian unstable/main loong64 libkrb5-dev loong64 1.22.1-3 [14.1 kB] Get:8 http://deb.debian.org/debian unstable/main loong64 libkrb5support0 loong64 1.22.1-3 [31.4 kB] Get:9 http://deb.debian.org/debian unstable/main loong64 libmp3lame0 loong64 4.0-1 [288 kB] Get:10 http://deb.debian.org/debian unstable/main loong64 liblapack3 loong64 3.12.1-8 [1876 kB] Get:11 http://deb.debian.org/debian unstable/main loong64 liblcms2-2 loong64 2.19.1-1 [168 kB] Get:12 http://deb.debian.org/debian unstable/main loong64 libopengl-dev loong64 1.7.0-3+b1 [4580 B] Get:13 http://deb.debian.org/debian unstable/main loong64 libopengl0 loong64 1.7.0-3+b1 [38.4 kB] Get:14 http://deb.debian.org/debian unstable/main loong64 liblzf1 loong64 3.6-4+b4 [9908 B] Get:15 http://deb.debian.org/debian unstable/main loong64 libmd0 loong64 1.3.0-1 [40.8 kB] Get:16 http://deb.debian.org/debian unstable/main loong64 libnl-3-200 loong64 3.12.0-2+b1 [61.4 kB] Get:17 http://deb.debian.org/debian unstable/main loong64 libnl-route-3-200 loong64 3.12.0-2+b1 [194 kB] Get:18 http://deb.debian.org/debian unstable/main loong64 libnotify4 loong64 0.8.9-1 [27.3 kB] Get:19 http://deb.debian.org/debian unstable/main loong64 libogg0 loong64 1.3.6-2+b1 [24.1 kB] Get:20 http://deb.debian.org/debian unstable/main loong64 libonig5 loong64 6.9.10-1+b1 [194 kB] Get:21 http://deb.debian.org/debian unstable/main loong64 libpciaccess0 loong64 0.19-2 [17.8 kB] Get:22 http://deb.debian.org/debian unstable/main loong64 libpipeline1 loong64 1.5.8-3 [48.6 kB] Get:23 http://deb.debian.org/debian unstable/main loong64 libpng16-16t64 loong64 1.6.59-1 [286 kB] Get:24 http://deb.debian.org/debian unstable/main loong64 libpsl-dev loong64 0.23.3-1 [30.1 kB] Get:25 http://deb.debian.org/debian unstable/main loong64 libpsl5t64 loong64 0.23.3-1 [61.6 kB] Get:26 http://deb.debian.org/debian unstable/main loong64 libllvm22 loong64 1:22.1.8-3 [26.8 MB] Get:27 http://deb.debian.org/debian unstable/main loong64 liblz4-1 loong64 1.10.0-10 [61.7 kB] Get:28 http://deb.debian.org/debian unstable/main loong64 liblz4-dev loong64 1.10.0-10 [263 kB] Get:29 http://deb.debian.org/debian unstable/main loong64 libmd4c0 loong64 0.5.3-1 [49.7 kB] Get:30 http://deb.debian.org/debian unstable/main loong64 libmmdb2-0 loong64 2.0.22-1+b3 [339 kB] Get:31 http://deb.debian.org/debian unstable/main loong64 libmmdb2-dev loong64 2.0.22-1+b3 [93.0 kB] Get:32 http://deb.debian.org/debian unstable/main loong64 libmpc3 loong64 1.3.1-3 [56.2 kB] Get:33 http://deb.debian.org/debian unstable/main loong64 libmpfr6 loong64 4.2.2-3 [664 kB] Get:34 http://deb.debian.org/debian unstable/main loong64 libmpg123-0t64 loong64 1.33.7-1 [141 kB] Get:35 http://deb.debian.org/debian unstable/main loong64 libmtdev1t64 loong64 1.1.7-1+b2 [23.1 kB] Get:36 http://deb.debian.org/debian unstable/main loong64 libncursesw6 loong64 6.6+20260608-2 [137 kB] Get:37 http://deb.debian.org/debian unstable/main loong64 libnetcdf22 loong64 1:4.10.1-1+b1 [518 kB] Get:38 http://deb.debian.org/debian unstable/main loong64 libnettle8t64 loong64 3.10.2-1+b1 [313 kB] Get:39 http://deb.debian.org/debian unstable/main loong64 libnghttp2-14 loong64 1.70.0-1 [93.5 kB] Get:40 http://deb.debian.org/debian unstable/main loong64 libnghttp2-dev loong64 1.70.0-1 [219 kB] Get:41 http://deb.debian.org/debian unstable/main loong64 libnghttp3-9 loong64 1.17.0-1 [68.5 kB] Get:42 http://deb.debian.org/debian unstable/main loong64 libnghttp3-dev loong64 1.17.0-1 [173 kB] Get:43 http://deb.debian.org/debian unstable/main loong64 libngtcp2-16 loong64 1.24.0-1 [144 kB] Get:44 http://deb.debian.org/debian unstable/main loong64 libngtcp2-crypto-gnutls8 loong64 1.24.0-1 [23.1 kB] Get:45 http://deb.debian.org/debian unstable/main loong64 libngtcp2-crypto-ossl-dev loong64 1.24.0-1 [42.5 kB] Get:46 http://deb.debian.org/debian unstable/main loong64 libngtcp2-crypto-ossl0 loong64 1.24.0-1 [25.9 kB] Get:47 http://deb.debian.org/debian unstable/main loong64 libngtcp2-dev loong64 1.24.0-1 [409 kB] Get:48 http://deb.debian.org/debian unstable/main loong64 libopenjp2-7 loong64 2.5.4-1.1 [204 kB] Get:49 http://deb.debian.org/debian unstable/main loong64 libldap-dev loong64 2.6.14+dfsg-2 [579 kB] Get:50 http://deb.debian.org/debian unstable/main loong64 libldap2 loong64 2.6.14+dfsg-2 [188 kB] Get:51 http://deb.debian.org/debian unstable/main loong64 libopenmpi40 loong64 6.0.0~rc2-2 [2442 kB] Get:52 http://deb.debian.org/debian unstable/main loong64 libopus0 loong64 1.6.1-1+b1 [3444 kB] Get:53 http://deb.debian.org/debian unstable/main loong64 libp11-kit-dev loong64 0.26.5-1 [226 kB] Get:54 http://deb.debian.org/debian unstable/main loong64 libp11-kit0 loong64 0.26.5-1 [432 kB] Get:55 http://deb.debian.org/debian unstable/main loong64 libpam-modules loong64 1.7.0-8 [168 kB] Get:56 http://deb.debian.org/debian unstable/main loong64 libpam-modules-bin loong64 1.7.0-8 [46.6 kB] Get:57 http://deb.debian.org/debian unstable/main loong64 libpam-runtime all 1.7.0-8 [246 kB] Get:58 http://deb.debian.org/debian unstable/main loong64 libpam0g loong64 1.7.0-8 [67.6 kB] Get:59 http://deb.debian.org/debian unstable/main loong64 libpango-1.0-0 loong64 1.58.2-1 [230 kB] Get:60 http://deb.debian.org/debian unstable/main loong64 libpangocairo-1.0-0 loong64 1.58.2-1 [33.5 kB] Get:61 http://deb.debian.org/debian unstable/main loong64 libpangoft2-1.0-0 loong64 1.58.2-1 [51.9 kB] Get:62 http://deb.debian.org/debian unstable/main loong64 libpcre2-16-0 loong64 10.49-1 [284 kB] Get:63 http://deb.debian.org/debian unstable/main loong64 libpcre2-32-0 loong64 10.49-1 [271 kB] Get:64 http://deb.debian.org/debian unstable/main loong64 libpcre2-8-0 loong64 10.49-1 [300 kB] Get:65 http://deb.debian.org/debian unstable/main loong64 libperl5.42 loong64 5.42.3-1 [4194 kB] Get:66 http://deb.debian.org/debian unstable/main loong64 libpixman-1-0 loong64 0.46.4-1+b2 [163 kB] Get:67 http://deb.debian.org/debian unstable/main loong64 libpkgconf7 loong64 2.5.1-4 [48.2 kB] Get:68 http://deb.debian.org/debian unstable/main loong64 libpopt0 loong64 1.19+dfsg-2+b2 [44.4 kB] Get:69 http://deb.debian.org/debian unstable/main loong64 libpulse0 loong64 17.0+dfsg1-3 [255 kB] Get:70 http://deb.debian.org/debian unstable/main loong64 libpython3-all-dev loong64 3.14.8-1 [1020 B] Get:71 http://deb.debian.org/debian unstable/main loong64 libpython3-dev loong64 3.14.8-1 [8752 B] Get:72 http://deb.debian.org/debian unstable/main loong64 libpython3-stdlib loong64 3.14.8-1 [8520 B] Get:73 http://deb.debian.org/debian unstable/main loong64 libpython3.14 loong64 3.14.10-1 [2368 kB] Get:74 http://deb.debian.org/debian unstable/main loong64 libpython3.14-dev loong64 3.14.10-1 [15.9 MB] Get:75 http://deb.debian.org/debian unstable/main loong64 libpython3.14-minimal loong64 3.14.10-1 [903 kB] Get:76 http://deb.debian.org/debian unstable/main loong64 libpython3.14-stdlib loong64 3.14.10-1 [2316 kB] Get:77 http://deb.debian.org/debian unstable/main loong64 libpython3.15 loong64 3.15.2-1 [2492 kB] Get:78 http://deb.debian.org/debian unstable/main loong64 libpython3.15-dev loong64 3.15.2-1 [16.8 MB] Get:79 http://deb.debian.org/debian unstable/main loong64 libpython3.15-minimal loong64 3.15.2-1 [928 kB] Get:80 http://deb.debian.org/debian unstable/main loong64 libpython3.15-stdlib loong64 3.15.2-1 [3032 kB] Get:81 http://deb.debian.org/debian unstable/main loong64 libqhull-r8.0 loong64 2020.2-9 [241 kB] Get:82 http://deb.debian.org/debian unstable/main loong64 libqt5core5t64 loong64 5.15.19+dfsg-6 [1867 kB] Get:83 http://deb.debian.org/debian unstable/main loong64 libqt5dbus5t64 loong64 5.15.19+dfsg-6 [206 kB] Get:84 http://deb.debian.org/debian unstable/main loong64 libqt5gui5t64 loong64 5.15.19+dfsg-6 [3434 kB] Get:85 http://deb.debian.org/debian unstable/main loong64 libqt5network5t64 loong64 5.15.19+dfsg-6 [668 kB] Get:86 http://deb.debian.org/debian unstable/main loong64 libqt5opengl5t64 loong64 5.15.19+dfsg-6 [144 kB] Get:87 http://deb.debian.org/debian unstable/main loong64 libqt5printsupport5t64 loong64 5.15.19+dfsg-6 [196 kB] Get:88 http://deb.debian.org/debian unstable/main loong64 libqt5sql5t64 loong64 5.15.19+dfsg-6 [119 kB] Get:89 http://deb.debian.org/debian unstable/main loong64 libqt5test5t64 loong64 5.15.19+dfsg-6 [135 kB] Get:90 http://deb.debian.org/debian unstable/main loong64 libqt5widgets5t64 loong64 5.15.19+dfsg-6 [2395 kB] Get:91 http://deb.debian.org/debian unstable/main loong64 libqt5designer5 loong64 5.15.19-2 [2765 kB] Get:92 http://deb.debian.org/debian unstable/main loong64 libqt5help5 loong64 5.15.19-2 [152 kB] Get:93 http://deb.debian.org/debian unstable/main loong64 libmount1 loong64 2.42.4-1 [220 kB] Get:94 http://deb.debian.org/debian unstable/main loong64 liblzma-dev loong64 5.8.4-1 [492 kB] Get:95 http://deb.debian.org/debian unstable/main loong64 liblzma5 loong64 5.8.4-1 [341 kB] Get:96 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 liblerc-dev loong64 4.2.0+ds-1 [697 kB] Get:97 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 liblerc4 loong64 4.2.0+ds-1 [185 kB] Get:98 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 libpmix2t64 loong64 7.0.0~rc1-2+b1 [761 kB] Get:99 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 libproc2-1 loong64 2:4.0.7-1 [69.8 kB] Get:100 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 libpam-systemd loong64 262.1-1 [316 kB] Fetched 110 MB in 1s (101 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpango-1.0-0_1.58.2-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libnotify4_0.8.9-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/liblzma-dev_5.8.4-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libngtcp2-dev_1.24.0-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpython3.14-stdlib_3.14.10-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libmount1_2.42.4-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpangocairo-1.0-0_1.58.2-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/liblerc4_4.2.0+ds-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpython3.14-dev_3.14.10-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libkeyutils1_1.6.3-6+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpython3.15-stdlib_3.15.2-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libngtcp2-crypto-ossl0_1.24.0-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libnghttp3-dev_1.17.0-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libqt5widgets5t64_5.15.19+dfsg-6_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libp11-kit0_0.26.5-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libopus0_1.6.1-1+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libqt5core5t64_5.15.19+dfsg-6_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libnl-3-200_3.12.0-2+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libopengl0_1.7.0-3+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpcre2-16-0_10.49-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libmpg123-0t64_1.33.7-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libmp3lame0_4.0-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libkrb5support0_1.22.1-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpangoft2-1.0-0_1.58.2-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpopt0_1.19+dfsg-2+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libqt5network5t64_5.15.19+dfsg-6_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/liblz4-1_1.10.0-10_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/liblapack3_3.12.1-8_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/liblerc-dev_4.2.0+ds-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libqt5sql5t64_5.15.19+dfsg-6_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libmd0_1.3.0-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpng16-16t64_1.6.59-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libmpfr6_4.2.2-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libmd4c0_0.5.3-1_loong64.deb' dpkg-name: info: moved 'libmagic-mgc_1%3a5.47-4_loong64.deb' to '/srv/rebuilderd/tmp/tmpgock1che/libmagic-mgc_5.47-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpmix2t64_7.0.0~rc1-2+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libqt5opengl5t64_5.15.19+dfsg-6_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libqt5gui5t64_5.15.19+dfsg-6_loong64.deb' dpkg-name: info: moved 'libllvm22_1%3a22.1.8-3_loong64.deb' to '/srv/rebuilderd/tmp/tmpgock1che/libllvm22_22.1.8-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpam-modules_1.7.0-8_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpulse0_17.0+dfsg1-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libmpc3_1.3.1-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libogg0_1.3.6-2+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpython3-stdlib_3.14.8-1_loong64.deb' dpkg-name: info: moved 'libnetcdf22_1%3a4.10.1-1+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpgock1che/libnetcdf22_4.10.1-1+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpam0g_1.7.0-8_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpciaccess0_0.19-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libopenmpi40_6.0.0~rc2-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libkdb5-10t64_1.22.1-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libnettle8t64_3.10.2-1+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libqhull-r8.0_2020.2-9_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpython3.15-minimal_3.15.2-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpython3.15_3.15.2-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpam-systemd_262.1-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libnl-route-3-200_3.12.0-2+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpcre2-8-0_10.49-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libldap2_2.6.14+dfsg-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libopengl-dev_1.7.0-3+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libnghttp2-14_1.70.0-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libkrb5-dev_1.22.1-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/liblsan0_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libopenjp2-7_2.5.4-1.1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libkrb5-3_1.22.1-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpcre2-32-0_10.49-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpsl-dev_0.23.3-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libperl5.42_5.42.3-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libonig5_6.9.10-1+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/liblcms2-2_2.19.1-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpam-modules-bin_1.7.0-8_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpsl5t64_0.23.3-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpython3-all-dev_3.14.8-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libngtcp2-16_1.24.0-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libqt5printsupport5t64_5.15.19+dfsg-6_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libngtcp2-crypto-gnutls8_1.24.0-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libmmdb2-dev_2.0.22-1+b3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libngtcp2-crypto-ossl-dev_1.24.0-1_loong64.deb' dpkg-name: info: moved 'libmagic1t64_1%3a5.47-4_loong64.deb' to '/srv/rebuilderd/tmp/tmpgock1che/libmagic1t64_5.47-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpixman-1-0_0.46.4-1+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libp11-kit-dev_0.26.5-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libqt5dbus5t64_5.15.19+dfsg-6_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpython3-dev_3.14.8-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpkgconf7_2.5.1-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libqt5test5t64_5.15.19+dfsg-6_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpipeline1_1.5.8-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libmtdev1t64_1.1.7-1+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/liblzma5_5.8.4-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libqt5designer5_5.15.19-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpython3.14-minimal_3.14.10-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpython3.14_3.14.10-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpython3.15-dev_3.15.2-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libmmdb2-0_2.0.22-1+b3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/liblz4-dev_1.10.0-10_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/liblzf1_3.6-4+b4_loong64.deb' dpkg-name: info: moved 'libproc2-1_2%3a4.0.7-1_loong64.deb' to '/srv/rebuilderd/tmp/tmpgock1che/libproc2-1_4.0.7-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libnghttp2-dev_1.70.0-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libncursesw6_6.6+20260608-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libldap-dev_2.6.14+dfsg-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libqt5help5_5.15.19-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libpam-runtime_1.7.0-8_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpgock1che/libnghttp3-9_1.17.0-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 libsframe3 loong64 2.47.50.20261021-1 [86.1 kB] Get:2 http://deb.debian.org/debian unstable/main loong64 libsasl2-2 loong64 2.1.28+dfsg1-12 [56.5 kB] Get:3 http://deb.debian.org/debian unstable/main loong64 libsasl2-modules-db loong64 2.1.28+dfsg1-12 [17.9 kB] Get:4 http://deb.debian.org/debian unstable/main loong64 libstdc++-16-dev loong64 16.2.0-4 [5779 kB] Get:5 http://deb.debian.org/debian unstable/main loong64 libstdc++6 loong64 16.2.0-4 [750 kB] Get:6 http://deb.debian.org/debian unstable/main loong64 libtsan2 loong64 16.2.0-4 [2507 kB] Get:7 http://deb.debian.org/debian unstable/main loong64 libubsan1 loong64 16.2.0-4 [1115 kB] Get:8 http://deb.debian.org/debian unstable/main loong64 libsz2 loong64 1.1.7-1 [19.0 kB] Get:9 http://deb.debian.org/debian unstable/main loong64 libseccomp2 loong64 2.6.1-1+b2 [50.0 kB] Get:10 http://deb.debian.org/debian unstable/main loong64 libselinux1 loong64 3.11-2.1+b1 [87.0 kB] Get:11 http://deb.debian.org/debian unstable/main loong64 libsm6 loong64 2:1.2.6-1+b2 [37.8 kB] Get:12 http://deb.debian.org/debian unstable/main loong64 libsndfile1 loong64 1.2.2-4+b1 [204 kB] Get:13 http://deb.debian.org/debian unstable/main loong64 libssh2-1-dev loong64 1.11.1-6 [557 kB] Get:14 http://deb.debian.org/debian unstable/main loong64 libssh2-1t64 loong64 1.11.1-6 [245 kB] Get:15 http://deb.debian.org/debian unstable/main loong64 libtasn1-6 loong64 4.21.0-2+b1 [50.2 kB] Get:16 http://deb.debian.org/debian unstable/main loong64 libtasn1-6-dev loong64 4.21.0-2+b1 [155 kB] Get:17 http://deb.debian.org/debian unstable/main loong64 libthai-data all 0.1.30-3 [172 kB] Get:18 http://deb.debian.org/debian unstable/main loong64 libthai0 loong64 0.1.30-3 [51.8 kB] Get:19 http://deb.debian.org/debian unstable/main loong64 libtool all 2.6.2-3 [552 kB] Get:20 http://deb.debian.org/debian unstable/main loong64 libunistring-dev loong64 1.4.2-1 [918 kB] Get:21 http://deb.debian.org/debian unstable/main loong64 libunistring5 loong64 1.4.2-1 [483 kB] Get:22 http://deb.debian.org/debian unstable/main loong64 libvorbis0a loong64 1.3.7-3+b2 [87.5 kB] Get:23 http://deb.debian.org/debian unstable/main loong64 libvorbisenc2 loong64 1.3.7-3+b2 [76.0 kB] Get:24 http://deb.debian.org/debian unstable/main loong64 libwacom-common all 2.20.0-1 [119 kB] Get:25 http://deb.debian.org/debian unstable/main loong64 libwacom9 loong64 2.20.0-1 [25.2 kB] Get:26 http://deb.debian.org/debian unstable/main loong64 libsharpyuv-dev loong64 1.6.0-0.1 [128 kB] Get:27 http://deb.debian.org/debian unstable/main loong64 libsharpyuv0 loong64 1.6.0-0.1 [115 kB] Get:28 http://deb.debian.org/debian unstable/main loong64 libwebp-dev loong64 1.6.0-0.1 [747 kB] Get:29 http://deb.debian.org/debian unstable/main loong64 libwebp7 loong64 1.6.0-0.1 [291 kB] Get:30 http://deb.debian.org/debian unstable/main loong64 libwebpdecoder3 loong64 1.6.0-0.1 [194 kB] Get:31 http://deb.debian.org/debian unstable/main loong64 libwebpdemux2 loong64 1.6.0-0.1 [114 kB] Get:32 http://deb.debian.org/debian unstable/main loong64 libwebpmux3 loong64 1.6.0-0.1 [127 kB] Get:33 http://deb.debian.org/debian unstable/main loong64 libx11-6 loong64 2:1.8.14-1 [821 kB] Get:34 http://deb.debian.org/debian unstable/main loong64 libx11-data all 2:1.8.14-1 [349 kB] Get:35 http://deb.debian.org/debian unstable/main loong64 libx11-dev loong64 2:1.8.14-1 [1382 kB] Get:36 http://deb.debian.org/debian unstable/main loong64 libx11-xcb1 loong64 2:1.8.14-1 [252 kB] Get:37 http://deb.debian.org/debian unstable/main loong64 libxau-dev loong64 1:1.0.11-1+b2 [28.2 kB] Get:38 http://deb.debian.org/debian unstable/main loong64 libxau6 loong64 1:1.0.11-1+b2 [21.0 kB] Get:39 http://deb.debian.org/debian unstable/main loong64 libxcb-dri3-0 loong64 1.17.0-2+b2 [107 kB] Get:40 http://deb.debian.org/debian unstable/main loong64 libxcb-glx0 loong64 1.17.0-2+b2 [122 kB] Get:41 http://deb.debian.org/debian unstable/main loong64 libxcb-present0 loong64 1.17.0-2+b2 [105 kB] Get:42 http://deb.debian.org/debian unstable/main loong64 libxcb-randr0 loong64 1.17.0-2+b2 [116 kB] Get:43 http://deb.debian.org/debian unstable/main loong64 libxcb-render0 loong64 1.17.0-2+b2 [115 kB] Get:44 http://deb.debian.org/debian unstable/main loong64 libxcb-shape0 loong64 1.17.0-2+b2 [105 kB] Get:45 http://deb.debian.org/debian unstable/main loong64 libxcb-shm0 loong64 1.17.0-2+b2 [105 kB] Get:46 http://deb.debian.org/debian unstable/main loong64 libxcb-sync1 loong64 1.17.0-2+b2 [108 kB] Get:47 http://deb.debian.org/debian unstable/main loong64 libxcb-xfixes0 loong64 1.17.0-2+b2 [109 kB] Get:48 http://deb.debian.org/debian unstable/main loong64 libxcb-xinerama0 loong64 1.17.0-2+b2 [105 kB] Get:49 http://deb.debian.org/debian unstable/main loong64 libxcb-xinput0 loong64 1.17.0-2+b2 [129 kB] Get:50 http://deb.debian.org/debian unstable/main loong64 libxcb-xkb1 loong64 1.17.0-2+b2 [129 kB] Get:51 http://deb.debian.org/debian unstable/main loong64 libxcb1 loong64 1.17.0-2+b2 [144 kB] Get:52 http://deb.debian.org/debian unstable/main loong64 libxcb1-dev loong64 1.17.0-2+b2 [250 kB] Get:53 http://deb.debian.org/debian unstable/main loong64 libxcomposite1 loong64 1:0.4.6-1+b2 [16.9 kB] Get:54 http://deb.debian.org/debian unstable/main loong64 libxcursor1 loong64 1:1.2.3-1+b2 [40.7 kB] Get:55 http://deb.debian.org/debian unstable/main loong64 libxdamage1 loong64 1:1.1.7-1+b1 [16.4 kB] Get:56 http://deb.debian.org/debian unstable/main loong64 libxdmcp-dev loong64 1:1.1.5-2+b1 [53.5 kB] Get:57 http://deb.debian.org/debian unstable/main loong64 libxdmcp6 loong64 1:1.1.5-2+b1 [28.4 kB] Get:58 http://deb.debian.org/debian unstable/main loong64 libsensors-config all 1:3.6.2-2 [16.2 kB] Get:59 http://deb.debian.org/debian unstable/main loong64 libsensors5 loong64 1:3.6.2-2+b2 [37.1 kB] Get:60 http://deb.debian.org/debian unstable/main loong64 libtinfo6 loong64 6.6+20260608-2 [352 kB] Get:61 http://deb.debian.org/debian unstable/main loong64 libssl-dev loong64 3.6.5-1 [5677 kB] Get:62 http://deb.debian.org/debian unstable/main loong64 libssl3t64 loong64 3.6.5-1 [2156 kB] Get:63 http://deb.debian.org/debian unstable/main loong64 libqt5xml5t64 loong64 5.15.19+dfsg-6 [122 kB] Get:64 http://deb.debian.org/debian unstable/main loong64 libraqm0 loong64 0.10.5-1 [13.4 kB] Get:65 http://deb.debian.org/debian unstable/main loong64 librdmacm1t64 loong64 65.0-1.1 [75.3 kB] Get:66 http://deb.debian.org/debian unstable/main loong64 libreadline8t64 loong64 8.3-4 [181 kB] Get:67 http://deb.debian.org/debian unstable/main loong64 librtmp-dev loong64 2.6-1 [126 kB] Get:68 http://deb.debian.org/debian unstable/main loong64 librtmp1 loong64 2.6-1 [60.2 kB] Get:69 http://deb.debian.org/debian unstable/main loong64 libsdl2-2.0-0 loong64 2.32.74+ds-1 [120 kB] Get:70 http://deb.debian.org/debian unstable/main loong64 libssm-dev loong64 1.4.0-2+b4 [15.2 kB] Get:71 http://deb.debian.org/debian unstable/main loong64 libssm2 loong64 1.4.0-2+b4 [80.7 kB] Get:72 http://deb.debian.org/debian unstable/main loong64 libsvtav1enc4 loong64 4.2.0+dfsg-3 [1161 kB] Get:73 http://deb.debian.org/debian unstable/main loong64 libtiff-dev loong64 4.7.2-1 [855 kB] Get:74 http://deb.debian.org/debian unstable/main loong64 libtiff6 loong64 4.7.2-1 [373 kB] Get:75 http://deb.debian.org/debian unstable/main loong64 libtiffxx6 loong64 4.7.2-1 [190 kB] Get:76 http://deb.debian.org/debian unstable/main loong64 libuchardet0 loong64 0.0.8-2+b2 [69.9 kB] Get:77 http://deb.debian.org/debian unstable/main loong64 libunbound8 loong64 1.26.2-1 [623 kB] Get:78 http://deb.debian.org/debian unstable/main loong64 libsmartcols1 loong64 2.42.4-1 [149 kB] Get:79 http://deb.debian.org/debian unstable/main loong64 libuuid1 loong64 2.42.4-1 [33.1 kB] Get:80 http://deb.debian.org/debian unstable/main loong64 libvulkan1 loong64 1.4.363.0-1 [157 kB] Get:81 http://deb.debian.org/debian unstable/main loong64 libwayland-client0 loong64 1.26.0-1 [29.6 kB] Get:82 http://deb.debian.org/debian unstable/main loong64 libwayland-cursor0 loong64 1.26.0-1 [11.8 kB] Get:83 http://deb.debian.org/debian unstable/main loong64 libwayland-egl1 loong64 1.26.0-1 [5740 B] Get:84 http://deb.debian.org/debian unstable/main loong64 libwxbase3.2-1t64 loong64 3.2.11+dfsg1-2 [1078 kB] Get:85 http://deb.debian.org/debian unstable/main loong64 libwxgtk-gl3.2-1t64 loong64 3.2.11+dfsg1-2 [87.3 kB] Get:86 http://deb.debian.org/debian unstable/main loong64 libwxgtk3.2-1t64 loong64 3.2.11+dfsg1-2 [4638 kB] Get:87 http://deb.debian.org/debian unstable/main loong64 libxcb-util1 loong64 0.4.1-1+b2 [23.7 kB] Get:88 http://deb.debian.org/debian unstable/main loong64 libxcb-image0 loong64 0.4.0-2+b3 [22.3 kB] Get:89 http://deb.debian.org/debian unstable/main loong64 libxcb-keysyms1 loong64 0.4.1-1+b2 [17.2 kB] Get:90 http://deb.debian.org/debian unstable/main loong64 libxcb-render-util0 loong64 0.3.10-1+b2 [18.7 kB] Get:91 http://deb.debian.org/debian unstable/main loong64 libxcb-icccm4 loong64 0.4.2-1+b2 [27.5 kB] Get:92 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 librsvg2-2 loong64 2.63.3+dfsg-1 [1617 kB] Get:93 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 libsdl3-0 loong64 3.4.18+ds-1 [1014 kB] Get:94 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 libsqlite3-0 loong64 3.53.4-2 [950 kB] Get:95 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 libsystemd-shared loong64 262.1-1 [2437 kB] Get:96 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 libsystemd0 loong64 262.1-1 [465 kB] Get:97 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 libudev1 loong64 262.1-1 [138 kB] Get:98 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 libtcl8.6 loong64 8.6.18+dfsg-1 [1075 kB] Get:99 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 libtk8.6 loong64 8.6.18-1 [802 kB] Get:100 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 libucx0 loong64 1.23.0~rc1-1 [898 kB] Fetched 48.7 MB in 0s (98.3 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libvorbisenc2_1.3.7-3+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libuuid1_2.42.4-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libxcb-render0_1.17.0-2+b2_loong64.deb' dpkg-name: info: moved 'libsensors5_1%3a3.6.2-2+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmpbi_zzmyf/libsensors5_3.6.2-2+b2_loong64.deb' dpkg-name: info: moved 'libxcursor1_1%3a1.2.3-1+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmpbi_zzmyf/libxcursor1_1.2.3-1+b2_loong64.deb' dpkg-name: info: moved 'libx11-data_2%3a1.8.14-1_all.deb' to '/srv/rebuilderd/tmp/tmpbi_zzmyf/libx11-data_1.8.14-1_all.deb' dpkg-name: info: moved 'libxdamage1_1%3a1.1.7-1+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpbi_zzmyf/libxdamage1_1.1.7-1+b1_loong64.deb' dpkg-name: info: moved 'libxdmcp6_1%3a1.1.5-2+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpbi_zzmyf/libxdmcp6_1.1.5-2+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libselinux1_3.11-2.1+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libxcb-icccm4_0.4.2-1+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libtasn1-6-dev_4.21.0-2+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libssm2_1.4.0-2+b4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libstdc++-16-dev_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libwayland-cursor0_1.26.0-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/librtmp1_2.6-1_loong64.deb' dpkg-name: info: moved 'libxcomposite1_1%3a0.4.6-1+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmpbi_zzmyf/libxcomposite1_0.4.6-1+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libssh2-1-dev_1.11.1-6_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libwayland-client0_1.26.0-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libraqm0_0.10.5-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libsasl2-2_2.1.28+dfsg1-12_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libxcb-xkb1_1.17.0-2+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libsystemd-shared_262.1-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libxcb-sync1_1.17.0-2+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libxcb-randr0_1.17.0-2+b2_loong64.deb' dpkg-name: info: moved 'libx11-xcb1_2%3a1.8.14-1_loong64.deb' to '/srv/rebuilderd/tmp/tmpbi_zzmyf/libx11-xcb1_1.8.14-1_loong64.deb' dpkg-name: info: moved 'libsm6_2%3a1.2.6-1+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmpbi_zzmyf/libsm6_1.2.6-1+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libtinfo6_6.6+20260608-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libwayland-egl1_1.26.0-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libreadline8t64_8.3-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libxcb-present0_1.17.0-2+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libvorbis0a_1.3.7-3+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libssl3t64_3.6.5-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libsharpyuv0_1.6.0-0.1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libsystemd0_262.1-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libwxgtk-gl3.2-1t64_3.2.11+dfsg1-2_loong64.deb' dpkg-name: info: moved 'libxau6_1%3a1.0.11-1+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmpbi_zzmyf/libxau6_1.0.11-1+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/librtmp-dev_2.6-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libsqlite3-0_3.53.4-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libssl-dev_3.6.5-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libtiff-dev_4.7.2-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libunistring-dev_1.4.2-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libtiffxx6_4.7.2-1_loong64.deb' dpkg-name: info: moved 'libxdmcp-dev_1%3a1.1.5-2+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpbi_zzmyf/libxdmcp-dev_1.1.5-2+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libxcb1_1.17.0-2+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libsframe3_2.47.50.20261021-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libxcb-render-util0_0.3.10-1+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libwacom-common_2.20.0-1_all.deb' dpkg-name: info: moved 'libx11-6_2%3a1.8.14-1_loong64.deb' to '/srv/rebuilderd/tmp/tmpbi_zzmyf/libx11-6_1.8.14-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libqt5xml5t64_5.15.19+dfsg-6_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libtiff6_4.7.2-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libwxgtk3.2-1t64_3.2.11+dfsg1-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libwacom9_2.20.0-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libtcl8.6_8.6.18+dfsg-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libwebp7_1.6.0-0.1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libxcb-shm0_1.17.0-2+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libsharpyuv-dev_1.6.0-0.1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libtasn1-6_4.21.0-2+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libstdc++6_16.2.0-4_loong64.deb' dpkg-name: info: moved 'libx11-dev_2%3a1.8.14-1_loong64.deb' to '/srv/rebuilderd/tmp/tmpbi_zzmyf/libx11-dev_1.8.14-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libxcb-xinerama0_1.17.0-2+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libxcb-util1_0.4.1-1+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libwebpdecoder3_1.6.0-0.1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/librsvg2-2_2.63.3+dfsg-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libtsan2_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libxcb-keysyms1_0.4.1-1+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libudev1_262.1-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libxcb-xinput0_1.17.0-2+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libxcb-xfixes0_1.17.0-2+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libxcb-shape0_1.17.0-2+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libssm-dev_1.4.0-2+b4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/librdmacm1t64_65.0-1.1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libwebpmux3_1.6.0-0.1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libuchardet0_0.0.8-2+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libxcb-dri3-0_1.17.0-2+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libsz2_1.1.7-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libxcb-image0_0.4.0-2+b3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libxcb1-dev_1.17.0-2+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libthai0_0.1.30-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libtool_2.6.2-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libthai-data_0.1.30-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libunistring5_1.4.2-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libucx0_1.23.0~rc1-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libsvtav1enc4_4.2.0+dfsg-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libunbound8_1.26.2-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libwxbase3.2-1t64_3.2.11+dfsg1-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libsdl2-2.0-0_2.32.74+ds-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libwebpdemux2_1.6.0-0.1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libsasl2-modules-db_2.1.28+dfsg1-12_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libvulkan1_1.4.363.0-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libssh2-1t64_1.11.1-6_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libsdl3-0_3.4.18+ds-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libubsan1_16.2.0-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libsndfile1_1.2.2-4+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libtk8.6_8.6.18-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libwebp-dev_1.6.0-0.1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libxcb-glx0_1.17.0-2+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libseccomp2_2.6.1-1+b2_loong64.deb' dpkg-name: info: moved 'libxau-dev_1%3a1.0.11-1+b2_loong64.deb' to '/srv/rebuilderd/tmp/tmpbi_zzmyf/libxau-dev_1.0.11-1+b2_loong64.deb' dpkg-name: info: moved 'libsensors-config_1%3a3.6.2-2_all.deb' to '/srv/rebuilderd/tmp/tmpbi_zzmyf/libsensors-config_3.6.2-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpbi_zzmyf/libsmartcols1_2.42.4-1_loong64.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-brotli loong64 1.2.0-4.1 [319 kB] Get:2 http://deb.debian.org/debian unstable/main loong64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get:3 http://deb.debian.org/debian unstable/main loong64 python3-contourpy loong64 1.3.3-3 [215 kB] Get:4 http://deb.debian.org/debian unstable/main loong64 pybuild-plugin-pyproject all 7.20261030 [7480 B] Get:5 http://deb.debian.org/debian unstable/main loong64 python3-flexcache all 0.3-3 [13.7 kB] Get:6 http://deb.debian.org/debian unstable/main loong64 python3-flexparser all 0.4-2 [43.1 kB] Get:7 http://deb.debian.org/debian unstable/main loong64 python3-fonttools loong64 4.65.0-1+b1 [1574 kB] Get:8 http://deb.debian.org/debian unstable/main loong64 python3-freetype all 2.5.1-3 [88.9 kB] Get:9 http://deb.debian.org/debian unstable/main loong64 python3-h5py all 3.16.0-8 [15.1 kB] Get:10 http://deb.debian.org/debian unstable/main loong64 python3-h5py-serial loong64 3.16.0-8 [1310 kB] Get:11 http://deb.debian.org/debian unstable/main loong64 python3-hatchling all 1.32.4-1 [49.7 kB] Get:12 http://deb.debian.org/debian unstable/main loong64 python3-kiwisolver loong64 1.5.1-1+b1 [63.7 kB] Get:13 http://deb.debian.org/debian unstable/main loong64 libxext6 loong64 2:1.3.4-1+b4 [51.4 kB] Get:14 http://deb.debian.org/debian unstable/main loong64 libxfixes3 loong64 1:6.0.0-2+b5 [20.6 kB] Get:15 http://deb.debian.org/debian unstable/main loong64 libxi6 loong64 2:1.8.4-1 [90.0 kB] Get:16 http://deb.debian.org/debian unstable/main loong64 libxinerama1 loong64 2:1.1.4-3+b5 [16.2 kB] Get:17 http://deb.debian.org/debian unstable/main loong64 libxkbcommon-x11-0 loong64 1.13.1-1 [20.5 kB] Get:18 http://deb.debian.org/debian unstable/main loong64 libxkbcommon0 loong64 1.13.1-1 [142 kB] Get:19 http://deb.debian.org/debian unstable/main loong64 libxml2-16 loong64 2.15.4+dfsg-1+b1 [654 kB] Get:20 http://deb.debian.org/debian unstable/main loong64 libxnvctrl0 loong64 535.171.04-1+b3 [11.1 kB] Get:21 http://deb.debian.org/debian unstable/main loong64 libxrandr2 loong64 2:1.5.4-1+b4 [36.9 kB] Get:22 http://deb.debian.org/debian unstable/main loong64 libxrender1 loong64 1:0.9.13-1 [27.9 kB] Get:23 http://deb.debian.org/debian unstable/main loong64 libxres1 loong64 2:1.2.1-2 [18.0 kB] Get:24 http://deb.debian.org/debian unstable/main loong64 libxshmfence1 loong64 1.3.3-1+b2 [11.3 kB] Get:25 http://deb.debian.org/debian unstable/main loong64 libxslt1.1 loong64 1.1.45-0.1 [157 kB] Get:26 http://deb.debian.org/debian unstable/main loong64 libxss1 loong64 1:1.2.3-1+b4 [17.3 kB] Get:27 http://deb.debian.org/debian unstable/main loong64 libxtst6 loong64 2:1.2.6-1 [26.4 kB] Get:28 http://deb.debian.org/debian unstable/main loong64 libxxf86vm1 loong64 1:1.1.4-2+b1 [20.7 kB] Get:29 http://deb.debian.org/debian unstable/main loong64 libyaml-0-2 loong64 0.2.5-2+b1 [55.7 kB] Get:30 http://deb.debian.org/debian unstable/main loong64 libyuv0 loong64 0.0.1974.20261008-1 [143 kB] Get:31 http://deb.debian.org/debian unstable/main loong64 libzstd-dev loong64 1.5.7+dfsg-4 [992 kB] Get:32 http://deb.debian.org/debian unstable/main loong64 libzstd1 loong64 1.5.7+dfsg-4 [285 kB] Get:33 http://deb.debian.org/debian unstable/main loong64 python3-lxml loong64 6.1.3-1.1 [1741 kB] Get:34 http://deb.debian.org/debian unstable/main loong64 m4 loong64 1.4.21-1 [332 kB] Get:35 http://deb.debian.org/debian unstable/main loong64 make loong64 4.4.1-3+b1 [462 kB] Get:36 http://deb.debian.org/debian unstable/main loong64 man-db loong64 2.13.1-1+b1 [1460 kB] Get:37 http://deb.debian.org/debian unstable/main loong64 python-matplotlib-data all 3.10.9+dfsg1-2 [2734 kB] Get:38 http://deb.debian.org/debian unstable/main loong64 python3-matplotlib loong64 3.10.9+dfsg1-2+b1 [22.6 MB] Get:39 http://deb.debian.org/debian unstable/main loong64 mawk loong64 1.3.4.20260302-2 [141 kB] Get:40 http://deb.debian.org/debian unstable/main loong64 media-types all 14.0.0 [30.8 kB] Get:41 http://deb.debian.org/debian unstable/main loong64 mesa-libgallium loong64 26.2.6-1 [9486 kB] Get:42 http://deb.debian.org/debian unstable/main loong64 python3-mpmath all 1.4.1-4 [448 kB] Get:43 http://deb.debian.org/debian unstable/main loong64 python3-natsort all 8.4.0-2 [39.0 kB] Get:44 http://deb.debian.org/debian unstable/main loong64 ncurses-base all 6.6+20260608-2 [276 kB] Get:45 http://deb.debian.org/debian unstable/main loong64 ncurses-bin loong64 6.6+20260608-2 [442 kB] Get:46 http://deb.debian.org/debian unstable/main loong64 netbase all 6.6 [10.3 kB] Get:47 http://deb.debian.org/debian unstable/main loong64 nettle-dev loong64 3.10.2-1+b1 [1501 kB] Get:48 http://deb.debian.org/debian unstable/main loong64 python3-numpy loong64 1:2.4.6+ds-5+b1 [3920 kB] Get:49 http://deb.debian.org/debian unstable/main loong64 python3-numpy-dev loong64 1:2.4.6+ds-5+b1 [174 kB] Get:50 http://deb.debian.org/debian unstable/main loong64 python3-nxmx all 0.0.7-1 [16.7 kB] Get:51 http://deb.debian.org/debian unstable/main loong64 ocl-icd-libopencl1 loong64 2.3.4-1+b1 [41.5 kB] Get:52 http://deb.debian.org/debian unstable/main loong64 openssl loong64 3.6.5-1 [1520 kB] Get:53 http://deb.debian.org/debian unstable/main loong64 openssl-provider-legacy loong64 3.6.5-1 [325 kB] Get:54 http://deb.debian.org/debian unstable/main loong64 patch loong64 2.8.1-1 [133 kB] Get:55 http://deb.debian.org/debian unstable/main loong64 pci.ids all 0.0~2026.10.24-1 [288 kB] Get:56 http://deb.debian.org/debian unstable/main loong64 perl loong64 5.42.3-1 [266 kB] Get:57 http://deb.debian.org/debian unstable/main loong64 perl-base loong64 5.42.3-1 [1821 kB] Get:58 http://deb.debian.org/debian unstable/main loong64 perl-modules-5.42 all 5.42.3-1 [3213 kB] Get:59 http://deb.debian.org/debian unstable/main loong64 python3-pil loong64 13.0.0-1+b1 [548 kB] Get:60 http://deb.debian.org/debian unstable/main loong64 python3-pil.imagetk loong64 13.0.0-1+b1 [84.0 kB] Get:61 http://deb.debian.org/debian unstable/main loong64 pkgconf loong64 2.5.1-4 [33.6 kB] Get:62 http://deb.debian.org/debian unstable/main loong64 pkgconf-bin loong64 2.5.1-4 [35.2 kB] Get:63 http://deb.debian.org/debian unstable/main loong64 po-debconf all 1.0.22 [216 kB] Get:64 http://deb.debian.org/debian unstable/main loong64 pybind11-dev all 3.1.0-2 [261 kB] Get:65 http://deb.debian.org/debian unstable/main loong64 python3-cairo loong64 1.29.1-1+b1 [113 kB] Get:66 http://deb.debian.org/debian unstable/main loong64 pymol-data all 3.1.0+dfsg-1 [1430 kB] Get:67 http://deb.debian.org/debian unstable/main loong64 python3-opengl all 3.1.10+dfsg-1 [624 kB] Get:68 http://deb.debian.org/debian unstable/main loong64 python3-attr all 26.1.0-1 [72.2 kB] Get:69 http://deb.debian.org/debian unstable/main loong64 python3-biopython loong64 1.88+dfsg-2+b2 [1612 kB] Get:70 http://deb.debian.org/debian unstable/main loong64 python3-build all 1.5.1-1 [85.5 kB] Get:71 http://deb.debian.org/debian unstable/main loong64 python3-certifi all 2026.10.23+ds-1 [9956 B] Get:72 http://deb.debian.org/debian unstable/main loong64 python3-charset-normalizer loong64 3.4.7-2+b3 [208 kB] Get:73 http://deb.debian.org/debian unstable/main loong64 python3-cycler all 0.12.1-3 [9112 B] Get:74 http://deb.debian.org/debian unstable/main loong64 python3-decorator all 5.3.1-1 [33.3 kB] Get:75 http://deb.debian.org/debian unstable/main loong64 python3-editables all 0.6-1 [17.9 kB] Get:76 http://deb.debian.org/debian unstable/main loong64 python3-hdf5plugin all 7.1.0-2 [34.4 kB] Get:77 http://deb.debian.org/debian unstable/main loong64 python3-idna all 3.20-1 [45.8 kB] Get:78 http://deb.debian.org/debian unstable/main loong64 python3-iniconfig all 2.1.0-2 [7540 B] Get:79 http://deb.debian.org/debian unstable/main loong64 python3-installer all 1.1.0+dfsg1-1 [20.0 kB] Get:80 http://deb.debian.org/debian unstable/main loong64 python3-legacy-cgi all 2.6.4-3 [16.9 kB] Get:81 http://deb.debian.org/debian unstable/main loong64 python3-lz4 loong64 4.4.5+dfsg-1+b3 [26.1 kB] Get:82 http://deb.debian.org/debian unstable/main loong64 python3-mrcfile all 1.5.4-4 [121 kB] Get:83 http://deb.debian.org/debian unstable/main loong64 python3-msgpack loong64 1.2.1-3 [99.3 kB] Get:84 http://deb.debian.org/debian unstable/main loong64 python3-ordered-set all 4.1.0-1 [9628 B] Get:85 http://deb.debian.org/debian unstable/main loong64 python3-packaging all 26.2-3 [84.3 kB] Get:86 http://deb.debian.org/debian unstable/main loong64 python3-pathspec all 1.1.1-3 [38.3 kB] Get:87 http://deb.debian.org/debian unstable/main loong64 python3-pint all 0.26.2-1 [267 kB] Get:88 http://deb.debian.org/debian unstable/main loong64 python3 loong64 3.14.8-1 [26.3 kB] Get:89 http://deb.debian.org/debian unstable/main loong64 python3-all loong64 3.14.8-1 [996 B] Get:90 http://deb.debian.org/debian unstable/main loong64 python3-all-dev loong64 3.14.8-1 [1028 B] Get:91 http://deb.debian.org/debian unstable/main loong64 python3-dev loong64 3.14.8-1 [26.7 kB] Get:92 http://deb.debian.org/debian unstable/main loong64 python3-minimal loong64 3.14.8-1 [25.8 kB] Get:93 http://deb.debian.org/debian unstable/main loong64 libxft2 loong64 2.3.6-1+b5 [53.6 kB] Get:94 http://deb.debian.org/debian unstable/main loong64 libxxhash-dev loong64 0.8.3-2+b2 [131 kB] Get:95 http://deb.debian.org/debian unstable/main loong64 libxxhash0 loong64 0.8.3-2+b2 [20.5 kB] Get:96 http://deb.debian.org/debian unstable/main loong64 libz3-4 loong64 4.13.3-1.1 [8183 kB] Get:97 http://deb.debian.org/debian unstable/main loong64 libzopfli1 loong64 1.0.3-3+b1 [102 kB] Get:98 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 linux-libc-dev all 7.2.12-1 [2029 kB] Get:99 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 procps loong64 2:4.0.7-1 [979 kB] Get:100 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 python3-dateutil all 3.0.0-2 [92.8 kB] Fetched 77.8 MB in 1s (105 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/libzstd-dev_1.5.7+dfsg-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-pint_0.26.2-1_all.deb' dpkg-name: info: moved 'libxss1_1%3a1.2.3-1+b4_loong64.deb' to '/srv/rebuilderd/tmp/tmpo41jo9s5/libxss1_1.2.3-1+b4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/libxxhash0_0.8.3-2+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-contourpy_1.3.3-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-brotli_1.2.0-4.1_loong64.deb' dpkg-name: info: moved 'libxrandr2_2%3a1.5.4-1+b4_loong64.deb' to '/srv/rebuilderd/tmp/tmpo41jo9s5/libxrandr2_1.5.4-1+b4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-hatchling_1.32.4-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/ocl-icd-libopencl1_2.3.4-1+b1_loong64.deb' dpkg-name: info: moved 'libxtst6_2%3a1.2.6-1_loong64.deb' to '/srv/rebuilderd/tmp/tmpo41jo9s5/libxtst6_1.2.6-1_loong64.deb' dpkg-name: info: moved 'libxres1_2%3a1.2.1-2_loong64.deb' to '/srv/rebuilderd/tmp/tmpo41jo9s5/libxres1_1.2.1-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-ordered-set_4.1.0-1_all.deb' dpkg-name: info: moved 'libxinerama1_2%3a1.1.4-3+b5_loong64.deb' to '/srv/rebuilderd/tmp/tmpo41jo9s5/libxinerama1_1.1.4-3+b5_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-opengl_3.1.10+dfsg-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/make_4.4.1-3+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-decorator_5.3.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-natsort_8.4.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/libxnvctrl0_535.171.04-1+b3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/libxslt1.1_1.1.45-0.1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-hdf5plugin_7.1.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-editables_0.6-1_all.deb' dpkg-name: info: moved 'libxrender1_1%3a0.9.13-1_loong64.deb' to '/srv/rebuilderd/tmp/tmpo41jo9s5/libxrender1_0.9.13-1_loong64.deb' dpkg-name: info: moved 'python3-numpy_1%3a2.4.6+ds-5+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-numpy_2.4.6+ds-5+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/libxkbcommon0_1.13.1-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3_3.14.8-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-pil_13.0.0-1+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/perl-base_5.42.3-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/perl_5.42.3-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/media-types_14.0.0_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/libzopfli1_1.0.3-3+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-cairo_1.29.1-1+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-kiwisolver_1.5.1-1+b1_loong64.deb' dpkg-name: info: moved 'libxfixes3_1%3a6.0.0-2+b5_loong64.deb' to '/srv/rebuilderd/tmp/tmpo41jo9s5/libxfixes3_6.0.0-2+b5_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/pymol-data_3.1.0+dfsg-1_all.deb' dpkg-name: info: moved 'procps_2%3a4.0.7-1_loong64.deb' to '/srv/rebuilderd/tmp/tmpo41jo9s5/procps_4.0.7-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/libyaml-0-2_0.2.5-2+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/openssl-provider-legacy_3.6.5-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-certifi_2026.10.23+ds-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-legacy-cgi_2.6.4-3_all.deb' dpkg-name: info: moved 'python3-numpy-dev_1%3a2.4.6+ds-5+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-numpy-dev_2.4.6+ds-5+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-fonttools_4.65.0-1+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/libzstd1_1.5.7+dfsg-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-lz4_4.4.5+dfsg-1+b3_loong64.deb' dpkg-name: info: moved 'libxext6_2%3a1.3.4-1+b4_loong64.deb' to '/srv/rebuilderd/tmp/tmpo41jo9s5/libxext6_1.3.4-1+b4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-packaging_26.2-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/netbase_6.6_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-h5py_3.16.0-8_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/linux-libc-dev_7.2.12-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-nxmx_0.0.7-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/patch_2.8.1-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/mesa-libgallium_26.2.6-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-all_3.14.8-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-pil.imagetk_13.0.0-1+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/pkgconf_2.5.1-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python-matplotlib-data_3.10.9+dfsg1-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-installer_1.1.0+dfsg1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/perl-modules-5.42_5.42.3-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-biopython_1.88+dfsg-2+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/man-db_2.13.1-1+b1_loong64.deb' dpkg-name: info: moved 'libxi6_2%3a1.8.4-1_loong64.deb' to '/srv/rebuilderd/tmp/tmpo41jo9s5/libxi6_1.8.4-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/ncurses-base_6.6+20260608-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-pathspec_1.1.1-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/m4_1.4.21-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/nettle-dev_3.10.2-1+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-h5py-serial_3.16.0-8_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/libxkbcommon-x11-0_1.13.1-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/mawk_1.3.4.20260302-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-build_1.5.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/libxml2-16_2.15.4+dfsg-1+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/libxft2_2.3.6-1+b5_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-iniconfig_2.1.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-freetype_2.5.1-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-idna_3.20-1_all.deb' dpkg-name: info: moved 'libxxf86vm1_1%3a1.1.4-2+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpo41jo9s5/libxxf86vm1_1.1.4-2+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-attr_26.1.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-charset-normalizer_3.4.7-2+b3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/po-debconf_1.0.22_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-msgpack_1.2.1-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/libz3-4_4.13.3-1.1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/openssl_3.6.5-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-cycler_0.12.1-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-flexparser_0.4-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/pkgconf-bin_2.5.1-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-minimal_3.14.8-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-mrcfile_1.5.4-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-matplotlib_3.10.9+dfsg1-2+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-mpmath_1.4.1-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-lxml_6.1.3-1.1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/pci.ids_0.0~2026.10.24-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/ncurses-bin_6.6+20260608-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/libyuv0_0.0.1974.20261008-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/libxxhash-dev_0.8.3-2+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-chardet_5.2.0+dfsg-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-all-dev_3.14.8-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/pybind11-dev_3.1.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/libxshmfence1_1.3.3-1+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-flexcache_0.3-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/pybuild-plugin-pyproject_7.20261030_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-dev_3.14.8-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpo41jo9s5/python3-dateutil_3.0.0-2_all.deb' Get:1 http://deb.debian.org/debian unstable/main loong64 python3-pycbf loong64 0.9.7+dfsg1-5.1+b4 [165 kB] Get:2 http://deb.debian.org/debian unstable/main loong64 sfftw-dev loong64 2.1.5-8 [299 kB] Get:3 http://deb.debian.org/debian unstable/main loong64 sfftw2 loong64 2.1.5-8 [211 kB] Get:4 http://deb.debian.org/debian unstable/main loong64 python3-platformdirs all 4.11.9-1 [19.7 kB] Get:5 http://deb.debian.org/debian unstable/main loong64 python3-pygments all 2.20.0+dfsg-2 [850 kB] Get:6 http://deb.debian.org/debian unstable/main loong64 python3-pymol loong64 3.1.0+dfsg-1+b3 [6905 kB] Get:7 http://deb.debian.org/debian unstable/main loong64 python3-pyparsing all 3.3.3-2 [168 kB] Get:8 http://deb.debian.org/debian unstable/main loong64 python3-pyqt5 loong64 5.15.11+dfsg-7 [2450 kB] Get:9 http://deb.debian.org/debian unstable/main loong64 python3-pyqt5.qtopengl loong64 5.15.11+dfsg-7 [211 kB] Get:10 http://deb.debian.org/debian unstable/main loong64 python3-pytest all 9.1.1-1 [280 kB] Get:11 http://deb.debian.org/debian unstable/main loong64 python3-pip all 26.2.2+dfsg-1 [1414 kB] Get:12 http://deb.debian.org/debian unstable/main loong64 python3-pluggy all 1.6.0-2 [27.2 kB] Get:13 http://deb.debian.org/debian unstable/main loong64 python3-procrunner all 2.3.3-2 [13.9 kB] Get:14 http://deb.debian.org/debian unstable/main loong64 python3-psutil loong64 7.2.2-3 [140 kB] Get:15 http://deb.debian.org/debian unstable/main loong64 python3-pyproject-hooks all 1.3.3-1 [12.9 kB] Get:16 http://deb.debian.org/debian unstable/main loong64 python3-reportlab all 5.1.0-1 [827 kB] Get:17 http://deb.debian.org/debian unstable/main loong64 python3-rlpycairo all 0.3.0-4 [10.1 kB] Get:18 http://deb.debian.org/debian unstable/main loong64 python3-tomlkit all 0.13.3-3 [44.1 kB] Get:19 http://deb.debian.org/debian unstable/main loong64 python3-typing-extensions all 4.16.0-5 [95.2 kB] Get:20 http://deb.debian.org/debian unstable/main loong64 python3-urllib3 all 2.8.0-2 [125 kB] Get:21 http://deb.debian.org/debian unstable/main loong64 python3-zopfli loong64 0.4.3-2 [10.8 kB] Get:22 http://deb.debian.org/debian unstable/main loong64 python3-tk loong64 3.14.8-1 [8748 B] Get:23 http://deb.debian.org/debian unstable/main loong64 python3.14 loong64 3.14.10-1 [884 kB] Get:24 http://deb.debian.org/debian unstable/main loong64 python3.14-dev loong64 3.14.10-1 [510 kB] Get:25 http://deb.debian.org/debian unstable/main loong64 python3.14-minimal loong64 3.14.10-1 [2381 kB] Get:26 http://deb.debian.org/debian unstable/main loong64 python3.14-tk loong64 3.14.10-1 [106 kB] Get:27 http://deb.debian.org/debian unstable/main loong64 python3.15 loong64 3.15.2-1 [945 kB] Get:28 http://deb.debian.org/debian unstable/main loong64 python3.15-dev loong64 3.15.2-1 [512 kB] Get:29 http://deb.debian.org/debian unstable/main loong64 python3.15-minimal loong64 3.15.2-1 [2501 kB] Get:30 http://deb.debian.org/debian unstable/main loong64 python3.15-tk loong64 3.15.2-1 [107 kB] Get:31 http://deb.debian.org/debian unstable/main loong64 python3-yaml loong64 6.0.3-1+b3 [149 kB] Get:32 http://deb.debian.org/debian unstable/main loong64 readline-common all 8.3-4 [74.8 kB] Get:33 http://deb.debian.org/debian unstable/main loong64 python3-requests all 2.34.2-1 [77.6 kB] Get:34 http://deb.debian.org/debian unstable/main loong64 python3-scipy loong64 1.17.1-5+b2 [15.3 MB] Get:35 http://deb.debian.org/debian unstable/main loong64 scons all 4.10.1+dfsg-2 [564 kB] Get:36 http://deb.debian.org/debian unstable/main loong64 sed loong64 4.9-3 [330 kB] Get:37 http://deb.debian.org/debian unstable/main loong64 sensible-utils all 0.0.26 [27.0 kB] Get:38 http://deb.debian.org/debian unstable/main loong64 python3-setuptools all 84.2.0-1 [602 kB] Get:39 http://deb.debian.org/debian unstable/main loong64 sgml-base all 1.31+nmu1 [10.9 kB] Get:40 http://deb.debian.org/debian unstable/main loong64 shared-mime-info loong64 2.4-5+b2 [755 kB] Get:41 http://deb.debian.org/debian unstable/main loong64 python3-six all 1.17.0-3 [15.3 kB] Get:42 http://deb.debian.org/debian unstable/main loong64 sphinx-rtd-theme-common all 3.1.0+dfsg-4 [917 kB] Get:43 http://deb.debian.org/debian unstable/main loong64 python3-sympy all 1.14.0-6 [4226 kB] Get:44 http://deb.debian.org/debian unstable/main loong64 sysvinit-utils loong64 3.18-1 [29.9 kB] Get:45 http://deb.debian.org/debian unstable/main loong64 tar loong64 1.35+dfsg-7 [818 kB] Get:46 http://deb.debian.org/debian unstable/main loong64 python3-tqdm all 4.70.1-1 [91.3 kB] Get:47 http://deb.debian.org/debian unstable/main loong64 python3-trove-classifiers all 2026.9.21.13-1 [11.0 kB] Get:48 http://deb.debian.org/debian unstable/main loong64 tzdata all 2026f-1 [263 kB] Get:49 http://deb.debian.org/debian unstable/main loong64 python3-ufolib2 all 0.18.1+dfsg1-2 [32.3 kB] Get:50 http://deb.debian.org/debian unstable/main loong64 unicode-data all 17.0.0-2 [9354 kB] Get:51 http://deb.debian.org/debian unstable/main loong64 user-session-migration loong64 0.5.2 [9736 B] Get:52 http://deb.debian.org/debian unstable/main loong64 util-linux loong64 2.42.4-1 [1210 kB] Get:53 http://deb.debian.org/debian unstable/main loong64 w3c-sgml-lib all 1.3-3 [273 kB] Get:54 http://deb.debian.org/debian unstable/main loong64 python3-wheel all 0.47.0-2 [27.0 kB] Get:55 http://deb.debian.org/debian unstable/main loong64 python3-wxgtk4.0 loong64 4.2.5+dfsg-3+b1 [10.8 MB] Get:56 http://deb.debian.org/debian unstable/main loong64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get:57 http://deb.debian.org/debian unstable/main loong64 xfonts-utils loong64 1:7.7+7+b1 [92.5 kB] Get:58 http://deb.debian.org/debian unstable/main loong64 xkb-data all 2.48-1 [841 kB] Get:59 http://deb.debian.org/debian unstable/main loong64 xml-core all 0.21 [19.0 kB] Get:60 http://deb.debian.org/debian unstable/main loong64 x11-common all 1:7.7+26 [217 kB] Get:61 http://deb.debian.org/debian unstable/main loong64 xorg-sgml-doctools all 1:1.12.1-1 [23.9 kB] Get:62 http://deb.debian.org/debian unstable/main loong64 x11proto-dev all 2025.1-1 [605 kB] Get:63 http://deb.debian.org/debian unstable/main loong64 xtrans-dev all 1.6.0-1 [93.5 kB] Get:64 http://deb.debian.org/debian unstable/main loong64 xz-utils loong64 5.8.4-1 [760 kB] Get:65 http://deb.debian.org/debian unstable/main loong64 zlib1g loong64 1:1.3.dfsg+really1.3.2-4 [88.2 kB] Get:66 http://deb.debian.org/debian unstable/main loong64 zlib1g-dev loong64 1:1.3.dfsg+really1.3.2-4 [973 kB] Get:67 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 python3-pyqt5.sip loong64 12.19.0-1+b2 [70.4 kB] Get:68 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 rsync loong64 3.5.1+ds1-2 [495 kB] Get:69 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 systemd loong64 262.1-1 [3241 kB] Get:70 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 systemd-sysv loong64 262.1-1 [41.7 kB] Get:71 http://snapshot.debian.org/archive/debian/20261029T082808Z unstable/main loong64 python3-uharfbuzz loong64 0.53.3-1 [203 kB] Fetched 76.5 MB in 1s (109 MB/s) dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-pyqt5.sip_12.19.0-1+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/tzdata_2026f-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-zopfli_0.4.3-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-yaml_6.0.3-1+b3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/user-session-migration_0.5.2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/shared-mime-info_2.4-5+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-tomlkit_0.13.3-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/xkb-data_2.48-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-pytest_9.1.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3.14-dev_3.14.10-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3.14-minimal_3.14.10-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-tk_3.14.8-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/sed_4.9-3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-trove-classifiers_2026.9.21.13-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-ufolib2_0.18.1+dfsg1-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3.14_3.14.10-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/sysvinit-utils_3.18-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-uharfbuzz_0.53.3-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-scipy_1.17.1-5+b2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-setuptools_84.2.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-platformdirs_4.11.9-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/xtrans-dev_1.6.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-pyparsing_3.3.3-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-tqdm_4.70.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3.15-dev_3.15.2-1_loong64.deb' dpkg-name: info: moved 'zlib1g-dev_1%3a1.3.dfsg+really1.3.2-4_loong64.deb' to '/srv/rebuilderd/tmp/tmpcbopjmrx/zlib1g-dev_1.3.dfsg+really1.3.2-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-pyproject-hooks_1.3.3-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/systemd-sysv_262.1-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-pluggy_1.6.0-2_all.deb' dpkg-name: info: moved 'xorg-sgml-doctools_1%3a1.12.1-1_all.deb' to '/srv/rebuilderd/tmp/tmpcbopjmrx/xorg-sgml-doctools_1.12.1-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-typing-extensions_4.16.0-5_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3.15-minimal_3.15.2-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/scons_4.10.1+dfsg-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/readline-common_8.3-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/sfftw2_2.1.5-8_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/xml-core_0.21_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-wxgtk4.0_4.2.5+dfsg-3+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/util-linux_2.42.4-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/sphinx-rtd-theme-common_3.1.0+dfsg-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/unicode-data_17.0.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3.15_3.15.2-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-pymol_3.1.0+dfsg-1+b3_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/sensible-utils_0.0.26_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/rsync_3.5.1+ds1-2_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-wheel_0.47.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/x11proto-dev_2025.1-1_all.deb' dpkg-name: info: moved 'xfonts-encodings_1%3a1.0.4-2.2_all.deb' to '/srv/rebuilderd/tmp/tmpcbopjmrx/xfonts-encodings_1.0.4-2.2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-pygments_2.20.0+dfsg-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-urllib3_2.8.0-2_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/w3c-sgml-lib_1.3-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-rlpycairo_0.3.0-4_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-reportlab_5.1.0-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-requests_2.34.2-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-pyqt5_5.15.11+dfsg-7_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/tar_1.35+dfsg-7_loong64.deb' dpkg-name: info: moved 'x11-common_1%3a7.7+26_all.deb' to '/srv/rebuilderd/tmp/tmpcbopjmrx/x11-common_7.7+26_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-six_1.17.0-3_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3.14-tk_3.14.10-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-sympy_1.14.0-6_all.deb' dpkg-name: info: moved 'xfonts-utils_1%3a7.7+7+b1_loong64.deb' to '/srv/rebuilderd/tmp/tmpcbopjmrx/xfonts-utils_7.7+7+b1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-pyqt5.qtopengl_5.15.11+dfsg-7_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/sgml-base_1.31+nmu1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-pip_26.2.2+dfsg-1_all.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/sfftw-dev_2.1.5-8_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/xz-utils_5.8.4-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/systemd_262.1-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3.15-tk_3.15.2-1_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-psutil_7.2.2-3_loong64.deb' dpkg-name: info: moved 'zlib1g_1%3a1.3.dfsg+really1.3.2-4_loong64.deb' to '/srv/rebuilderd/tmp/tmpcbopjmrx/zlib1g_1.3.dfsg+really1.3.2-4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-pycbf_0.9.7+dfsg1-5.1+b4_loong64.deb' dpkg-name: warning: skipping '/srv/rebuilderd/tmp/tmpcbopjmrx/python3-procrunner_2.3.3-2_all.deb' dpkg-buildpackage: info: source package debootsnap-dummy dpkg-buildpackage: info: source version 1.0 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Equivs Dummy Package Generator dpkg-buildpackage: info: host architecture loong64 dpkg-source --before-build . debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/debootsnap-dummy/ dh_install dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'debootsnap-dummy' in '../debootsnap-dummy_1.0_all.deb'. dpkg-genbuildinfo --build=binary -O../debootsnap-dummy_1.0_loong64.buildinfo dpkg-genchanges --build=binary -O../debootsnap-dummy_1.0_loong64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) The package has been created. Attention, the package has been created in the /srv/rebuilderd/tmp/tmpsq61b020/cache directory, not in ".." as indicated by the message above! I: automatically chosen mode: unshare I: chroot architecture loong64 is equal to the host's architecture I: using /srv/rebuilderd/tmp/mmdebstrap.LmSdfXYxcH as tempdir I: running --setup-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/setup00.sh /srv/rebuilderd/tmp/mmdebstrap.LmSdfXYxcH 127.0.0.1 - - [06/Nov/2026 00:42:20] code 404, message File not found 127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:42425 ./ InRelease 127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./Release HTTP/1.1" 200 - Get:2 http://localhost:42425 ./ Release [462 B] 127.0.0.1 - - [06/Nov/2026 00:42:20] code 404, message File not found 127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:42425 ./ Release.gpg 127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./Packages HTTP/1.1" 200 - Get:4 http://localhost:42425 ./ Packages [844 kB] Fetched 845 kB in 0s (19.7 MB/s) Reading package lists... usr-is-merged found but not real -- not running merged-usr setup hook I: skipping apt-get update because it was already run I: downloading packages with apt... 127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./gcc-16-base_16.2.0-4_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./libc-gconv-modules-extra_2.43-7_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./libc6_2.43-7_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./libgcc-s1_16.2.0-4_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./mawk_1.3.4.20260302-2_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./base-files_14.2_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./libtinfo6_6.6%2b20260608-2_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./debianutils_5.24_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./bash_5.3-4_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./libacl1_2.4.0-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./libattr1_2.6.0-1_loong64.deb HTTP/1.1" 200 - 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127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./libblkid1_2.42.4-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./libmount1_2.42.4-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./libsmartcols1_2.42.4-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./libudev1_262.1-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./libuuid1_2.42.4-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./util-linux_2.42.4-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./libdebconfclient0_0.283_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./base-passwd_3.6.8%2bb1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./init-system-helpers_1.69%2bnmu3_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./libc-bin_2.43-7_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./ncurses-base_6.6%2b20260608-2_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:20] "GET /./sysvinit-utils_3.18-1_loong64.deb HTTP/1.1" 200 - I: extracting archives... I: running --extract-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/extract00.sh /srv/rebuilderd/tmp/mmdebstrap.LmSdfXYxcH 127.0.0.1 - - [06/Nov/2026 00:42:23] code 404, message File not found 127.0.0.1 - - [06/Nov/2026 00:42:23] "GET /./InRelease HTTP/1.1" 404 - Ign:1 http://localhost:42425 ./ InRelease 127.0.0.1 - - [06/Nov/2026 00:42:23] "GET /./Release HTTP/1.1" 304 - Hit:2 http://localhost:42425 ./ Release 127.0.0.1 - - [06/Nov/2026 00:42:23] code 404, message File not found 127.0.0.1 - - [06/Nov/2026 00:42:23] "GET /./Release.gpg HTTP/1.1" 404 - Ign:3 http://localhost:42425 ./ Release.gpg Reading package lists... usr-is-merged found but not real -- not running merged-usr extract hook I: installing essential packages... I: running --essential-hook directly: /usr/share/mmdebstrap/hooks/maybe-merged-usr/essential00.sh /srv/rebuilderd/tmp/mmdebstrap.LmSdfXYxcH usr-is-merged was not installed in a previous hook -- not running merged-usr essential hook I: installing remaining packages inside the chroot... 127.0.0.1 - - [06/Nov/2026 00:42:30] "GET /./libsystemd-shared_262.1-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:30] "GET /./systemd_262.1-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:30] "GET /./systemd-sysv_262.1-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:30] "GET /./fonts-lato_2.015-1_all.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:30] "GET /./libexpat1_2.9.0-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:30] "GET /./libpython3.14-minimal_3.14.10-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:30] "GET /./python3.14-minimal_3.14.10-1_loong64.deb HTTP/1.1" 200 - 127.0.0.1 - - [06/Nov/2026 00:42:30] "GET /./python3-minimal_3.14.8-1_loong64.deb HTTP/1.1" 200 - 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Building dependency tree... Reading state information... gzip is already the newest version (1.14-1). gsettings-desktop-schemas is already the newest version (51.0-2). gsettings-desktop-schemas set to manually installed. libaom3 is already the newest version (3.14.1-1). libaom3 set to manually installed. init-system-helpers is already the newest version (1.69+nmu3). libarchive-zip-perl is already the newest version (1.68-1). libarchive-zip-perl set to manually installed. gettext-base is already the newest version (1.0-5). gettext-base set to manually installed. fftw2 is already the newest version (2.1.5-8). fftw2 set to manually installed. dpkg is already the newest version (1.23.11). jq is already the newest version (1.8.2-1). jq set to manually installed. dash is already the newest version (0.5.12-12+b1). g++-16-loongarch64-linux-gnu is already the newest version (16.2.0-4). g++-16-loongarch64-linux-gnu set to manually installed. libantlr3c-dev is already the newest version (3.4+dfsg-4+b3). libantlr3c-dev set to manually installed. libasound2t64 is already the newest version (1.2.16.1-2). libasound2t64 set to manually installed. dconf-service is already the newest version (51.0-2). dconf-service set to manually installed. glycin-thumbnailers is already the newest version (2.2.3+ds-1). glycin-thumbnailers set to manually installed. gcc-16-loongarch64-linux-gnu is already the newest version (16.2.0-4). gcc-16-loongarch64-linux-gnu set to manually installed. libantlr3c-3.4-0 is already the newest version (3.4+dfsg-4+b3). libantlr3c-3.4-0 set to manually installed. gettext is already the newest version (1.0-5). gettext set to manually installed. g++ is already the newest version (4:16.1.0-3). g++ set to manually installed. autopoint is already the newest version (1.0-5). autopoint set to manually installed. cpp-loongarch64-linux-gnu is already the newest version (4:16.1.0-3). cpp-loongarch64-linux-gnu set to manually installed. libasound2-data is already the newest version (1.2.16.1-2). libasound2-data set to manually installed. architecture-properties is already the newest version (0.2.6+b2). architecture-properties set to manually installed. bsdextrautils is already the newest version (2.42.4-1). bsdextrautils set to manually installed. gcc-16-base is already the newest version (16.2.0-4). dbus-user-session is already the newest version (1.16.2-8). dbus-user-session set to manually installed. dh-python is already the newest version (7.20261030). dh-python set to manually installed. automake is already the newest version (1:1.19-3). automake set to manually installed. fonts-dejavu-extra is already the newest version (2.37-9). fonts-dejavu-extra set to manually installed. ca-certificates is already the newest version (20260816+nmu1). ca-certificates set to manually installed. file is already the newest version (1:5.47-4). file set to manually installed. fonts-lyx is already the newest version (2.5.3-2). fonts-lyx set to manually installed. fontconfig is already the newest version (2.17.1-5). fontconfig set to manually installed. libapparmor1 is already the newest version (5.0.2-5). libapparmor1 set to manually installed. dh-autoreconf is already the newest version (23). dh-autoreconf set to manually installed. cpp-16-loongarch64-linux-gnu is already the newest version (16.2.0-4). cpp-16-loongarch64-linux-gnu set to manually installed. fonts-roboto-slab is already the newest version (2.002+20231012+ds-1). fonts-roboto-slab set to manually installed. base-passwd is already the newest version (3.6.8+b1). dconf-gsettings-backend is already the newest version (51.0-2). dconf-gsettings-backend set to manually installed. adwaita-icon-theme is already the newest version (51.0-1). adwaita-icon-theme set to manually installed. fftw-dev is already the newest version (2.1.5-8). fftw-dev set to manually installed. fonts-font-awesome-legacy is already the newest version (6-4). fonts-font-awesome-legacy set to manually installed. bzip2 is already the newest version (1.0.8-6+b2). bzip2 set to manually installed. bash is already the newest version (5.3-4). groff-base is already the newest version (1.24.2-2). groff-base set to manually installed. dh-exec is already the newest version (0.31+b2). dh-exec set to manually installed. cpp-16 is already the newest version (16.2.0-4). cpp-16 set to manually installed. binutils-loongarch64-linux-gnu is already the newest version (2.47.50.20261021-1). binutils-loongarch64-linux-gnu set to manually installed. dpkg-dev is already the newest version (1.23.11). dpkg-dev set to manually installed. gtk-update-icon-cache is already the newest version (4.24.1+ds-1). gtk-update-icon-cache set to manually installed. libasyncns0 is already the newest version (0.8-8). libasyncns0 set to manually installed. hicolor-icon-theme is already the newest version (0.18-2). hicolor-icon-theme set to manually installed. debconf is already the newest version (1.5.92). glycin-loaders is already the newest version (2.2.3+ds-1). glycin-loaders set to manually installed. bubblewrap is already the newest version (0.13.1-1). bubblewrap set to manually installed. base-files is already the newest version (14.2). libacl1 is already the newest version (2.4.0-1). g++-16 is already the newest version (16.2.0-4). g++-16 set to manually installed. debianutils is already the newest version (5.24). g++-loongarch64-linux-gnu is already the newest version (4:16.1.0-3). g++-loongarch64-linux-gnu set to manually installed. cpp is already the newest version (4:16.1.0-3). cpp set to manually installed. dbus is already the newest version (1.16.2-8). dbus set to manually installed. libasan8 is already the newest version (16.2.0-4). libasan8 set to manually installed. at-spi2-common is already the newest version (2.62.1-1). at-spi2-common set to manually installed. intltool-debian is already the newest version (0.35.0+20060710.6). intltool-debian set to manually installed. gcc-loongarch64-linux-gnu is already the newest version (4:16.1.0-3). gcc-loongarch64-linux-gnu set to manually installed. hostname is already the newest version (3.25+b1). fonts-dejavu-core is already the newest version (2.37-9). fonts-dejavu-core set to manually installed. fonts-dejavu-mono is already the newest version (2.37-9). fonts-dejavu-mono set to manually installed. autotools-dev is already the newest version (20240727.1+nmu1). autotools-dev set to manually installed. libaec-dev is already the newest version (1.1.7-1). libaec-dev set to manually installed. comerr-dev is already the newest version (2.1-1.47.4-1+b2). comerr-dev set to manually installed. libann-cctbx-dev is already the newest version (1.1.2+doc-9+b1). libann-cctbx-dev set to manually installed. hdf5-helpers is already the newest version (2.2.0+repack-6). hdf5-helpers set to manually installed. dbus-session-bus-common is already the newest version (1.16.2-8). dbus-session-bus-common set to manually installed. dbus-bin is already the newest version (1.16.2-8). dbus-bin set to manually installed. autoconf is already the newest version (2.73-2). autoconf set to manually installed. dwz is already the newest version (0.17-1). dwz set to manually installed. build-essential is already the newest version (12.12+b1). build-essential set to manually installed. coreutils is already the newest version (9.10-1). dbus-daemon is already the newest version (1.16.2-8). dbus-daemon set to manually installed. libann-cctbx0 is already the newest version (1.1.2+doc-9+b1). libann-cctbx0 set to manually installed. fontconfig-config is already the newest version (2.17.1-5). fontconfig-config set to manually installed. krb5-multidev is already the newest version (1.22.1-3). krb5-multidev set to manually installed. libaec0 is already the newest version (1.1.7-1). libaec0 set to manually installed. dh-strip-nondeterminism is already the newest version (1.15.1-1). dh-strip-nondeterminism set to manually installed. gcc is already the newest version (4:16.1.0-3). gcc set to manually installed. binutils-common is already the newest version (2.47.50.20261021-1). binutils-common set to manually installed. fonts-lato is already the newest version (2.015-1). fonts-lato set to manually installed. fonts-font-awesome is already the newest version (7.3.0+dfsg-1). fonts-font-awesome set to manually installed. fonts-urw-base35 is already the newest version (20200910-9). fonts-urw-base35 set to manually installed. binutils is already the newest version (2.47.50.20261021-1). binutils set to manually installed. diffutils is already the newest version (1:3.12-1+b1). findutils is already the newest version (4.11.0-3). dbus-system-bus-common is already the newest version (1.16.2-8). dbus-system-bus-common set to manually installed. debhelper is already the newest version (14.5). debhelper set to manually installed. gcc-16 is already the newest version (16.2.0-4). gcc-16 set to manually installed. ibverbs-providers is already the newest version 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version (1.58.2-1). libpango-1.0-0 set to manually installed. libnotify4 is already the newest version (0.8.9-1). libnotify4 set to manually installed. liblzma-dev is already the newest version (5.8.4-1). liblzma-dev set to manually installed. libngtcp2-dev is already the newest version (1.24.0-1). libngtcp2-dev set to manually installed. libpython3.14-stdlib is already the newest version (3.14.10-1). libpython3.14-stdlib set to manually installed. libmount1 is already the newest version (2.42.4-1). libpangocairo-1.0-0 is already the newest version (1.58.2-1). libpangocairo-1.0-0 set to manually installed. liblerc4 is already the newest version (4.2.0+ds-1). liblerc4 set to manually installed. libpython3.14-dev is already the newest version (3.14.10-1). libpython3.14-dev set to manually installed. libkeyutils1 is already the newest version (1.6.3-6+b2). libkeyutils1 set to manually installed. libpython3.15-stdlib is already the newest version (3.15.2-1). libpython3.15-stdlib set to manually installed. libngtcp2-crypto-ossl0 is already the newest version (1.24.0-1). libngtcp2-crypto-ossl0 set to manually installed. libnghttp3-dev is already the newest version (1.17.0-1). libnghttp3-dev set to manually installed. libqt5widgets5t64 is already the newest version (5.15.19+dfsg-6). libqt5widgets5t64 set to manually installed. libp11-kit0 is already the newest version (0.26.5-1). libp11-kit0 set to manually installed. libopus0 is already the newest version (1.6.1-1+b1). libopus0 set to manually installed. libqt5core5t64 is already the newest version (5.15.19+dfsg-6). libqt5core5t64 set to manually installed. libnl-3-200 is already the newest version (3.12.0-2+b1). libnl-3-200 set to manually installed. libopengl0 is already the newest version (1.7.0-3+b1). libopengl0 set to manually installed. libpcre2-16-0 is already the newest version (10.49-1). libpcre2-16-0 set to manually installed. libmpg123-0t64 is already the newest version (1.33.7-1). libmpg123-0t64 set to manually installed. libmagic1t64 is already the newest version (1:5.47-4). libmagic1t64 set to manually installed. libmp3lame0 is already the newest version (4.0-1). libmp3lame0 set to manually installed. libkrb5support0 is already the newest version (1.22.1-3). libkrb5support0 set to manually installed. libpangoft2-1.0-0 is already the newest version (1.58.2-1). libpangoft2-1.0-0 set to manually installed. libpopt0 is already the newest version (1.19+dfsg-2+b2). libpopt0 set to manually installed. libqt5network5t64 is already the newest version (5.15.19+dfsg-6). libqt5network5t64 set to manually installed. liblz4-1 is already the newest version (1.10.0-10). liblz4-1 set to manually installed. liblapack3 is already the newest version (3.12.1-8). liblapack3 set to manually installed. liblerc-dev is already the newest version (4.2.0+ds-1). liblerc-dev set to manually installed. libqt5sql5t64 is already the newest version (5.15.19+dfsg-6). libqt5sql5t64 set to manually installed. libmd0 is already the newest version (1.3.0-1). libpng16-16t64 is already the newest version (1.6.59-1). libpng16-16t64 set to manually installed. libmpfr6 is already the newest version (4.2.2-3). libmpfr6 set to manually installed. libmd4c0 is already the newest version (0.5.3-1). libmd4c0 set to manually installed. libpmix2t64 is already the newest version (7.0.0~rc1-2+b1). libpmix2t64 set to manually installed. libqt5opengl5t64 is already the newest version (5.15.19+dfsg-6). libqt5opengl5t64 set to manually installed. libqt5gui5t64 is already the newest version (5.15.19+dfsg-6). libqt5gui5t64 set to manually installed. libpam-modules is already the newest version (1.7.0-8). libpulse0 is already the newest version (17.0+dfsg1-3). libpulse0 set to manually installed. libmpc3 is already the newest version (1.3.1-3). libmpc3 set to manually installed. libogg0 is already the newest version (1.3.6-2+b1). libogg0 set to manually installed. libpython3-stdlib is already the newest version (3.14.8-1). libpython3-stdlib set to manually installed. libpam0g is already the newest version (1.7.0-8). libpciaccess0 is already the newest version (0.19-2). libpciaccess0 set to manually installed. libproc2-1 is already the newest version (2:4.0.7-1). libproc2-1 set to manually installed. libopenmpi40 is already the newest version (6.0.0~rc2-2). libopenmpi40 set to manually installed. libkdb5-10t64 is already the newest version (1.22.1-3). libkdb5-10t64 set to manually installed. libnettle8t64 is already the newest version (3.10.2-1+b1). libnettle8t64 set to manually installed. libqhull-r8.0 is already the newest version (2020.2-9). libqhull-r8.0 set to manually installed. libpython3.15-minimal is already the newest version (3.15.2-1). libpython3.15-minimal set to manually installed. libpython3.15 is already the newest version (3.15.2-1). libpython3.15 set to manually installed. libnetcdf22 is already the newest version (1:4.10.1-1+b1). libnetcdf22 set to manually installed. libpam-systemd is already the newest version (262.1-1). libpam-systemd set to manually installed. libnl-route-3-200 is already the newest version (3.12.0-2+b1). libnl-route-3-200 set to manually installed. libpcre2-8-0 is already the newest version (10.49-1). libldap2 is already the newest version (2.6.14+dfsg-2). libldap2 set to manually installed. libopengl-dev is already the newest version (1.7.0-3+b1). libopengl-dev set to manually installed. libnghttp2-14 is already the newest version (1.70.0-1). libnghttp2-14 set to manually installed. libkrb5-dev is already the newest version (1.22.1-3). libkrb5-dev set to manually installed. liblsan0 is already the newest version (16.2.0-4). liblsan0 set to manually installed. libopenjp2-7 is already the newest version (2.5.4-1.1). libopenjp2-7 set to manually installed. libkrb5-3 is already the newest version (1.22.1-3). libkrb5-3 set to manually installed. libpcre2-32-0 is already the newest version (10.49-1). libpcre2-32-0 set to manually installed. libpsl-dev is already the newest version (0.23.3-1). libpsl-dev set to manually installed. libperl5.42 is already the newest version (5.42.3-1). libperl5.42 set to manually installed. libonig5 is already the newest version (6.9.10-1+b1). libonig5 set to manually installed. liblcms2-2 is already the newest version (2.19.1-1). liblcms2-2 set to manually installed. libpam-modules-bin is already the newest version (1.7.0-8). libpsl5t64 is already the newest version (0.23.3-1). libpsl5t64 set to manually installed. libpython3-all-dev is already the newest version (3.14.8-1). libpython3-all-dev set to manually installed. libngtcp2-16 is already the newest version (1.24.0-1). libngtcp2-16 set to manually installed. libqt5printsupport5t64 is already the newest version (5.15.19+dfsg-6). libqt5printsupport5t64 set to manually installed. libngtcp2-crypto-gnutls8 is already the newest version (1.24.0-1). libngtcp2-crypto-gnutls8 set to manually installed. libmmdb2-dev is already the newest version (2.0.22-1+b3). libmmdb2-dev set to manually installed. libngtcp2-crypto-ossl-dev is already the newest version (1.24.0-1). libngtcp2-crypto-ossl-dev set to manually installed. libllvm22 is already the newest version (1:22.1.8-3). libllvm22 set to manually installed. libpixman-1-0 is already the newest version (0.46.4-1+b2). libpixman-1-0 set to manually installed. libp11-kit-dev is already the newest version (0.26.5-1). libp11-kit-dev set to manually installed. libqt5dbus5t64 is already the newest version (5.15.19+dfsg-6). libqt5dbus5t64 set to manually installed. libpython3-dev is already the newest version (3.14.8-1). libpython3-dev set to manually installed. libmagic-mgc is already the newest version (1:5.47-4). libmagic-mgc set to manually installed. libpkgconf7 is already the newest version (2.5.1-4). libpkgconf7 set to manually installed. libqt5test5t64 is already the newest version (5.15.19+dfsg-6). libqt5test5t64 set to manually installed. libpipeline1 is already the newest version (1.5.8-3). libpipeline1 set to manually installed. libmtdev1t64 is already the newest version (1.1.7-1+b2). libmtdev1t64 set to manually installed. liblzma5 is already the newest version (5.8.4-1). libqt5designer5 is already the newest version (5.15.19-2). libqt5designer5 set to manually installed. libpython3.14-minimal is already the newest version (3.14.10-1). libpython3.14-minimal set to manually installed. libpython3.14 is already the newest version (3.14.10-1). libpython3.14 set to manually installed. libpython3.15-dev is already the newest version (3.15.2-1). libpython3.15-dev set to manually installed. libmmdb2-0 is already the newest version (2.0.22-1+b3). libmmdb2-0 set to manually installed. liblz4-dev is already the newest version (1.10.0-10). liblz4-dev set to manually installed. liblzf1 is already the newest version (3.6-4+b4). liblzf1 set to manually installed. libnghttp2-dev is already the newest version (1.70.0-1). libnghttp2-dev set to manually installed. libncursesw6 is already the newest version (6.6+20260608-2). libncursesw6 set to manually installed. libldap-dev is already the newest version (2.6.14+dfsg-2). libldap-dev set to manually installed. libqt5help5 is already the newest version (5.15.19-2). libqt5help5 set to manually installed. libpam-runtime is already the newest version (1.7.0-8). libnghttp3-9 is already the newest version (1.17.0-1). libnghttp3-9 set to manually installed. libvorbisenc2 is already the newest version (1.3.7-3+b2). libvorbisenc2 set to manually installed. libuuid1 is already the newest version (2.42.4-1). libxcb-render0 is already the newest version (1.17.0-2+b2). libxcb-render0 set to manually installed. libselinux1 is already the newest version (3.11-2.1+b1). libxcb-icccm4 is already the newest version (0.4.2-1+b2). libxcb-icccm4 set to manually installed. libtasn1-6-dev is already the newest version (4.21.0-2+b1). libtasn1-6-dev set to manually installed. libssm2 is already the newest version (1.4.0-2+b4). libssm2 set to manually installed. libstdc++-16-dev is already the newest version (16.2.0-4). libstdc++-16-dev set to manually installed. libwayland-cursor0 is already the newest version (1.26.0-1). libwayland-cursor0 set to manually installed. libx11-xcb1 is already the newest version (2:1.8.14-1). libx11-xcb1 set to manually installed. librtmp1 is already the newest version (2.6-1). librtmp1 set to manually installed. libx11-6 is already the newest version (2:1.8.14-1). libx11-6 set to manually installed. libxdmcp6 is already the newest version (1:1.1.5-2+b1). libxdmcp6 set to manually installed. libssh2-1-dev is already the newest version (1.11.1-6). libssh2-1-dev set to manually installed. libwayland-client0 is already the newest version (1.26.0-1). libwayland-client0 set to manually installed. libraqm0 is already the newest version (0.10.5-1). libraqm0 set to manually installed. libsasl2-2 is already the newest version (2.1.28+dfsg1-12). libsasl2-2 set to manually installed. libsensors5 is already the newest version (1:3.6.2-2+b2). libsensors5 set to manually installed. libsensors-config is already the newest version (1:3.6.2-2). libsensors-config set to manually installed. libxcomposite1 is already the newest version (1:0.4.6-1+b2). libxcomposite1 set to manually installed. libxcb-xkb1 is already the newest version (1.17.0-2+b2). libxcb-xkb1 set to manually installed. libsystemd-shared is already the newest version (262.1-1). libsystemd-shared set to manually installed. libxcb-sync1 is already the newest version (1.17.0-2+b2). libxcb-sync1 set to manually installed. libxcb-randr0 is already the newest version (1.17.0-2+b2). libxcb-randr0 set to manually installed. libtinfo6 is already the newest version (6.6+20260608-2). libwayland-egl1 is already the newest version (1.26.0-1). libwayland-egl1 set to manually installed. libreadline8t64 is already the newest version (8.3-4). libreadline8t64 set to manually installed. libxcb-present0 is already the newest version (1.17.0-2+b2). libxcb-present0 set to manually installed. libvorbis0a is already the newest version (1.3.7-3+b2). libvorbis0a set to manually installed. libssl3t64 is already the newest version (3.6.5-1). libsharpyuv0 is already the newest version (1.6.0-0.1). libsharpyuv0 set to manually installed. libsystemd0 is already the newest version (262.1-1). libx11-data is already the newest version (2:1.8.14-1). libx11-data set to manually installed. libwxgtk-gl3.2-1t64 is already the newest version (3.2.11+dfsg1-2). libwxgtk-gl3.2-1t64 set to manually installed. librtmp-dev is already the newest version (2.6-1). librtmp-dev set to manually installed. libsqlite3-0 is already the newest version (3.53.4-2). libsqlite3-0 set to manually installed. libssl-dev is already the newest version (3.6.5-1). libssl-dev set to manually installed. libtiff-dev is already the newest version (4.7.2-1). libtiff-dev set to manually installed. libunistring-dev is already the newest version (1.4.2-1). libunistring-dev set to manually installed. libtiffxx6 is already the newest version (4.7.2-1). libtiffxx6 set to manually installed. libxcb1 is already the newest version (1.17.0-2+b2). libxcb1 set to manually installed. libsframe3 is already the newest version (2.47.50.20261021-1). libsframe3 set to manually installed. libxcb-render-util0 is already the newest version (0.3.10-1+b2). libxcb-render-util0 set to manually installed. libwacom-common is already the newest version (2.20.0-1). libwacom-common set to manually installed. libqt5xml5t64 is already the newest version (5.15.19+dfsg-6). libqt5xml5t64 set to manually installed. libxau6 is already the newest version (1:1.0.11-1+b2). libxau6 set to manually installed. libtiff6 is already the newest version (4.7.2-1). libtiff6 set to manually installed. libwxgtk3.2-1t64 is already the newest version (3.2.11+dfsg1-2). libwxgtk3.2-1t64 set to manually installed. libwacom9 is already the newest version (2.20.0-1). libwacom9 set to manually installed. libtcl8.6 is already the newest version (8.6.18+dfsg-1). libtcl8.6 set to manually installed. libwebp7 is already the newest version (1.6.0-0.1). libwebp7 set to manually installed. libxcb-shm0 is already the newest version (1.17.0-2+b2). libxcb-shm0 set to manually installed. libsharpyuv-dev is already the newest version (1.6.0-0.1). libsharpyuv-dev set to manually installed. libxdmcp-dev is already the newest version (1:1.1.5-2+b1). libxdmcp-dev set to manually installed. libtasn1-6 is already the newest version (4.21.0-2+b1). libtasn1-6 set to manually installed. libstdc++6 is already the newest version (16.2.0-4). libstdc++6 set to manually installed. libxau-dev is already the newest version (1:1.0.11-1+b2). libxau-dev set to manually installed. libsm6 is already the newest version (2:1.2.6-1+b2). libsm6 set to manually installed. libxcb-xinerama0 is already the newest version (1.17.0-2+b2). libxcb-xinerama0 set to manually installed. libx11-dev is already the newest version (2:1.8.14-1). libx11-dev set to manually installed. libxcb-util1 is already the newest version (0.4.1-1+b2). libxcb-util1 set to manually installed. libwebpdecoder3 is already the newest version (1.6.0-0.1). libwebpdecoder3 set to manually installed. librsvg2-2 is already the newest version (2.63.3+dfsg-1). librsvg2-2 set to manually installed. libtsan2 is already the newest version (16.2.0-4). libtsan2 set to manually installed. libxcb-keysyms1 is already the newest version (0.4.1-1+b2). libxcb-keysyms1 set to manually installed. libudev1 is already the newest version (262.1-1). libxcb-xinput0 is already the newest version (1.17.0-2+b2). libxcb-xinput0 set to manually installed. libxcb-xfixes0 is already the newest version (1.17.0-2+b2). libxcb-xfixes0 set to manually installed. libxcb-shape0 is already the newest version (1.17.0-2+b2). libxcb-shape0 set to manually installed. libssm-dev is already the newest version (1.4.0-2+b4). libssm-dev set to manually installed. librdmacm1t64 is already the newest version (65.0-1.1). librdmacm1t64 set to manually installed. libwebpmux3 is already the newest version (1.6.0-0.1). libwebpmux3 set to manually installed. libuchardet0 is already the newest version (0.0.8-2+b2). libuchardet0 set to manually installed. libxcb-dri3-0 is already the newest version (1.17.0-2+b2). libxcb-dri3-0 set to manually installed. libsz2 is already the newest version (1.1.7-1). libsz2 set to manually installed. libxcb-image0 is already the newest version (0.4.0-2+b3). libxcb-image0 set to manually installed. libxcb1-dev is already the newest version (1.17.0-2+b2). libxcb1-dev set to manually installed. libthai0 is already the newest version (0.1.30-3). libthai0 set to manually installed. libtool is already the newest version (2.6.2-3). libtool set to manually installed. libthai-data is already the newest version (0.1.30-3). libthai-data set to manually installed. libunistring5 is already the newest version (1.4.2-1). libunistring5 set to manually installed. libucx0 is already the newest version (1.23.0~rc1-1). libucx0 set to manually installed. libsvtav1enc4 is already the newest version (4.2.0+dfsg-3). libsvtav1enc4 set to manually installed. libunbound8 is already the newest version (1.26.2-1). libunbound8 set to manually installed. libwxbase3.2-1t64 is already the newest version (3.2.11+dfsg1-2). libwxbase3.2-1t64 set to manually installed. libsdl2-2.0-0 is already the newest version (2.32.74+ds-1). libsdl2-2.0-0 set to manually installed. libwebpdemux2 is already the newest version (1.6.0-0.1). libwebpdemux2 set to manually installed. libsasl2-modules-db is already the newest version (2.1.28+dfsg1-12). libsasl2-modules-db set to manually installed. libvulkan1 is already the newest version (1.4.363.0-1). libvulkan1 set to manually installed. libssh2-1t64 is already the newest version (1.11.1-6). libssh2-1t64 set to manually installed. libsdl3-0 is already the newest version (3.4.18+ds-1). libsdl3-0 set to manually installed. libxcursor1 is already the newest version (1:1.2.3-1+b2). libxcursor1 set to manually installed. libubsan1 is already the newest version (16.2.0-4). libubsan1 set to manually installed. libsndfile1 is already the newest version (1.2.2-4+b1). libsndfile1 set to manually installed. libtk8.6 is already the newest version (8.6.18-1). libtk8.6 set to manually installed. libwebp-dev is already the newest version (1.6.0-0.1). libwebp-dev set to manually installed. libxcb-glx0 is already the newest version (1.17.0-2+b2). libxcb-glx0 set to manually installed. libxdamage1 is already the newest version (1:1.1.7-1+b1). libxdamage1 set to manually installed. libseccomp2 is already the newest version (2.6.1-1+b2). libseccomp2 set to manually installed. libsmartcols1 is already the newest version (2.42.4-1). libzstd-dev is already the newest version (1.5.7+dfsg-4). libzstd-dev set to manually installed. python3-pint is already the newest version (0.26.2-1). python3-pint set to manually installed. libxxhash0 is already the newest version (0.8.3-2+b2). libxxhash0 set to manually installed. python3-contourpy is already the newest version (1.3.3-3). python3-contourpy set to manually installed. python3-brotli is already the newest version (1.2.0-4.1). python3-brotli set to manually installed. python3-hatchling is already the newest version (1.32.4-1). python3-hatchling set to manually installed. ocl-icd-libopencl1 is already the newest version (2.3.4-1+b1). ocl-icd-libopencl1 set to manually installed. python3-ordered-set is already the newest version (4.1.0-1). python3-ordered-set set to manually installed. python3-opengl is already the newest version (3.1.10+dfsg-1). python3-opengl set to manually installed. make is already the newest version (4.4.1-3+b1). make set to manually installed. python3-decorator is already the newest version (5.3.1-1). python3-decorator set to manually installed. libxext6 is already the newest version (2:1.3.4-1+b4). libxext6 set to manually installed. python3-natsort is already the newest version (8.4.0-2). python3-natsort set to manually installed. libxnvctrl0 is already the newest version (535.171.04-1+b3). libxnvctrl0 set to manually installed. libxslt1.1 is already the newest version (1.1.45-0.1). libxslt1.1 set to manually installed. python3-hdf5plugin is already the newest version (7.1.0-2). python3-hdf5plugin set to manually installed. python3-editables is already the newest version (0.6-1). python3-editables set to manually installed. libxfixes3 is already the newest version (1:6.0.0-2+b5). libxfixes3 set to manually installed. libxkbcommon0 is already the newest version (1.13.1-1). libxkbcommon0 set to manually installed. python3 is already the newest version (3.14.8-1). python3 set to manually installed. python3-pil is already the newest version (13.0.0-1+b1). python3-pil set to manually installed. perl-base is already the newest version (5.42.3-1). perl is already the newest version (5.42.3-1). perl set to manually installed. media-types is already the newest version (14.0.0). media-types set to manually installed. libzopfli1 is already the newest version (1.0.3-3+b1). libzopfli1 set to manually installed. python3-cairo is already the newest version (1.29.1-1+b1). python3-cairo set to manually installed. python3-kiwisolver is already the newest version (1.5.1-1+b1). python3-kiwisolver set to manually installed. pymol-data is already the newest version (3.1.0+dfsg-1). pymol-data set to manually installed. libxrender1 is already the newest version (1:0.9.13-1). libxrender1 set to manually installed. libyaml-0-2 is already the newest version (0.2.5-2+b1). libyaml-0-2 set to manually installed. openssl-provider-legacy is already the newest version (3.6.5-1). python3-certifi is already the newest version (2026.10.23+ds-1). python3-certifi set to manually installed. python3-legacy-cgi is already the newest version (2.6.4-3). python3-legacy-cgi set to manually installed. python3-fonttools is already the newest version (4.65.0-1+b1). python3-fonttools set to manually installed. procps is already the newest version (2:4.0.7-1). procps set to manually installed. libzstd1 is already the newest version (1.5.7+dfsg-4). python3-lz4 is already the newest version (4.4.5+dfsg-1+b3). python3-lz4 set to manually installed. python3-packaging is already the newest version (26.2-3). python3-packaging set to manually installed. libxxf86vm1 is already the newest version (1:1.1.4-2+b1). libxxf86vm1 set to manually installed. netbase is already the newest version (6.6). netbase set to manually installed. libxi6 is already the newest version (2:1.8.4-1). libxi6 set to manually installed. python3-h5py is already the newest version (3.16.0-8). python3-h5py set to manually installed. linux-libc-dev is already the newest version (7.2.12-1). linux-libc-dev set to manually installed. python3-nxmx is already the newest version (0.0.7-1). python3-nxmx set to manually installed. patch is already the newest version (2.8.1-1). patch set to manually installed. mesa-libgallium is already the newest version (26.2.6-1). mesa-libgallium set to manually installed. python3-all is already the newest version (3.14.8-1). python3-all set to manually installed. python3-pil.imagetk is already the newest version (13.0.0-1+b1). python3-pil.imagetk set to manually installed. pkgconf is already the newest version (2.5.1-4). pkgconf set to manually installed. python-matplotlib-data is already the newest version (3.10.9+dfsg1-2). python-matplotlib-data set to manually installed. python3-installer is already the newest version (1.1.0+dfsg1-1). python3-installer set to manually installed. perl-modules-5.42 is already the newest version (5.42.3-1). perl-modules-5.42 set to manually installed. python3-biopython is already the newest version (1.88+dfsg-2+b2). python3-biopython set to manually installed. man-db is already the newest version (2.13.1-1+b1). man-db set to manually installed. ncurses-base is already the newest version (6.6+20260608-2). python3-pathspec is already the newest version (1.1.1-3). python3-pathspec set to manually installed. m4 is already the newest version (1.4.21-1). m4 set to manually installed. nettle-dev is already the newest version (3.10.2-1+b1). nettle-dev set to manually installed. python3-h5py-serial is already the newest version (3.16.0-8). python3-h5py-serial set to manually installed. libxkbcommon-x11-0 is already the newest version (1.13.1-1). libxkbcommon-x11-0 set to manually installed. mawk is already the newest version (1.3.4.20260302-2). python3-numpy is already the newest version (1:2.4.6+ds-5+b1). python3-numpy set to manually installed. python3-build is already the newest version (1.5.1-1). python3-build set to manually installed. libxml2-16 is already the newest version (2.15.4+dfsg-1+b1). libxml2-16 set to manually installed. libxft2 is already the newest version (2.3.6-1+b5). libxft2 set to manually installed. python3-iniconfig is already the newest version (2.1.0-2). python3-iniconfig set to manually installed. python3-freetype is already the newest version (2.5.1-3). python3-freetype set to manually installed. python3-idna is already the newest version (3.20-1). python3-idna set to manually installed. python3-attr is already the newest version (26.1.0-1). python3-attr set to manually installed. python3-charset-normalizer is already the newest version (3.4.7-2+b3). python3-charset-normalizer set to manually installed. po-debconf is already the newest version (1.0.22). po-debconf set to manually installed. python3-msgpack is already the newest version (1.2.1-3). python3-msgpack set to manually installed. libz3-4 is already the newest version (4.13.3-1.1). libz3-4 set to manually installed. openssl is already the newest version (3.6.5-1). openssl set to manually installed. python3-cycler is already the newest version (0.12.1-3). python3-cycler set to manually installed. python3-flexparser is already the newest version (0.4-2). python3-flexparser set to manually installed. pkgconf-bin is already the newest version (2.5.1-4). pkgconf-bin set to manually installed. python3-minimal is already the newest version (3.14.8-1). python3-minimal set to manually installed. python3-mrcfile is already the newest version (1.5.4-4). python3-mrcfile set to manually installed. libxrandr2 is already the newest version (2:1.5.4-1+b4). libxrandr2 set to manually installed. python3-matplotlib is already the newest version (3.10.9+dfsg1-2+b1). python3-matplotlib set to manually installed. python3-mpmath is already the newest version (1.4.1-4). python3-mpmath set to manually installed. python3-lxml is already the newest version (6.1.3-1.1). python3-lxml set to manually installed. pci.ids is already the newest version (0.0~2026.10.24-1). pci.ids set to manually installed. python3-numpy-dev is already the newest version (1:2.4.6+ds-5+b1). python3-numpy-dev set to manually installed. libxtst6 is already the newest version (2:1.2.6-1). libxtst6 set to manually installed. ncurses-bin is already the newest version (6.6+20260608-2). libyuv0 is already the newest version (0.0.1974.20261008-1). libyuv0 set to manually installed. libxres1 is already the newest version (2:1.2.1-2). libxres1 set to manually installed. libxxhash-dev is already the newest version (0.8.3-2+b2). libxxhash-dev set to manually installed. python3-chardet is already the newest version (5.2.0+dfsg-2). python3-chardet set to manually installed. python3-all-dev is already the newest version (3.14.8-1). python3-all-dev set to manually installed. libxinerama1 is already the newest version (2:1.1.4-3+b5). libxinerama1 set to manually installed. pybind11-dev is already the newest version (3.1.0-2). pybind11-dev set to manually installed. libxshmfence1 is already the newest version (1.3.3-1+b2). libxshmfence1 set to manually installed. python3-flexcache is already the newest version (0.3-3). python3-flexcache set to manually installed. pybuild-plugin-pyproject is already the newest version (7.20261030). pybuild-plugin-pyproject set to manually installed. python3-dev is already the newest version (3.14.8-1). python3-dev set to manually installed. python3-dateutil is already the newest version (3.0.0-2). python3-dateutil set to manually installed. libxss1 is already the newest version (1:1.2.3-1+b4). libxss1 set to manually installed. python3-pyqt5.sip is already the newest version (12.19.0-1+b2). python3-pyqt5.sip set to manually installed. tzdata is already the newest version (2026f-1). tzdata set to manually installed. python3-zopfli is already the newest version (0.4.3-2). python3-zopfli set to manually installed. python3-yaml is already the newest version (6.0.3-1+b3). python3-yaml set to manually installed. user-session-migration is already the newest version (0.5.2). user-session-migration set to manually installed. shared-mime-info is already the newest version (2.4-5+b2). shared-mime-info set to manually installed. python3-tomlkit is already the newest version (0.13.3-3). python3-tomlkit set to manually installed. xkb-data is already the newest version (2.48-1). xkb-data set to manually installed. zlib1g is already the newest version (1:1.3.dfsg+really1.3.2-4). python3-pytest is already the newest version (9.1.1-1). python3-pytest set to manually installed. python3.14-dev is already the newest version (3.14.10-1). python3.14-dev set to manually installed. python3.14-minimal is already the newest version (3.14.10-1). python3.14-minimal set to manually installed. python3-tk is already the newest version (3.14.8-1). python3-tk set to manually installed. sed is already the newest version (4.9-3). python3-trove-classifiers is already the newest version (2026.9.21.13-1). python3-trove-classifiers set to manually installed. python3-ufolib2 is already the newest version (0.18.1+dfsg1-2). python3-ufolib2 set to manually installed. python3.14 is already the newest version (3.14.10-1). python3.14 set to manually installed. sysvinit-utils is already the newest version (3.18-1). python3-uharfbuzz is already the newest version (0.53.3-1). python3-uharfbuzz set to manually installed. python3-scipy is already the newest version (1.17.1-5+b2). python3-scipy set to manually installed. python3-setuptools is already the newest version (84.2.0-1). python3-setuptools set to manually installed. python3-platformdirs is already the newest version (4.11.9-1). python3-platformdirs set to manually installed. xtrans-dev is already the newest version (1.6.0-1). xtrans-dev set to manually installed. python3-pyparsing is already the newest version (3.3.3-2). python3-pyparsing set to manually installed. xfonts-utils is already the newest version (1:7.7+7+b1). xfonts-utils set to manually installed. python3-tqdm is already the newest version (4.70.1-1). python3-tqdm set to manually installed. python3.15-dev is already the newest version (3.15.2-1). python3.15-dev set to manually installed. python3-pyproject-hooks is already the newest version (1.3.3-1). python3-pyproject-hooks set to manually installed. systemd-sysv is already the newest version (262.1-1). systemd-sysv set to manually installed. python3-pluggy is already the newest version (1.6.0-2). python3-pluggy set to manually installed. python3-typing-extensions is already the newest version (4.16.0-5). python3-typing-extensions set to manually installed. python3.15-minimal is already the newest version (3.15.2-1). python3.15-minimal set to manually installed. scons is already the newest version (4.10.1+dfsg-2). scons set to manually installed. readline-common is already the newest version (8.3-4). readline-common set to manually installed. sfftw2 is already the newest version (2.1.5-8). sfftw2 set to manually installed. xml-core is already the newest version (0.21). xml-core set to manually installed. xorg-sgml-doctools is already the newest version (1:1.12.1-1). xorg-sgml-doctools set to manually installed. python3-wxgtk4.0 is already the newest version (4.2.5+dfsg-3+b1). python3-wxgtk4.0 set to manually installed. util-linux is already the newest version (2.42.4-1). x11-common is already the newest version (1:7.7+26). x11-common set to manually installed. sphinx-rtd-theme-common is already the newest version (3.1.0+dfsg-4). sphinx-rtd-theme-common set to manually installed. unicode-data is already the newest version (17.0.0-2). unicode-data set to manually installed. python3.15 is already the newest version (3.15.2-1). python3.15 set to manually installed. python3-pymol is already the newest version (3.1.0+dfsg-1+b3). python3-pymol set to manually installed. sensible-utils is already the newest version (0.0.26). sensible-utils set to manually installed. rsync is already the newest version (3.5.1+ds1-2). rsync set to manually installed. python3-wheel is already the newest version (0.47.0-2). python3-wheel set to manually installed. x11proto-dev is already the newest version (2025.1-1). x11proto-dev set to manually installed. python3-pygments is already the newest version (2.20.0+dfsg-2). python3-pygments set to manually installed. python3-urllib3 is already the newest version (2.8.0-2). python3-urllib3 set to manually installed. w3c-sgml-lib is already the newest version (1.3-3). w3c-sgml-lib set to manually installed. zlib1g-dev is already the newest version (1:1.3.dfsg+really1.3.2-4). zlib1g-dev set to manually installed. python3-rlpycairo is already the newest version (0.3.0-4). python3-rlpycairo set to manually installed. python3-reportlab is already the newest version (5.1.0-1). python3-reportlab set to manually installed. python3-requests is already the newest version (2.34.2-1). python3-requests set to manually installed. python3-pyqt5 is already the newest version (5.15.11+dfsg-7). python3-pyqt5 set to manually installed. tar is already the newest version (1.35+dfsg-7). python3-six is already the newest version (1.17.0-3). python3-six set to manually installed. python3.14-tk is already the newest version (3.14.10-1). python3.14-tk set to manually installed. xfonts-encodings is already the newest version (1:1.0.4-2.2). xfonts-encodings set to manually installed. python3-sympy is already the newest version (1.14.0-6). python3-sympy set to manually installed. python3-pyqt5.qtopengl is already the newest version (5.15.11+dfsg-7). python3-pyqt5.qtopengl set to manually installed. sgml-base is already the newest version (1.31+nmu1). sgml-base set to manually installed. python3-pip is already the newest version (26.2.2+dfsg-1). python3-pip set to manually installed. sfftw-dev is already the newest version (2.1.5-8). sfftw-dev set to manually installed. xz-utils is already the newest version (5.8.4-1). xz-utils set to manually installed. systemd is already the newest version (262.1-1). systemd set to manually installed. python3.15-tk is already the newest version (3.15.2-1). python3.15-tk set to manually installed. python3-psutil is already the newest version (7.2.2-3). python3-psutil set to manually installed. python3-pycbf is already the newest version (0.9.7+dfsg1-5.1+b4). python3-pycbf set to manually installed. python3-procrunner is already the newest version (2.3.3-2). python3-procrunner set to manually installed. Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg -r debootsnap-dummy' exec /srv/rebuilderd/tmp/mmdebstrap.LmSdfXYxcH (Reading database ... 65598 files and directories currently installed.) Removing debootsnap-dummy (1.0) ... I: running --customize-hook in shell: sh -c 'chroot "$1" dpkg-query --showformat '${binary:Package}=${Version}\n' --show > "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.LmSdfXYxcH I: running special hook: download /pkglist ./pkglist I: running --customize-hook in shell: sh -c 'rm "$1/pkglist"' exec /srv/rebuilderd/tmp/mmdebstrap.LmSdfXYxcH I: running special hook: upload sources.list /etc/apt/sources.list I: waiting for background processes to finish... I: cleaning package lists and apt cache... I: skipping cleanup/reproducible as requested I: creating tarball... I: done I: removing tempdir /srv/rebuilderd/tmp/mmdebstrap.LmSdfXYxcH... I: success in 311.5116 seconds Downloading packages 1 to 100 out of 671 Downloading packages 101 to 200 out of 671 Downloading packages 201 to 300 out of 671 Downloading packages 301 to 400 out of 671 Downloading packages 401 to 500 out of 671 Downloading packages 501 to 600 out of 671 Downloading packages 601 to 671 out of 671 env --chdir=/srv/rebuilderd/tmp/rebuilderd1gR4oS/out DEB_BUILD_OPTIONS=parallel=8 LANG=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 SOURCE_DATE_EPOCH=1791228811 SBUILD_CONFIG=/srv/rebuilderd/tmp/debrebuilduOZ6qw/debrebuild.sbuildrc.OiarZDbN0M1E sbuild --build=loong64 --host=loong64 --arch-any --no-arch-all --binNMU-changelog= cctbx (2026.9+ds2+~3.30.1+ds1-1+b2) sid; urgency=low, binary-only=yes * Binary-only non-maintainer upload for loong64; no source changes. * Rebuild with Python 3.15 as supported version -- loong64 Build Daemon (loongson-conova-02) Mon, 05 Oct 2026 19:33:31 +0000 --chroot=/srv/rebuilderd/tmp/debrebuilduOZ6qw/debrebuild.tar.IHv0K9856fek --chroot-mode=unshare --dist=unstable --no-run-lintian --no-run-piuparts --no-run-autopkgtest --no-apt-update --no-apt-upgrade --no-apt-distupgrade --no-source --verbose --nolog --bd-uninstallable-explainer= --build-path=/build/reproducible-path --dsc-dir=cctbx-2026.9+ds2+~3.30.1+ds1 /srv/rebuilderd/tmp/rebuilderd1gR4oS/inputs/cctbx_2026.9+ds2+~3.30.1+ds1-1.dsc I: consider moving your ~/.sbuildrc to /srv/rebuilderd/.config/sbuild/config.pl sbuild: warning: descr(l1): found blank line where expected first heading sbuild (Debian sbuild) 0.91.11 (30 October 2026) on loong64-02 +==============================================================================+ | cctbx 2026.9+ds2+~3.30.1+ds1-1+b2 (loong64) Fri, 06 Nov 2026 05:47:32 +0000 | +==============================================================================+ Package: cctbx Version: 2026.9+ds2+~3.30.1+ds1-1+b2 Source Version: 2026.9+ds2+~3.30.1+ds1-1 Distribution: unstable Machine Architecture: loong64 Host Architecture: loong64 Build Architecture: loong64 Build Type: any I: No tarballs found in /srv/rebuilderd/.cache/sbuild I: Unpacking /srv/rebuilderd/tmp/debrebuilduOZ6qw/debrebuild.tar.IHv0K9856fek to /srv/rebuilderd/tmp/tmp.sbuild.6nX8NE4HsS... I: Setting up the chroot... I: Creating chroot session... I: Setting up log color... I: Setting up apt archive... +------------------------------------------------------------------------------+ | Fetch source files Fri, 06 Nov 2026 05:47:49 +0000 | +------------------------------------------------------------------------------+ Local sources ------------- /srv/rebuilderd/tmp/rebuilderd1gR4oS/inputs/cctbx_2026.9+ds2+~3.30.1+ds1-1.dsc exists in /srv/rebuilderd/tmp/rebuilderd1gR4oS/inputs; copying to chroot sbuild: warning: descr(l1): found blank line where expected first heading +------------------------------------------------------------------------------+ | Install package build dependencies Fri, 06 Nov 2026 05:47:51 +0000 | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, dh-sequence-numpy3, dh-sequence-python3, architecture-is-64-bit, jq, libann-cctbx-dev (>= 1.1.2+doc-9~), libantlr3c-dev, libboost-dev, libboost-numpy-dev, libboost-python-dev, libboost-thread-dev, libboost-timer-dev, libcbf-dev (>= 0.9.7+dfsg1-2~), libclipper-dev, libeigen3-dev, libexpat1-dev, libfftw3-dev, libgl-dev, libglu1-mesa-dev, libhdf5-dev, liblz4-dev, libssm-dev, libtiff-dev, libtool, pybind11-dev, pybuild-plugin-pyproject, python3-all-dev:any, python3-biopython, python3-editables, python3-h5py (>= 3), python3-hatchling, python3-hdf5plugin, python3-legacy-cgi, python3-matplotlib, python3-mrcfile, python3-msgpack, python3-natsort, python3-numpy, python3-nxmx, python3-ordered-set, python3-pint, python3-pip, python3-procrunner, python3-psutil, python3-pycbf (>= 0.9.7+dfsg1-2~), python3-pymol, python3-pytest, python3-requests, python3-scipy, python3-setuptools, python3-six, python3-tqdm, python3-wxgtk4.0, python3-yaml, rsync, scons, build-essential Filtered Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, dh-sequence-numpy3, dh-sequence-python3, architecture-is-64-bit, jq, libann-cctbx-dev (>= 1.1.2+doc-9~), libantlr3c-dev, libboost-dev, libboost-numpy-dev, libboost-python-dev, libboost-thread-dev, libboost-timer-dev, libcbf-dev (>= 0.9.7+dfsg1-2~), libclipper-dev, libeigen3-dev, libexpat1-dev, libfftw3-dev, libgl-dev, libglu1-mesa-dev, libhdf5-dev, liblz4-dev, libssm-dev, libtiff-dev, libtool, pybind11-dev, pybuild-plugin-pyproject, python3-all-dev:any, python3-biopython, python3-editables, python3-h5py (>= 3), python3-hatchling, python3-hdf5plugin, python3-legacy-cgi, python3-matplotlib, python3-mrcfile, python3-msgpack, python3-natsort, python3-numpy, python3-nxmx, python3-ordered-set, python3-pint, python3-pip, python3-procrunner, python3-psutil, python3-pycbf (>= 0.9.7+dfsg1-2~), python3-pymol, python3-pytest, python3-requests, python3-scipy, python3-setuptools, python3-six, python3-tqdm, python3-wxgtk4.0, python3-yaml, rsync, scons, build-essential dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/build/reproducible-path/resolver-DS2StT/apt_archive/sbuild-build-depends-main-dummy.deb'. Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies +------------------------------------------------------------------------------+ | Check architectures Fri, 06 Nov 2026 05:47:57 +0000 | +------------------------------------------------------------------------------+ Arch check ok (loong64 included in amd64 arm64 armel armhf i386 loong64 ppc64 ppc64el riscv64 s390x) +------------------------------------------------------------------------------+ | Build environment Fri, 06 Nov 2026 05:47:58 +0000 | +------------------------------------------------------------------------------+ Kernel: Linux 7.2.12+deb14-loong64 #1 SMP PREEMPT Debian 7.2.12-1 (2026-10-22) loong64 (loongarch64) Toolchain package versions: binutils_2.47.50.20261021-1 dpkg-dev_1.23.11 g++-16_16.2.0-4 gcc-16_16.2.0-4 libc6-dev_2.43-7 libstdc++-16-dev_16.2.0-4 libstdc++6_16.2.0-4 linux-libc-dev_7.2.12-1 Package versions: 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linux-libc-dev_7.2.12-1 m4_1.4.21-1 make_4.4.1-3+b1 man-db_2.13.1-1+b1 mawk_1.3.4.20260302-2 media-types_14.0.0 mesa-libgallium_26.2.6-1 ncurses-base_6.6+20260608-2 ncurses-bin_6.6+20260608-2 netbase_6.6 nettle-dev_3.10.2-1+b1 ocl-icd-libopencl1_2.3.4-1+b1 openssl_3.6.5-1 openssl-provider-legacy_3.6.5-1 patch_2.8.1-1 pci.ids_0.0~2026.10.24-1 perl_5.42.3-1 perl-base_5.42.3-1 perl-modules-5.42_5.42.3-1 pkgconf_2.5.1-4 pkgconf-bin_2.5.1-4 po-debconf_1.0.22 procps_2:4.0.7-1 pybind11-dev_3.1.0-2 pybuild-plugin-pyproject_7.20261030 pymol-data_3.1.0+dfsg-1 python-matplotlib-data_3.10.9+dfsg1-2 python3_3.14.8-1 python3-all_3.14.8-1 python3-all-dev_3.14.8-1 python3-attr_26.1.0-1 python3-biopython_1.88+dfsg-2+b2 python3-brotli_1.2.0-4.1 python3-build_1.5.1-1 python3-cairo_1.29.1-1+b1 python3-certifi_2026.10.23+ds-1 python3-chardet_5.2.0+dfsg-2 python3-charset-normalizer_3.4.7-2+b3 python3-contourpy_1.3.3-3 python3-cycler_0.12.1-3 python3-dateutil_3.0.0-2 python3-decorator_5.3.1-1 python3-dev_3.14.8-1 python3-editables_0.6-1 python3-flexcache_0.3-3 python3-flexparser_0.4-2 python3-fonttools_4.65.0-1+b1 python3-freetype_2.5.1-3 python3-h5py_3.16.0-8 python3-h5py-serial_3.16.0-8 python3-hatchling_1.32.4-1 python3-hdf5plugin_7.1.0-2 python3-idna_3.20-1 python3-iniconfig_2.1.0-2 python3-installer_1.1.0+dfsg1-1 python3-kiwisolver_1.5.1-1+b1 python3-legacy-cgi_2.6.4-3 python3-lxml_6.1.3-1.1 python3-lz4_4.4.5+dfsg-1+b3 python3-matplotlib_3.10.9+dfsg1-2+b1 python3-minimal_3.14.8-1 python3-mpmath_1.4.1-4 python3-mrcfile_1.5.4-4 python3-msgpack_1.2.1-3 python3-natsort_8.4.0-2 python3-numpy_1:2.4.6+ds-5+b1 python3-numpy-dev_1:2.4.6+ds-5+b1 python3-nxmx_0.0.7-1 python3-opengl_3.1.10+dfsg-1 python3-ordered-set_4.1.0-1 python3-packaging_26.2-3 python3-pathspec_1.1.1-3 python3-pil_13.0.0-1+b1 python3-pil.imagetk_13.0.0-1+b1 python3-pint_0.26.2-1 python3-pip_26.2.2+dfsg-1 python3-platformdirs_4.11.9-1 python3-pluggy_1.6.0-2 python3-procrunner_2.3.3-2 python3-psutil_7.2.2-3 python3-pycbf_0.9.7+dfsg1-5.1+b4 python3-pygments_2.20.0+dfsg-2 python3-pymol_3.1.0+dfsg-1+b3 python3-pyparsing_3.3.3-2 python3-pyproject-hooks_1.3.3-1 python3-pyqt5_5.15.11+dfsg-7 python3-pyqt5.qtopengl_5.15.11+dfsg-7 python3-pyqt5.sip_12.19.0-1+b2 python3-pytest_9.1.1-1 python3-reportlab_5.1.0-1 python3-requests_2.34.2-1 python3-rlpycairo_0.3.0-4 python3-scipy_1.17.1-5+b2 python3-setuptools_84.2.0-1 python3-six_1.17.0-3 python3-sympy_1.14.0-6 python3-tk_3.14.8-1 python3-tomlkit_0.13.3-3 python3-tqdm_4.70.1-1 python3-trove-classifiers_2026.9.21.13-1 python3-typing-extensions_4.16.0-5 python3-ufolib2_0.18.1+dfsg1-2 python3-uharfbuzz_0.53.3-1 python3-urllib3_2.8.0-2 python3-wheel_0.47.0-2 python3-wxgtk4.0_4.2.5+dfsg-3+b1 python3-yaml_6.0.3-1+b3 python3-zopfli_0.4.3-2 python3.14_3.14.10-1 python3.14-dev_3.14.10-1 python3.14-minimal_3.14.10-1 python3.14-tk_3.14.10-1 python3.15_3.15.2-1 python3.15-dev_3.15.2-1 python3.15-minimal_3.15.2-1 python3.15-tk_3.15.2-1 readline-common_8.3-4 rsync_3.5.1+ds1-2 scons_4.10.1+dfsg-2 sed_4.9-3 sensible-utils_0.0.26 sfftw-dev_2.1.5-8 sfftw2_2.1.5-8 sgml-base_1.31+nmu1 shared-mime-info_2.4-5+b2 sphinx-rtd-theme-common_3.1.0+dfsg-4 systemd_262.1-1 systemd-sysv_262.1-1 sysvinit-utils_3.18-1 tar_1.35+dfsg-7 tzdata_2026f-1 unicode-data_17.0.0-2 user-session-migration_0.5.2 util-linux_2.42.4-1 w3c-sgml-lib_1.3-3 x11-common_1:7.7+26 x11proto-dev_2025.1-1 xfonts-encodings_1:1.0.4-2.2 xfonts-utils_1:7.7+7+b1 xkb-data_2.48-1 xml-core_0.21 xorg-sgml-doctools_1:1.12.1-1 xtrans-dev_1.6.0-1 xz-utils_5.8.4-1 zlib1g_1:1.3.dfsg+really1.3.2-4 zlib1g-dev_1:1.3.dfsg+really1.3.2-4 +------------------------------------------------------------------------------+ | Build Fri, 06 Nov 2026 05:47:58 +0000 | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: cctbx Binary: libcctbx0, libcctbx-dev, python3-cctbx Architecture: amd64 arm64 armel armhf i386 loong64 ppc64 ppc64el riscv64 s390x Version: 2026.9+ds2+~3.30.1+ds1-1 Maintainer: Debian Science Maintainers Uploaders: Picca Frédéric-Emmanuel , Radostan Riedel , Roland Mas , Homepage: https://github.com/cctbx/cctbx_project Standards-Version: 4.7.3 Vcs-Browser: https://salsa.debian.org/science-team/cctbx Vcs-Git: https://salsa.debian.org/science-team/cctbx.git Testsuite: autopkgtest Testsuite-Triggers: bitshuffle, g++, python3-all, python3-dials-data, python3-h5py, python3-pytest, python3-pytest-mock, python3-pytest-regressions, python3-yaml Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, dh-sequence-numpy3, dh-sequence-python3, architecture-is-64-bit, jq, libann-cctbx-dev (>= 1.1.2+doc-9~), libantlr3c-dev, libboost-dev, libboost-numpy-dev, libboost-python-dev, libboost-thread-dev, libboost-timer-dev, libcbf-dev (>= 0.9.7+dfsg1-2~), libclipper-dev, libeigen3-dev, libexpat1-dev, libfftw3-dev, libgl-dev, libglu1-mesa-dev, libhdf5-dev, liblz4-dev, libssm-dev, libtiff-dev, libtool, pybind11-dev, pybuild-plugin-pyproject, python3-all-dev:any, python3-biopython , python3-editables, python3-h5py (>= 3) , python3-hatchling, python3-hdf5plugin , python3-legacy-cgi , python3-matplotlib , python3-mrcfile , python3-msgpack , python3-natsort , python3-numpy , python3-nxmx , python3-ordered-set , python3-pint , python3-pip, python3-procrunner , python3-psutil , python3-pycbf (>= 0.9.7+dfsg1-2~) , python3-pymol , python3-pytest , python3-requests , python3-scipy , python3-setuptools, python3-six, python3-tqdm , python3-wxgtk4.0 , python3-yaml , rsync, scons Package-List: libcctbx-dev deb libdevel optional arch=amd64,arm64,armel,armhf,i386,loong64,ppc64,ppc64el,riscv64,s390x libcctbx0 deb libs optional arch=amd64,arm64,armel,armhf,i386,loong64,ppc64,ppc64el,riscv64,s390x python3-cctbx deb python optional arch=amd64,arm64,armel,armhf,i386,loong64,ppc64,ppc64el,riscv64,s390x Checksums-Sha1: 5c903216ffbf817c6f52a80d9f7812c7a6223245 402668 cctbx_2026.9+ds2+~3.30.1+ds1.orig-dxtbx.tar.xz f43847c7bdfdac155a7c3942ad60d95599b4ab3b 106529112 cctbx_2026.9+ds2+~3.30.1+ds1.orig.tar.xz 4c2885b3092a88cda1f3144a14c9c7616d1a6836 420388 cctbx_2026.9+ds2+~3.30.1+ds1-1.debian.tar.xz Checksums-Sha256: d41002a649c18fef3b687d0ecb41ce6e399c3f168f32af35b472ea5bacfc20c2 402668 cctbx_2026.9+ds2+~3.30.1+ds1.orig-dxtbx.tar.xz e0b7ce095abc06e2bf704ffcb3b781d86fd9dac548cbb86e8998ee6652c2ba1e 106529112 cctbx_2026.9+ds2+~3.30.1+ds1.orig.tar.xz 9b6316b514f4be02ecdf7c5092a50f2d455ddbc85cca0c12d510eb8540f77d97 420388 cctbx_2026.9+ds2+~3.30.1+ds1-1.debian.tar.xz Files: b9746dad2ae8427096a0752ac7cd2834 402668 cctbx_2026.9+ds2+~3.30.1+ds1.orig-dxtbx.tar.xz aadd95ba6cd32afeb4b48ba0f371a3b2 106529112 cctbx_2026.9+ds2+~3.30.1+ds1.orig.tar.xz 66ccb5a0e893cb811d05ce49e3063dbe 420388 cctbx_2026.9+ds2+~3.30.1+ds1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEtBU2D1kett1zr/uD0w3s0lmTIvwFAmrEAXwACgkQ0w3s0lmT 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/usr/share/keyrings/debian-keyring.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-tag2upload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-nonupload.pgp dpkg-source: info: skipping absent keyring /usr/share/keyrings/debian-maintainers.pgp dpkg-source: info: extracting cctbx in /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 dpkg-source: info: unpacking cctbx_2026.9+ds2+~3.30.1+ds1.orig.tar.xz dpkg-source: info: unpacking cctbx_2026.9+ds2+~3.30.1+ds1.orig-dxtbx.tar.xz dpkg-source: info: unpacking cctbx_2026.9+ds2+~3.30.1+ds1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying workaround_env_config.patch dpkg-source: info: applying boost_adaptbx.patch dpkg-source: info: applying reproducible-timestamp.patch dpkg-source: info: applying libtbx_env-per-python-version.patch dpkg-source: info: applying iotbx_with_system_libraries.patch dpkg-source: info: applying 0007-iotbx-mtz-load-ccp4-data-from-the-right-directory.patch dpkg-source: info: applying 0009-scons-soname.patch dpkg-source: info: applying 0010-fix-cbflib_adaptbx-compilation-with-the-system-cbfli.patch dpkg-source: info: applying 0011-dxtbx-use-the-system-libraries.patch dpkg-source: info: applying 0013-dxtbx-do-not-modify-the-HDF5_PLUGIN_PATH.patch dpkg-source: info: applying 0015-dxtbx-adapte-the-boost_python-link-name.patch dpkg-source: info: applying 0016-cctbx-avoid-FTBFS-when-cctbx-is-already-installed.patch dpkg-source: info: applying 0017-cctbx-do-not-hide-sign-comparison.patch dpkg-source: info: applying 0017-dxtbx-fix-for-unsigned-char-arch.patch dpkg-source: info: applying 0016-unactivated-ucif-compilation.patch dpkg-source: info: applying 0017-smtbx-save-the-generated-test-file-under-tmp.patch dpkg-source: info: applying 0018-iotbx-link-with-ccp4c-instead-of-ccp4io.patch dpkg-source: info: applying 0019-cbflib_adapter-link-cbf-private-with-cbf.patch dpkg-source: info: applying 0020-spotfinder-link-with-dxtbxspotfinder.patch dpkg-source: info: applying 0021-rstbx-link-with-ann_adaptor.patch dpkg-source: info: applying 0022-rstbx-link-rstbx_integration_ext-with-ann_adaptor.patch dpkg-source: info: applying 0023-rstbx-use-the-annself_excluded-namespace-from-ann-cc.patch dpkg-source: info: applying 0024-more-ann-ann-cctbx.patch dpkg-source: info: applying 0031-Add-missing-ctdint-header.patch dpkg-source: info: applying 0032-no-future.patch dpkg-source: info: applying 0027-Replace-unmaintained-orderedset-with-ordered_set.patch dpkg-source: info: applying 0028-Fix-pip-invocation.patch dpkg-source: info: applying 0028-dxtbx-force-pathlib-in-data-fetcher.patch dpkg-source: info: applying 0030_broken_six.patch dpkg-source: info: applying 0030-Stop-linking-against-boost_system.patch dpkg-source: info: applying hdf5-2.1.0.patch clean up apt cache ------------------ Can't exec "apt-get": No such file or directory at /usr/libexec/sbuild-usernsexec line 613. Failed to exec: apt-get: No such file or directory at /usr/libexec/sbuild-usernsexec line 614. E: cleaning the apt cache failed with 512 Check disk space ---------------- Sufficient free space for build Hack binNMU version ------------------- Created changelog entry for binNMU version 2026.9+ds2+~3.30.1+ds1-1+b2 User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LC_COLLATE=C.UTF-8 LC_CTYPE=C.UTF-8 LOGNAME=sbuild PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=/bin/sh SOURCE_DATE_EPOCH=1791228811 USER=sbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -B dpkg-buildpackage: info: source package cctbx dpkg-buildpackage: info: source version 2026.9+ds2+~3.30.1+ds1-1+b2 dpkg-buildpackage: info: source distribution sid dpkg-buildpackage: info: source changed by loong64 Build Daemon (loongson-conova-02) dpkg-source --before-build . dpkg-buildpackage: info: host architecture loong64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' cp -f debian/pyproject.toml pyproject.toml cp -r debian/annlib_adaptbx annlib_adaptbx mkdir annlib cp -r debian/ccp4io_adaptbx ccp4io_adaptbx mkdir ccp4io cp -r debian/gui_resources gui_resources dh_auto_clean -- --name cctbx pybuild --clean -i python{version} -p "3.15 3.14" --name cctbx --parallel=8 rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_auto_clean --sourcedirectory=dxtbx -- --name dxtbx pybuild --clean -i python{version} -p "3.15 3.14" --name dxtbx --dir dxtbx --parallel=8 rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; find . -name __pycache__ -type d -exec rm -rf {} \; rm -f pyproject.toml rm -rf annlib annlib_adaptbx rm -rf ccp4io ccp4io_adaptbx rm -rf gui_resources make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libcctbx0.substvars debian/libcctbx-dev.substvars debian/python3-cctbx.substvars debian/files rm -fr -- debian/libcctbx0/ debian/tmp/ debian/libcctbx-dev/ debian/python3-cctbx/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' cp -f debian/pyproject.toml pyproject.toml cp -r debian/annlib_adaptbx annlib_adaptbx mkdir annlib cp -r debian/ccp4io_adaptbx ccp4io_adaptbx mkdir ccp4io cp -r debian/gui_resources gui_resources dh_auto_configure -- --name cctbx pybuild --configure -i python{version} -p "3.15 3.14" --name cctbx --parallel=8 dh_auto_configure --sourcedirectory=dxtbx -- --name dxtbx pybuild --configure -i python{version} -p "3.15 3.14" --name dxtbx --dir dxtbx --parallel=8 dh_auto_configure -- --name cctbx -s custom --configure-args="mkdir -p {build_dir}_ && cd {build_dir}_ \ && {interpreter} /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/libtbx/configure.py --build=debug --use_environment_flags --cxxstd=c++14 annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif annlib ccp4io" pybuild --configure -i python{version} -p "3.15 3.14" --name cctbx -s custom --configure-args="mkdir -p {build_dir}_ && cd {build_dir}_ && {interpreter} /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/libtbx/configure.py --build=debug --use_environment_flags --cxxstd=c++14 annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif annlib ccp4io" --parallel=8 I: pybuild base:383: mkdir -p '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build'_ && cd '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build'_ && python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/libtbx/configure.py --build=debug --use_environment_flags --cxxstd=c++14 annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif annlib ccp4io Python: 3.15.2 "/usr/bin/python3.15" Compiler: default Build mode: debug Warning level: 0 Precompiled Headers: False Static libraries: False Static exe: False Scan Boost headers: False Write full flex_fwd.h files: False Build Boost.Python extensions: True Define BOOST_PYTHON_NO_PY_SIGNATURES: False Define BOOST_PYTHON_BOOL_INT_STRICT: True Enable OpenMP if possible: False Boost threads enabled: True Enable CUDA: False Enable KOKKOS: False Use conda: False Use opt_resources if available: False Use environment flags: True Enable C++11: False CXXFLAGS = -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 CFLAGS = -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security CPPFLAGS = -Wdate-time -D_FORTIFY_SOURCE=2 LDFLAGS = -Wl,-z,relro -lhdf5_serial command_version_suffix: None Relocatable paths anchored at: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_ Top-down list of all modules involved: xcif "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif" wxtbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/wxtbx" serialtbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/serialtbx" rstbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx" spotfinder "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder" mmtbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx" gltbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx" dxtbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx" iotbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx" smtbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx" ucif "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ucif" crys3d "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/crys3d" cctbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx" chiltbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/chiltbx" ccp4io+adaptbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ccp4io" "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ccp4io_adaptbx" cbflib_adaptbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx" annlib+adaptbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib" "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx" scitbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx" fable "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable" cma_es "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cma_es" omptbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/omptbx" boost_adaptbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx" tbxx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/tbxx" libtbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/libtbx" Creating files in build directory: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_" dispatcher_include_template.sh dispatcher_head.sh setpaths.sh setpaths.csh setpaths_all.sh setpaths_all.csh setpaths_debug.sh unsetpaths.sh setpaths_debug.csh unsetpaths.csh SConstruct Makefile run_tests.csh Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/libtbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/crys3d/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/wxtbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/libtbx/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/libtbx_refresh.py" Generating C++ header files in: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include/scitbx/array_family" Generating C++ files in: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include/scitbx/array_family/boost_python" Using fable to convert scitbx/lbfgs.f Updating entry points for scitbx 1 entries for entry point pytest_randomly.random_seeder Obtaining file:///build/reproducible-path/cctbx-2026.9%2Bds2%2B~3.30.1%2Bds1/dxtbx Checking if build backend supports build_editable: started Checking if build backend supports build_editable: finished with status 'done' Preparing editable metadata (pyproject.toml): started Preparing editable metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: dxtbx Building editable for dxtbx (pyproject.toml): started Building editable for dxtbx (pyproject.toml): finished with status 'done' Created wheel for dxtbx: filename=dxtbx-3.30.0-py3-none-any.whl size=6957 sha256=06d485e5be605a67b15f0c05cb624f192999936fe48889102e044553c4441b55 Stored in directory: /tmp/pip-ephem-wheel-cache-l272sl6p/wheels/db/9a/c8/6dd4d17dbb3ae8c20a48aaabda1ea3d19d863ab53e8d2c5558 Successfully built dxtbx Installing collected packages: dxtbx Successfully installed dxtbx-3.30.0 Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/libtbx_refresh.py" Generating C++ files in: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/cctbx/eltbx" Generating C++ files in: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include/cctbx/boost_python" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/crys3d/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/libtbx_refresh.py" Generating C++ files in: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include/smtbx/boost_python" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/libtbx_refresh.py" Using fable to convert iotbx/pdb/hybrid_36_f.f Writing: iotbx/pdb/hybrid_36_fem.cpp Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx/libtbx_refresh.py" Generating C++ files in: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/gltbx" fonts: 8x13 9x15 10x20 Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/libtbx_refresh.py" Done. I: pybuild base:383: mkdir -p '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build'_ && cd '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build'_ && python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/libtbx/configure.py --build=debug --use_environment_flags --cxxstd=c++14 annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif annlib ccp4io Python: 3.14.10 "/usr/bin/python3.14" Compiler: default Build mode: debug Warning level: 0 Precompiled Headers: False Static libraries: False Static exe: False Scan Boost headers: False Write full flex_fwd.h files: False Build Boost.Python extensions: True Define BOOST_PYTHON_NO_PY_SIGNATURES: False Define BOOST_PYTHON_BOOL_INT_STRICT: True Enable OpenMP if possible: False Boost threads enabled: True Enable CUDA: False Enable KOKKOS: False Use conda: False Use opt_resources if available: False Use environment flags: True Enable C++11: False CXXFLAGS = -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 CFLAGS = -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security CPPFLAGS = -Wdate-time -D_FORTIFY_SOURCE=2 LDFLAGS = -Wl,-z,relro -lhdf5_serial command_version_suffix: None Relocatable paths anchored at: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_ Top-down list of all modules involved: xcif "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif" wxtbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/wxtbx" serialtbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/serialtbx" rstbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx" spotfinder "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder" mmtbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx" gltbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx" dxtbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx" iotbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx" smtbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx" ucif "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ucif" crys3d "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/crys3d" cctbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx" chiltbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/chiltbx" ccp4io+adaptbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ccp4io" "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ccp4io_adaptbx" cbflib_adaptbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx" annlib+adaptbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib" "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx" scitbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx" fable "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable" cma_es "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cma_es" omptbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/omptbx" boost_adaptbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx" tbxx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/tbxx" libtbx "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/libtbx" Creating files in build directory: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_" dispatcher_include_template.sh dispatcher_head.sh setpaths.sh setpaths.csh setpaths_all.sh setpaths_all.csh setpaths_debug.sh unsetpaths.sh setpaths_debug.csh unsetpaths.csh SConstruct Makefile run_tests.csh Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/libtbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/crys3d/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/wxtbx/command_line" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/libtbx/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/libtbx_refresh.py" Generating C++ header files in: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/scitbx/array_family" Generating C++ files in: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/scitbx/array_family/boost_python" Using fable to convert scitbx/lbfgs.f Updating entry points for scitbx 1 entries for entry point pytest_randomly.random_seeder Obtaining file:///build/reproducible-path/cctbx-2026.9%2Bds2%2B~3.30.1%2Bds1/dxtbx Checking if build backend supports build_editable: started Checking if build backend supports build_editable: finished with status 'done' Preparing editable metadata (pyproject.toml): started Preparing editable metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: dxtbx Building editable for dxtbx (pyproject.toml): started Building editable for dxtbx (pyproject.toml): finished with status 'done' Created wheel for dxtbx: filename=dxtbx-3.30.0-py3-none-any.whl size=6957 sha256=06d485e5be605a67b15f0c05cb624f192999936fe48889102e044553c4441b55 Stored in directory: /tmp/pip-ephem-wheel-cache-ids28xni/wheels/8c/08/36/049ecdb41757e68591ceb56d9b10cb84f6b6541b57aa8342af Successfully built dxtbx Installing collected packages: dxtbx Successfully installed dxtbx-3.30.0 Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/libtbx_refresh.py" Generating C++ files in: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/cctbx/eltbx" Generating C++ files in: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/cctbx/boost_python" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/crys3d/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/libtbx_refresh.py" Generating C++ files in: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/smtbx/boost_python" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/libtbx_refresh.py" Using fable to convert iotbx/pdb/hybrid_36_f.f Writing: iotbx/pdb/hybrid_36_fem.cpp Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx/libtbx_refresh.py" Generating C++ files in: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/gltbx" fonts: 8x13 9x15 10x20 Processing: "/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/libtbx_refresh.py" Done. make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' rm -f debian/libcctbx-dev.debhelper.log debian/libcctbx0.debhelper.log debian/python3-cctbx.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' # Python modules dh_auto_build -- --name cctbx pybuild --build -i python{version} -p "3.15 3.14" --name cctbx --parallel=8 I: pybuild plugin_pyproject:142: Building wheel for python3.15 with "build" module I: pybuild base:383: python3.15 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx * Building wheel... running bdist_wheel running build running build_py creating build/lib/cctbx_website copying cctbx_website/libtbx_refresh.py -> build/lib/cctbx_website copying cctbx_website/__init__.py -> build/lib/cctbx_website copying cctbx_website/run_tests.py -> build/lib/cctbx_website creating build/lib/boost_adaptbx copying boost_adaptbx/libtbx_refresh.py -> build/lib/boost_adaptbx copying boost_adaptbx/hybrid_times.py -> build/lib/boost_adaptbx copying boost_adaptbx/__init__.py -> build/lib/boost_adaptbx copying boost_adaptbx/run_tests.py -> build/lib/boost_adaptbx creating build/lib/mmtbx copying mmtbx/lattice.py -> build/lib/mmtbx copying mmtbx/proq2.py -> build/lib/mmtbx copying mmtbx/superpose.py -> build/lib/mmtbx copying mmtbx/map_tools.py -> build/lib/mmtbx copying mmtbx/process_predicted_model.py -> build/lib/mmtbx copying mmtbx/restraints.py -> build/lib/mmtbx copying mmtbx/arrays.py -> build/lib/mmtbx copying mmtbx/f_model_info.py -> build/lib/mmtbx copying mmtbx/xmanip.py -> build/lib/mmtbx copying mmtbx/real_space_correlation.py -> build/lib/mmtbx copying mmtbx/pdb_distances.py -> build/lib/mmtbx copying mmtbx/pdbtools.py -> build/lib/mmtbx copying mmtbx/find_peaks.py -> build/lib/mmtbx copying mmtbx/model_vs_data.py -> build/lib/mmtbx copying mmtbx/xmanip_tasks.py -> build/lib/mmtbx copying mmtbx/msa.py -> build/lib/mmtbx copying mmtbx/resolve_resources.py -> build/lib/mmtbx copying mmtbx/invariant_domain.py -> build/lib/mmtbx copying mmtbx/libtbx_refresh.py -> build/lib/mmtbx copying mmtbx/grow_density.py -> build/lib/mmtbx copying mmtbx/pdb_symmetry.py -> build/lib/mmtbx copying mmtbx/domains_from_pae.py -> build/lib/mmtbx copying mmtbx/__init__.py -> build/lib/mmtbx copying mmtbx/clashes.py -> build/lib/mmtbx copying mmtbx/run_tests.py -> build/lib/mmtbx creating build/lib/xcif copying xcif/__init__.py -> build/lib/xcif copying xcif/run_tests.py -> build/lib/xcif creating build/lib/cootbx copying cootbx/ligand_checklist.py -> build/lib/cootbx copying cootbx/xmlrpc_server.py -> build/lib/cootbx copying cootbx/hydrogens_button.py -> build/lib/cootbx copying cootbx/view_refinement.py -> build/lib/cootbx copying cootbx/simple_zoom_list.py -> build/lib/cootbx copying cootbx/validation_lists.py -> build/lib/cootbx copying cootbx/interactive_edit.py -> build/lib/cootbx copying cootbx/watch_file.py -> build/lib/cootbx copying cootbx/__init__.py -> build/lib/cootbx creating build/lib/fable copying fable/intrinsics.py -> build/lib/fable copying fable/simple_compilation.py -> build/lib/fable copying fable/tst_ext.py -> build/lib/fable copying fable/tokenization.py -> build/lib/fable copying fable/tst_read.py -> build/lib/fable copying fable/__init__.py -> build/lib/fable copying fable/equivalence.py -> build/lib/fable copying fable/read.py -> build/lib/fable copying fable/utils.py -> build/lib/fable copying fable/tst_cout_compile.py -> build/lib/fable copying fable/tst_equivalence.py -> build/lib/fable copying fable/run_tests.py -> build/lib/fable copying fable/tst_cout.py -> build/lib/fable copying fable/cout.py -> build/lib/fable creating build/lib/smtbx copying smtbx/development.py -> build/lib/smtbx copying smtbx/libtbx_refresh.py -> build/lib/smtbx copying smtbx/__init__.py -> build/lib/smtbx copying smtbx/utils.py -> build/lib/smtbx copying smtbx/run_tests.py -> build/lib/smtbx creating build/lib/fast_linalg copying fast_linalg/__init__.py -> build/lib/fast_linalg creating build/lib/ccp4io_adaptbx copying ccp4io_adaptbx/tst.py -> build/lib/ccp4io_adaptbx copying ccp4io_adaptbx/copy_files.py -> build/lib/ccp4io_adaptbx copying ccp4io_adaptbx/__init__.py -> build/lib/ccp4io_adaptbx creating build/lib/wxtbx copying wxtbx/segmentedctrl.py -> build/lib/wxtbx copying wxtbx/mtz_dump.py -> build/lib/wxtbx copying wxtbx/bitmaps.py -> build/lib/wxtbx copying wxtbx/layout.py -> build/lib/wxtbx copying wxtbx/info_panels.py -> build/lib/wxtbx copying wxtbx/listeditor.py -> build/lib/wxtbx copying wxtbx/checklistctrl.py -> build/lib/wxtbx copying wxtbx/windows.py -> build/lib/wxtbx copying wxtbx/icons.py -> build/lib/wxtbx copying wxtbx/pdb_editor.py -> build/lib/wxtbx copying wxtbx/anomalous_scattering.py -> build/lib/wxtbx copying wxtbx/misc_dialogs.py -> build/lib/wxtbx copying wxtbx/metallicbutton.py -> build/lib/wxtbx copying wxtbx/xtriage.py -> build/lib/wxtbx copying wxtbx/browser.py -> build/lib/wxtbx copying wxtbx/polygon.py -> build/lib/wxtbx copying wxtbx/b_plot.py -> build/lib/wxtbx copying wxtbx/sequence_view.py -> build/lib/wxtbx copying wxtbx/tables.py -> build/lib/wxtbx copying wxtbx/monitor.py -> build/lib/wxtbx copying wxtbx/path_dialogs.py -> build/lib/wxtbx copying wxtbx/app.py -> build/lib/wxtbx copying wxtbx/symmetry_dialog.py -> build/lib/wxtbx copying wxtbx/adp_statistics.py -> build/lib/wxtbx copying wxtbx/process_control.py -> build/lib/wxtbx copying wxtbx/__init__.py -> build/lib/wxtbx copying wxtbx/errors.py -> build/lib/wxtbx copying wxtbx/heavy_atoms.py -> build/lib/wxtbx copying wxtbx/custom_restraints.py -> build/lib/wxtbx copying wxtbx/qstat_view.py -> build/lib/wxtbx copying wxtbx/ensemble_validation.py -> build/lib/wxtbx copying wxtbx/polygon_db_viewer.py -> build/lib/wxtbx copying wxtbx/utils.py -> build/lib/wxtbx copying wxtbx/run_tests.py -> build/lib/wxtbx creating build/lib/cctbx copying cctbx/r_free_utils.py -> build/lib/cctbx copying cctbx/translation_search.py -> build/lib/cctbx copying cctbx/euclidean_model_matching.py -> build/lib/cctbx copying cctbx/adptbx.py -> build/lib/cctbx copying cctbx/dmtbx.py -> build/lib/cctbx copying cctbx/run_examples.py -> build/lib/cctbx copying cctbx/math_module.py -> build/lib/cctbx copying cctbx/libtbx_refresh.py -> build/lib/cctbx copying cctbx/french_wilson.py -> build/lib/cctbx copying cctbx/__init__.py -> build/lib/cctbx copying cctbx/anharmonic.py -> build/lib/cctbx copying cctbx/statistics.py -> build/lib/cctbx copying cctbx/symmetry_search.py -> build/lib/cctbx copying cctbx/multipolar.py -> build/lib/cctbx copying cctbx/run_tests.py -> build/lib/cctbx copying cctbx/crystal_orientation.py -> build/lib/cctbx creating build/lib/iotbx copying iotbx/map_model_manager.py -> build/lib/iotbx copying iotbx/crystal_symmetry_from_any.py -> build/lib/iotbx copying iotbx/ranges.py -> build/lib/iotbx copying iotbx/merging_statistics.py -> build/lib/iotbx copying iotbx/phases.py -> build/lib/iotbx copying iotbx/csv_utils.py -> build/lib/iotbx copying iotbx/option_parser.py -> build/lib/iotbx copying iotbx/table_one.py -> build/lib/iotbx copying iotbx/symmetry.py -> build/lib/iotbx copying iotbx/map_manager.py -> build/lib/iotbx copying iotbx/map_tools.py -> build/lib/iotbx copying iotbx/simple_parser.py -> build/lib/iotbx copying iotbx/reflection_file_reader.py -> build/lib/iotbx copying iotbx/mtrix_biomt.py -> build/lib/iotbx copying iotbx/reflection_file_utils.py -> build/lib/iotbx copying iotbx/extract_xtal_data.py -> build/lib/iotbx copying iotbx/wildcard.py -> build/lib/iotbx copying iotbx/pymol.py -> build/lib/iotbx copying iotbx/builders.py -> build/lib/iotbx copying iotbx/logfiles.py -> build/lib/iotbx copying iotbx/format.py -> build/lib/iotbx copying iotbx/cif_mtz_data_labels.py -> build/lib/iotbx copying iotbx/cli_parser.py -> build/lib/iotbx copying iotbx/reflection_file_editor.py -> build/lib/iotbx copying iotbx/libtbx_refresh.py -> build/lib/iotbx copying iotbx/file_reader.py -> build/lib/iotbx copying iotbx/builders_depending_on_smtbx.py -> build/lib/iotbx copying iotbx/phil.py -> build/lib/iotbx copying iotbx/__init__.py -> build/lib/iotbx copying iotbx/data_plots.py -> build/lib/iotbx copying iotbx/poscar.py -> build/lib/iotbx copying iotbx/reflection_file_converter.py -> build/lib/iotbx copying iotbx/run_tests.py -> build/lib/iotbx creating build/lib/annlib_adaptbx copying annlib_adaptbx/__init__.py -> build/lib/annlib_adaptbx copying annlib_adaptbx/run_tests.py -> build/lib/annlib_adaptbx creating build/lib/spotfinder copying spotfinder/exception.py -> build/lib/spotfinder copying spotfinder/__init__.py -> build/lib/spotfinder copying spotfinder/run_tests.py -> build/lib/spotfinder creating build/lib/rstbx copying rstbx/__init__.py -> build/lib/rstbx copying rstbx/utils.py -> build/lib/rstbx copying rstbx/run_tests.py -> build/lib/rstbx creating build/lib/cma_es copying cma_es/cma_es_interface.py -> build/lib/cma_es copying cma_es/tst_cma_es.py -> build/lib/cma_es copying cma_es/__init__.py -> build/lib/cma_es copying cma_es/run_tests.py -> build/lib/cma_es creating build/lib/cbflib_adaptbx copying cbflib_adaptbx/copy_files.py -> build/lib/cbflib_adaptbx copying cbflib_adaptbx/exercise_compression.py -> build/lib/cbflib_adaptbx copying cbflib_adaptbx/__init__.py -> build/lib/cbflib_adaptbx copying cbflib_adaptbx/run_tests.py -> build/lib/cbflib_adaptbx creating build/lib/libtbx copying libtbx/containers.py -> build/lib/libtbx copying libtbx/pyplot.py -> build/lib/libtbx copying libtbx/tst_run_tests_parallel_unique_dirs.py -> build/lib/libtbx copying libtbx/tst_word_index_generator.py -> build/lib/libtbx copying libtbx/assert_utils.py -> build/lib/libtbx copying libtbx/tst_fully_buffered_timeout.py -> build/lib/libtbx copying libtbx/cpp_function_name.py -> build/lib/libtbx copying libtbx/program_template.py -> build/lib/libtbx copying libtbx/tst_python_code_parsing.py -> build/lib/libtbx copying libtbx/tst_easy_mp_multicore.py -> build/lib/libtbx copying libtbx/clear_paths.py -> build/lib/libtbx copying libtbx/console_utils.py -> build/lib/libtbx copying libtbx/start_print_trace.py -> build/lib/libtbx copying libtbx/tst_representation.py -> build/lib/libtbx copying libtbx/tst_citations.py -> build/lib/libtbx copying libtbx/complex_math.py -> build/lib/libtbx copying libtbx/tst_t96_roster.py -> build/lib/libtbx copying libtbx/runtime_utils.py -> build/lib/libtbx copying libtbx/tst_topological_sort.py -> build/lib/libtbx copying libtbx/word_index_generator.py -> build/lib/libtbx copying libtbx/dlite.py -> build/lib/libtbx copying libtbx/option_parser.py -> build/lib/libtbx copying libtbx/thread_utils.py -> build/lib/libtbx copying libtbx/cli.py -> build/lib/libtbx copying libtbx/easy_run.py -> build/lib/libtbx copying libtbx/tst_runtime_utils.py -> build/lib/libtbx copying libtbx/subprocess_with_fixes.py -> build/lib/libtbx copying libtbx/tst_guided_coding.py -> build/lib/libtbx copying libtbx/object_oriented_patterns.py -> build/lib/libtbx copying libtbx/easy_mp.py -> build/lib/libtbx copying libtbx/tst_containers.py -> build/lib/libtbx copying libtbx/introspection.py -> build/lib/libtbx copying libtbx/xmlrpc_server_example.py -> build/lib/libtbx copying libtbx/topological_sort.py -> build/lib/libtbx copying libtbx/tst_math_utils.py -> build/lib/libtbx copying libtbx/env_config.py -> build/lib/libtbx copying libtbx/math_utils.py -> build/lib/libtbx copying libtbx/pkg_utils.py -> build/lib/libtbx copying libtbx/forward_compatibility.py -> build/lib/libtbx copying libtbx/crossmingw.py -> build/lib/libtbx copying libtbx/find_reference_cycles.py -> build/lib/libtbx copying libtbx/tst_xmlrpc_utils.py -> build/lib/libtbx copying libtbx/configure.py -> build/lib/libtbx copying libtbx/file_clutter.py -> build/lib/libtbx copying libtbx/clusterTests.py -> build/lib/libtbx copying libtbx/tst_thread_utils.py -> build/lib/libtbx copying libtbx/python_code_parsing.py -> build/lib/libtbx copying libtbx/smart_open.py -> build/lib/libtbx copying libtbx/easy_pickle.py -> build/lib/libtbx copying libtbx/tst_version.py -> build/lib/libtbx copying libtbx/callbacks.py -> build/lib/libtbx copying libtbx/version.py -> build/lib/libtbx copying libtbx/citations.py -> build/lib/libtbx copying libtbx/tst_mahalanobis.py -> build/lib/libtbx copying libtbx/libtbx_refresh.py -> build/lib/libtbx copying libtbx/easy_profile.py -> build/lib/libtbx copying libtbx/pyframe.py -> build/lib/libtbx copying libtbx/tst_easy_mp_state.py -> build/lib/libtbx copying libtbx/tst_object_oriented_patterns.py -> build/lib/libtbx copying libtbx/load_env.py -> build/lib/libtbx copying libtbx/log.py -> build/lib/libtbx copying libtbx/tst_scheduling.py -> build/lib/libtbx copying libtbx/tst_easy_pickle.py -> build/lib/libtbx copying libtbx/__init__.py -> build/lib/libtbx copying libtbx/tst_easy_mp.py -> build/lib/libtbx copying libtbx/str_utils.py -> build/lib/libtbx copying libtbx/code_analysis.py -> build/lib/libtbx copying libtbx/tst_conda_dispatcher.py -> build/lib/libtbx copying libtbx/tst_binary_search.py -> build/lib/libtbx copying libtbx/metric_prefixes.py -> build/lib/libtbx copying libtbx/wingide.py -> build/lib/libtbx copying libtbx/tst_program_template.py -> build/lib/libtbx copying libtbx/tst_utils.py -> build/lib/libtbx copying libtbx/tst_path.py -> build/lib/libtbx copying libtbx/binary_search.py -> build/lib/libtbx copying libtbx/tst_find_unused_imports.py -> build/lib/libtbx copying libtbx/xmlrpc_utils.py -> build/lib/libtbx copying libtbx/path.py -> build/lib/libtbx copying libtbx/mpi4py.py -> build/lib/libtbx copying libtbx/simplexml.py -> build/lib/libtbx copying libtbx/utils.py -> build/lib/libtbx copying libtbx/tst_run_tests_parallel_retry.py -> build/lib/libtbx copying libtbx/progress.py -> build/lib/libtbx copying libtbx/tst_citation_encoding.py -> build/lib/libtbx copying libtbx/objgraph.py -> build/lib/libtbx copying libtbx/table_utils.py -> build/lib/libtbx copying libtbx/resource_monitor.py -> build/lib/libtbx copying libtbx/tst_str_utils.py -> build/lib/libtbx copying libtbx/tst_dlite.py -> build/lib/libtbx copying libtbx/run_tests.py -> build/lib/libtbx copying libtbx/cluster.py -> build/lib/libtbx copying libtbx/tst_add_docstrings_with_ai.py -> build/lib/libtbx copying libtbx/try_hello_world_c.py -> build/lib/libtbx creating build/lib/simtbx copying simtbx/__init__.py -> build/lib/simtbx copying simtbx/run_tests.py -> build/lib/simtbx creating build/lib/omptbx copying omptbx/tst.py -> build/lib/omptbx copying omptbx/__init__.py -> build/lib/omptbx creating build/lib/gltbx copying gltbx/gl_managed.py -> build/lib/gltbx copying gltbx/generate_functions_bpl.py -> build/lib/gltbx copying gltbx/images.py -> build/lib/gltbx copying gltbx/wx_cube.py -> build/lib/gltbx copying gltbx/wx_motion_on_tab.py -> build/lib/gltbx copying gltbx/wx_viewers_images.py -> build/lib/gltbx copying gltbx/wx_scene.py -> build/lib/gltbx copying gltbx/viewer_utils.py -> build/lib/gltbx copying gltbx/tst.py -> build/lib/gltbx copying gltbx/util.py -> build/lib/gltbx copying gltbx/wx_viewer_leapmotion.py -> build/lib/gltbx copying gltbx/quadrics.py -> build/lib/gltbx copying gltbx/wx_viewer_example.py -> build/lib/gltbx copying gltbx/tst_ellipsoids.py -> build/lib/gltbx copying gltbx/generate_fonts_ucs_cpp.py -> build/lib/gltbx copying gltbx/extract_opengl_specs.py -> build/lib/gltbx copying gltbx/gl.py -> build/lib/gltbx copying gltbx/libtbx_refresh.py -> build/lib/gltbx copying gltbx/wx_viewer.py -> build/lib/gltbx copying gltbx/tst_fonts.py -> build/lib/gltbx copying gltbx/fonts.py -> build/lib/gltbx copying gltbx/__init__.py -> build/lib/gltbx copying gltbx/glu.py -> build/lib/gltbx copying gltbx/generate_defines_bpl.py -> build/lib/gltbx copying gltbx/tst_viewer_utils.py -> build/lib/gltbx copying gltbx/wx_ellipsoids_test.py -> build/lib/gltbx copying gltbx/run_tests.py -> build/lib/gltbx creating build/lib/serialtbx copying serialtbx/__init__.py -> build/lib/serialtbx creating build/lib/scitbx copying scitbx/cubicle_neighbors.py -> build/lib/scitbx copying scitbx/r3_utils.py -> build/lib/scitbx copying scitbx/smoothing.py -> build/lib/scitbx copying scitbx/regular_grid_on_unit_sphere.py -> build/lib/scitbx copying scitbx/differential_evolution.py -> build/lib/scitbx copying scitbx/restraints.py -> build/lib/scitbx copying scitbx/minimizers.py -> build/lib/scitbx copying scitbx/cross_entropy.py -> build/lib/scitbx copying scitbx/simplex.py -> build/lib/scitbx copying scitbx/direct_search_simulated_annealing.py -> build/lib/scitbx copying scitbx/lbfgsb.py -> build/lib/scitbx copying scitbx/libtbx_refresh.py -> build/lib/scitbx copying scitbx/genetic_algorithm_with_mp.py -> build/lib/scitbx copying scitbx/fftpack.py -> build/lib/scitbx copying scitbx/minpack.py -> build/lib/scitbx copying scitbx/__init__.py -> build/lib/scitbx copying scitbx/golden_section_search.py -> build/lib/scitbx copying scitbx/run_tests.py -> build/lib/scitbx creating build/lib/qttbx copying qttbx/qt.py -> build/lib/qttbx copying qttbx/phil.py -> build/lib/qttbx copying qttbx/__init__.py -> build/lib/qttbx copying qttbx/run_tests.py -> build/lib/qttbx creating build/lib/fftw3tbx copying fftw3tbx/tst_ext.py -> build/lib/fftw3tbx copying fftw3tbx/libtbx_refresh.py -> build/lib/fftw3tbx copying fftw3tbx/__init__.py -> build/lib/fftw3tbx creating build/lib/cctbx_website/command_line copying cctbx_website/command_line/tst_comment_to_docstring.py -> build/lib/cctbx_website/command_line copying cctbx_website/command_line/comment_to_docstring.py -> build/lib/cctbx_website/command_line copying cctbx_website/command_line/extract_script_from_html_cctbx_doc.py -> build/lib/cctbx_website/command_line copying cctbx_website/command_line/edit_html.py -> build/lib/cctbx_website/command_line copying cctbx_website/command_line/run_pdoc_cctbx_api.py -> build/lib/cctbx_website/command_line copying cctbx_website/command_line/__init__.py -> build/lib/cctbx_website/command_line copying cctbx_website/command_line/edit_for_boost.py -> build/lib/cctbx_website/command_line creating build/lib/cctbx_website/regression copying cctbx_website/regression/tst_9_doc_maps_boxing.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_5_doc_hlo_map_manager.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_12_script_compare_ss.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_7_doc_low_flex_advanced.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_15_doc_models_hierarchy.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_2_doc_hlo_intro.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_11_script_1.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_4_doc_hlo_data_manager.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_10_doc_programming_tips_1.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_3_doc_hlo_model_manager.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_8_doc_maps_intro.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_13_script_ideal_ss.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_1_template.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_18_doc_programming_tips_2.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/__init__.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_py_from_html.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/exercise.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_17_script_rfactors.py -> build/lib/cctbx_website/regression copying cctbx_website/regression/tst_19_doc_programming_tips_3.py -> build/lib/cctbx_website/regression creating build/lib/boost_adaptbx/boost copying boost_adaptbx/boost/rational.py -> build/lib/boost_adaptbx/boost copying boost_adaptbx/boost/python.py -> build/lib/boost_adaptbx/boost copying boost_adaptbx/boost/optional.py -> build/lib/boost_adaptbx/boost copying boost_adaptbx/boost/tuple.py -> build/lib/boost_adaptbx/boost copying boost_adaptbx/boost/__init__.py -> build/lib/boost_adaptbx/boost copying boost_adaptbx/boost/std_pair.py -> build/lib/boost_adaptbx/boost creating build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/double_overflow.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/show_platform_info.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/segmentation_fault.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/gcd.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/divide_by_zero.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/inexact.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/__init__.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/int_overflow.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/lcm.py -> build/lib/boost_adaptbx/command_line copying boost_adaptbx/command_line/show_environ_usage.py -> build/lib/boost_adaptbx/command_line creating build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/minimum_cut_enumerate.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/maximum_clique.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/clustering_algorithm.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/utility.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/breadth_first_search.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/__init__.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/graph_structure_comparison.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/min_cut_max_flow.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/connected_component_algorithm.py -> build/lib/boost_adaptbx/graph copying boost_adaptbx/graph/metric.py -> build/lib/boost_adaptbx/graph creating build/lib/mmtbx/suitename copying mmtbx/suitename/suiteninit.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/suitename.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/transdent.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/diangle.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/suiteninput.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/suitealyze.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/suitenout.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/dualparse.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/__init__.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/mainchain.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/suites.py -> build/lib/mmtbx/suitename copying mmtbx/suitename/suitenamedefs.py -> build/lib/mmtbx/suitename creating build/lib/mmtbx/kinemage copying mmtbx/kinemage/ribbon_rendering.py -> build/lib/mmtbx/kinemage copying mmtbx/kinemage/ribbons.py -> build/lib/mmtbx/kinemage copying mmtbx/kinemage/__init__.py -> build/lib/mmtbx/kinemage copying mmtbx/kinemage/nrubs.py -> build/lib/mmtbx/kinemage copying mmtbx/kinemage/validation.py -> build/lib/mmtbx/kinemage copying mmtbx/kinemage/tst_validation.py -> build/lib/mmtbx/kinemage creating build/lib/mmtbx/maps copying mmtbx/maps/tst_correlation.py -> build/lib/mmtbx/maps copying mmtbx/maps/tst_composite_omit_map_2.py -> build/lib/mmtbx/maps copying mmtbx/maps/fem.py -> build/lib/mmtbx/maps copying mmtbx/maps/composite_omit_map.py -> build/lib/mmtbx/maps copying mmtbx/maps/superpose.py -> build/lib/mmtbx/maps copying mmtbx/maps/mtriage.py -> build/lib/mmtbx/maps copying mmtbx/maps/polder.py -> build/lib/mmtbx/maps copying mmtbx/maps/correlation.py -> build/lib/mmtbx/maps copying mmtbx/maps/kick.py -> build/lib/mmtbx/maps copying mmtbx/maps/__init__.py -> build/lib/mmtbx/maps copying mmtbx/maps/tst_composite_omit_map.py -> build/lib/mmtbx/maps copying mmtbx/maps/xtrapol8.py -> build/lib/mmtbx/maps copying mmtbx/maps/utils.py -> build/lib/mmtbx/maps copying mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py -> build/lib/mmtbx/maps copying mmtbx/maps/fobs_minus_fobs_map.py -> build/lib/mmtbx/maps copying mmtbx/maps/tst_composite_omit_map_3.py -> build/lib/mmtbx/maps copying mmtbx/maps/map_model_cc.py -> build/lib/mmtbx/maps creating build/lib/mmtbx/refinement copying mmtbx/refinement/targets.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tardy.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_select_best_starting_model.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_fit_rotamers.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/minimization_ncs_constraints.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_group.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/occupancies.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/print_statistics.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/select_best_starting_model.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/geometry_minimization.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/minimization.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/data.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/flip_peptide_side_chain.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_rigid_body.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/restraints.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/anomalous_scatterer_groups.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/group.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_refinement_flags.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/inspect_tardy_trajectory.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_occupancy_selections.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/calculators.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_anomalous_scatterer_groups.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/refinement_flags.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/weights_params.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/rigid_body.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_misc.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/__init__.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/orca.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/wrappers.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/minimization_monitor.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/adp_refinement.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/utils.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/weights.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/energy_monitor.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_real_space_simple.py -> build/lib/mmtbx/refinement copying mmtbx/refinement/tst_group_2.py -> build/lib/mmtbx/refinement creating build/lib/mmtbx/wwpdb copying mmtbx/wwpdb/rcsb_web_services.py -> build/lib/mmtbx/wwpdb copying mmtbx/wwpdb/tst_rcsb_entry_request.py -> build/lib/mmtbx/wwpdb copying mmtbx/wwpdb/__init__.py -> build/lib/mmtbx/wwpdb copying mmtbx/wwpdb/rcsb_entry_request.py -> build/lib/mmtbx/wwpdb copying mmtbx/wwpdb/tst_rcsb_web_services.py -> build/lib/mmtbx/wwpdb creating build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_4.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_5.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_2.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_1.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/riding.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_11.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_4.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_7.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_16.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_8.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_2.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_15.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_1.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_3.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_14.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_validate_H.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_minimize.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_const_dihedral.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_6.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/neutron_utils.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_time.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_2.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/reduce_hydrogen.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_5.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_3.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_connectivity.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_manager.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_9.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_13.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_12.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/validate_H.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_8.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/parameterization.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/specialised_hydrogen_atoms.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_3.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_5.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_4.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_fd_1.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_riding_coefficients.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_7.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/__init__.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_10.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen_6.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_add_hydrogen.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/connectivity.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/build_hydrogens.py -> build/lib/mmtbx/hydrogens copying mmtbx/hydrogens/tst_parameterization_9.py -> build/lib/mmtbx/hydrogens creating build/lib/mmtbx/alignment copying mmtbx/alignment/__init__.py -> build/lib/mmtbx/alignment creating build/lib/mmtbx/chemical_components copying mmtbx/chemical_components/tst.py -> build/lib/mmtbx/chemical_components copying mmtbx/chemical_components/cif_parser.py -> build/lib/mmtbx/chemical_components copying mmtbx/chemical_components/__init__.py -> build/lib/mmtbx/chemical_components creating build/lib/mmtbx/masks copying mmtbx/masks/tst_masks.py -> build/lib/mmtbx/masks copying mmtbx/masks/tst_asu_mask.py -> build/lib/mmtbx/masks copying mmtbx/masks/__init__.py -> build/lib/mmtbx/masks creating build/lib/mmtbx/den copying mmtbx/den/plot_weights.py -> build/lib/mmtbx/den copying mmtbx/den/__init__.py -> build/lib/mmtbx/den copying mmtbx/den/refinement.py -> build/lib/mmtbx/den creating build/lib/mmtbx/command_line copying mmtbx/command_line/sort_hetatms.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/model_map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/undowser2.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/suitename.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/show_r_factors_by_shell.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/model_vs_sequence.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/fetch_pdb.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/ramalyze.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rebuild_rotarama_cache.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/molprobity.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/barbed_wire_analysis.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/development_fem.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rna_validate_suites.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/plan_sad_experiment.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/chiral_validation.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/find_tls_groups.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/mon_lib_cif_triage.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/pdb_interpretation.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rebuild_cablam_cache.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/models_as_chains.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/tls_as_xyz.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/fmodel.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rna_validate_puckers.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/altloc_remediate.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/cif_as_mtz.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/mp_geo.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/atom_valence_simple.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/cablam.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/table_one.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/ligand_restraints_validation.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rna_validate.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/superpose.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/density_modification.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/map_to_structure_factors.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/holton_geometry_validation.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/maps.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/select_best_starting_model.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/geometry_minimization.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/next_gen_residue_typing.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/debug_riding.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/nonbonded_overlaps.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/process_predicted_model.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/ringer.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/emringer.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/probescore_ligand.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/xtriage.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/r_factor_statistics.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/comparama.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/water_b_factors.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/ribbons.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rigid_bond_test.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/reduce_cryoem_resolution.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/kinemage.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/hbond.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/map_comparison.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/validation_summary.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/clashscore2.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/map_box.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/xmanip.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/matthews.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/real_space_correlation.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/helix_sheet_recs_as_pdb_files.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/remove_outliers.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/polder.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/pdbtools.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/fab_elbow_angle.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/quantum_interface.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/tls.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/model_vs_data.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/cbetadev.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/hydrogenate.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/taam_minus_iam.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/next_gen_atom_typing.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/arginine_geometry.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/clashscore.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/reciprocal_space_arrays.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/electrons.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/apply_ncs_to_ligand.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rna_validate_bonds.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/reduce2.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rotalyze.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/grow_density.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/f000.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/dynamics.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rank_scale_map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/ss_idealization.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/cc_star.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/estimate_bijvoet_ratio.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/real_space_diff_map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/distance_difference.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/prepare_pdb_deposition.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/angle.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/validate_ligands.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/probe2.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/model_vs_map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/sisa.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/where_is_that_cif_file.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/super.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/mask.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/undowser.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/mp_validate_bonds.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/omegalyze.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/__init__.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/emringer_score.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/cablam_idealization.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/search_pdb_symmetry.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/map_to_model_histogram.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/model_idealization.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/perigee.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/model_model_distances.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/maximum_entropy_map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/xtrapol8.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/tls_analysis.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/find_residue_in_pdb.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/refine_anomalous_substructure.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/rama_z.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/verify_mon_lib_data.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/find_peaks_holes.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/secondary_structure_restraints.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/prune_model.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/pdb_atom_selection.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/secondary_structure_validation.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/mtz2map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/suitename_old.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/fake_f_obs.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/fobs_minus_fobs_map.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/validate_H_cl_app.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/development_aev.py -> build/lib/mmtbx/command_line copying mmtbx/command_line/massage_data.py -> build/lib/mmtbx/command_line creating build/lib/mmtbx/validation copying mmtbx/validation/undowser2.py -> build/lib/mmtbx/validation copying mmtbx/validation/fav_lists.py -> build/lib/mmtbx/validation copying mmtbx/validation/waters.py -> build/lib/mmtbx/validation copying mmtbx/validation/ramalyze.py -> build/lib/mmtbx/validation copying mmtbx/validation/barbed_wire_analysis.py -> build/lib/mmtbx/validation copying mmtbx/validation/sequence.py -> build/lib/mmtbx/validation copying mmtbx/validation/ligand_interactions.py -> build/lib/mmtbx/validation copying mmtbx/validation/ligands.py -> build/lib/mmtbx/validation copying mmtbx/validation/cablam.py -> build/lib/mmtbx/validation copying mmtbx/validation/rna_validate.py -> build/lib/mmtbx/validation copying mmtbx/validation/holton_geometry_validation.py -> build/lib/mmtbx/validation copying mmtbx/validation/cbd_utils.py -> build/lib/mmtbx/validation copying mmtbx/validation/graphics.py -> build/lib/mmtbx/validation copying mmtbx/validation/comparama.py -> build/lib/mmtbx/validation copying mmtbx/validation/restraints.py -> build/lib/mmtbx/validation copying mmtbx/validation/experimental.py -> build/lib/mmtbx/validation copying mmtbx/validation/clashscore2.py -> build/lib/mmtbx/validation copying mmtbx/validation/convert_lists.py -> build/lib/mmtbx/validation copying mmtbx/validation/ensembles.py -> build/lib/mmtbx/validation copying mmtbx/validation/cbetadev.py -> build/lib/mmtbx/validation copying mmtbx/validation/clashscore.py -> build/lib/mmtbx/validation copying mmtbx/validation/rotalyze.py -> build/lib/mmtbx/validation copying mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py -> build/lib/mmtbx/validation copying mmtbx/validation/phi_psi_2_data.py -> build/lib/mmtbx/validation copying mmtbx/validation/validate_ligands.py -> build/lib/mmtbx/validation copying mmtbx/validation/undowser.py -> build/lib/mmtbx/validation copying mmtbx/validation/model_properties.py -> build/lib/mmtbx/validation copying mmtbx/validation/mp_validate_bonds.py -> build/lib/mmtbx/validation copying mmtbx/validation/omegalyze.py -> build/lib/mmtbx/validation copying mmtbx/validation/__init__.py -> build/lib/mmtbx/validation copying mmtbx/validation/comprehensive_residue.py -> build/lib/mmtbx/validation copying mmtbx/validation/rama_z.py -> build/lib/mmtbx/validation copying mmtbx/validation/mean_devs_PRO_phi_psi.py -> build/lib/mmtbx/validation copying mmtbx/validation/analyze_peptides.py -> build/lib/mmtbx/validation copying mmtbx/validation/utils.py -> build/lib/mmtbx/validation copying mmtbx/validation/mean_devs_others_phi_psi.py -> build/lib/mmtbx/validation copying mmtbx/validation/chain_comparison.py -> build/lib/mmtbx/validation copying mmtbx/validation/datasets.py -> build/lib/mmtbx/validation creating build/lib/mmtbx/geometry copying mmtbx/geometry/shared_types.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/topology.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/clash.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/altloc.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/sphere_surface_sampling.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/indexing.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/__init__.py -> build/lib/mmtbx/geometry copying mmtbx/geometry/asa.py -> build/lib/mmtbx/geometry creating build/lib/mmtbx/regression copying mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_metal_link_1.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_loop_closure.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_apply_cif_restraints.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_maps_misc.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_map_model_cc.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_validate_ligands_2.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_holton_geometry_validation.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_model_map.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_find_ss_structure_cif.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_map_type_parser.py -> build/lib/mmtbx/regression copying mmtbx/regression/make_fake_anomalous_data.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_mtz2map.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_find_ss_structure.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_geo_min_restraints_phil.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_command_line_input.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_reduce_timeout.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_reduce_cryoem_resolution.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_statistics_output.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_find_ncs.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_ligand_ncs.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_ringer.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_validate_ligands_4.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_sequence_validation.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_model_vs_map.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_process_predicted_model_cif.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_scattering_table.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_origin_ids.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_rdkit_utils_molecule.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_adp_restraints.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_ml_estimate.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_minimize_chain.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_add_arrows_on_plot.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_cif_as_mtz_wavelengths.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_multi_residue_class.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_flipping_his.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_regularize_from_pdb_cif.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_scattering_type_registry.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_validate_ligands_3.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_superpose.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_real_space_correlation.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_altloc_remediate.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_table_one.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_sort_hetatms.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_chain_comparison.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_clashes.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_msa.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_anomalous_substructure.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_dynamics_cli.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_fmodel_no_cryst1.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_ligand_interactions.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_prune_model.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_validation_summary.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_sampled_model_density.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_models_to_from_chains.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder_box.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_reduce.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_psi_phi_extraction.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_rdkit_utils_fragmentation.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_fmodel_and_dm.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_domains_from_pae.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder_3.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder_1.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_schrodinger_interface.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_geometry_minimization.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_pdbtools.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_altloc_chain_break.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_rigid_bond_test.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_refine_anomalous_substructure.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_model_vs_sequence.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_fmodel_misc.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_mmtbx_refinement_wrappers.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_fmodel_fd.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_reduce2_no_symmetry.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_alignment.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_ribbons.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_chain_comparison_cif.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_special_term_at_end.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_add_h_to_water.py -> build/lib/mmtbx/regression copying mmtbx/regression/__init__.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_isomorphous_difference_misc.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_angle.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_process_predicted_model.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_lrv.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_regularize_from_pdb.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder_4.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_reduce_switch.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_utils.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_arginine_geometry.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_reduce_custom_bond.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_examples.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_ss_validation_long_chainids.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_probe.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder_ccs.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_fmodel.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_validate_ligands.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_fmodel_2.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_cis_trans_peptide_link.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_rank_scale_map.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_ordered_solvent.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_cc_star.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_domains_from_pae_cif.py -> build/lib/mmtbx/regression copying mmtbx/regression/tst_polder_2.py -> build/lib/mmtbx/regression creating build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_aniso_scaler.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/scaler.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/kbu_refinery.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_mosaic.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_scaler.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/example.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/f_model_all_scales.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/multi_mask_bulk_solvent.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/bulk_solvent_and_scaling.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/__init__.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/example2.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/mosaic.py -> build/lib/mmtbx/bulk_solvent copying mmtbx/bulk_solvent/tst_flat_nonuniform.py -> build/lib/mmtbx/bulk_solvent creating build/lib/mmtbx/real_space copying mmtbx/real_space/tst.py -> build/lib/mmtbx/real_space copying mmtbx/real_space/__init__.py -> build/lib/mmtbx/real_space creating build/lib/mmtbx/ligands copying mmtbx/ligands/tst_xtal_screens.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/hierarchy_utils.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/tst_ready_set_utils.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/electrons.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/ready_set_basics.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/tst_electron_scripting.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/rdkit_utils.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/__init__.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/chemistry.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/xtal_screens.py -> build/lib/mmtbx/ligands copying mmtbx/ligands/ready_set_utils.py -> build/lib/mmtbx/ligands creating build/lib/mmtbx/building copying mmtbx/building/tst_extend_sidechains_2.py -> build/lib/mmtbx/building copying mmtbx/building/minimize_chain.py -> build/lib/mmtbx/building copying mmtbx/building/extend_sidechains.py -> build/lib/mmtbx/building copying mmtbx/building/merge_models.py -> build/lib/mmtbx/building copying mmtbx/building/tst_extend_sidechains.py -> build/lib/mmtbx/building copying mmtbx/building/loop_idealization.py -> build/lib/mmtbx/building copying mmtbx/building/__init__.py -> build/lib/mmtbx/building copying mmtbx/building/cablam_idealization.py -> build/lib/mmtbx/building creating build/lib/mmtbx/max_lik copying mmtbx/max_lik/max_like_non_uniform.py -> build/lib/mmtbx/max_lik copying mmtbx/max_lik/tst_maxlik.py -> build/lib/mmtbx/max_lik copying mmtbx/max_lik/tst_max_lik.py -> build/lib/mmtbx/max_lik copying mmtbx/max_lik/maxlik.py -> build/lib/mmtbx/max_lik copying mmtbx/max_lik/__init__.py -> build/lib/mmtbx/max_lik creating build/lib/mmtbx/utils copying mmtbx/utils/ntc.py -> build/lib/mmtbx/utils copying mmtbx/utils/rotatable_bonds.py -> build/lib/mmtbx/utils copying mmtbx/utils/fab_elbow_angle.py -> build/lib/mmtbx/utils copying mmtbx/utils/grid2d.py -> build/lib/mmtbx/utils copying mmtbx/utils/__init__.py -> build/lib/mmtbx/utils copying mmtbx/utils/tst_switch_rotamers.py -> build/lib/mmtbx/utils creating build/lib/mmtbx/nci copying mmtbx/nci/skew_kurt_plot.py -> build/lib/mmtbx/nci copying mmtbx/nci/hbond.py -> build/lib/mmtbx/nci copying mmtbx/nci/data_filtering.py -> build/lib/mmtbx/nci copying mmtbx/nci/tst_hbond.py -> build/lib/mmtbx/nci copying mmtbx/nci/__init__.py -> build/lib/mmtbx/nci creating build/lib/mmtbx/density_modification copying mmtbx/density_modification/__init__.py -> build/lib/mmtbx/density_modification copying mmtbx/density_modification/tst_density_modification.py -> build/lib/mmtbx/density_modification creating build/lib/mmtbx/ions copying mmtbx/ions/identify.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_pick_approx_zn.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_symmetry_axis.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_pickle.py -> build/lib/mmtbx/ions copying mmtbx/ions/halides.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_geometries.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_validate_mg.py -> build/lib/mmtbx/ions copying mmtbx/ions/build.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_pick_k.py -> build/lib/mmtbx/ions copying mmtbx/ions/environment.py -> build/lib/mmtbx/ions copying mmtbx/ions/geometry.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_parameters.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_validate_ca.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_pick_ca_svm.py -> build/lib/mmtbx/ions copying mmtbx/ions/__init__.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_environment.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_utils.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_pick_ca.py -> build/lib/mmtbx/ions copying mmtbx/ions/utils.py -> build/lib/mmtbx/ions copying mmtbx/ions/tst_pick_mg.py -> build/lib/mmtbx/ions creating build/lib/mmtbx/model copying mmtbx/model/model.py -> build/lib/mmtbx/model copying mmtbx/model/restraints.py -> build/lib/mmtbx/model copying mmtbx/model/__init__.py -> build/lib/mmtbx/model copying mmtbx/model/statistics.py -> build/lib/mmtbx/model copying mmtbx/model/utils.py -> build/lib/mmtbx/model creating build/lib/mmtbx/reduce copying mmtbx/reduce/Optimizers.py -> build/lib/mmtbx/reduce copying mmtbx/reduce/InteractionGraph.py -> build/lib/mmtbx/reduce copying mmtbx/reduce/Movers.py -> build/lib/mmtbx/reduce copying mmtbx/reduce/tst_mmtbx_reduce_ext.py -> build/lib/mmtbx/reduce copying mmtbx/reduce/__init__.py -> build/lib/mmtbx/reduce creating build/lib/mmtbx/f_model copying mmtbx/f_model/f_model.py -> build/lib/mmtbx/f_model copying mmtbx/f_model/f_model_info.py -> build/lib/mmtbx/f_model copying mmtbx/f_model/__init__.py -> build/lib/mmtbx/f_model creating build/lib/mmtbx/ncs copying mmtbx/ncs/cartesian_restraints.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/ligands.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/tncs.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/ncs_search.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/ncs_restraints_group_list.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/__init__.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/ncs_params.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/ncs_utils.py -> build/lib/mmtbx/ncs copying mmtbx/ncs/ncs.py -> build/lib/mmtbx/ncs creating build/lib/mmtbx/dynamics copying mmtbx/dynamics/constants.py -> build/lib/mmtbx/dynamics copying mmtbx/dynamics/ensemble_cd.py -> build/lib/mmtbx/dynamics copying mmtbx/dynamics/simulated_annealing.py -> build/lib/mmtbx/dynamics copying mmtbx/dynamics/tst_sa.py -> build/lib/mmtbx/dynamics copying mmtbx/dynamics/cartesian_dynamics.py -> build/lib/mmtbx/dynamics copying mmtbx/dynamics/tst_cartesian_dynamics.py -> build/lib/mmtbx/dynamics copying mmtbx/dynamics/__init__.py -> build/lib/mmtbx/dynamics creating build/lib/mmtbx/tls copying mmtbx/tls/perm10.py -> build/lib/mmtbx/tls copying mmtbx/tls/analysis.py -> build/lib/mmtbx/tls copying mmtbx/tls/tls_as_xyz.py -> build/lib/mmtbx/tls copying mmtbx/tls/command_line.py -> build/lib/mmtbx/tls copying mmtbx/tls/ladp.py -> build/lib/mmtbx/tls copying mmtbx/tls/optimise_amplitudes.py -> build/lib/mmtbx/tls copying mmtbx/tls/perm15.py -> build/lib/mmtbx/tls copying mmtbx/tls/tools.py -> build/lib/mmtbx/tls copying mmtbx/tls/decompose.py -> build/lib/mmtbx/tls copying mmtbx/tls/perm12.py -> build/lib/mmtbx/tls copying mmtbx/tls/__init__.py -> build/lib/mmtbx/tls copying mmtbx/tls/perm13.py -> build/lib/mmtbx/tls copying mmtbx/tls/utils.py -> build/lib/mmtbx/tls copying mmtbx/tls/perm14.py -> build/lib/mmtbx/tls copying mmtbx/tls/perm11.py -> build/lib/mmtbx/tls creating build/lib/mmtbx/solvent copying mmtbx/solvent/ensemble_ordered_solvent.py -> build/lib/mmtbx/solvent copying mmtbx/solvent/map_to_water.py -> build/lib/mmtbx/solvent copying mmtbx/solvent/__init__.py -> build/lib/mmtbx/solvent copying mmtbx/solvent/ordered_solvent.py -> build/lib/mmtbx/solvent creating build/lib/mmtbx/programs copying mmtbx/programs/undowser2.py -> build/lib/mmtbx/programs copying mmtbx/programs/suitename.py -> build/lib/mmtbx/programs copying mmtbx/programs/model_vs_sequence.py -> build/lib/mmtbx/programs copying mmtbx/programs/ramalyze.py -> build/lib/mmtbx/programs copying mmtbx/programs/barbed_wire_analysis.py -> build/lib/mmtbx/programs copying mmtbx/programs/rna_validate_suites.py -> build/lib/mmtbx/programs copying mmtbx/programs/chiral_validation.py -> build/lib/mmtbx/programs copying mmtbx/programs/fetch.py -> build/lib/mmtbx/programs copying mmtbx/programs/fmodel.py -> build/lib/mmtbx/programs copying mmtbx/programs/rna_validate_puckers.py -> build/lib/mmtbx/programs copying mmtbx/programs/atom_valence_simple.py -> build/lib/mmtbx/programs copying mmtbx/programs/cablam.py -> build/lib/mmtbx/programs copying mmtbx/programs/ligand_restraints_validation.py -> build/lib/mmtbx/programs copying mmtbx/programs/rna_validate.py -> build/lib/mmtbx/programs copying mmtbx/programs/holton_geometry_validation.py -> build/lib/mmtbx/programs copying mmtbx/programs/next_gen_residue_typing.py -> build/lib/mmtbx/programs copying mmtbx/programs/debug_riding.py -> build/lib/mmtbx/programs copying mmtbx/programs/nonbonded_overlaps.py -> build/lib/mmtbx/programs copying mmtbx/programs/process_predicted_model.py -> build/lib/mmtbx/programs copying mmtbx/programs/emringer.py -> build/lib/mmtbx/programs copying mmtbx/programs/probescore_ligand.py -> build/lib/mmtbx/programs copying mmtbx/programs/comparama.py -> build/lib/mmtbx/programs copying mmtbx/programs/water_b_factors.py -> build/lib/mmtbx/programs copying mmtbx/programs/ribbons.py -> build/lib/mmtbx/programs copying mmtbx/programs/reduce_cryoem_resolution.py -> build/lib/mmtbx/programs copying mmtbx/programs/hbond.py -> build/lib/mmtbx/programs copying mmtbx/programs/clashscore2.py -> build/lib/mmtbx/programs copying mmtbx/programs/matthews.py -> build/lib/mmtbx/programs copying mmtbx/programs/real_space_correlation.py -> build/lib/mmtbx/programs copying mmtbx/programs/polder.py -> build/lib/mmtbx/programs copying mmtbx/programs/pdbtools.py -> build/lib/mmtbx/programs copying mmtbx/programs/quantum_interface.py -> build/lib/mmtbx/programs copying mmtbx/programs/elbow_services.py -> build/lib/mmtbx/programs copying mmtbx/programs/cbetadev.py -> build/lib/mmtbx/programs copying mmtbx/programs/hydrogenate.py -> build/lib/mmtbx/programs copying mmtbx/programs/taam_minus_iam.py -> build/lib/mmtbx/programs copying mmtbx/programs/next_gen_atom_typing.py -> build/lib/mmtbx/programs copying mmtbx/programs/arginine_geometry.py -> build/lib/mmtbx/programs copying mmtbx/programs/clashscore.py -> build/lib/mmtbx/programs copying mmtbx/programs/rna_validate_bonds.py -> build/lib/mmtbx/programs copying mmtbx/programs/reduce2.py -> build/lib/mmtbx/programs copying mmtbx/programs/rotalyze.py -> build/lib/mmtbx/programs copying mmtbx/programs/ss_idealization.py -> build/lib/mmtbx/programs copying mmtbx/programs/atom_selection.py -> build/lib/mmtbx/programs copying mmtbx/programs/prepare_pdb_deposition.py -> build/lib/mmtbx/programs copying mmtbx/programs/validate_ligands.py -> build/lib/mmtbx/programs copying mmtbx/programs/probe2.py -> build/lib/mmtbx/programs copying mmtbx/programs/mask.py -> build/lib/mmtbx/programs copying mmtbx/programs/undowser.py -> build/lib/mmtbx/programs copying mmtbx/programs/mp_validate_bonds.py -> build/lib/mmtbx/programs copying mmtbx/programs/omegalyze.py -> build/lib/mmtbx/programs copying mmtbx/programs/__init__.py -> build/lib/mmtbx/programs copying mmtbx/programs/cablam_idealization.py -> build/lib/mmtbx/programs copying mmtbx/programs/xtrapol8.py -> build/lib/mmtbx/programs copying mmtbx/programs/rama_z.py -> build/lib/mmtbx/programs copying mmtbx/programs/suitename_old.py -> build/lib/mmtbx/programs copying mmtbx/programs/pdb_as_cif.py -> build/lib/mmtbx/programs copying mmtbx/programs/ss_validation.py -> build/lib/mmtbx/programs creating build/lib/mmtbx/polygon copying mmtbx/polygon/tst.py -> build/lib/mmtbx/polygon copying mmtbx/polygon/tst_polygon_data.py -> build/lib/mmtbx/polygon copying mmtbx/polygon/__init__.py -> build/lib/mmtbx/polygon copying mmtbx/polygon/output.py -> build/lib/mmtbx/polygon copying mmtbx/polygon/tst_gui.py -> build/lib/mmtbx/polygon creating build/lib/mmtbx/sisa copying mmtbx/sisa/__init__.py -> build/lib/mmtbx/sisa creating build/lib/mmtbx/rotamer copying mmtbx/rotamer/nqh.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/sidechain_angles.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/graphics.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/ramachandran_eval.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/tst_rotamer_eval.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/rotamer_eval.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/__init__.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/ramachandran_eval_deprecated.py -> build/lib/mmtbx/rotamer copying mmtbx/rotamer/n_dim_table.py -> build/lib/mmtbx/rotamer creating build/lib/mmtbx/ringer copying mmtbx/ringer/tst_emringer.py -> build/lib/mmtbx/ringer copying mmtbx/ringer/em_scoring.py -> build/lib/mmtbx/ringer copying mmtbx/ringer/emringer.py -> build/lib/mmtbx/ringer copying mmtbx/ringer/tst_em_rscc.py -> build/lib/mmtbx/ringer copying mmtbx/ringer/em_rolling.py -> build/lib/mmtbx/ringer copying mmtbx/ringer/__init__.py -> build/lib/mmtbx/ringer copying mmtbx/ringer/em_rscc.py -> build/lib/mmtbx/ringer creating build/lib/mmtbx/rsr copying mmtbx/rsr/tst.py -> build/lib/mmtbx/rsr copying mmtbx/rsr/__init__.py -> build/lib/mmtbx/rsr creating build/lib/mmtbx/probe copying mmtbx/probe/tst_mmtbx_probe_ext.py -> build/lib/mmtbx/probe copying mmtbx/probe/AtomTypes.py -> build/lib/mmtbx/probe copying mmtbx/probe/Helpers.py -> build/lib/mmtbx/probe copying mmtbx/probe/__init__.py -> build/lib/mmtbx/probe copying mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py -> build/lib/mmtbx/probe creating build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation_4.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_idealized_aa.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_metal_coordination.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/mmtbx_utils.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/hydrogen_restrictions.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/cif_types.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_glyco_coordination.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/pdb_interpretation.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_cif_triage.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/glyco_utils.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_carbo_linking.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_neutron_distance.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_iron_sulfur_clusters.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation_3.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_selection.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/glyco_chiral_values.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/rna_sugar_pucker_analysis.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_rotamer_utils.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/idealized_aa.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/conv_v2_v3.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_glyco_hand.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_rna_dna_interpretation.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_cif_types.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/correct_hydrogen_geometries.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_chg.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_motif.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/server.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/populate_auto_linking_origin_ids.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/bondlength_defaults.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_all_cif_files.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_user_supplied_library.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/conformation_dependent_restraints.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/rotamer_utils.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_paral_geo.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation_2.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/linking_utils.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_server.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/cif_triage.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation_5.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_correct_hydrogens.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/__init__.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_superpose_ideal.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_deuterium_terminii.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_protein_interpretation.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_linking.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/linking_setup.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/linking_mixins.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/geostd_utils.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py -> build/lib/mmtbx/monomer_library copying mmtbx/monomer_library/tst_geo_reduce_for_tardy.py -> build/lib/mmtbx/monomer_library creating build/lib/mmtbx/twinning copying mmtbx/twinning/probabalistic_detwinning.py -> build/lib/mmtbx/twinning copying mmtbx/twinning/__init__.py -> build/lib/mmtbx/twinning copying mmtbx/twinning/twin_f_model.py -> build/lib/mmtbx/twinning creating build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/regularize_from_pdb.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/tst.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/find_ss_from_ca.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/tst_segid.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/tst_insertion_codes.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/secondary_structure_params.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/__init__.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/proteins.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/utils.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/ss_validation.py -> build/lib/mmtbx/secondary_structure copying mmtbx/secondary_structure/nucleic_acids.py -> build/lib/mmtbx/secondary_structure creating build/lib/mmtbx/atomic_environment_vectors copying mmtbx/atomic_environment_vectors/tst.py -> build/lib/mmtbx/atomic_environment_vectors copying mmtbx/atomic_environment_vectors/__init__.py -> build/lib/mmtbx/atomic_environment_vectors creating build/lib/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/tst.py -> build/lib/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/sample_rotamers.py -> build/lib/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/rotamer_manager.py -> build/lib/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/all_his.py -> build/lib/mmtbx/idealized_aa_residues copying mmtbx/idealized_aa_residues/__init__.py -> build/lib/mmtbx/idealized_aa_residues creating build/lib/mmtbx/scaling copying mmtbx/scaling/bayesian_estimator.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/make_param.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/outlier_plots.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_xtriage_twin_analyses.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/plan_sad_experiment.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/outlier_rejection.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/mean_f_rms_f.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/relative_wilson.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_absences.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_scaling.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/pre_scale.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/ta_alpha_beta_calc.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/basic_analyses.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/random_omit.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/xtriage.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/twmad_scale.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/sigmaa_estimation.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/matthews.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/remove_outliers.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_mean_f_rms_f.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_outlier.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/massage_twin_detwin_data.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_sigmaa.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/relative_scaling.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/absence_likelihood.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/absolute_scaling.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/thorough_outlier_test.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_massage_data.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/__init__.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/absences.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/fa_estimation.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/pair_analyses.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_bayesian_estimator.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/data_statistics.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/twin_analyses.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_xtriage.py -> build/lib/mmtbx/scaling copying mmtbx/scaling/tst_plan_sad_experiment.py -> build/lib/mmtbx/scaling creating build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_03.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/pair_interaction.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_00.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_05.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_04.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_02.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/tst_01.py -> build/lib/mmtbx/pair_interaction copying mmtbx/pair_interaction/__init__.py -> build/lib/mmtbx/pair_interaction creating build/lib/mmtbx/ias copying mmtbx/ias/tst_ias.py -> build/lib/mmtbx/ias copying mmtbx/ias/__init__.py -> build/lib/mmtbx/ias creating build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/base_qm_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_reference_coordinate.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/reference.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/ramachandran.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/external.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/geo_file_parsing.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/mopac_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_c_beta_restraints.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/c_beta.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_replace_in_place.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_xtb_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_reference_coordinate2.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_ramachandran.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_geo_file_parsing.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/quantum_interface.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/qm_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/tst_orca_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/__init__.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/quantum_restraints_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/qi_utils.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/afitt.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/xtb_manager.py -> build/lib/mmtbx/geometry_restraints copying mmtbx/geometry_restraints/orca_manager.py -> build/lib/mmtbx/geometry_restraints creating build/lib/mmtbx/disorder copying mmtbx/disorder/backbone.py -> build/lib/mmtbx/disorder copying mmtbx/disorder/tst.py -> build/lib/mmtbx/disorder copying mmtbx/disorder/tst_backbone.py -> build/lib/mmtbx/disorder copying mmtbx/disorder/analyze_model.py -> build/lib/mmtbx/disorder copying mmtbx/disorder/__init__.py -> build/lib/mmtbx/disorder copying mmtbx/disorder/tst_analyze_model.py -> build/lib/mmtbx/disorder creating build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/check_cdl_database.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_mcl_01.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/rdl_database.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/density_dependent_restraints.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/omega.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/multi_residue_cdl_class.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/mcl_sf4_coordination.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_cdl.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/sf4_restraints.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_mcl_03.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/altloc_weighting.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/mcl.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/LinkedResidues.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/cdl_database.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/investigate_rotamer_space.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/testing_utils.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_multi_residue_rna.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_mcl_02.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_pH_mechanism.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_omega_cdl.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/cdl_setup.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/multi_base_class.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/omega_database.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/hydrogen_bonding.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/cdl_svl_database.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/cdl_utils.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/bond_angle_registry.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/multi_residue_class.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/metal_coordination_library.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/hpdl_database.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/__init__.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_enol_peptide.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_cdl_esd.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/utils.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_hpdl.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/enol_peptide_restraints.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_mutli_residue.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/nucleotides.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/pH_dependent_restraints.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/tst_rdl.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/histidines.py -> build/lib/mmtbx/conformation_dependent_library copying mmtbx/conformation_dependent_library/rotamers.py -> build/lib/mmtbx/conformation_dependent_library creating build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_monitor.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_2.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_5.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_4.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_weight.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_water.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_individual_sites_2.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_7.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_6.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_rigid_body.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_small_molecule.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_selection.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_residues.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_1H.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_0H.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_3.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_his.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_6.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_1.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/weight.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_1H.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_3.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_individual_sites_3.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_individual_sites_1.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_water.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_0.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/rigid_body.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/individual_sites.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residues_2.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/__init__.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/explode_and_refine.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/fit_residue.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/utils.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_5.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/adp.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_1.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/tst_fit_residue_4.py -> build/lib/mmtbx/refinement/real_space copying mmtbx/refinement/real_space/occupancy.py -> build/lib/mmtbx/refinement/real_space creating build/lib/mmtbx/refinement/ensemble_refinement copying mmtbx/refinement/ensemble_refinement/ensemble_utils.py -> build/lib/mmtbx/refinement/ensemble_refinement copying mmtbx/refinement/ensemble_refinement/ensemble_probability.py -> build/lib/mmtbx/refinement/ensemble_refinement copying mmtbx/refinement/ensemble_refinement/__init__.py -> build/lib/mmtbx/refinement/ensemble_refinement creating build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_3.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_suitename.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_rama_z_02.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_probe2_asu_bond_proxies.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_cbetadev_02.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_do_flips_clashscore.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_arguments.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_4.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_undowser2.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_undowser.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_chiral_validation.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_experimental.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_mp_validate_bonds.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_mp_geo_endtoend.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_omegalyze.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_cbetadev.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_mp_geo.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_2.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_symmetry_SS.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_model_properties.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_rama_z_01.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_ramalyze2.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_ramalyze_rare.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_rna_validate.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_1.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_keep_hydrogens.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_barbed_wire_analysis.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_cablam.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_clashscore.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/__init__.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_molprobity_5.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_rotalyze.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_utils.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_find_region_max_value.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/run_restraints.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_clashscore_2.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_restraints.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_ramalyze.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_waters.py -> build/lib/mmtbx/validation/regression copying mmtbx/validation/regression/tst_cablam_2.py -> build/lib/mmtbx/validation/regression creating build/lib/mmtbx/validation/ramachandran copying mmtbx/validation/ramachandran/convert_from_text.py -> build/lib/mmtbx/validation/ramachandran copying mmtbx/validation/ramachandran/__init__.py -> build/lib/mmtbx/validation/ramachandran creating build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/mp_geo.py -> build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/percentile_clashscore.py -> build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/kinemage_templates.py -> build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/probescore_ligand.py -> build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/percentile_mpscore.py -> build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/table_from_json.py -> build/lib/mmtbx/validation/molprobity copying mmtbx/validation/molprobity/__init__.py -> build/lib/mmtbx/validation/molprobity creating build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_symmetry.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_ncs.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_merge.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_neutralize_scatterers.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_2.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_pairs_within.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_dedeuterate.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_ramachandran.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_biomt_mtrix_2.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_utils_merge_models.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_remove_alternative_conformations.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_cart_ref_restraints.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_mtrix.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_tors_ref_restraints.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/__init__.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_biomt_mtrix.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model.py -> build/lib/mmtbx/regression/model copying mmtbx/regression/model/tst_model_get_vdw_radii.py -> build/lib/mmtbx/regression/model creating build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_ncs_restraints_group_list.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_ncs_search.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_minimization_ncs_constraints.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_ncs_search_flips.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_ncs_utils.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/__init__.py -> build/lib/mmtbx/regression/ncs copying mmtbx/regression/ncs/tst_restraints.py -> build/lib/mmtbx/regression/ncs creating build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_utils.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_get_t_scheme.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_analysis.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_optimise_amplitudes.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_as_xyz.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/__init__.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py -> build/lib/mmtbx/regression/tls copying mmtbx/regression/tls/tst_tls_refinement_fft.py -> build/lib/mmtbx/regression/tls creating build/lib/mmtbx/building/ligands copying mmtbx/building/ligands/tst_00.py -> build/lib/mmtbx/building/ligands copying mmtbx/building/ligands/lifi.py -> build/lib/mmtbx/building/ligands copying mmtbx/building/ligands/__init__.py -> build/lib/mmtbx/building/ligands creating build/lib/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/starting_conformations.py -> build/lib/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/berkeley_ramalyze.py -> build/lib/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/ccd.py -> build/lib/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/__init__.py -> build/lib/mmtbx/building/loop_closure copying mmtbx/building/loop_closure/utils.py -> build/lib/mmtbx/building/loop_closure creating build/lib/mmtbx/ions/svm copying mmtbx/ions/svm/dump_sites.py -> build/lib/mmtbx/ions/svm copying mmtbx/ions/svm/tst_classifier_01.py -> build/lib/mmtbx/ions/svm copying mmtbx/ions/svm/__init__.py -> build/lib/mmtbx/ions/svm copying mmtbx/ions/svm/utils.py -> build/lib/mmtbx/ions/svm copying mmtbx/ions/svm/tst_classifier_02.py -> build/lib/mmtbx/ions/svm creating build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_ga.py -> build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_masks.py -> build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_util.py -> build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_input.py -> build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_mtz.py -> build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/mod_optimize.py -> build/lib/mmtbx/sisa/optimize copying mmtbx/sisa/optimize/__init__.py -> build/lib/mmtbx/sisa/optimize creating build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_1.py -> build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_2.py -> build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_ss_id_ncs.py -> build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_3.py -> build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/ss_idealization.py -> build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/tst_io.py -> build/lib/mmtbx/secondary_structure/build copying mmtbx/secondary_structure/build/__init__.py -> build/lib/mmtbx/secondary_structure/build creating build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/reference_model.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_reference_ramachandran.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_ter_records.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/tst_reference_hbond.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/__init__.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/utils.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints copying mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py -> build/lib/mmtbx/geometry_restraints/torsion_restraints creating build/lib/xcif/regression copying xcif/regression/tst_non_strict_mode.py -> build/lib/xcif/regression copying xcif/regression/tst_api_compat.py -> build/lib/xcif/regression copying xcif/regression/tst_iotbx_cif_reader_engine.py -> build/lib/xcif/regression copying xcif/regression/tst_parse_verify.py -> build/lib/xcif/regression copying xcif/regression/tst_quoted_string_delimiter.py -> build/lib/xcif/regression copying xcif/regression/tst_utf8.py -> build/lib/xcif/regression copying xcif/regression/tst_example_tokenize.py -> build/lib/xcif/regression copying xcif/regression/tst_roundtrip.py -> build/lib/xcif/regression copying xcif/regression/tst_iotbx_cif_reader_parity.py -> build/lib/xcif/regression copying xcif/regression/tst_semicolon_field_strict.py -> build/lib/xcif/regression copying xcif/regression/tst_gil_release.py -> build/lib/xcif/regression copying xcif/regression/tst_string_interning.py -> build/lib/xcif/regression copying xcif/regression/__init__.py -> build/lib/xcif/regression copying xcif/regression/tst_pdb_coordinates.py -> build/lib/xcif/regression copying xcif/regression/tst_bindings.py -> build/lib/xcif/regression copying xcif/regression/tst_pdb_sf.py -> build/lib/xcif/regression copying xcif/regression/tst_example_parse.py -> build/lib/xcif/regression copying xcif/regression/tst_memory.py -> build/lib/xcif/regression creating build/lib/xcif/benchmarks copying xcif/benchmarks/run_benchmarks.py -> build/lib/xcif/benchmarks copying xcif/benchmarks/__init__.py -> build/lib/xcif/benchmarks creating build/lib/fable/command_line copying fable/command_line/split.py -> build/lib/fable/command_line copying fable/command_line/show_calls.py -> build/lib/fable/command_line copying fable/command_line/insert_write_at_start_of_each_procedure.py -> build/lib/fable/command_line copying fable/command_line/__init__.py -> build/lib/fable/command_line copying fable/command_line/fem_include_search_paths.py -> build/lib/fable/command_line copying fable/command_line/read.py -> build/lib/fable/command_line copying fable/command_line/cout.py -> build/lib/fable/command_line creating build/lib/smtbx/refinement copying smtbx/refinement/weighting_schemes.py -> build/lib/smtbx/refinement copying smtbx/refinement/least_squares.py -> build/lib/smtbx/refinement copying smtbx/refinement/__init__.py -> build/lib/smtbx/refinement creating build/lib/smtbx/masks copying smtbx/masks/__init__.py -> build/lib/smtbx/masks creating build/lib/smtbx/absolute_structure copying smtbx/absolute_structure/__init__.py -> build/lib/smtbx/absolute_structure creating build/lib/smtbx/command_line copying smtbx/command_line/absolute_structure.py -> build/lib/smtbx/command_line copying smtbx/command_line/anom_refine.py -> build/lib/smtbx/command_line copying smtbx/command_line/refine.py -> build/lib/smtbx/command_line copying smtbx/command_line/masks.py -> build/lib/smtbx/command_line copying smtbx/command_line/__init__.py -> build/lib/smtbx/command_line copying smtbx/command_line/benchmark_refinement.py -> build/lib/smtbx/command_line creating build/lib/smtbx/regression copying smtbx/regression/tst_commandline_anomrefine.py -> build/lib/smtbx/regression copying smtbx/regression/tst_commandline_refine.py -> build/lib/smtbx/regression copying smtbx/regression/__init__.py -> build/lib/smtbx/regression creating build/lib/smtbx/stl copying smtbx/stl/map.py -> build/lib/smtbx/stl copying smtbx/stl/__init__.py -> build/lib/smtbx/stl creating build/lib/smtbx/ab_initio copying smtbx/ab_initio/charge_flipping.py -> build/lib/smtbx/ab_initio copying smtbx/ab_initio/__init__.py -> build/lib/smtbx/ab_initio creating build/lib/smtbx/array_family copying smtbx/array_family/__init__.py -> build/lib/smtbx/array_family creating build/lib/smtbx/structure_factors copying smtbx/structure_factors/__init__.py -> build/lib/smtbx/structure_factors creating build/lib/smtbx/source_generators copying smtbx/source_generators/flex_fwd_h.py -> build/lib/smtbx/source_generators copying smtbx/source_generators/__init__.py -> build/lib/smtbx/source_generators creating build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/site.py -> build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/rigid.py -> build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/fpfdp.py -> build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/all.py -> build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/__init__.py -> build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/adp.py -> build/lib/smtbx/refinement/constraints copying smtbx/refinement/constraints/occupancy.py -> build/lib/smtbx/refinement/constraints creating build/lib/smtbx/refinement/restraints copying smtbx/refinement/restraints/origin_fixing_restraints.py -> build/lib/smtbx/refinement/restraints copying smtbx/refinement/restraints/__init__.py -> build/lib/smtbx/refinement/restraints copying smtbx/refinement/restraints/adp_restraints.py -> build/lib/smtbx/refinement/restraints creating build/lib/smtbx/refinement/constraints/geometrical copying smtbx/refinement/constraints/geometrical/hydrogens.py -> build/lib/smtbx/refinement/constraints/geometrical copying smtbx/refinement/constraints/geometrical/all.py -> build/lib/smtbx/refinement/constraints/geometrical copying smtbx/refinement/constraints/geometrical/__init__.py -> build/lib/smtbx/refinement/constraints/geometrical creating build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_occupancies.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_lbfgs.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_disorder.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_reparametrisation.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_same_group.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_rigid.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/__init__.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_constrained_structure.py -> build/lib/smtbx/refinement/constraints/tests copying smtbx/refinement/constraints/tests/tst_direction.py -> build/lib/smtbx/refinement/constraints/tests creating build/lib/smtbx/regression/test_data copying smtbx/regression/test_data/__init__.py -> build/lib/smtbx/regression/test_data creating build/lib/smtbx/ab_initio/tests copying smtbx/ab_initio/tests/tst_charge_flipping.py -> build/lib/smtbx/ab_initio/tests copying smtbx/ab_initio/tests/tst_ab_initio_ext.py -> build/lib/smtbx/ab_initio/tests copying smtbx/ab_initio/tests/__init__.py -> build/lib/smtbx/ab_initio/tests creating build/lib/smtbx/structure_factors/direct copying smtbx/structure_factors/direct/__init__.py -> build/lib/smtbx/structure_factors/direct creating build/lib/wxtbx/reports copying wxtbx/reports/pdb_symmetry.py -> build/lib/wxtbx/reports copying wxtbx/reports/blast.py -> build/lib/wxtbx/reports copying wxtbx/reports/__init__.py -> build/lib/wxtbx/reports creating build/lib/wxtbx/command_line copying wxtbx/command_line/plan_sad_experiment.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/loggraph.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/pdb_editor.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/inspect_r_free_flags.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/plot_anomalous_scattering.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/xtriage.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/anomalous_differences_histogram.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/b_plot.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/wxpython.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/show_file_info.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/__init__.py -> build/lib/wxtbx/command_line copying wxtbx/command_line/pdb_statistics.py -> build/lib/wxtbx/command_line creating build/lib/wxtbx/regression copying wxtbx/regression/tst_process_control.py -> build/lib/wxtbx/regression copying wxtbx/regression/tst_headless_construct.py -> build/lib/wxtbx/regression copying wxtbx/regression/_warnings.py -> build/lib/wxtbx/regression copying wxtbx/regression/tst_b_plot.py -> build/lib/wxtbx/regression copying wxtbx/regression/_headless_construct_cases.py -> build/lib/wxtbx/regression copying wxtbx/regression/__init__.py -> build/lib/wxtbx/regression copying wxtbx/regression/tst_imports.py -> build/lib/wxtbx/regression creating build/lib/wxtbx/plots copying wxtbx/plots/molprobity.py -> build/lib/wxtbx/plots copying wxtbx/plots/emringer.py -> build/lib/wxtbx/plots copying wxtbx/plots/__init__.py -> build/lib/wxtbx/plots creating build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/choice_multi.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/boolctrl.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/tribool.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/tree.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/choice.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/strctrl.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/floats.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/misc_ctrls.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/floatctrl.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/symop.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/strings.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/numbers.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/space_group.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/__init__.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/ints.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/path.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/array_label.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/text_base.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/intctrl.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/unit_cell.py -> build/lib/wxtbx/phil_controls copying wxtbx/phil_controls/simple_dialogs.py -> build/lib/wxtbx/phil_controls creating build/lib/cctbx/xray copying cctbx/xray/scatterer.py -> build/lib/cctbx/xray copying cctbx/xray/target_functors.py -> build/lib/cctbx/xray copying cctbx/xray/minimization.py -> build/lib/cctbx/xray copying cctbx/xray/structure.py -> build/lib/cctbx/xray copying cctbx/xray/ext.py -> build/lib/cctbx/xray copying cctbx/xray/weighting_schemes.py -> build/lib/cctbx/xray copying cctbx/xray/observation_types.py -> build/lib/cctbx/xray copying cctbx/xray/__init__.py -> build/lib/cctbx/xray creating build/lib/cctbx/masks copying cctbx/masks/__init__.py -> build/lib/cctbx/masks creating build/lib/cctbx/command_line copying cctbx/command_line/structure_factor_timings.py -> build/lib/cctbx/command_line copying cctbx/command_line/subgroups.py -> build/lib/cctbx/command_line copying cctbx/command_line/samosa_scale.py -> build/lib/cctbx/command_line copying cctbx/command_line/space_group_info.py -> build/lib/cctbx/command_line copying cctbx/command_line/cod_select_and_pickle.py -> build/lib/cctbx/command_line copying cctbx/command_line/cctbx_test_nightly.py -> build/lib/cctbx/command_line copying cctbx/command_line/brehm_diederichs.py -> build/lib/cctbx/command_line copying cctbx/command_line/samosa_join.py -> build/lib/cctbx/command_line copying cctbx/command_line/euclidean_model_matching.py -> build/lib/cctbx/command_line copying cctbx/command_line/precession_view.py -> build/lib/cctbx/command_line copying cctbx/command_line/version.py -> build/lib/cctbx/command_line copying cctbx/command_line/qscore.py -> build/lib/cctbx/command_line copying cctbx/command_line/segment_and_split_map.py -> build/lib/cctbx/command_line copying cctbx/command_line/wavelength_units.py -> build/lib/cctbx/command_line copying cctbx/command_line/__init__.py -> build/lib/cctbx/command_line copying cctbx/command_line/auto_sharpen.py -> build/lib/cctbx/command_line copying cctbx/command_line/find_reticular_twin_laws.py -> build/lib/cctbx/command_line copying cctbx/command_line/diffuse.py -> build/lib/cctbx/command_line copying cctbx/command_line/eltbx.show_fp_fdp.py -> build/lib/cctbx/command_line copying cctbx/command_line/form_factor_query.py -> build/lib/cctbx/command_line creating build/lib/cctbx/sgtbx copying cctbx/sgtbx/sys_abs_equiv.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/sub_lattice_tools.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/plane_groups.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/reticular_pg_tools.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/subgroups.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/harker.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/cosets.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/rational_matrices_point_groups.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/show_cosets.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/bravais_types.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/lattice_symmetry.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/literal_description.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/__init__.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/reticular_twin_laws.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/pointgroup_tools.py -> build/lib/cctbx/sgtbx copying cctbx/sgtbx/symbol_confidence.py -> build/lib/cctbx/sgtbx creating build/lib/cctbx/covariance copying cctbx/covariance/__init__.py -> build/lib/cctbx/covariance creating build/lib/cctbx/geometry copying cctbx/geometry/__init__.py -> build/lib/cctbx/geometry creating build/lib/cctbx/maptbx copying cctbx/maptbx/refine_scales_errors.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_qscore.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_resolution_from_map_and_model.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/real_space_refinement_simple.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/resolution_from_map_and_model.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/servalcat_difference_map.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/box.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_mask.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_asymmetric_map.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_interpolation_2.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_real_space_refinement_simple.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/minimization.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/fsc_curve.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/prepare_map_for_docking.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_target_and_gradients.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/prepare_map_for_refinement.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_atom_radius_as_central_peak_width.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_get_percentile_cutoffs.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_MapPeakLocator.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/qscore.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_atom_curves.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_map_peak_3d_as_2d.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/segment_and_split_map.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_ccp.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/mask.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/__init__.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_bcr.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/auto_sharpen.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/refine_sharpening.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/mem.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/map_symmetry.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_interpolation.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_loft.py -> build/lib/cctbx/maptbx copying cctbx/maptbx/tst_peak_volume_estimate.py -> build/lib/cctbx/maptbx creating build/lib/cctbx/regression copying cctbx/regression/tst_geometry_restraints_lbfgs.py -> build/lib/cctbx/regression copying cctbx/regression/tst_crystal_asu_clusters.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_tidy_pickling.py -> build/lib/cctbx/regression copying cctbx/regression/tst_xray_derivatives.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_site_constraints.py -> build/lib/cctbx/regression copying cctbx/regression/tst_krivy_gruber.py -> build/lib/cctbx/regression copying cctbx/regression/tst_french_wilson.py -> build/lib/cctbx/regression copying cctbx/regression/tst_xray_minimization.py -> build/lib/cctbx/regression copying cctbx/regression/tst_wavelength_units.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_special_op_simplifier.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller_merge_equivalents.py -> build/lib/cctbx/regression copying cctbx/regression/tst_prepare_map_for_docking.py -> build/lib/cctbx/regression copying cctbx/regression/tst_show_cosets.py -> build/lib/cctbx/regression copying cctbx/regression/tst_web_change_basis.py -> build/lib/cctbx/regression copying cctbx/regression/tst_xray_minimization_failure.py -> build/lib/cctbx/regression copying cctbx/regression/tst_create_models_or_maps.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller_double_step_filtration.py -> build/lib/cctbx/regression copying cctbx/regression/tst_adp_constraints_cartesian.py -> build/lib/cctbx/regression copying cctbx/regression/tst_xray_fast_gradients.py -> build/lib/cctbx/regression copying cctbx/regression/tst_f_model.py -> build/lib/cctbx/regression copying cctbx/regression/tst_adp_constraints.py -> build/lib/cctbx/regression copying cctbx/regression/tst_pair_asu_table.py -> build/lib/cctbx/regression copying cctbx/regression/tst_geometry_restraints.py -> build/lib/cctbx/regression copying cctbx/regression/tst_xray_target_functors.py -> build/lib/cctbx/regression copying cctbx/regression/tst_grm_modifications_rm.py -> build/lib/cctbx/regression copying cctbx/regression/tst_coordination_sequences.py -> build/lib/cctbx/regression copying cctbx/regression/tst_expand_to_p1.py -> build/lib/cctbx/regression copying cctbx/regression/tst_xray.py -> build/lib/cctbx/regression copying cctbx/regression/tst_crystal.py -> build/lib/cctbx/regression copying cctbx/regression/tst_mem_2.py -> build/lib/cctbx/regression copying cctbx/regression/tst_twin_target.py -> build/lib/cctbx/regression copying cctbx/regression/tst_statistics_graphs.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sf_low_res_accuracy.py -> build/lib/cctbx/regression copying cctbx/regression/tst_find_best_cell.py -> build/lib/cctbx/regression copying cctbx/regression/tst_maptbx_structure_factors.py -> build/lib/cctbx/regression copying cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller_data_manipulation.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_subgroups.py -> build/lib/cctbx/regression copying cctbx/regression/tst_reflection_statistics.py -> build/lib/cctbx/regression copying cctbx/regression/tst_connectivity_allsym.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sphericity.py -> build/lib/cctbx/regression copying cctbx/regression/tst_connectivity.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sampled_model_density.py -> build/lib/cctbx/regression copying cctbx/regression/tst_geometry_restraints_2.py -> build/lib/cctbx/regression copying cctbx/regression/tst_amplitude_normalisation.py -> build/lib/cctbx/regression copying cctbx/regression/tst_maptbx_mask.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller_statistics.py -> build/lib/cctbx/regression copying cctbx/regression/tst_fourier_transform_real_part_at_x.py -> build/lib/cctbx/regression copying cctbx/regression/tst_map_is_periodic.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_harker.py -> build/lib/cctbx/regression copying cctbx/regression/tst_diffuse.py -> build/lib/cctbx/regression copying cctbx/regression/tst_wilson_plot.py -> build/lib/cctbx/regression copying cctbx/regression/tst_pointgroup_tools.py -> build/lib/cctbx/regression copying cctbx/regression/tst_crystal_close_packing.py -> build/lib/cctbx/regression copying cctbx/regression/tst_weighting_schemes.py -> build/lib/cctbx/regression copying cctbx/regression/tst_loc_res.py -> build/lib/cctbx/regression copying cctbx/regression/tst_grm_pickling.py -> build/lib/cctbx/regression copying cctbx/regression/tst_r_free_utils.py -> build/lib/cctbx/regression copying cctbx/regression/tst_space_group_type_tidy_cb_op_t.py -> build/lib/cctbx/regression copying cctbx/regression/tst_grm_modifications.py -> build/lib/cctbx/regression copying cctbx/regression/tst_mem.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_denominators.py -> build/lib/cctbx/regression copying cctbx/regression/tst_fast_nv1995.py -> build/lib/cctbx/regression copying cctbx/regression/tst_adp_aniso_restraints.py -> build/lib/cctbx/regression copying cctbx/regression/tst_math_module.py -> build/lib/cctbx/regression copying cctbx/regression/tst_direct_space_asu.py -> build/lib/cctbx/regression copying cctbx/regression/__init__.py -> build/lib/cctbx/regression copying cctbx/regression/tst_triplet_generator.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller_lookup_utils.py -> build/lib/cctbx/regression copying cctbx/regression/tst_match_bijvoet_mates.py -> build/lib/cctbx/regression copying cctbx/regression/tst_reciprocal_space_asu.py -> build/lib/cctbx/regression copying cctbx/regression/tst_fcalc_fft_stability.py -> build/lib/cctbx/regression copying cctbx/regression/tst_map_weights_for_symmetry_summation.py -> build/lib/cctbx/regression copying cctbx/regression/tst_maptbx_box.py -> build/lib/cctbx/regression copying cctbx/regression/tst_emma.py -> build/lib/cctbx/regression copying cctbx/regression/tst_niggli_reduction_cpp.py -> build/lib/cctbx/regression copying cctbx/regression/tst_direct_scaling.py -> build/lib/cctbx/regression copying cctbx/regression/tst_sgtbx_lattice_symmetry.py -> build/lib/cctbx/regression copying cctbx/regression/tst_refine_xray_curvs.py -> build/lib/cctbx/regression copying cctbx/regression/tst_change_basis.py -> build/lib/cctbx/regression copying cctbx/regression/tst_miller_fft_map.py -> build/lib/cctbx/regression copying cctbx/regression/tst_grouped_data.py -> build/lib/cctbx/regression creating build/lib/cctbx/web copying cctbx/web/dispatcher.py -> build/lib/cctbx/web copying cctbx/web/change_setting.py -> build/lib/cctbx/web copying cctbx/web/iotbx_cif_validate.py -> build/lib/cctbx/web copying cctbx/web/frac_cart.py -> build/lib/cctbx/web copying cctbx/web/explore_symmetry.py -> build/lib/cctbx/web copying cctbx/web/libtbx_help.py -> build/lib/cctbx/web copying cctbx/web/change_hand.py -> build/lib/cctbx/web copying cctbx/web/browse_settings.py -> build/lib/cctbx/web copying cctbx/web/shelx.py -> build/lib/cctbx/web copying cctbx/web/structure_factors_pdb.py -> build/lib/cctbx/web copying cctbx/web/phase_o_phrenia.py -> build/lib/cctbx/web copying cctbx/web/emma.py -> build/lib/cctbx/web copying cctbx/web/multiple_cell.py -> build/lib/cctbx/web copying cctbx/web/lattice_symmetry.py -> build/lib/cctbx/web copying cctbx/web/all_axes.py -> build/lib/cctbx/web copying cctbx/web/wyckoff.py -> build/lib/cctbx/web copying cctbx/web/cgi_utils.py -> build/lib/cctbx/web copying cctbx/web/replay.py -> build/lib/cctbx/web copying cctbx/web/structure_factors.py -> build/lib/cctbx/web copying cctbx/web/__init__.py -> build/lib/cctbx/web copying cctbx/web/io_utils.py -> build/lib/cctbx/web copying cctbx/web/change_basis.py -> build/lib/cctbx/web creating build/lib/cctbx/development copying cctbx/development/debug_utils.py -> build/lib/cctbx/development copying cctbx/development/run_shelx.py -> build/lib/cctbx/development copying cctbx/development/approx_amplitude_vs_resolution.py -> build/lib/cctbx/development copying cctbx/development/make_cns_input.py -> build/lib/cctbx/development copying cctbx/development/tst_cns_epsilon.py -> build/lib/cctbx/development copying cctbx/development/make_settings.py -> build/lib/cctbx/development copying cctbx/development/fmt_utils.py -> build/lib/cctbx/development copying cctbx/development/github.py -> build/lib/cctbx/development copying cctbx/development/electron_density_sampling.py -> build/lib/cctbx/development copying cctbx/development/create_models_or_maps.py -> build/lib/cctbx/development copying cctbx/development/cns_density_modification.py -> build/lib/cctbx/development copying cctbx/development/random_structure.py -> build/lib/cctbx/development copying cctbx/development/tst_cns_hl.py -> build/lib/cctbx/development copying cctbx/development/direct_or_fft.py -> build/lib/cctbx/development copying cctbx/development/run_shelx76.py -> build/lib/cctbx/development copying cctbx/development/__init__.py -> build/lib/cctbx/development copying cctbx/development/space_group_option_parser.py -> build/lib/cctbx/development copying cctbx/development/structure_factor_utils.py -> build/lib/cctbx/development creating build/lib/cctbx/macro_mol copying cctbx/macro_mol/__init__.py -> build/lib/cctbx/macro_mol copying cctbx/macro_mol/rotation_parameters.py -> build/lib/cctbx/macro_mol creating build/lib/cctbx/omz copying cctbx/omz/eval_iso_vs_refined.py -> build/lib/cctbx/omz copying cctbx/omz/tst_bfgs.py -> build/lib/cctbx/omz copying cctbx/omz/cod_refine.py -> build/lib/cctbx/omz copying cctbx/omz/cod_select_and_pickle.py -> build/lib/cctbx/omz copying cctbx/omz/dev.py -> build/lib/cctbx/omz copying cctbx/omz/bfgs.py -> build/lib/cctbx/omz copying cctbx/omz/pdb_dev.py -> build/lib/cctbx/omz copying cctbx/omz/tst_dev.py -> build/lib/cctbx/omz copying cctbx/omz/__init__.py -> build/lib/cctbx/omz copying cctbx/omz/tardy_adaptor.py -> build/lib/cctbx/omz copying cctbx/omz/cif_refine.py -> build/lib/cctbx/omz creating build/lib/cctbx/examples copying cctbx/examples/space_group_matrices.py -> build/lib/cctbx/examples copying cctbx/examples/g_exp_i_alpha_derivatives.py -> build/lib/cctbx/examples copying cctbx/examples/site_symmetry_constraints.py -> build/lib/cctbx/examples copying cctbx/examples/list_non_principal_continuous_shifts.py -> build/lib/cctbx/examples copying cctbx/examples/tst_phase_o_phrenia.py -> build/lib/cctbx/examples copying cctbx/examples/adp_symmetry_constraints.py -> build/lib/cctbx/examples copying cctbx/examples/unit_cell_minimizers.py -> build/lib/cctbx/examples copying cctbx/examples/hirshfeld_test.py -> build/lib/cctbx/examples copying cctbx/examples/sub_group_graph.py -> build/lib/cctbx/examples copying cctbx/examples/random_puckers.py -> build/lib/cctbx/examples copying cctbx/examples/structure_factor_derivatives_4.py -> build/lib/cctbx/examples copying cctbx/examples/fft_map_electron_density_around_atom.py -> build/lib/cctbx/examples copying cctbx/examples/miller_transform.py -> build/lib/cctbx/examples copying cctbx/examples/tst_structure_factor_derivatives_4.py -> build/lib/cctbx/examples copying cctbx/examples/view_fft_map.py -> build/lib/cctbx/examples copying cctbx/examples/cr2o3_consistency_checks.py -> build/lib/cctbx/examples copying cctbx/examples/structure_factor_derivatives_3.py -> build/lib/cctbx/examples copying cctbx/examples/neutron_structure_factors.py -> build/lib/cctbx/examples copying cctbx/examples/tst_g_exp_i_alpha_derivatives.py -> build/lib/cctbx/examples copying cctbx/examples/f_model_example.py -> build/lib/cctbx/examples copying cctbx/examples/find_sys_abs_equiv_space_groups.py -> build/lib/cctbx/examples copying cctbx/examples/miller_common_sets.py -> build/lib/cctbx/examples copying cctbx/examples/change_hand_p31.py -> build/lib/cctbx/examples copying cctbx/examples/cr2o3_primitive_cell.py -> build/lib/cctbx/examples copying cctbx/examples/ccp4_map.py -> build/lib/cctbx/examples copying cctbx/examples/site_symmetry_table.py -> build/lib/cctbx/examples copying cctbx/examples/tst_structure_factor_derivatives_3.py -> build/lib/cctbx/examples copying cctbx/examples/g_exp_i_partial_derivatives.py -> build/lib/cctbx/examples copying cctbx/examples/lebedev_2005_perturbation.py -> build/lib/cctbx/examples copying cctbx/examples/unit_cell_refinement.py -> build/lib/cctbx/examples copying cctbx/examples/analyze_adp.py -> build/lib/cctbx/examples copying cctbx/examples/tst_space_subgroups.py -> build/lib/cctbx/examples copying cctbx/examples/random_f_calc.py -> build/lib/cctbx/examples copying cctbx/examples/tst_structure_factor_derivatives_2.py -> build/lib/cctbx/examples copying cctbx/examples/phase_o_phrenia.py -> build/lib/cctbx/examples copying cctbx/examples/find_distances_using_cpp_objects.py -> build/lib/cctbx/examples copying cctbx/examples/exp_i_alpha_derivatives.py -> build/lib/cctbx/examples copying cctbx/examples/symops_530.py -> build/lib/cctbx/examples copying cctbx/examples/all_axes.py -> build/lib/cctbx/examples copying cctbx/examples/convert_ccp4_symop_lib.py -> build/lib/cctbx/examples copying cctbx/examples/map_skewness.py -> build/lib/cctbx/examples copying cctbx/examples/reduced_cell_two_folds.py -> build/lib/cctbx/examples copying cctbx/examples/location_part.py -> build/lib/cctbx/examples copying cctbx/examples/le_page_1982_vs_lebedev_2005.py -> build/lib/cctbx/examples copying cctbx/examples/quartz_structure.py -> build/lib/cctbx/examples copying cctbx/examples/space_subgroups.py -> build/lib/cctbx/examples copying cctbx/examples/__init__.py -> build/lib/cctbx/examples copying cctbx/examples/steve_collins.py -> build/lib/cctbx/examples copying cctbx/examples/maximum_subgroups.py -> build/lib/cctbx/examples copying cctbx/examples/trigonal_r_vs_tetragonal_i.py -> build/lib/cctbx/examples copying cctbx/examples/tst_exp_i_alpha_derivatives.py -> build/lib/cctbx/examples copying cctbx/examples/structure_factor_derivatives_2.py -> build/lib/cctbx/examples copying cctbx/examples/structure_factor_derivatives.py -> build/lib/cctbx/examples copying cctbx/examples/getting_started.py -> build/lib/cctbx/examples copying cctbx/examples/tst_structure_factor_derivatives.py -> build/lib/cctbx/examples creating build/lib/cctbx/eltbx copying cctbx/eltbx/attenuation_coefficient.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/e_scattering.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/henke.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/van_der_waals_radii.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/distance_based_connectivity.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/read_custom_scattering_dict.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/chemical_elements.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/fp_fdp.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/sasaki.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/icsd_radii.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/wavelengths.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/gaussian_fit.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/__init__.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/tiny_pse.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/covalent_radii.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/neutron.py -> build/lib/cctbx/eltbx copying cctbx/eltbx/formula.py -> build/lib/cctbx/eltbx creating build/lib/cctbx/neutron copying cctbx/neutron/__init__.py -> build/lib/cctbx/neutron creating build/lib/cctbx/miller copying cctbx/miller/tst_reindexing.py -> build/lib/cctbx/miller copying cctbx/miller/reindexing.py -> build/lib/cctbx/miller copying cctbx/miller/tst_map_to_asu_isym.py -> build/lib/cctbx/miller copying cctbx/miller/__init__.py -> build/lib/cctbx/miller copying cctbx/miller/display.py -> build/lib/cctbx/miller creating build/lib/cctbx/crystal copying cctbx/crystal/tst_ext.py -> build/lib/cctbx/crystal copying cctbx/crystal/burzlaff_zimmermann_dewolff.py -> build/lib/cctbx/crystal copying cctbx/crystal/direct_space_asu.py -> build/lib/cctbx/crystal copying cctbx/crystal/tst_distance_based_connectivity.py -> build/lib/cctbx/crystal copying cctbx/crystal/distance_based_connectivity.py -> build/lib/cctbx/crystal copying cctbx/crystal/super_cell.py -> build/lib/cctbx/crystal copying cctbx/crystal/coordination_sequences.py -> build/lib/cctbx/crystal copying cctbx/crystal/tst_super_cell.py -> build/lib/cctbx/crystal copying cctbx/crystal/close_packing.py -> build/lib/cctbx/crystal copying cctbx/crystal/__init__.py -> build/lib/cctbx/crystal copying cctbx/crystal/reindex.py -> build/lib/cctbx/crystal copying cctbx/crystal/find_best_cell.py -> build/lib/cctbx/crystal creating build/lib/cctbx/adp_restraints copying cctbx/adp_restraints/tst_ext.py -> build/lib/cctbx/adp_restraints copying cctbx/adp_restraints/energies.py -> build/lib/cctbx/adp_restraints copying cctbx/adp_restraints/flags.py -> build/lib/cctbx/adp_restraints copying cctbx/adp_restraints/__init__.py -> build/lib/cctbx/adp_restraints creating build/lib/cctbx/array_family copying cctbx/array_family/flex.py -> build/lib/cctbx/array_family copying cctbx/array_family/__init__.py -> build/lib/cctbx/array_family creating build/lib/cctbx/source_generators copying cctbx/source_generators/flex_fwd_h.py -> build/lib/cctbx/source_generators copying cctbx/source_generators/__init__.py -> build/lib/cctbx/source_generators creating build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_process_nonbonded_proxies.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/lbfgs.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_ext.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/manager.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/linking_class.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/standard_cif_links.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/auto_linking_types.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_motif.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/base_geometry.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/process_nonbonded_proxies.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/energies.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/flags.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_proxy_registry.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/tst_angle_derivs.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/__init__.py -> build/lib/cctbx/geometry_restraints copying cctbx/geometry_restraints/distance_least_squares.py -> build/lib/cctbx/geometry_restraints creating build/lib/cctbx/uctbx copying cctbx/uctbx/reduction_base.py -> build/lib/cctbx/uctbx copying cctbx/uctbx/krivy_gruber_1976.py -> build/lib/cctbx/uctbx copying cctbx/uctbx/gruber_1973_table_1.py -> build/lib/cctbx/uctbx copying cctbx/uctbx/gruber_1973.py -> build/lib/cctbx/uctbx copying cctbx/uctbx/__init__.py -> build/lib/cctbx/uctbx creating build/lib/cctbx/merging copying cctbx/merging/brehm_diederichs.py -> build/lib/cctbx/merging copying cctbx/merging/__init__.py -> build/lib/cctbx/merging creating build/lib/cctbx/xray/targets copying cctbx/xray/targets/r1.py -> build/lib/cctbx/xray/targets copying cctbx/xray/targets/tst_shelxl_wght_ls.py -> build/lib/cctbx/xray/targets copying cctbx/xray/targets/tst_r1.py -> build/lib/cctbx/xray/targets copying cctbx/xray/targets/__init__.py -> build/lib/cctbx/xray/targets creating build/lib/cctbx/xray/observations copying cctbx/xray/observations/tst_observations.py -> build/lib/cctbx/xray/observations copying cctbx/xray/observations/__init__.py -> build/lib/cctbx/xray/observations creating build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/from_scatterers_direct_parallel.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/manager.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/from_scatterers.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradient_flags.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/from_scatterers_fft.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/from_scatterers_direct.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradients_base.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/__init__.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/algorithm.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/global_counters.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradients_direct.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/misc.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradients_fft.py -> build/lib/cctbx/xray/structure_factors copying cctbx/xray/structure_factors/gradients.py -> build/lib/cctbx/xray/structure_factors creating build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/short_cuts.py -> build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/check_redundancies.py -> build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py -> build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/reference_table.py -> build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/cut_plane.py -> build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/__init__.py -> build/lib/cctbx/sgtbx/direct_space_asu copying cctbx/sgtbx/direct_space_asu/facet_analysis.py -> build/lib/cctbx/sgtbx/direct_space_asu creating build/lib/cctbx/sgtbx/direct_space_asu/proto copying cctbx/sgtbx/direct_space_asu/proto/tst_asu.py -> build/lib/cctbx/sgtbx/direct_space_asu/proto copying cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py -> build/lib/cctbx/sgtbx/direct_space_asu/proto copying cctbx/sgtbx/direct_space_asu/proto/__init__.py -> build/lib/cctbx/sgtbx/direct_space_asu/proto creating build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_qmap_02.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_example.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_vrm.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/compute_tables.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/bcr.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/qmap.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_vrm2.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_two_atoms.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/__init__.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_adp_refine.py -> build/lib/cctbx/maptbx/bcr copying cctbx/maptbx/bcr/tst_table.py -> build/lib/cctbx/maptbx/bcr creating build/lib/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/jvx.py -> build/lib/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/jv_asu.py -> build/lib/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/guide_to_notation.py -> build/lib/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/jv_index.py -> build/lib/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/__init__.py -> build/lib/cctbx/web/asu_gallery copying cctbx/web/asu_gallery/web_links.py -> build/lib/cctbx/web/asu_gallery creating build/lib/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/u_star_derivatives.py -> build/lib/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/site_derivatives.py -> build/lib/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py -> build/lib/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/sites_derivatives.py -> build/lib/cctbx/examples/structure_factor_calculus copying cctbx/examples/structure_factor_calculus/__init__.py -> build/lib/cctbx/examples/structure_factor_calculus creating build/lib/cctbx/examples/merging copying cctbx/examples/merging/test1.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/test_levenberg_sparse.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/data_utilities.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/sigma_correction.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/task4.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/show_results.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/tst_permutations.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/test_cc_half.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/__init__.py -> build/lib/cctbx/examples/merging copying cctbx/examples/merging/data_subset.py -> build/lib/cctbx/examples/merging creating build/lib/cctbx/examples/merging/samosa copying cctbx/examples/merging/samosa/join.py -> build/lib/cctbx/examples/merging/samosa copying cctbx/examples/merging/samosa/per_lattice_postrefinement.py -> build/lib/cctbx/examples/merging/samosa copying cctbx/examples/merging/samosa/__init__.py -> build/lib/cctbx/examples/merging/samosa copying cctbx/examples/merging/samosa/scale.py -> build/lib/cctbx/examples/merging/samosa creating build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/e_scattering_plots.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_approx.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/kissel_io.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_kissel.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_fits.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/rez_rez_grant.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/combine_fits.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/kissel_fits.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_cross_validation.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/itvc_section61_io.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/create_n_gaussian_raw_cpp.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/__init__.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/format_gaussian_fits.py -> build/lib/cctbx/eltbx/development copying cctbx/eltbx/development/hydrogen_plots.py -> build/lib/cctbx/eltbx/development creating build/lib/cctbx/eltbx/xray_scattering copying cctbx/eltbx/xray_scattering/__init__.py -> build/lib/cctbx/eltbx/xray_scattering creating build/lib/cctbx/source_generators/eltbx copying cctbx/source_generators/eltbx/generate_sasaki_cpp.py -> build/lib/cctbx/source_generators/eltbx copying cctbx/source_generators/eltbx/generate_henke_cpp.py -> build/lib/cctbx/source_generators/eltbx copying cctbx/source_generators/eltbx/__init__.py -> build/lib/cctbx/source_generators/eltbx creating build/lib/cctbx/uctbx/determine_unit_cell copying cctbx/uctbx/determine_unit_cell/__init__.py -> build/lib/cctbx/uctbx/determine_unit_cell creating build/lib/iotbx/fullprof copying iotbx/fullprof/write_pcr.py -> build/lib/iotbx/fullprof copying iotbx/fullprof/read_pcr.py -> build/lib/iotbx/fullprof copying iotbx/fullprof/__init__.py -> build/lib/iotbx/fullprof creating build/lib/iotbx/cif copying iotbx/cif/cod_tools.py -> build/lib/iotbx/cif copying iotbx/cif/model.py -> build/lib/iotbx/cif copying iotbx/cif/restraints.py -> build/lib/iotbx/cif copying iotbx/cif/builders.py -> build/lib/iotbx/cif copying iotbx/cif/geometry.py -> build/lib/iotbx/cif copying iotbx/cif/citations.py -> build/lib/iotbx/cif copying iotbx/cif/__init__.py -> build/lib/iotbx/cif copying iotbx/cif/errors.py -> build/lib/iotbx/cif copying iotbx/cif/restraint_file_merge.py -> build/lib/iotbx/cif copying iotbx/cif/validation.py -> build/lib/iotbx/cif copying iotbx/cif/crystal_symmetry_from_cif.py -> build/lib/iotbx/cif creating build/lib/iotbx/mtz copying iotbx/mtz/tst_unmerged.py -> build/lib/iotbx/mtz copying iotbx/mtz/tst_ext.py -> build/lib/iotbx/mtz copying iotbx/mtz/tst_miller_dict.py -> build/lib/iotbx/mtz copying iotbx/mtz/tst.py -> build/lib/iotbx/mtz copying iotbx/mtz/tst_dano.py -> build/lib/iotbx/mtz copying iotbx/mtz/tst_extract_from_symmetry_lib.py -> build/lib/iotbx/mtz copying iotbx/mtz/extract_from_symmetry_lib.py -> build/lib/iotbx/mtz copying iotbx/mtz/__init__.py -> build/lib/iotbx/mtz copying iotbx/mtz/crystal_symmetry_from_mtz.py -> build/lib/iotbx/mtz creating build/lib/iotbx/dsn6 copying iotbx/dsn6/tst.py -> build/lib/iotbx/dsn6 copying iotbx/dsn6/__init__.py -> build/lib/iotbx/dsn6 creating build/lib/iotbx/scalepack copying iotbx/scalepack/merge.py -> build/lib/iotbx/scalepack copying iotbx/scalepack/no_merge_original_index.py -> build/lib/iotbx/scalepack copying iotbx/scalepack/crystal_symmetry_from_hkl.py -> build/lib/iotbx/scalepack copying iotbx/scalepack/space_group_dictionary.py -> build/lib/iotbx/scalepack copying iotbx/scalepack/tst_merge.py -> build/lib/iotbx/scalepack copying iotbx/scalepack/__init__.py -> build/lib/iotbx/scalepack copying iotbx/scalepack/tst_no_merge_original_index.py -> build/lib/iotbx/scalepack creating build/lib/iotbx/command_line copying iotbx/command_line/crystal_symmetry_from_any.py -> build/lib/iotbx/command_line copying iotbx/command_line/show_distances.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.as_xray_structure.py -> build/lib/iotbx/command_line copying iotbx/command_line/merging_statistics.py -> build/lib/iotbx/command_line copying iotbx/command_line/cns.sdb_reader.py -> build/lib/iotbx/command_line copying iotbx/command_line/r_free_flags_accumulation.py -> build/lib/iotbx/command_line copying iotbx/command_line/sort_atoms.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.hierarchy.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_labels_diff.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.superpose_atoms_by_name.py -> build/lib/iotbx/command_line copying iotbx/command_line/cif.as_miller_arrays.py -> build/lib/iotbx/command_line copying iotbx/command_line/blast_pdb.py -> build/lib/iotbx/command_line copying iotbx/command_line/flip_symmetric_amino_acids.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.box_around_molecule.py -> build/lib/iotbx/command_line copying iotbx/command_line/cif.as_xray_structure.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_labels_comparison.py -> build/lib/iotbx/command_line copying iotbx/command_line/cns.transfer_crystal_symmetry.py -> build/lib/iotbx/command_line copying iotbx/command_line/mtz_as_cif.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.link_as_geometry_restraints_edits.py -> build/lib/iotbx/command_line copying iotbx/command_line/reflection_file_reader.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.join_fragment_files.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.insert_scale_records.py -> build/lib/iotbx/command_line copying iotbx/command_line/mtrix_reconstruction.py -> build/lib/iotbx/command_line copying iotbx/command_line/build_phil_cache.py -> build/lib/iotbx/command_line copying iotbx/command_line/get_pubmed_citation.py -> build/lib/iotbx/command_line copying iotbx/command_line/cbf_read.py -> build/lib/iotbx/command_line copying iotbx/command_line/show_systematic_absences.py -> build/lib/iotbx/command_line copying iotbx/command_line/unique_with_biomt.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_split_models.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_as_fasta.py -> build/lib/iotbx/command_line copying iotbx/command_line/dano_as_amplitudes.py -> build/lib/iotbx/command_line copying iotbx/command_line/csv_as_mtz.py -> build/lib/iotbx/command_line copying iotbx/command_line/export_scalepack_unmerged.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_show_connectivity.py -> build/lib/iotbx/command_line copying iotbx/command_line/cif_as_pdb.py -> build/lib/iotbx/command_line copying iotbx/command_line/biomt_reconstruction.py -> build/lib/iotbx/command_line copying iotbx/command_line/reflection_file_editor.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_cif_conversion.py -> build/lib/iotbx/command_line copying iotbx/command_line/emma.py -> build/lib/iotbx/command_line copying iotbx/command_line/dtrek.to_cns.py -> build/lib/iotbx/command_line copying iotbx/command_line/reflection_statistics.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_get_citation.py -> build/lib/iotbx/command_line copying iotbx/command_line/explore_metric_symmetry.py -> build/lib/iotbx/command_line copying iotbx/command_line/lattice_symmetry.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_add_conformations.py -> build/lib/iotbx/command_line copying iotbx/command_line/r_free_flags_as_cns.py -> build/lib/iotbx/command_line copying iotbx/command_line/french_wilson.py -> build/lib/iotbx/command_line copying iotbx/command_line/file_reader.py -> build/lib/iotbx/command_line copying iotbx/command_line/shelx.dump_as_python.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.b_factor_stats.py -> build/lib/iotbx/command_line copying iotbx/command_line/r_free_flags_completion_simple.py -> build/lib/iotbx/command_line copying iotbx/command_line/shelx.as_xray_structure.py -> build/lib/iotbx/command_line copying iotbx/command_line/mtz.dump.py -> build/lib/iotbx/command_line copying iotbx/command_line/simple_map_coefficients.py -> build/lib/iotbx/command_line copying iotbx/command_line/phil.py -> build/lib/iotbx/command_line copying iotbx/command_line/patterson_map.py -> build/lib/iotbx/command_line copying iotbx/command_line/poscar_as_xray_structure.py -> build/lib/iotbx/command_line copying iotbx/command_line/shelx.as_cif.py -> build/lib/iotbx/command_line copying iotbx/command_line/__init__.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.superpose_centers_of_mass.py -> build/lib/iotbx/command_line copying iotbx/command_line/split_data_cif.py -> build/lib/iotbx/command_line copying iotbx/command_line/cif.validate.py -> build/lib/iotbx/command_line copying iotbx/command_line/symmetry_search.py -> build/lib/iotbx/command_line copying iotbx/command_line/reindex.py -> build/lib/iotbx/command_line copying iotbx/command_line/reflection_file_converter.py -> build/lib/iotbx/command_line copying iotbx/command_line/xplor.map.show_summary.py -> build/lib/iotbx/command_line copying iotbx/command_line/cns.reflection_reader.py -> build/lib/iotbx/command_line copying iotbx/command_line/distance_least_squares.py -> build/lib/iotbx/command_line copying iotbx/command_line/effective_resolution.py -> build/lib/iotbx/command_line copying iotbx/command_line/cns_as_mtz.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_as_cif.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb.print_sequence.py -> build/lib/iotbx/command_line copying iotbx/command_line/detector_image_as_png.py -> build/lib/iotbx/command_line copying iotbx/command_line/pdb_remediator.py -> build/lib/iotbx/command_line creating build/lib/iotbx/file_io copying iotbx/file_io/reader.py -> build/lib/iotbx/file_io copying iotbx/file_io/_maps.py -> build/lib/iotbx/file_io copying iotbx/file_io/detection.py -> build/lib/iotbx/file_io copying iotbx/file_io/text_detection.py -> build/lib/iotbx/file_io copying iotbx/file_io/__init__.py -> build/lib/iotbx/file_io creating build/lib/iotbx/data_manager copying iotbx/data_manager/yaml.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/sequence.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/model.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/json.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/real_map.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/ncs_spec.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/common.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/miller_array.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/map_coefficients.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/restraint.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/phil.py -> build/lib/iotbx/data_manager copying iotbx/data_manager/__init__.py -> build/lib/iotbx/data_manager creating build/lib/iotbx/regression copying iotbx/regression/tst_all_chain_ids.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_manager_wrapping.py -> build/lib/iotbx/regression copying iotbx/regression/tst_fetch.py -> build/lib/iotbx/regression copying iotbx/regression/tst_simple_parser.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_long_resname_2.py -> build/lib/iotbx/regression copying iotbx/regression/tst_file_reader.py -> build/lib/iotbx/regression copying iotbx/regression/tst_cli_parser.py -> build/lib/iotbx/regression copying iotbx/regression/tst_show_systematic_absences.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py -> build/lib/iotbx/regression copying iotbx/regression/tst_pdb_link_records.py -> build/lib/iotbx/regression copying iotbx/regression/tst_miller_sort_asu.py -> build/lib/iotbx/regression copying iotbx/regression/tst_bioinformatics.py -> build/lib/iotbx/regression copying iotbx/regression/tst_extract_xtal_data.py -> build/lib/iotbx/regression copying iotbx/regression/tst_poscar.py -> build/lib/iotbx/regression copying iotbx/regression/tst_reindex.py -> build/lib/iotbx/regression copying iotbx/regression/tst_lattice_symmetry.py -> build/lib/iotbx/regression copying iotbx/regression/tst_cif_as_pdb_1atom.py -> build/lib/iotbx/regression copying iotbx/regression/tst_csv_utils.py -> build/lib/iotbx/regression copying iotbx/regression/tst_crystal_symmetry_from_any.py -> build/lib/iotbx/regression copying iotbx/regression/tst_pdbx_mmcif_tutorial.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_manager.py -> build/lib/iotbx/regression copying iotbx/regression/tst_restraints_merge.py -> build/lib/iotbx/regression copying iotbx/regression/tst_split_models.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_tls_from_map_8.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_tools.py -> build/lib/iotbx/regression copying iotbx/regression/tst_mmcif_input.py -> build/lib/iotbx/regression copying iotbx/regression/tst_cif_1.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_model_sharpening_5.py -> build/lib/iotbx/regression copying iotbx/regression/tst_generate_n_char_string.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py -> build/lib/iotbx/regression copying iotbx/regression/tst_merging_statistics.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_long_resname_4.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_manager_2.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_long_resname_3.py -> build/lib/iotbx/regression copying iotbx/regression/tst_pdb_cif_inputs.py -> build/lib/iotbx/regression copying iotbx/regression/tst_xray_scale.py -> build/lib/iotbx/regression copying iotbx/regression/tst_simple_map_coefficients.py -> build/lib/iotbx/regression copying iotbx/regression/tst_reflection_statistics.py -> build/lib/iotbx/regression copying iotbx/regression/tst_pdb_as_cif.py -> build/lib/iotbx/regression copying iotbx/regression/tst_pdb_cif_cells.py -> build/lib/iotbx/regression copying iotbx/regression/tst_mmcif_segids.py -> build/lib/iotbx/regression copying iotbx/regression/tst_pdb_as_fasta.py -> build/lib/iotbx/regression copying iotbx/regression/tst_export_scalepack_unmerged.py -> build/lib/iotbx/regression copying iotbx/regression/tst_symmetry.py -> build/lib/iotbx/regression copying iotbx/regression/tst_mmcif_multimodel.py -> build/lib/iotbx/regression copying iotbx/regression/tst_atom_selections_10k.py -> build/lib/iotbx/regression copying iotbx/regression/tst_sort_atoms.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_cif.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_forward_compatible_pdb.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_pdb_v3.py -> build/lib/iotbx/regression copying iotbx/regression/tst_mmcif_to_from_hierarchy.py -> build/lib/iotbx/regression copying iotbx/regression/tst_add_conformations.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_id_str.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_occupancies_rounding.py -> build/lib/iotbx/regression copying iotbx/regression/tst_box_around_molecule.py -> build/lib/iotbx/regression copying iotbx/regression/tst_split_data_cif.py -> build/lib/iotbx/regression copying iotbx/regression/tst_reflection_file_editor.py -> build/lib/iotbx/regression copying iotbx/regression/tst_phil.py -> build/lib/iotbx/regression copying iotbx/regression/tst_wildcard.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_long_chain_ids_1.py -> build/lib/iotbx/regression copying iotbx/regression/tst_file_io.py -> build/lib/iotbx/regression copying iotbx/regression/tst_mrc_io.py -> build/lib/iotbx/regression copying iotbx/regression/tst_patterson.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_local_resolution_10.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_external_sharpening_7.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_long_resname_1.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_call_consistency.py -> build/lib/iotbx/regression copying iotbx/regression/tst_data_manager.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_3.py -> build/lib/iotbx/regression copying iotbx/regression/__init__.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_4.py -> build/lib/iotbx/regression copying iotbx/regression/tst_group_rounding.py -> build/lib/iotbx/regression copying iotbx/regression/tst_examples.py -> build/lib/iotbx/regression copying iotbx/regression/tst_map_model_manager_2.py -> build/lib/iotbx/regression copying iotbx/regression/tst_reflection_file_utils.py -> build/lib/iotbx/regression copying iotbx/regression/utils.py -> build/lib/iotbx/regression copying iotbx/regression/tst_phases.py -> build/lib/iotbx/regression copying iotbx/regression/tst_reflection_file_reader.py -> build/lib/iotbx/regression copying iotbx/regression/tst_text_detection.py -> build/lib/iotbx/regression copying iotbx/regression/tst_mtz_as_cif.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_altlocs.py -> build/lib/iotbx/regression copying iotbx/regression/tst_data_plots.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_copy_select.py -> build/lib/iotbx/regression copying iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py -> build/lib/iotbx/regression copying iotbx/regression/tst_selected_hierarchy_flip.py -> build/lib/iotbx/regression creating build/lib/iotbx/pdb copying iotbx/pdb/tst_mmcif.py -> build/lib/iotbx/pdb copying iotbx/pdb/nucleic_acid_codes.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_hierarchy_atom_sort.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_ext.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py -> build/lib/iotbx/pdb copying iotbx/pdb/crystal_symmetry_from_pdb.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_atom_selection_string.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_read_mtrix_records_from_cif.py -> build/lib/iotbx/pdb copying iotbx/pdb/fetch.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_hierarchy_flip_symmetric_2.py -> build/lib/iotbx/pdb copying iotbx/pdb/rcsb.py -> build/lib/iotbx/pdb copying iotbx/pdb/extract_rfactors_resolutions_sigma.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_secondary_structure_2.py -> build/lib/iotbx/pdb copying iotbx/pdb/amino_acid_codes.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_rna_dna_atom_names.py -> build/lib/iotbx/pdb copying iotbx/pdb/atom_name_interpretation.py -> build/lib/iotbx/pdb copying iotbx/pdb/experiment_type.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_atom_name_interpretation.py -> build/lib/iotbx/pdb copying iotbx/pdb/mmcif.py -> build/lib/iotbx/pdb copying iotbx/pdb/hybrid_36.py -> build/lib/iotbx/pdb copying iotbx/pdb/modified_aa_names.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_input_pickling.py -> build/lib/iotbx/pdb copying iotbx/pdb/records.py -> build/lib/iotbx/pdb copying iotbx/pdb/remark_290_interpretation.py -> build/lib/iotbx/pdb copying iotbx/pdb/secondary_structure.py -> build/lib/iotbx/pdb copying iotbx/pdb/aa_utils.py -> build/lib/iotbx/pdb copying iotbx/pdb/cryst1_interpretation.py -> build/lib/iotbx/pdb copying iotbx/pdb/web_service_api.py -> build/lib/iotbx/pdb copying iotbx/pdb/download.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_hierarchy.py -> build/lib/iotbx/pdb copying iotbx/pdb/xray_structure.py -> build/lib/iotbx/pdb copying iotbx/pdb/rna_dna_detection.py -> build/lib/iotbx/pdb copying iotbx/pdb/misc_records_output.py -> build/lib/iotbx/pdb copying iotbx/pdb/remark_2_interpretation.py -> build/lib/iotbx/pdb copying iotbx/pdb/forward_compatible_pdb_cif_conversion.py -> build/lib/iotbx/pdb copying iotbx/pdb/modified_rna_dna_names.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_tls.py -> build/lib/iotbx/pdb copying iotbx/pdb/atom_selection.py -> build/lib/iotbx/pdb copying iotbx/pdb/remark_3_interpretation.py -> build/lib/iotbx/pdb copying iotbx/pdb/__init__.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_atom_selection.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_mmcif_hierarchy.py -> build/lib/iotbx/pdb copying iotbx/pdb/pdbe.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_secondary_structure.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_utils.py -> build/lib/iotbx/pdb copying iotbx/pdb/pdb_v3_cif_conversion.py -> build/lib/iotbx/pdb copying iotbx/pdb/utils.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_pdb.py -> build/lib/iotbx/pdb copying iotbx/pdb/hierarchy.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_hierarchy_flip_symmetric.py -> build/lib/iotbx/pdb copying iotbx/pdb/tst_mmcif_hierarchy_2.py -> build/lib/iotbx/pdb creating build/lib/iotbx/xds copying iotbx/xds/xds_cbf.py -> build/lib/iotbx/xds copying iotbx/xds/gain_cbf.py -> build/lib/iotbx/xds copying iotbx/xds/xds_inp.py -> build/lib/iotbx/xds copying iotbx/xds/xparm.py -> build/lib/iotbx/xds copying iotbx/xds/integrate_hkl.py -> build/lib/iotbx/xds copying iotbx/xds/crystal_symmetry_from_hkl.py -> build/lib/iotbx/xds copying iotbx/xds/spot_xds.py -> build/lib/iotbx/xds copying iotbx/xds/read_ascii.py -> build/lib/iotbx/xds copying iotbx/xds/geometry.py -> build/lib/iotbx/xds copying iotbx/xds/blank_cbf.py -> build/lib/iotbx/xds copying iotbx/xds/__init__.py -> build/lib/iotbx/xds copying iotbx/xds/correction.py -> build/lib/iotbx/xds creating build/lib/iotbx/detectors copying iotbx/detectors/raxis_nonsquare.py -> build/lib/iotbx/detectors copying iotbx/detectors/tst_py_cbf.py -> build/lib/iotbx/detectors copying iotbx/detectors/tst_detectors.py -> build/lib/iotbx/detectors copying iotbx/detectors/generic_detector.py -> build/lib/iotbx/detectors copying iotbx/detectors/pilatus_minicbf.py -> build/lib/iotbx/detectors copying iotbx/detectors/edf.py -> build/lib/iotbx/detectors copying iotbx/detectors/cspad_detector_formats.py -> build/lib/iotbx/detectors copying iotbx/detectors/image_from_http_request.py -> build/lib/iotbx/detectors copying iotbx/detectors/raxis.py -> build/lib/iotbx/detectors copying iotbx/detectors/raxisbase.py -> build/lib/iotbx/detectors copying iotbx/detectors/bruker.py -> build/lib/iotbx/detectors copying iotbx/detectors/adsc.py -> build/lib/iotbx/detectors copying iotbx/detectors/npy.py -> build/lib/iotbx/detectors copying iotbx/detectors/active_area_filter.py -> build/lib/iotbx/detectors copying iotbx/detectors/url_support.py -> build/lib/iotbx/detectors copying iotbx/detectors/macscience.py -> build/lib/iotbx/detectors copying iotbx/detectors/test_raxis2.py -> build/lib/iotbx/detectors copying iotbx/detectors/detectorbase.py -> build/lib/iotbx/detectors copying iotbx/detectors/beam_center_convention.py -> build/lib/iotbx/detectors copying iotbx/detectors/noir.py -> build/lib/iotbx/detectors copying iotbx/detectors/tst_adsc.py -> build/lib/iotbx/detectors copying iotbx/detectors/mar.py -> build/lib/iotbx/detectors copying iotbx/detectors/tst_debug_write.py -> build/lib/iotbx/detectors copying iotbx/detectors/saturn.py -> build/lib/iotbx/detectors copying iotbx/detectors/adsc_module.py -> build/lib/iotbx/detectors copying iotbx/detectors/__init__.py -> build/lib/iotbx/detectors copying iotbx/detectors/eiger_minicbf.py -> build/lib/iotbx/detectors copying iotbx/detectors/eiger.py -> build/lib/iotbx/detectors copying iotbx/detectors/tst_cbf_comp_read_meth.py -> build/lib/iotbx/detectors copying iotbx/detectors/dtrek.py -> build/lib/iotbx/detectors copying iotbx/detectors/cbf.py -> build/lib/iotbx/detectors copying iotbx/detectors/hamamatsu.py -> build/lib/iotbx/detectors copying iotbx/detectors/pilatus_slice.py -> build/lib/iotbx/detectors copying iotbx/detectors/marIP.py -> build/lib/iotbx/detectors copying iotbx/detectors/test_mar.py -> build/lib/iotbx/detectors copying iotbx/detectors/adsc_minicbf.py -> build/lib/iotbx/detectors creating build/lib/iotbx/PrettyPrint copying iotbx/PrettyPrint/tables.py -> build/lib/iotbx/PrettyPrint copying iotbx/PrettyPrint/__init__.py -> build/lib/iotbx/PrettyPrint creating build/lib/iotbx/kriber copying iotbx/kriber/strudat.py -> build/lib/iotbx/kriber copying iotbx/kriber/tst_strudat.py -> build/lib/iotbx/kriber copying iotbx/kriber/__init__.py -> build/lib/iotbx/kriber creating build/lib/iotbx/ccp4_map copying iotbx/ccp4_map/tst.py -> build/lib/iotbx/ccp4_map copying iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py -> build/lib/iotbx/ccp4_map copying iotbx/ccp4_map/__init__.py -> build/lib/iotbx/ccp4_map creating build/lib/iotbx/xplor copying iotbx/xplor/tst_xplormap.py -> build/lib/iotbx/xplor copying iotbx/xplor/ext.py -> build/lib/iotbx/xplor copying iotbx/xplor/map.py -> build/lib/iotbx/xplor copying iotbx/xplor/crystal_symmetry_from_map.py -> build/lib/iotbx/xplor copying iotbx/xplor/__init__.py -> build/lib/iotbx/xplor creating build/lib/iotbx/examples copying iotbx/examples/libtbx_phil_examples.py -> build/lib/iotbx/examples copying iotbx/examples/prepare_model_for_rsr.py -> build/lib/iotbx/examples copying iotbx/examples/pdb_shake.py -> build/lib/iotbx/examples copying iotbx/examples/recalculate_phenix_refine_r_factors.py -> build/lib/iotbx/examples copying iotbx/examples/direct_methods_light.py -> build/lib/iotbx/examples copying iotbx/examples/pdb_split_chains.py -> build/lib/iotbx/examples copying iotbx/examples/pdbx_mmcif_tutorial.py -> build/lib/iotbx/examples copying iotbx/examples/tst_mtz_free_flipper.py -> build/lib/iotbx/examples copying iotbx/examples/mtz_convert_free_to_work.py -> build/lib/iotbx/examples copying iotbx/examples/pdb_tardy_conf_sampling_simple.py -> build/lib/iotbx/examples copying iotbx/examples/mtz_free_flipper.py -> build/lib/iotbx/examples copying iotbx/examples/pdb_symmetry_copies.py -> build/lib/iotbx/examples copying iotbx/examples/pdb_hierarchy.py -> build/lib/iotbx/examples copying iotbx/examples/__init__.py -> build/lib/iotbx/examples copying iotbx/examples/shelx_latt_sym_to_space_group_symbol.py -> build/lib/iotbx/examples copying iotbx/examples/pdb_to_map_simple.py -> build/lib/iotbx/examples creating build/lib/iotbx/dtrek copying iotbx/dtrek/reflnlist_reader.py -> build/lib/iotbx/dtrek copying iotbx/dtrek/__init__.py -> build/lib/iotbx/dtrek copying iotbx/dtrek/crystal_symmetry_from_ref.py -> build/lib/iotbx/dtrek copying iotbx/dtrek/dtrek_symmetry_dict.py -> build/lib/iotbx/dtrek creating build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/ebi_wu_blast_xml.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/pdb_info.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/homologues.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/xmlbuild.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/ncbi_blast_xml.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/structure.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/pubmed.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/alignment_as_hsearch.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/local_blast.py -> build/lib/iotbx/bioinformatics copying iotbx/bioinformatics/__init__.py -> build/lib/iotbx/bioinformatics creating build/lib/iotbx/ncs copying iotbx/ncs/__init__.py -> build/lib/iotbx/ncs creating build/lib/iotbx/cns copying iotbx/cns/crystal_symmetry_from_inp.py -> build/lib/iotbx/cns copying iotbx/cns/crystal_symmetry_from_sdb.py -> build/lib/iotbx/cns copying iotbx/cns/crystal_symmetry_utils.py -> build/lib/iotbx/cns copying iotbx/cns/sdb_reader.py -> build/lib/iotbx/cns copying iotbx/cns/sdb_writer.py -> build/lib/iotbx/cns copying iotbx/cns/index_fobs_sigma_reader.py -> build/lib/iotbx/cns copying iotbx/cns/miller_array.py -> build/lib/iotbx/cns copying iotbx/cns/reflection_reader.py -> build/lib/iotbx/cns copying iotbx/cns/tst_cns.py -> build/lib/iotbx/cns copying iotbx/cns/space_group_symbols.py -> build/lib/iotbx/cns copying iotbx/cns/xray_structure.py -> build/lib/iotbx/cns copying iotbx/cns/__init__.py -> build/lib/iotbx/cns copying iotbx/cns/pdb_remarks.py -> build/lib/iotbx/cns creating build/lib/iotbx/programs copying iotbx/programs/unique_with_biomt.py -> build/lib/iotbx/programs copying iotbx/programs/box_around_molecule.py -> build/lib/iotbx/programs copying iotbx/programs/__init__.py -> build/lib/iotbx/programs copying iotbx/programs/split_data_cif.py -> build/lib/iotbx/programs creating build/lib/iotbx/solve copying iotbx/solve/crystal_symmetry_from_inp.py -> build/lib/iotbx/solve copying iotbx/solve/fpfm_reader.py -> build/lib/iotbx/solve copying iotbx/solve/__init__.py -> build/lib/iotbx/solve creating build/lib/iotbx/shelx copying iotbx/shelx/parsers.py -> build/lib/iotbx/shelx copying iotbx/shelx/hklf.py -> build/lib/iotbx/shelx copying iotbx/shelx/tst_lex_parse_build.py -> build/lib/iotbx/shelx copying iotbx/shelx/tokens.py -> build/lib/iotbx/shelx copying iotbx/shelx/fcf.py -> build/lib/iotbx/shelx copying iotbx/shelx/tst_hklf.py -> build/lib/iotbx/shelx copying iotbx/shelx/writer.py -> build/lib/iotbx/shelx copying iotbx/shelx/tst_fvar_encoding.py -> build/lib/iotbx/shelx copying iotbx/shelx/lexer.py -> build/lib/iotbx/shelx copying iotbx/shelx/tst_writer.py -> build/lib/iotbx/shelx copying iotbx/shelx/write_ins.py -> build/lib/iotbx/shelx copying iotbx/shelx/__init__.py -> build/lib/iotbx/shelx copying iotbx/shelx/errors.py -> build/lib/iotbx/shelx copying iotbx/shelx/crystal_symmetry_from_ins.py -> build/lib/iotbx/shelx copying iotbx/shelx/fvar_encoding.py -> build/lib/iotbx/shelx creating build/lib/iotbx/mrcfile copying iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py -> build/lib/iotbx/mrcfile copying iotbx/mrcfile/__init__.py -> build/lib/iotbx/mrcfile creating build/lib/iotbx/gui_tools copying iotbx/gui_tools/tst.py -> build/lib/iotbx/gui_tools copying iotbx/gui_tools/cif_conversions.py -> build/lib/iotbx/gui_tools copying iotbx/gui_tools/__init__.py -> build/lib/iotbx/gui_tools copying iotbx/gui_tools/import_data_and_flags.py -> build/lib/iotbx/gui_tools copying iotbx/gui_tools/models.py -> build/lib/iotbx/gui_tools copying iotbx/gui_tools/reflections.py -> build/lib/iotbx/gui_tools creating build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_search_shortcut_1.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_without_validation.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_input.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_reordered_chains.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_groups_preprocessing.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_search_broken_chain.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_user_selections.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/__init__.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_input_preserves_iseqs.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py -> build/lib/iotbx/regression/ncs copying iotbx/regression/ncs/tst_ncs_search_ligs.py -> build/lib/iotbx/regression/ncs creating build/lib/iotbx/pdb/remediation copying iotbx/pdb/remediation/remediator.py -> build/lib/iotbx/pdb/remediation copying iotbx/pdb/remediation/__init__.py -> build/lib/iotbx/pdb/remediation copying iotbx/pdb/remediation/tst_remediator.py -> build/lib/iotbx/pdb/remediation creating build/lib/iotbx/detectors/context copying iotbx/detectors/context/spot_xy_convention.py -> build/lib/iotbx/detectors/context copying iotbx/detectors/context/config_detector.py -> build/lib/iotbx/detectors/context copying iotbx/detectors/context/camera_convention.py -> build/lib/iotbx/detectors/context copying iotbx/detectors/context/endstation.py -> build/lib/iotbx/detectors/context copying iotbx/detectors/context/endstation_max_iv_trial.py -> build/lib/iotbx/detectors/context copying iotbx/detectors/context/__init__.py -> build/lib/iotbx/detectors/context creating build/lib/iotbx/detectors/util copying iotbx/detectors/util/filters.py -> build/lib/iotbx/detectors/util copying iotbx/detectors/util/__init__.py -> build/lib/iotbx/detectors/util creating build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/tst.py -> build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py -> build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/v3_better.py -> build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/v2_simple.py -> build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/__init__.py -> build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py -> build/lib/iotbx/examples/pdb_truncate_to_ala copying iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py -> build/lib/iotbx/examples/pdb_truncate_to_ala creating build/lib/annlib_adaptbx/annlib_adaptbx copying annlib_adaptbx/annlib_adaptbx/self_match.py -> build/lib/annlib_adaptbx/annlib_adaptbx copying annlib_adaptbx/annlib_adaptbx/sample.py -> build/lib/annlib_adaptbx/annlib_adaptbx copying annlib_adaptbx/annlib_adaptbx/__init__.py -> build/lib/annlib_adaptbx/annlib_adaptbx creating build/lib/annlib_adaptbx/source_generators copying annlib_adaptbx/source_generators/generate_all.py -> build/lib/annlib_adaptbx/source_generators copying annlib_adaptbx/source_generators/__init__.py -> build/lib/annlib_adaptbx/source_generators creating build/lib/spotfinder/applications copying spotfinder/applications/practical_heuristics.py -> build/lib/spotfinder/applications copying spotfinder/applications/stats_distl.py -> build/lib/spotfinder/applications copying spotfinder/applications/image_viewer.py -> build/lib/spotfinder/applications copying spotfinder/applications/__init__.py -> build/lib/spotfinder/applications copying spotfinder/applications/wrappers.py -> build/lib/spotfinder/applications copying spotfinder/applications/signal_strength.py -> build/lib/spotfinder/applications creating build/lib/spotfinder/servers copying spotfinder/servers/specific_client_example.py -> build/lib/spotfinder/servers copying spotfinder/servers/general_client_example.py -> build/lib/spotfinder/servers copying spotfinder/servers/thin_client.py -> build/lib/spotfinder/servers copying spotfinder/servers/spotfinder_server_read_file.py -> build/lib/spotfinder/servers copying spotfinder/servers/apache.py -> build/lib/spotfinder/servers copying spotfinder/servers/bcsb_client_example.py -> build/lib/spotfinder/servers copying spotfinder/servers/multipart_encoder.py -> build/lib/spotfinder/servers copying spotfinder/servers/apache_bcsb.py -> build/lib/spotfinder/servers copying spotfinder/servers/mp_spotfinder_server_is_alive.py -> build/lib/spotfinder/servers copying spotfinder/servers/mp_spotfinder_server_read_file.py -> build/lib/spotfinder/servers copying spotfinder/servers/pilatus_client.py -> build/lib/spotfinder/servers copying spotfinder/servers/adsc_client.py -> build/lib/spotfinder/servers copying spotfinder/servers/spotfinder_server_client_push.py -> build/lib/spotfinder/servers copying spotfinder/servers/__init__.py -> build/lib/spotfinder/servers copying spotfinder/servers/apache_utils.py -> build/lib/spotfinder/servers copying spotfinder/servers/apache_dials.py -> build/lib/spotfinder/servers creating build/lib/spotfinder/command_line copying spotfinder/command_line/thin_client.py -> build/lib/spotfinder/command_line copying spotfinder/command_line/image_viewer.py -> build/lib/spotfinder/command_line copying spotfinder/command_line/mp_spotfinder_server_read_file.py -> build/lib/spotfinder/command_line copying spotfinder/command_line/find_active_area.py -> build/lib/spotfinder/command_line copying spotfinder/command_line/__init__.py -> build/lib/spotfinder/command_line copying spotfinder/command_line/sweep_strength.py -> build/lib/spotfinder/command_line copying spotfinder/command_line/signal_strength.py -> build/lib/spotfinder/command_line creating build/lib/spotfinder/dxtbx_toolbox copying spotfinder/dxtbx_toolbox/practical_heuristics.py -> build/lib/spotfinder/dxtbx_toolbox copying spotfinder/dxtbx_toolbox/__init__.py -> build/lib/spotfinder/dxtbx_toolbox creating build/lib/spotfinder/core_toolbox copying spotfinder/core_toolbox/close_spots_detail.py -> build/lib/spotfinder/core_toolbox copying spotfinder/core_toolbox/__init__.py -> build/lib/spotfinder/core_toolbox creating build/lib/spotfinder/diffraction copying spotfinder/diffraction/imagefiles.py -> build/lib/spotfinder/diffraction copying spotfinder/diffraction/geometry.py -> build/lib/spotfinder/diffraction copying spotfinder/diffraction/__init__.py -> build/lib/spotfinder/diffraction creating build/lib/spotfinder/math_support copying spotfinder/math_support/sphere_formulae.py -> build/lib/spotfinder/math_support copying spotfinder/math_support/__init__.py -> build/lib/spotfinder/math_support creating build/lib/spotfinder/array_family copying spotfinder/array_family/flex.py -> build/lib/spotfinder/array_family copying spotfinder/array_family/__init__.py -> build/lib/spotfinder/array_family creating build/lib/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/method2_resolution.py -> build/lib/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/ice2.py -> build/lib/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/spotreporter.py -> build/lib/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/__init__.py -> build/lib/spotfinder/applications/heuristic_tbx copying spotfinder/applications/heuristic_tbx/ice_nztt.py -> build/lib/spotfinder/applications/heuristic_tbx creating build/lib/spotfinder/applications/xfel copying spotfinder/applications/xfel/cxi_run3.py -> build/lib/spotfinder/applications/xfel copying spotfinder/applications/xfel/cxi_phil.py -> build/lib/spotfinder/applications/xfel copying spotfinder/applications/xfel/correction_vector_plot.py -> build/lib/spotfinder/applications/xfel copying spotfinder/applications/xfel/__init__.py -> build/lib/spotfinder/applications/xfel creating build/lib/rstbx/apps copying rstbx/apps/spot_markup.py -> build/lib/rstbx/apps copying rstbx/apps/dual_resolution_helpers.py -> build/lib/rstbx/apps copying rstbx/apps/__init__.py -> build/lib/rstbx/apps copying rstbx/apps/slip_helpers.py -> build/lib/rstbx/apps creating build/lib/rstbx/simulation copying rstbx/simulation/constants.py -> build/lib/rstbx/simulation copying rstbx/simulation/sim_pdf.py -> build/lib/rstbx/simulation copying rstbx/simulation/__init__.py -> build/lib/rstbx/simulation copying rstbx/simulation/tst_xfel1_simple.py -> build/lib/rstbx/simulation copying rstbx/simulation/sim_utils.py -> build/lib/rstbx/simulation creating build/lib/rstbx/phil copying rstbx/phil/scope.py -> build/lib/rstbx/phil copying rstbx/phil/phil_preferences.py -> build/lib/rstbx/phil copying rstbx/phil/__init__.py -> build/lib/rstbx/phil copying rstbx/phil/preferences.py -> build/lib/rstbx/phil creating build/lib/rstbx/outlier_spots copying rstbx/outlier_spots/fit_distribution.py -> build/lib/rstbx/outlier_spots copying rstbx/outlier_spots/__init__.py -> build/lib/rstbx/outlier_spots creating build/lib/rstbx/command_line copying rstbx/command_line/example_viewer.py -> build/lib/rstbx/command_line copying rstbx/command_line/index.py -> build/lib/rstbx/command_line copying rstbx/command_line/simage.explore_completeness.py -> build/lib/rstbx/command_line copying rstbx/command_line/simage.create.py -> build/lib/rstbx/command_line copying rstbx/command_line/slip_viewer.py -> build/lib/rstbx/command_line copying rstbx/command_line/viewer.py -> build/lib/rstbx/command_line copying rstbx/command_line/__init__.py -> build/lib/rstbx/command_line copying rstbx/command_line/simage.solver.py -> build/lib/rstbx/command_line copying rstbx/command_line/simage.wx_display.py -> build/lib/rstbx/command_line creating build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/ring_frame.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/pyslip.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/frame.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/example_frame_plugin_hidden.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/tile_generation.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/score_frame.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/slip_viewer_image_factory.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/uc_frame.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/__init__.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/slip_display.py -> build/lib/rstbx/slip_viewer copying rstbx/slip_viewer/calibration_frame.py -> build/lib/rstbx/slip_viewer creating build/lib/rstbx/detectors copying rstbx/detectors/silicon.py -> build/lib/rstbx/detectors copying rstbx/detectors/__init__.py -> build/lib/rstbx/detectors creating build/lib/rstbx/symmetry copying rstbx/symmetry/sgtbx_adaptor.py -> build/lib/rstbx/symmetry copying rstbx/symmetry/__init__.py -> build/lib/rstbx/symmetry copying rstbx/symmetry/subgroup.py -> build/lib/rstbx/symmetry creating build/lib/rstbx/bpcx copying rstbx/bpcx/uc1_2_validate.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/uc1_2_positions.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/uc1_2a.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/uc1_2_positions_idx.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/compare_mosflm_xds.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/uc1_2.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/__init__.py -> build/lib/rstbx/bpcx copying rstbx/bpcx/ersatz_misset.py -> build/lib/rstbx/bpcx creating build/lib/rstbx/dps_core copying rstbx/dps_core/cell_assessment.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/tst_iotbx_converter.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/basis_choice.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/lepage.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/zuoreduction.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/constrainment.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/__init__.py -> build/lib/rstbx/dps_core copying rstbx/dps_core/sampling.py -> build/lib/rstbx/dps_core creating build/lib/rstbx/indexing_api copying rstbx/indexing_api/outlier_procedure.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/lattice.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/nearest_neighbor.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/force_cell.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/basis_choice.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/tools.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/test_dps.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/outlier_detection.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/__init__.py -> build/lib/rstbx/indexing_api copying rstbx/indexing_api/sampling.py -> build/lib/rstbx/indexing_api creating build/lib/rstbx/indexing copying rstbx/indexing/tst_auto_monoscan.py -> build/lib/rstbx/indexing copying rstbx/indexing/do_index.py -> build/lib/rstbx/indexing copying rstbx/indexing/__init__.py -> build/lib/rstbx/indexing copying rstbx/indexing/tst_dataset1.py -> build/lib/rstbx/indexing creating build/lib/rstbx/new_horizons copying rstbx/new_horizons/index.py -> build/lib/rstbx/new_horizons copying rstbx/new_horizons/speckfinder.py -> build/lib/rstbx/new_horizons copying rstbx/new_horizons/stats_index.py -> build/lib/rstbx/new_horizons copying rstbx/new_horizons/spot_shape.py -> build/lib/rstbx/new_horizons copying rstbx/new_horizons/pixel_spread.py -> build/lib/rstbx/new_horizons copying rstbx/new_horizons/__init__.py -> build/lib/rstbx/new_horizons copying rstbx/new_horizons/oscillation_shots.py -> build/lib/rstbx/new_horizons creating build/lib/rstbx/diffraction copying rstbx/diffraction/tst_ewald_sphere.py -> build/lib/rstbx/diffraction copying rstbx/diffraction/tst_partial_derivatives.py -> build/lib/rstbx/diffraction copying rstbx/diffraction/tst_predict.py -> build/lib/rstbx/diffraction copying rstbx/diffraction/__init__.py -> build/lib/rstbx/diffraction creating build/lib/rstbx/simage copying rstbx/simage/run_spotfinder.py -> build/lib/rstbx/simage copying rstbx/simage/refine_uc_cr.py -> build/lib/rstbx/simage copying rstbx/simage/integrate_crude.py -> build/lib/rstbx/simage copying rstbx/simage/tst.py -> build/lib/rstbx/simage copying rstbx/simage/run_labelit_index.py -> build/lib/rstbx/simage copying rstbx/simage/explore_completeness.py -> build/lib/rstbx/simage copying rstbx/simage/create.py -> build/lib/rstbx/simage copying rstbx/simage/solver.py -> build/lib/rstbx/simage copying rstbx/simage/__init__.py -> build/lib/rstbx/simage copying rstbx/simage/wx_display.py -> build/lib/rstbx/simage creating build/lib/rstbx/viewer copying rstbx/viewer/results_base.py -> build/lib/rstbx/viewer copying rstbx/viewer/dataset.py -> build/lib/rstbx/viewer copying rstbx/viewer/processing.py -> build/lib/rstbx/viewer copying rstbx/viewer/tst.py -> build/lib/rstbx/viewer copying rstbx/viewer/drivers.py -> build/lib/rstbx/viewer copying rstbx/viewer/frame.py -> build/lib/rstbx/viewer copying rstbx/viewer/pixels3d.py -> build/lib/rstbx/viewer copying rstbx/viewer/calibration.py -> build/lib/rstbx/viewer copying rstbx/viewer/controls.py -> build/lib/rstbx/viewer copying rstbx/viewer/spotfinder_wrap.py -> build/lib/rstbx/viewer copying rstbx/viewer/indexing.py -> build/lib/rstbx/viewer copying rstbx/viewer/__init__.py -> build/lib/rstbx/viewer copying rstbx/viewer/integration.py -> build/lib/rstbx/viewer copying rstbx/viewer/display.py -> build/lib/rstbx/viewer copying rstbx/viewer/calibration_frame.py -> build/lib/rstbx/viewer copying rstbx/viewer/spotfinder_frame.py -> build/lib/rstbx/viewer creating build/lib/rstbx/array_family copying rstbx/array_family/flex.py -> build/lib/rstbx/array_family copying rstbx/array_family/__init__.py -> build/lib/rstbx/array_family creating build/lib/rstbx/cftbx copying rstbx/cftbx/coordinate_frame_converter.py -> build/lib/rstbx/cftbx copying rstbx/cftbx/coordinate_frame_helpers.py -> build/lib/rstbx/cftbx copying rstbx/cftbx/__init__.py -> build/lib/rstbx/cftbx copying rstbx/cftbx/tst_coordinate_frame_converter.py -> build/lib/rstbx/cftbx creating build/lib/rstbx/sublattice_support copying rstbx/sublattice_support/tst_sublattice.py -> build/lib/rstbx/sublattice_support copying rstbx/sublattice_support/__init__.py -> build/lib/rstbx/sublattice_support copying rstbx/sublattice_support/change_basis.py -> build/lib/rstbx/sublattice_support creating build/lib/rstbx/dials_core copying rstbx/dials_core/integration_core.py -> build/lib/rstbx/dials_core copying rstbx/dials_core/__init__.py -> build/lib/rstbx/dials_core creating build/lib/rstbx/bandpass copying rstbx/bandpass/simulated_annealing.py -> build/lib/rstbx/bandpass copying rstbx/bandpass/__init__.py -> build/lib/rstbx/bandpass creating build/lib/rstbx/apps/stills copying rstbx/apps/stills/dials_refinement_preceding_integration.py -> build/lib/rstbx/apps/stills copying rstbx/apps/stills/deltapsi_refinement_preceding_integration.py -> build/lib/rstbx/apps/stills copying rstbx/apps/stills/util.py -> build/lib/rstbx/apps/stills copying rstbx/apps/stills/simple_integration.py -> build/lib/rstbx/apps/stills copying rstbx/apps/stills/__init__.py -> build/lib/rstbx/apps/stills copying rstbx/apps/stills/stills_integration.py -> build/lib/rstbx/apps/stills creating build/lib/rstbx/symmetry/constraints copying rstbx/symmetry/constraints/parameter_reduction.py -> build/lib/rstbx/symmetry/constraints copying rstbx/symmetry/constraints/g_gradients.py -> build/lib/rstbx/symmetry/constraints copying rstbx/symmetry/constraints/__init__.py -> build/lib/rstbx/symmetry/constraints creating build/lib/rstbx/bpcx/detector_model copying rstbx/bpcx/detector_model/detector.py -> build/lib/rstbx/bpcx/detector_model copying rstbx/bpcx/detector_model/instrument_specifics.py -> build/lib/rstbx/bpcx/detector_model copying rstbx/bpcx/detector_model/__init__.py -> build/lib/rstbx/bpcx/detector_model copying rstbx/bpcx/detector_model/tst_detector_model.py -> build/lib/rstbx/bpcx/detector_model creating build/lib/rstbx/diffraction/fastbragg copying rstbx/diffraction/fastbragg/tst_bragg_minimal.py -> build/lib/rstbx/diffraction/fastbragg copying rstbx/diffraction/fastbragg/tst_utils_clustering.py -> build/lib/rstbx/diffraction/fastbragg copying rstbx/diffraction/fastbragg/__init__.py -> build/lib/rstbx/diffraction/fastbragg creating build/lib/cbflib_adaptbx/command_line copying cbflib_adaptbx/command_line/dump.py -> build/lib/cbflib_adaptbx/command_line copying cbflib_adaptbx/command_line/__init__.py -> build/lib/cbflib_adaptbx/command_line creating build/lib/libtbx/jobs copying libtbx/jobs/manager.py -> build/lib/libtbx/jobs copying libtbx/jobs/tst_slurm.py -> build/lib/libtbx/jobs copying libtbx/jobs/tst_batch.py -> build/lib/libtbx/jobs copying libtbx/jobs/tst_manager.py -> build/lib/libtbx/jobs copying libtbx/jobs/fake_slurm.py -> build/lib/libtbx/jobs copying libtbx/jobs/tst_local.py -> build/lib/libtbx/jobs copying libtbx/jobs/__init__.py -> build/lib/libtbx/jobs creating build/lib/libtbx/phil copying libtbx/phil/interface.py -> build/lib/libtbx/phil copying libtbx/phil/tokenizer.py -> build/lib/libtbx/phil copying libtbx/phil/command_line.py -> build/lib/libtbx/phil copying libtbx/phil/tst.py -> build/lib/libtbx/phil copying libtbx/phil/tst_experimental.py -> build/lib/libtbx/phil copying libtbx/phil/experimental.py -> build/lib/libtbx/phil copying libtbx/phil/gui_objects.py -> build/lib/libtbx/phil copying libtbx/phil/parser.py -> build/lib/libtbx/phil copying libtbx/phil/tst_tokenizer.py -> build/lib/libtbx/phil copying libtbx/phil/__init__.py -> build/lib/libtbx/phil copying libtbx/phil/tst_interface.py -> build/lib/libtbx/phil creating build/lib/libtbx/command_line copying libtbx/command_line/show_module_dependencies.py -> build/lib/libtbx/command_line copying libtbx/command_line/start_binary_bundle.py -> build/lib/libtbx/command_line copying libtbx/command_line/env_run.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_env.py -> build/lib/libtbx/command_line copying libtbx/command_line/prime_factors_of.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_python_sys_executable.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_host_and_user.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_tests.py -> build/lib/libtbx/command_line copying libtbx/command_line/clear_paths.py -> build/lib/libtbx/command_line copying libtbx/command_line/make_sphinx_html.py -> build/lib/libtbx/command_line copying libtbx/command_line/sge_available_slots.py -> build/lib/libtbx/command_line copying libtbx/command_line/assert_not_show_diff.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_include_paths.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_build_options.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_installer.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_dist_paths.py -> build/lib/libtbx/command_line copying libtbx/command_line/add_docstrings_with_ai.py -> build/lib/libtbx/command_line copying libtbx/command_line/printenv.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_but_no_repr.py -> build/lib/libtbx/command_line copying libtbx/command_line/line_count.py -> build/lib/libtbx/command_line copying libtbx/command_line/start_process.py -> build/lib/libtbx/command_line copying libtbx/command_line/extract_code_from_txt.py -> build/lib/libtbx/command_line copying libtbx/command_line/nequal.py -> build/lib/libtbx/command_line copying libtbx/command_line/import_all_python.py -> build/lib/libtbx/command_line copying libtbx/command_line/wait_for_file.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_commands.py -> build/lib/libtbx/command_line copying libtbx/command_line/remove_tree.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_files.py -> build/lib/libtbx/command_line copying libtbx/command_line/path_utility.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_numpy_version.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_unused_imports.py -> build/lib/libtbx/command_line copying libtbx/command_line/check_libcpp.py -> build/lib/libtbx/command_line copying libtbx/command_line/parallel_simple.py -> build/lib/libtbx/command_line copying libtbx/command_line/cctbx_chunk.py -> build/lib/libtbx/command_line copying libtbx/command_line/assert_stdin_contains_strings.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_repository_paths.py -> build/lib/libtbx/command_line copying libtbx/command_line/scons.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_mac_app.py -> build/lib/libtbx/command_line copying libtbx/command_line/list_source_files_sorted_by_size.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_full_command_path.py -> build/lib/libtbx/command_line copying libtbx/command_line/list_files.py -> build/lib/libtbx/command_line copying libtbx/command_line/run_tests_parallel.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_windows_exe.py -> build/lib/libtbx/command_line copying libtbx/command_line/epydoc_run.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_number_of_processors.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_unzipsfx.py -> build/lib/libtbx/command_line copying libtbx/command_line/remote_processing.py -> build/lib/libtbx/command_line copying libtbx/command_line/sphinx_build.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_pdb_mmcif_problems.py -> build/lib/libtbx/command_line copying libtbx/command_line/import_all_ext.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_reserved_names.py -> build/lib/libtbx/command_line copying libtbx/command_line/raise_exception_for_testing.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_bin_path.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_untested.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_python_dependencies.py -> build/lib/libtbx/command_line copying libtbx/command_line/bundle_as_exe.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_selfx.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_pythonpath.py -> build/lib/libtbx/command_line copying libtbx/command_line/resource_monitor_plot.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_date_and_time.py -> build/lib/libtbx/command_line copying libtbx/command_line/make_dist.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_in_repositories.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_cctbx_bundle_for_installer.py -> build/lib/libtbx/command_line copying libtbx/command_line/assert_line_count.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_all_on_path.py -> build/lib/libtbx/command_line copying libtbx/command_line/py_compile_all.py -> build/lib/libtbx/command_line copying libtbx/command_line/analyse_code_comments.py -> build/lib/libtbx/command_line copying libtbx/command_line/install_conda.py -> build/lib/libtbx/command_line copying libtbx/command_line/clean_clutter.py -> build/lib/libtbx/command_line copying libtbx/command_line/phil.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_under_build.py -> build/lib/libtbx/command_line copying libtbx/command_line/easy_qsub.py -> build/lib/libtbx/command_line copying libtbx/command_line/__init__.py -> build/lib/libtbx/command_line copying libtbx/command_line/bootstrap.py -> build/lib/libtbx/command_line copying libtbx/command_line/help.py -> build/lib/libtbx/command_line copying libtbx/command_line/ipython_shell_start.py -> build/lib/libtbx/command_line copying libtbx/command_line/create_install_script_bat.py -> build/lib/libtbx/command_line copying libtbx/command_line/assert_stdin_ends_with.py -> build/lib/libtbx/command_line copying libtbx/command_line/git_avoid_merges.py -> build/lib/libtbx/command_line copying libtbx/command_line/remove_unused_imports.py -> build/lib/libtbx/command_line copying libtbx/command_line/install.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_lib_path.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_old_style_classes.py -> build/lib/libtbx/command_line copying libtbx/command_line/reindent.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_clutter.py -> build/lib/libtbx/command_line copying libtbx/command_line/run_pickled_function.py -> build/lib/libtbx/command_line copying libtbx/command_line/list_modules.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_build_path.py -> build/lib/libtbx/command_line copying libtbx/command_line/find_unused_imports_crude.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_environ_usage.py -> build/lib/libtbx/command_line copying libtbx/command_line/sge_qstat_counts.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_variable_names.py -> build/lib/libtbx/command_line copying libtbx/command_line/assert_stdin.py -> build/lib/libtbx/command_line copying libtbx/command_line/dtrace.py -> build/lib/libtbx/command_line copying libtbx/command_line/any2unix.py -> build/lib/libtbx/command_line copying libtbx/command_line/show_numeric_version.py -> build/lib/libtbx/command_line copying libtbx/command_line/seconds_since_the_epoch.py -> build/lib/libtbx/command_line creating build/lib/libtbx/sphinx copying libtbx/sphinx/pubmed.py -> build/lib/libtbx/sphinx copying libtbx/sphinx/python_string.py -> build/lib/libtbx/sphinx copying libtbx/sphinx/phil.py -> build/lib/libtbx/sphinx copying libtbx/sphinx/__init__.py -> build/lib/libtbx/sphinx creating build/lib/libtbx/scheduling copying libtbx/scheduling/mp_handler.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/job_scheduler.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/shared_resource.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/result.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/thread_handler.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/socket_queue.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/process_pool.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/file_queue.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/stacktrace.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/mainthread.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/__init__.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/parallel_for.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/philgen.py -> build/lib/libtbx/scheduling copying libtbx/scheduling/cluster_handler.py -> build/lib/libtbx/scheduling creating build/lib/libtbx/bundle copying libtbx/bundle/copy_all.py -> build/lib/libtbx/bundle copying libtbx/bundle/copy_runtime_sources.py -> build/lib/libtbx/bundle copying libtbx/bundle/install_bat.py -> build/lib/libtbx/bundle copying libtbx/bundle/copy_build_libtbx.py -> build/lib/libtbx/bundle copying libtbx/bundle/__init__.py -> build/lib/libtbx/bundle copying libtbx/bundle/utils.py -> build/lib/libtbx/bundle copying libtbx/bundle/install_csh.py -> build/lib/libtbx/bundle creating build/lib/libtbx/program_utils copying libtbx/program_utils/result.py -> build/lib/libtbx/program_utils copying libtbx/program_utils/statistics_info.py -> build/lib/libtbx/program_utils copying libtbx/program_utils/__init__.py -> build/lib/libtbx/program_utils creating build/lib/libtbx/development copying libtbx/development/timers.py -> build/lib/libtbx/development copying libtbx/development/xcode_build_phase.py -> build/lib/libtbx/development copying libtbx/development/except_Exception.py -> build/lib/libtbx/development copying libtbx/development/__init__.py -> build/lib/libtbx/development creating build/lib/libtbx/server copying libtbx/server/StartServer.py -> build/lib/libtbx/server copying libtbx/server/FileServer.py -> build/lib/libtbx/server copying libtbx/server/SocketServer.py -> build/lib/libtbx/server copying libtbx/server/FileSocket.py -> build/lib/libtbx/server copying libtbx/server/__init__.py -> build/lib/libtbx/server copying libtbx/server/FileClient.py -> build/lib/libtbx/server creating build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/scheduling_helpers.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/sge_utils.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/tst.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/pbs_utils.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/remote.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/generic.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/lsf.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/looping.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/__init__.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/communication.py -> build/lib/libtbx/queuing_system_utils copying libtbx/queuing_system_utils/scheduling.py -> build/lib/libtbx/queuing_system_utils creating build/lib/libtbx/test_utils copying libtbx/test_utils/t96_roster.py -> build/lib/libtbx/test_utils copying libtbx/test_utils/__init__.py -> build/lib/libtbx/test_utils copying libtbx/test_utils/parallel.py -> build/lib/libtbx/test_utils creating build/lib/libtbx/auto_build copying libtbx/auto_build/write_gui_dispatcher_include.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/regenerate_module_files.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/install_base_packages.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/plus_installer.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/installer_utils.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/create_installer.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/create_mac_app.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/create_windows_exe.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/make_bundle.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/create_cctbx_bundle_for_installer.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/create_mac_pkg.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/package_defs.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/install_conda.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/create_windows_installer.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/__init__.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/setup_installer.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/bootstrap.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/install_distribution.py -> build/lib/libtbx/auto_build copying libtbx/auto_build/rpath.py -> build/lib/libtbx/auto_build creating build/lib/libtbx/langchain copying libtbx/langchain/phenix_knowledge.py -> build/lib/libtbx/langchain copying libtbx/langchain/run_build_db.py -> build/lib/libtbx/langchain copying libtbx/langchain/__init__.py -> build/lib/libtbx/langchain copying libtbx/langchain/run_inspect_db.py -> build/lib/libtbx/langchain copying libtbx/langchain/run_query_docs.py -> build/lib/libtbx/langchain creating build/lib/libtbx/jobs/backends copying libtbx/jobs/backends/base.py -> build/lib/libtbx/jobs/backends copying libtbx/jobs/backends/batch.py -> build/lib/libtbx/jobs/backends copying libtbx/jobs/backends/__init__.py -> build/lib/libtbx/jobs/backends copying libtbx/jobs/backends/local.py -> build/lib/libtbx/jobs/backends copying libtbx/jobs/backends/slurm.py -> build/lib/libtbx/jobs/backends creating build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/transfer.py -> build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/util.py -> build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/status.py -> build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/polling.py -> build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/submission.py -> build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/__init__.py -> build/lib/libtbx/queuing_system_utils/processing copying libtbx/queuing_system_utils/processing/errors.py -> build/lib/libtbx/queuing_system_utils/processing creating build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/hypothesis_evaluator.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/graph.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/program_registry.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/file_utils.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/workflow_state.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/validation_inspector.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/session_tools.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/template_builder.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/rate_limit_handler.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/nl_to_phil.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/session.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/format_validation.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/dry_run_manager.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/docs_tools.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/workflow_engine.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/validation_history.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/pattern_manager.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/program_validator.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/event_log.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/advice_preprocessor.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/graph_nodes.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/rules_selector.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/phenix_utils.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/error_classifier.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/metric_evaluator.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/thinking_agent.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/command_builder.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/generate_logic_doc.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/r_factors.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/directive_extractor.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/generate_safety_docs.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/intent_classifier.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/sanity_checker.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/config_loader.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/contract.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/gate_evaluator.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/memory.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/metrics_analyzer.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/raw_advice_scanner.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/transport.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/log_section_extractor.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/mtz_inspector.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/graph_state.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/api_client.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/__init__.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/phil_validator.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/error_analyzer.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/tst_agent_enhancements.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/planner.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/structure_model.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/failure_diagnoser.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/yaml_tools.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/kb_tags.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/event_formatter.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/utils.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/file_metadata.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/best_files_tracker.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/display_data_model.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/strategy_memory.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/placement_checker.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/plan_generator.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/perceive_checks.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/command_postprocessor.py -> build/lib/libtbx/langchain/agent copying libtbx/langchain/agent/directive_validator.py -> build/lib/libtbx/langchain/agent creating build/lib/libtbx/langchain/commands copying libtbx/langchain/commands/base.py -> build/lib/libtbx/langchain/commands copying libtbx/langchain/commands/__init__.py -> build/lib/libtbx/langchain/commands creating build/lib/libtbx/langchain/utils copying libtbx/langchain/utils/text_processing.py -> build/lib/libtbx/langchain/utils copying libtbx/langchain/utils/query.py -> build/lib/libtbx/langchain/utils copying libtbx/langchain/utils/run_utils.py -> build/lib/libtbx/langchain/utils copying libtbx/langchain/utils/__init__.py -> build/lib/libtbx/langchain/utils creating build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/yaml_loader.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/thinking_prompts.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/prompts_hybrid.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/program_registration.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/explanation_prompts.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/plan_schema.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/prompts.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/summary_display.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/phenix_programs.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/plan_template_loader.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/api_schema.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/metric_patterns.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/kb_loader.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/html_report_template.py -> build/lib/libtbx/langchain/knowledge copying libtbx/langchain/knowledge/__init__.py -> build/lib/libtbx/langchain/knowledge creating build/lib/libtbx/langchain/examples copying libtbx/langchain/examples/__init__.py -> build/lib/libtbx/langchain/examples creating build/lib/libtbx/langchain/core copying libtbx/langchain/core/_build_info.py -> build/lib/libtbx/langchain/core copying libtbx/langchain/core/llm.py -> build/lib/libtbx/langchain/core copying libtbx/langchain/core/types.py -> build/lib/libtbx/langchain/core copying libtbx/langchain/core/_version.py -> build/lib/libtbx/langchain/core copying libtbx/langchain/core/__init__.py -> build/lib/libtbx/langchain/core creating build/lib/libtbx/langchain/strategies copying libtbx/langchain/strategies/base.py -> build/lib/libtbx/langchain/strategies copying libtbx/langchain/strategies/__init__.py -> build/lib/libtbx/langchain/strategies creating build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/agent_session_analyzer.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/analysis_request.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/state_extractor.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/report_verifier.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/orientation_strip.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/summarizer.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/analyzer.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/log_info.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/program_identity.py -> build/lib/libtbx/langchain/analysis copying libtbx/langchain/analysis/__init__.py -> build/lib/libtbx/langchain/analysis creating build/lib/libtbx/langchain/log_extraction copying libtbx/langchain/log_extraction/validate.py -> build/lib/libtbx/langchain/log_extraction copying libtbx/langchain/log_extraction/corpus_paths.py -> build/lib/libtbx/langchain/log_extraction copying libtbx/langchain/log_extraction/run_controls.py -> build/lib/libtbx/langchain/log_extraction copying libtbx/langchain/log_extraction/__init__.py -> build/lib/libtbx/langchain/log_extraction copying libtbx/langchain/log_extraction/run_measurements.py -> build/lib/libtbx/langchain/log_extraction copying libtbx/langchain/log_extraction/log_structure_extractor.py -> build/lib/libtbx/langchain/log_extraction creating build/lib/libtbx/langchain/rag copying libtbx/langchain/rag/document_loader.py -> build/lib/libtbx/langchain/rag copying libtbx/langchain/rag/retriever.py -> build/lib/libtbx/langchain/rag copying libtbx/langchain/rag/vector_store.py -> build/lib/libtbx/langchain/rag copying libtbx/langchain/rag/_chroma_resilience.py -> build/lib/libtbx/langchain/rag copying libtbx/langchain/rag/__init__.py -> build/lib/libtbx/langchain/rag creating build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_contract_compliance.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase4_history_flags.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_spurious_stop_after_requested.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_v112_13_fixes.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_settings_list_coercion.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_session_directives.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase5_error_classification.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/canary_utils.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_protocol_version.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_canary.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase9_llm_perturbation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_force_no_ai_server.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_cryoem_metric_evaluator_validation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_scenario_tracer.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_action_item_1.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_stop_condition_false_positive.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_diagnosed_failure_stop.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_planning_framework.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/test_api_keys.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_intent_classifier.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_dry_run.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_data_input_filter.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_density_modify_experiment_type.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_diagnostic_messages.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_solve_action_keywords.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_report_verifier.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_file_encoding.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase2_path_consistency.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_plan_autostop_validation_suppression.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directive_extractor_grounding.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_new_programs.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_h17_strip_executor.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_backward_compat.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase3d_motivating_tutorial.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_autobuild_hl_recovery.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_integration.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_rfree_resolution_stop.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_structure_model.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase8_command_building.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_log_structure_extractor.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_workflow_complete_stop.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_rfree_lock_reconciliation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_old_client_compat.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_sequence_only_routing.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_state_serialization.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_placement_skip_rebuild.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_autobuild_sequence_waiver.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_summary_file.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directive_extractor.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_program_registration.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_initialize_plan_smoke.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_validate_step_after_program_guard.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_stop_reason_prompt.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_extract_raw_advice.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase1_contract_gaps.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_safe_float_consolidation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_n_bugs.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/audit_phase_rename.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_mtz_phases_session_blocking.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_obs_labels_auto_fill.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_stop_condition_fix.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_silent_stop_abort_messages.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_command_builder.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_input_mtz_has_rfree_plumbing.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_event_formatter_file_categories.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phaser_multimodel.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_session_summary.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_agent_build_info.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_mode_isolation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_api_schema.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_workflow_state.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_yaml_tools.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase3_serialization_symmetry.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_session_tools.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_rebuild_template_selection.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_llm_unavailable_notice.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_raw_advice_scanner.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_user_advice_filter.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase6_category_consumer.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_audit_fixes.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_transport.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_halfmap_sigmaa_inventory.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_dependencies.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_resolve_cryo_em_ncs_inject.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directive_extractor_behavior_regression.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_program_identity.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_decision_flow.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directives_integration.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_template.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_file_utils.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_ligandfit_patterns.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_supported_providers_single_source.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_provider_error_classification.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_reasoning_command_divergence.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_after_program_fill_from_raw.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_metric_patterns.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_reactive_deviation_hold.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_extended_stop_phrasings.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_space_group_validation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directive_validator.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_resume_reopen_stages.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_cryoem_stop_validation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase2b_activation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_program_requirements.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_file_categorization.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_ligand_workflow_restart.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_abort_message_all_stops.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_sanity_checker.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phil_namespace_cleaner.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_build_experiment_type_and_rfree.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_copies_tracking.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_plan_lead_program_offer.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_validate_file_overrides.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_docs_tools.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_transport_surfaces.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_strategy_memory.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_advice_preprocessing.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_hypothesis_evaluator.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_after_program_prompt.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_file_categorizer.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_predict_and_build_no_ncs.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_autosol_bugs.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_metrics_analyzer.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_v120_providers.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_stop_reason_codes.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phil_validation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_plan_catchup_failure_semantics.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_classify_mtz_type_001.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_rfree_generate_guard.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directive_validation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_refine_final_rfree.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_error_classifier.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_langchain_tools.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_grounding_stop_after_requested.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_skip_to_program.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_best_files_tracker.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directive_validator_typo_hints.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_provider_lock.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_display_data_model.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_hardcoded_cleanup.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_analysis_request.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_perceive_stop_checks.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_rfree_flags_missing.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_extraction_failure_visibility.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/__init__.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase0_static_audit.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_optional_dep_resilience.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/run_all_tests.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_error_analyzer.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_yaml_config.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_thinking_defense.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_summary_display.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_gate_evaluator.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_event_system.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_preprocessor_file_override.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_utils.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_validation_history.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_log_extractor.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_portkey_embedding_model.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_h18_1_phil_roundtrip.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_plan_generator.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase7_routing_simulation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_mtz_crosscheck.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_fix_verification.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_cc_key_extraction.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_simple_extractor_validation.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_history_analysis.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_skip_promotion.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directive_layer_diagnostics.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/analyze_tutorial_runs.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_dock_and_stop.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_fabricated_stop_condition.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_directive_extractor_sentinel_space_group.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_step1f_single_emit.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_standalone_consistency.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_default_models.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_pattern_manager.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_thinking_agent.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_phase3_bug5.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_plan_schema.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_general_resolver.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_shared_code_imports.py -> build/lib/libtbx/langchain/tests copying libtbx/langchain/tests/tst_explanation_prompts.py -> build/lib/libtbx/langchain/tests creating build/lib/libtbx/langchain/tests/integration copying libtbx/langchain/tests/integration/__init__.py -> build/lib/libtbx/langchain/tests/integration creating build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/tst_b1_stop_after_requested.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/tst_planning.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/tst_directive_extraction.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/tst_b2_gated_wipe_planning.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/framework.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/run_llm_tests.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/tst_a1_extractor_smoke.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/__init__.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/tst_c1_raw_authority.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/tst_framework_self.py -> build/lib/libtbx/langchain/tests/llm copying libtbx/langchain/tests/llm/canary_check.py -> build/lib/libtbx/langchain/tests/llm creating build/lib/simtbx/diffBragg copying simtbx/diffBragg/mpi_logger.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/psf.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/prep_stage2_input.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/device.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/attr_list.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/ensemble_refine_launcher.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/parameter_errors.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/hopper_utils.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/hopper_ensemble_utils.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/phil.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/__init__.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/hopper_io.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/stage_two_utils.py -> build/lib/simtbx/diffBragg copying simtbx/diffBragg/utils.py -> build/lib/simtbx/diffBragg creating build/lib/simtbx/modeling copying simtbx/modeling/FormatHDF5AttributeGeometry.py -> build/lib/simtbx/modeling copying simtbx/modeling/forward_models.py -> build/lib/simtbx/modeling copying simtbx/modeling/__init__.py -> build/lib/simtbx/modeling copying simtbx/modeling/predictions.py -> build/lib/simtbx/modeling creating build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_minimal.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_threads.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_gui_init.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_anisotropic_mosaicity.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_beam.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_gauss_argchk.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_multisource_background.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_multipanel.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_input.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_gaussian_mosaicity2.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_crystal.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_basic.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_pilatus.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/anisotropic_mosaicity.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/sim_data.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/__init__.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_gui_frames.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/utils.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_gaussian_mosaicity.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_mosaic.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/tst_nanoBragg_cbf_write.py -> build/lib/simtbx/nanoBragg copying simtbx/nanoBragg/nanoBragg_gui_dialogs.py -> build/lib/simtbx/nanoBragg creating build/lib/simtbx/gpu copying simtbx/gpu/tst_gpu_multisource_background.py -> build/lib/simtbx/gpu copying simtbx/gpu/tst_shoeboxes.py -> build/lib/simtbx/gpu copying simtbx/gpu/tst_exafel_api.py -> build/lib/simtbx/gpu copying simtbx/gpu/__init__.py -> build/lib/simtbx/gpu creating build/lib/simtbx/kokkos copying simtbx/kokkos/tst_kokkos_lib.py -> build/lib/simtbx/kokkos copying simtbx/kokkos/__init__.py -> build/lib/simtbx/kokkos creating build/lib/simtbx/pixel copying simtbx/pixel/__init__.py -> build/lib/simtbx/pixel creating build/lib/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/base_refiner.py -> build/lib/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/stage_two_refiner.py -> build/lib/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/parameters.py -> build/lib/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/geometry.py -> build/lib/simtbx/diffBragg/refiners copying simtbx/diffBragg/refiners/__init__.py -> build/lib/simtbx/diffBragg/refiners creating build/lib/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py -> build/lib/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/manager.py -> build/lib/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/hexagonal.py -> build/lib/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/tetragonal.py -> build/lib/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/__init__.py -> build/lib/simtbx/diffBragg/refiners/crystal_systems copying simtbx/diffBragg/refiners/crystal_systems/monoclinic.py -> build/lib/simtbx/diffBragg/refiners/crystal_systems creating build/lib/gltbx/command_line copying gltbx/command_line/try_imports.py -> build/lib/gltbx/command_line copying gltbx/command_line/__init__.py -> build/lib/gltbx/command_line creating build/lib/serialtbx/mono_simulation copying serialtbx/mono_simulation/util.py -> build/lib/serialtbx/mono_simulation copying serialtbx/mono_simulation/__init__.py -> build/lib/serialtbx/mono_simulation copying serialtbx/mono_simulation/max_like.py -> build/lib/serialtbx/mono_simulation creating build/lib/serialtbx/detector copying serialtbx/detector/jungfrau.py -> build/lib/serialtbx/detector copying serialtbx/detector/rayonix.py -> build/lib/serialtbx/detector copying serialtbx/detector/cspad.py -> build/lib/serialtbx/detector copying serialtbx/detector/xtc.py -> build/lib/serialtbx/detector copying serialtbx/detector/__init__.py -> build/lib/serialtbx/detector creating build/lib/serialtbx/util copying serialtbx/util/construct_frame.py -> build/lib/serialtbx/util copying serialtbx/util/energy_scan_notch_finder.py -> build/lib/serialtbx/util copying serialtbx/util/time.py -> build/lib/serialtbx/util copying serialtbx/util/__init__.py -> build/lib/serialtbx/util creating build/lib/serialtbx/detector/legacy_metrology copying serialtbx/detector/legacy_metrology/generic_detector.py -> build/lib/serialtbx/detector/legacy_metrology copying serialtbx/detector/legacy_metrology/cspad_detector.py -> build/lib/serialtbx/detector/legacy_metrology copying serialtbx/detector/legacy_metrology/metrology.py -> build/lib/serialtbx/detector/legacy_metrology copying serialtbx/detector/legacy_metrology/__init__.py -> build/lib/serialtbx/detector/legacy_metrology creating build/lib/scitbx/serialization copying scitbx/serialization/__init__.py -> build/lib/scitbx/serialization creating build/lib/scitbx/suffixtree copying scitbx/suffixtree/single.py -> build/lib/scitbx/suffixtree copying scitbx/suffixtree/__init__.py -> build/lib/scitbx/suffixtree creating build/lib/scitbx/command_line copying scitbx/command_line/show_sizes.py -> build/lib/scitbx/command_line copying scitbx/command_line/apply_tapenade_hints.py -> build/lib/scitbx/command_line copying scitbx/command_line/__init__.py -> build/lib/scitbx/command_line copying scitbx/command_line/generate_error_h.py -> build/lib/scitbx/command_line copying scitbx/command_line/histogram.py -> build/lib/scitbx/command_line copying scitbx/command_line/show_exp_times.py -> build/lib/scitbx/command_line copying scitbx/command_line/unicode_examples.py -> build/lib/scitbx/command_line creating build/lib/scitbx/linalg copying scitbx/linalg/svd.py -> build/lib/scitbx/linalg copying scitbx/linalg/eigensystem.py -> build/lib/scitbx/linalg copying scitbx/linalg/ext.py -> build/lib/scitbx/linalg copying scitbx/linalg/__init__.py -> build/lib/scitbx/linalg copying scitbx/linalg/householder.py -> build/lib/scitbx/linalg creating build/lib/scitbx/stdlib copying scitbx/stdlib/__init__.py -> build/lib/scitbx/stdlib creating build/lib/scitbx/misc copying scitbx/misc/__init__.py -> build/lib/scitbx/misc creating build/lib/scitbx/line_search copying scitbx/line_search/__init__.py -> build/lib/scitbx/line_search creating build/lib/scitbx/matrix copying scitbx/matrix/row_echelon.py -> build/lib/scitbx/matrix copying scitbx/matrix/__init__.py -> build/lib/scitbx/matrix creating build/lib/scitbx/examples copying scitbx/examples/minimizer_comparisons.py -> build/lib/scitbx/examples copying scitbx/examples/immoptibox_ports.py -> build/lib/scitbx/examples copying scitbx/examples/lbfgs_recipe.py -> build/lib/scitbx/examples copying scitbx/examples/flex_grid.py -> build/lib/scitbx/examples copying scitbx/examples/chebyshev_lsq_example.py -> build/lib/scitbx/examples copying scitbx/examples/flex_array_loops.py -> build/lib/scitbx/examples copying scitbx/examples/integrating_a_weighted_sinc_function.py -> build/lib/scitbx/examples copying scitbx/examples/principal_axes_of_inertia.py -> build/lib/scitbx/examples copying scitbx/examples/__init__.py -> build/lib/scitbx/examples copying scitbx/examples/bootstrap.py -> build/lib/scitbx/examples copying scitbx/examples/functions.py -> build/lib/scitbx/examples copying scitbx/examples/lbfgs_linear_least_squares_fit.py -> build/lib/scitbx/examples copying scitbx/examples/rigid_body_refinement_core.py -> build/lib/scitbx/examples creating build/lib/scitbx/iso_surface copying scitbx/iso_surface/tst_iso_surface.py -> build/lib/scitbx/iso_surface copying scitbx/iso_surface/__init__.py -> build/lib/scitbx/iso_surface creating build/lib/scitbx/error copying scitbx/error/tst_error.py -> build/lib/scitbx/error copying scitbx/error/__init__.py -> build/lib/scitbx/error creating build/lib/scitbx/glmtbx copying scitbx/glmtbx/__init__.py -> build/lib/scitbx/glmtbx creating build/lib/scitbx/sparse copying scitbx/sparse/__init__.py -> build/lib/scitbx/sparse creating build/lib/scitbx/random copying scitbx/random/__init__.py -> build/lib/scitbx/random creating build/lib/scitbx/lbfgs copying scitbx/lbfgs/tst_func_free_line_search.py -> build/lib/scitbx/lbfgs copying scitbx/lbfgs/tst_ext.py -> build/lib/scitbx/lbfgs copying scitbx/lbfgs/tst_curvatures.py -> build/lib/scitbx/lbfgs copying scitbx/lbfgs/tst_mpi_split_evaluator.py -> build/lib/scitbx/lbfgs copying scitbx/lbfgs/tst_lbfgs_fem.py -> build/lib/scitbx/lbfgs copying scitbx/lbfgs/__init__.py -> build/lib/scitbx/lbfgs creating build/lib/scitbx/wigner copying scitbx/wigner/__init__.py -> build/lib/scitbx/wigner copying scitbx/wigner/tst_wigner3j.py -> build/lib/scitbx/wigner creating build/lib/scitbx/stl copying scitbx/stl/tst_set.py -> build/lib/scitbx/stl copying scitbx/stl/vector.py -> build/lib/scitbx/stl copying scitbx/stl/tst_map.py -> build/lib/scitbx/stl copying scitbx/stl/set.py -> build/lib/scitbx/stl copying scitbx/stl/map.py -> build/lib/scitbx/stl copying scitbx/stl/__init__.py -> build/lib/scitbx/stl copying scitbx/stl/tst_vector.py -> build/lib/scitbx/stl creating build/lib/scitbx/boost_python copying scitbx/boost_python/__init__.py -> build/lib/scitbx/boost_python creating build/lib/scitbx/rigid_body copying scitbx/rigid_body/tst.py -> build/lib/scitbx/rigid_body copying scitbx/rigid_body/__init__.py -> build/lib/scitbx/rigid_body creating build/lib/scitbx/dtmin copying scitbx/dtmin/realsymmetricpseudoinverse.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/twisted_gaussian.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/bounds.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/refinebase.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/min_logging.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/optional.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/compulsory.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/auxiliary.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/reparams.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/__init__.py -> build/lib/scitbx/dtmin copying scitbx/dtmin/minimizer.py -> build/lib/scitbx/dtmin creating build/lib/scitbx/math copying scitbx/math/so3_lie_algebra.py -> build/lib/scitbx/math copying scitbx/math/curve_fitting.py -> build/lib/scitbx/math copying scitbx/math/incremental_SO3_sampling.py -> build/lib/scitbx/math copying scitbx/math/sphere_sphere_intersection.py -> build/lib/scitbx/math copying scitbx/math/tst_undirected_graph.py -> build/lib/scitbx/math copying scitbx/math/undirected_graph.py -> build/lib/scitbx/math copying scitbx/math/distributions.py -> build/lib/scitbx/math copying scitbx/math/gaussian.py -> build/lib/scitbx/math copying scitbx/math/tst_zernike_mom.py -> build/lib/scitbx/math copying scitbx/math/cubic_spline.py -> build/lib/scitbx/math copying scitbx/math/zernike_align_fft.py -> build/lib/scitbx/math copying scitbx/math/superpose.py -> build/lib/scitbx/math copying scitbx/math/tst_bessel_zeros.py -> build/lib/scitbx/math copying scitbx/math/tst_2d_zernike.py -> build/lib/scitbx/math copying scitbx/math/clustering.py -> build/lib/scitbx/math copying scitbx/math/scale_curves.py -> build/lib/scitbx/math copying scitbx/math/spe.py -> build/lib/scitbx/math copying scitbx/math/ext.py -> build/lib/scitbx/math copying scitbx/math/tst_zernike.py -> build/lib/scitbx/math copying scitbx/math/chebyshev_lsq_fit.py -> build/lib/scitbx/math copying scitbx/math/lefebvre.py -> build/lib/scitbx/math copying scitbx/math/des_3_240_21.py -> build/lib/scitbx/math copying scitbx/math/des_3_100_13.py -> build/lib/scitbx/math copying scitbx/math/fit_quadratic_function.py -> build/lib/scitbx/math copying scitbx/math/tst_multivariate_moments.py -> build/lib/scitbx/math copying scitbx/math/fliege_mayer_900_ylm.py -> build/lib/scitbx/math copying scitbx/math/multiple_superposition.py -> build/lib/scitbx/math copying scitbx/math/gumbel.py -> build/lib/scitbx/math copying scitbx/math/besselk.py -> build/lib/scitbx/math copying scitbx/math/sieve_of_eratosthenes.py -> build/lib/scitbx/math copying scitbx/math/periodogram.py -> build/lib/scitbx/math copying scitbx/math/fliege_mayer_900.py -> build/lib/scitbx/math copying scitbx/math/gaussian_fit.py -> build/lib/scitbx/math copying scitbx/math/__init__.py -> build/lib/scitbx/math copying scitbx/math/breakpoint.py -> build/lib/scitbx/math copying scitbx/math/euler_angles.py -> build/lib/scitbx/math copying scitbx/math/tst_so3_lie_algebra.py -> build/lib/scitbx/math copying scitbx/math/fit_peak.py -> build/lib/scitbx/math copying scitbx/math/farey.py -> build/lib/scitbx/math copying scitbx/math/minimum_covering_ellipsoid.py -> build/lib/scitbx/math copying scitbx/math/fliege_mayer_400.py -> build/lib/scitbx/math creating build/lib/scitbx/slatec copying scitbx/slatec/__init__.py -> build/lib/scitbx/slatec creating build/lib/scitbx/lstbx copying scitbx/lstbx/normal_eqns.py -> build/lib/scitbx/lstbx copying scitbx/lstbx/normal_eqns_solving.py -> build/lib/scitbx/lstbx copying scitbx/lstbx/__init__.py -> build/lib/scitbx/lstbx creating build/lib/scitbx/array_family copying scitbx/array_family/flex.py -> build/lib/scitbx/array_family copying scitbx/array_family/__init__.py -> build/lib/scitbx/array_family copying scitbx/array_family/shared.py -> build/lib/scitbx/array_family creating build/lib/scitbx/source_generators copying scitbx/source_generators/lbfgs_fem.py -> build/lib/scitbx/source_generators copying scitbx/source_generators/flex_fwd_h.py -> build/lib/scitbx/source_generators copying scitbx/source_generators/__init__.py -> build/lib/scitbx/source_generators copying scitbx/source_generators/utils.py -> build/lib/scitbx/source_generators creating build/lib/scitbx/graph copying scitbx/graph/tst_tardy_tree_find_paths.py -> build/lib/scitbx/graph copying scitbx/graph/rigidity_matrix_symbolic.py -> build/lib/scitbx/graph copying scitbx/graph/tardy_tree.py -> build/lib/scitbx/graph copying scitbx/graph/rigidity.py -> build/lib/scitbx/graph copying scitbx/graph/tst_rigidity.py -> build/lib/scitbx/graph copying scitbx/graph/tst_tardy_tree.py -> build/lib/scitbx/graph copying scitbx/graph/test_cases_tardy_pdb.py -> build/lib/scitbx/graph copying scitbx/graph/__init__.py -> build/lib/scitbx/graph copying scitbx/graph/tst_utils.py -> build/lib/scitbx/graph copying scitbx/graph/utils.py -> build/lib/scitbx/graph creating build/lib/scitbx/python_utils copying scitbx/python_utils/tst_random_transform.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/command_line.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/robust_statistics.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/signal_utils.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/tst_robust.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/graph_tools.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/__init__.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/random_transform.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/misc.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/tst_graph.py -> build/lib/scitbx/python_utils copying scitbx/python_utils/dicts.py -> build/lib/scitbx/python_utils creating build/lib/scitbx/graphics_utils copying scitbx/graphics_utils/tst.py -> build/lib/scitbx/graphics_utils copying scitbx/graphics_utils/__init__.py -> build/lib/scitbx/graphics_utils creating build/lib/scitbx/tests copying scitbx/tests/tst_r3_utils.py -> build/lib/scitbx/tests copying scitbx/tests/tst_smoothing.py -> build/lib/scitbx/tests copying scitbx/tests/differential_evolution.py -> build/lib/scitbx/tests copying scitbx/tests/simplex.py -> build/lib/scitbx/tests copying scitbx/tests/direct_search_simulated_annealing.py -> build/lib/scitbx/tests copying scitbx/tests/tst_genetic_algorithm_with_mp.py -> build/lib/scitbx/tests copying scitbx/tests/tst_regular_grid_on_unit_sphere.py -> build/lib/scitbx/tests copying scitbx/tests/tst_basic.py -> build/lib/scitbx/tests copying scitbx/tests/__init__.py -> build/lib/scitbx/tests copying scitbx/tests/tst_cubicle_neighbors.py -> build/lib/scitbx/tests copying scitbx/tests/golden_section_search.py -> build/lib/scitbx/tests copying scitbx/tests/tst_minimizer_lbfgs_general.py -> build/lib/scitbx/tests creating build/lib/scitbx/suffixtree/test copying scitbx/suffixtree/test/tst_single.py -> build/lib/scitbx/suffixtree/test copying scitbx/suffixtree/test/__init__.py -> build/lib/scitbx/suffixtree/test creating build/lib/scitbx/suffixtree/boost_python copying scitbx/suffixtree/boost_python/__init__.py -> build/lib/scitbx/suffixtree/boost_python creating build/lib/scitbx/linalg/boost_python copying scitbx/linalg/boost_python/__init__.py -> build/lib/scitbx/linalg/boost_python creating build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/tst_lapack_dsyev.py -> build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/tst_cholesky.py -> build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/tst_matrix.py -> build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/tst_eigensystem.py -> build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/__init__.py -> build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/tst_lapack_svd.py -> build/lib/scitbx/linalg/tests copying scitbx/linalg/tests/tst_svd.py -> build/lib/scitbx/linalg/tests creating build/lib/scitbx/matrix/tests copying scitbx/matrix/tests/tst_row_echelon.py -> build/lib/scitbx/matrix/tests copying scitbx/matrix/tests/__init__.py -> build/lib/scitbx/matrix/tests copying scitbx/matrix/tests/tst_householder.py -> build/lib/scitbx/matrix/tests creating build/lib/scitbx/examples/bevington copying scitbx/examples/bevington/silver.py -> build/lib/scitbx/examples/bevington copying scitbx/examples/bevington/__init__.py -> build/lib/scitbx/examples/bevington creating build/lib/scitbx/glmtbx/boost_python copying scitbx/glmtbx/boost_python/__init__.py -> build/lib/scitbx/glmtbx/boost_python creating build/lib/scitbx/glmtbx/tests copying scitbx/glmtbx/tests/tst.py -> build/lib/scitbx/glmtbx/tests copying scitbx/glmtbx/tests/__init__.py -> build/lib/scitbx/glmtbx/tests creating build/lib/scitbx/sparse/boost_python copying scitbx/sparse/boost_python/__init__.py -> build/lib/scitbx/sparse/boost_python creating build/lib/scitbx/sparse/tests copying scitbx/sparse/tests/tst_sparse.py -> build/lib/scitbx/sparse/tests copying scitbx/sparse/tests/tst_lu_factorization.py -> build/lib/scitbx/sparse/tests copying scitbx/sparse/tests/__init__.py -> build/lib/scitbx/sparse/tests creating build/lib/scitbx/random/boost_python copying scitbx/random/boost_python/__init__.py -> build/lib/scitbx/random/boost_python creating build/lib/scitbx/random/tests copying scitbx/random/tests/__init__.py -> build/lib/scitbx/random/tests copying scitbx/random/tests/tst_random.py -> build/lib/scitbx/random/tests creating build/lib/scitbx/lbfgs/dev copying scitbx/lbfgs/dev/twisted_gaussian.py -> build/lib/scitbx/lbfgs/dev copying scitbx/lbfgs/dev/run.py -> build/lib/scitbx/lbfgs/dev copying scitbx/lbfgs/dev/__init__.py -> build/lib/scitbx/lbfgs/dev creating build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_featherstone.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_free_motion_hard.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/free_motion_reference_impl.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/test_utils.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_spherical_refinement.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_molecules.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/joint_lib.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/wx_molecules.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/featherstone.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/wx_joint_lib.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_singular.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_joint_lib.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/__init__.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/tst_free_motion.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/utils.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/test_simulation.py -> build/lib/scitbx/rigid_body/proto copying scitbx/rigid_body/proto/wx_free_motion.py -> build/lib/scitbx/rigid_body/proto creating build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/tardy.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/body_lib.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/spatial_lib.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/tst_tardy.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/joint_lib.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/featherstone.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/make_bundles.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/wx_tardy.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/tst_basic.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/__init__.py -> build/lib/scitbx/rigid_body/essence copying scitbx/rigid_body/essence/tst_energy_plots.py -> build/lib/scitbx/rigid_body/essence creating build/lib/scitbx/dtmin/regression copying scitbx/dtmin/regression/tst_dtmin_booth.py -> build/lib/scitbx/dtmin/regression copying scitbx/dtmin/regression/tst_dtmin_basic.py -> build/lib/scitbx/dtmin/regression copying scitbx/dtmin/regression/tst_dtmin_twisted.py -> build/lib/scitbx/dtmin/regression copying scitbx/dtmin/regression/__init__.py -> build/lib/scitbx/dtmin/regression creating build/lib/scitbx/math/dev copying scitbx/math/dev/__init__.py -> build/lib/scitbx/math/dev creating build/lib/scitbx/math/boost_python copying scitbx/math/boost_python/__init__.py -> build/lib/scitbx/math/boost_python creating build/lib/scitbx/math/erf copying scitbx/math/erf/__init__.py -> build/lib/scitbx/math/erf creating build/lib/scitbx/math/tests copying scitbx/math/tests/tst_periodogram.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_euler_angles.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_curve_fitting.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_similarity_indices.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_r3_rotation.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_g_function.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_resample.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_line_search.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_math.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_angle_derivative.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_tetrahedron.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_exp_functions.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_weighted_correlation.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_error_propagation_matrix_inverse.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_halton.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_bessel.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_gaussian.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_superpose.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_fit_peak.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_orthonormal_basis.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_quadrature.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_gcd.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_cubic_equation.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_minimum_covering_ellipsoid.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_dmatrix.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/__init__.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_fit_quadratic_function.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_clustering.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_uniform_rotation_matrix.py -> build/lib/scitbx/math/tests copying scitbx/math/tests/tst_gaussian_fit_1d_analytical.py -> build/lib/scitbx/math/tests creating build/lib/scitbx/lstbx/benchmarks copying scitbx/lstbx/benchmarks/__init__.py -> build/lib/scitbx/lstbx/benchmarks creating build/lib/scitbx/lstbx/boost_python copying scitbx/lstbx/boost_python/__init__.py -> build/lib/scitbx/lstbx/boost_python creating build/lib/scitbx/lstbx/tests copying scitbx/lstbx/tests/tst_normal_equations.py -> build/lib/scitbx/lstbx/tests copying scitbx/lstbx/tests/test_problems.py -> build/lib/scitbx/lstbx/tests copying scitbx/lstbx/tests/__init__.py -> build/lib/scitbx/lstbx/tests creating build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_numpy_bridge.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/regression_test.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_flex.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_numpy_scalar_conversions.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_smart_selection.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_flex_argument_passing.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/__init__.py -> build/lib/scitbx/array_family/boost_python copying scitbx/array_family/boost_python/tst_shared.py -> build/lib/scitbx/array_family/boost_python creating build/lib/scitbx/array_family/accessors copying scitbx/array_family/accessors/__init__.py -> build/lib/scitbx/array_family/accessors creating build/lib/scitbx/array_family/detail copying scitbx/array_family/detail/__init__.py -> build/lib/scitbx/array_family/detail creating build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_apply.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_algebras.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_operator_traits_builtin.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_operator_functors.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_reductions.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/operator_functor_info.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_all.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/generate_std_imports.py -> build/lib/scitbx/source_generators/array_family copying scitbx/source_generators/array_family/__init__.py -> build/lib/scitbx/source_generators/array_family creating build/lib/qttbx/regression copying qttbx/regression/tst_chat_message_input.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_subagent.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_skills.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_window_chrome.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_storage.py -> build/lib/qttbx/regression copying qttbx/regression/tst_run_tests_manifest.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_overlay_anchor.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_session.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_message_bubble.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_markdown.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_image.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_storage_session.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_eliding.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_agent_core.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_tool_approval.py -> build/lib/qttbx/regression copying qttbx/regression/tst_phil_widgets.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_diagnostics.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_profile.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_subagent_view.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_conversation_widgets.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_logging_setup.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_mcp_client.py -> build/lib/qttbx/regression copying qttbx/regression/tst_data_manager_widget.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_runner.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_search.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_credentials_dialog.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_question_card.py -> build/lib/qttbx/regression copying qttbx/regression/__init__.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_approval_coordinator.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_auto_height.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_artifact_panel.py -> build/lib/qttbx/regression copying qttbx/regression/tst_chat_tools.py -> build/lib/qttbx/regression creating build/lib/qttbx/viewers copying qttbx/viewers/chimerax.py -> build/lib/qttbx/viewers copying qttbx/viewers/__init__.py -> build/lib/qttbx/viewers creating build/lib/qttbx/examples copying qttbx/examples/phil_widgets_example.py -> build/lib/qttbx/examples copying qttbx/examples/data_manager_example.py -> build/lib/qttbx/examples copying qttbx/examples/__init__.py -> build/lib/qttbx/examples copying qttbx/examples/_helpers.py -> build/lib/qttbx/examples creating build/lib/qttbx/widgets copying qttbx/widgets/__init__.py -> build/lib/qttbx/widgets copying qttbx/widgets/font_init.py -> build/lib/qttbx/widgets creating build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/strings_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/words_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/key_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/ints_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/path_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/float_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/int_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/_colors.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/str_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/atom_selection.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/space_group.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/choice_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/bool_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/delegate.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/__init__.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/floats_widget.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/multiple.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/text_base.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/unit_cell.py -> build/lib/qttbx/widgets/phil copying qttbx/widgets/phil/qstr_widget.py -> build/lib/qttbx/widgets/phil creating build/lib/qttbx/widgets/data_manager copying qttbx/widgets/data_manager/_binding_popup.py -> build/lib/qttbx/widgets/data_manager copying qttbx/widgets/data_manager/widget.py -> build/lib/qttbx/widgets/data_manager copying qttbx/widgets/data_manager/_table_model.py -> build/lib/qttbx/widgets/data_manager copying qttbx/widgets/data_manager/_delegate.py -> build/lib/qttbx/widgets/data_manager copying qttbx/widgets/data_manager/__init__.py -> build/lib/qttbx/widgets/data_manager copying qttbx/widgets/data_manager/_phil_helpers.py -> build/lib/qttbx/widgets/data_manager creating build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/artifact.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/message_input.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/credentials_dialog.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/eliding.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/overlay_anchor.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/tool_approval.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/chat_top_bar.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/conversation_view.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/auto_height.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/search_bar.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/edge_rail.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/conversation_list.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/logging_setup.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/artifact_panel.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/image_cache.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/conversation_search.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/message_bubble.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/markdown_view.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/markdown_export.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/diagnostics.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/__init__.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/tool_call_disclosure.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/question_card.py -> build/lib/qttbx/widgets/chat copying qttbx/widgets/chat/image_lightbox.py -> build/lib/qttbx/widgets/chat creating build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/conversation.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/session.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/subagent.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/skills.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/paths.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/tools.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/mcp_client.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/base.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/storage.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/profile.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/runner.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/events.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/__init__.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/errors.py -> build/lib/qttbx/widgets/chat/agent copying qttbx/widgets/chat/agent/approval.py -> build/lib/qttbx/widgets/chat/agent running egg_info creating cctbx.egg-info writing cctbx.egg-info/PKG-INFO writing dependency_links to cctbx.egg-info/dependency_links.txt writing requirements to cctbx.egg-info/requires.txt writing top-level names to cctbx.egg-info/top_level.txt writing manifest file 'cctbx.egg-info/SOURCES.txt' reading manifest file 'cctbx.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' writing manifest file 'cctbx.egg-info/SOURCES.txt' installing to build/bdist.linux-loongarch64/wheel running install running install_lib creating build/bdist.linux-loongarch64/wheel creating build/bdist.linux-loongarch64/wheel/cctbx_website creating build/bdist.linux-loongarch64/wheel/cctbx_website/command_line copying build/lib/cctbx_website/command_line/tst_comment_to_docstring.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/comment_to_docstring.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/extract_script_from_html_cctbx_doc.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/edit_html.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/run_pdoc_cctbx_api.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/edit_for_boost.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line creating build/bdist.linux-loongarch64/wheel/cctbx_website/regression copying build/lib/cctbx_website/regression/tst_9_doc_maps_boxing.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_5_doc_hlo_map_manager.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_12_script_compare_ss.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_7_doc_low_flex_advanced.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_15_doc_models_hierarchy.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_2_doc_hlo_intro.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_11_script_1.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_4_doc_hlo_data_manager.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_10_doc_programming_tips_1.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_3_doc_hlo_model_manager.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_8_doc_maps_intro.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_13_script_ideal_ss.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_1_template.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_18_doc_programming_tips_2.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_py_from_html.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/exercise.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_17_script_rfactors.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_19_doc_programming_tips_3.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website copying build/lib/cctbx_website/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website copying build/lib/cctbx_website/run_tests.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website creating build/bdist.linux-loongarch64/wheel/boost_adaptbx creating build/bdist.linux-loongarch64/wheel/boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/rational.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/python.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/optional.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/tuple.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/__init__.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/std_pair.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/boost creating build/bdist.linux-loongarch64/wheel/boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/double_overflow.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/show_platform_info.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/segmentation_fault.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/gcd.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/divide_by_zero.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/inexact.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/int_overflow.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/lcm.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/show_environ_usage.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx copying build/lib/boost_adaptbx/hybrid_times.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx copying build/lib/boost_adaptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx creating build/bdist.linux-loongarch64/wheel/boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/minimum_cut_enumerate.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/maximum_clique.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/clustering_algorithm.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/utility.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/breadth_first_search.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/__init__.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/graph_structure_comparison.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/min_cut_max_flow.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/connected_component_algorithm.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/metric.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx creating build/bdist.linux-loongarch64/wheel/mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/suitename copying build/lib/mmtbx/suitename/suiteninit.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suitename.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/transdent.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/diangle.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suiteninput.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suitealyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suitenout.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/dualparse.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/mainchain.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suites.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suitenamedefs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename creating build/bdist.linux-loongarch64/wheel/mmtbx/kinemage copying build/lib/mmtbx/kinemage/ribbon_rendering.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/kinemage copying build/lib/mmtbx/kinemage/ribbons.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/kinemage copying build/lib/mmtbx/kinemage/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/kinemage copying build/lib/mmtbx/kinemage/nrubs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/kinemage copying build/lib/mmtbx/kinemage/validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/kinemage copying build/lib/mmtbx/kinemage/tst_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/kinemage creating build/bdist.linux-loongarch64/wheel/mmtbx/maps copying build/lib/mmtbx/maps/tst_correlation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/tst_composite_omit_map_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/fem.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/composite_omit_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/superpose.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/mtriage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/polder.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/correlation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/kick.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/tst_composite_omit_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/xtrapol8.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/fobs_minus_fobs_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/tst_composite_omit_map_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/map_model_cc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps creating build/bdist.linux-loongarch64/wheel/mmtbx/refinement copying build/lib/mmtbx/refinement/targets.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tardy.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_select_best_starting_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_fit_rotamers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/minimization_ncs_constraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_group.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/occupancies.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/print_statistics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement creating build/bdist.linux-loongarch64/wheel/mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_monitor.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_weight.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_water.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_individual_sites_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_7.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_6.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_rigid_body.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_small_molecule.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_selection.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_residues.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_1H.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_0H.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_his.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_6.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/weight.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_1H.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_individual_sites_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_individual_sites_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_water.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_0.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/rigid_body.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/individual_sites.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/explode_and_refine.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_residue.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/adp.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/occupancy.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/select_best_starting_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/geometry_minimization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/minimization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/flip_peptide_side_chain.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_rigid_body.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/anomalous_scatterer_groups.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement creating build/bdist.linux-loongarch64/wheel/mmtbx/refinement/ensemble_refinement copying build/lib/mmtbx/refinement/ensemble_refinement/ensemble_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/ensemble_refinement copying build/lib/mmtbx/refinement/ensemble_refinement/ensemble_probability.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/ensemble_refinement copying build/lib/mmtbx/refinement/ensemble_refinement/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/ensemble_refinement copying build/lib/mmtbx/refinement/group.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_refinement_flags.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/inspect_tardy_trajectory.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_occupancy_selections.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/calculators.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_anomalous_scatterer_groups.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/refinement_flags.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/weights_params.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/rigid_body.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_misc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/orca.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/wrappers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/minimization_monitor.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/adp_refinement.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/weights.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/energy_monitor.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_real_space_simple.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_group_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement creating build/bdist.linux-loongarch64/wheel/mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/rcsb_web_services.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/tst_rcsb_entry_request.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/rcsb_entry_request.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/tst_rcsb_web_services.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/wwpdb creating build/bdist.linux-loongarch64/wheel/mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/riding.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_11.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_7.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_16.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_8.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_15.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_14.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_validate_H.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_minimize.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_const_dihedral.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_6.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/neutron_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_time.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/reduce_hydrogen.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_connectivity.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_9.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_13.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_12.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/validate_H.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_8.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/parameterization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/specialised_hydrogen_atoms.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_coefficients.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_7.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_10.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_6.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/connectivity.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/build_hydrogens.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_9.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens creating build/bdist.linux-loongarch64/wheel/mmtbx/alignment copying build/lib/mmtbx/alignment/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/alignment creating build/bdist.linux-loongarch64/wheel/mmtbx/chemical_components copying build/lib/mmtbx/chemical_components/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/chemical_components copying build/lib/mmtbx/chemical_components/cif_parser.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/chemical_components copying build/lib/mmtbx/chemical_components/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/chemical_components creating build/bdist.linux-loongarch64/wheel/mmtbx/masks copying build/lib/mmtbx/masks/tst_masks.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/masks copying build/lib/mmtbx/masks/tst_asu_mask.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/masks copying build/lib/mmtbx/masks/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/masks copying build/lib/mmtbx/lattice.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/proq2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/den copying build/lib/mmtbx/den/plot_weights.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/den copying build/lib/mmtbx/den/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/den copying build/lib/mmtbx/den/refinement.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/den creating build/bdist.linux-loongarch64/wheel/mmtbx/command_line copying build/lib/mmtbx/command_line/sort_hetatms.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/undowser2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/suitename.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/show_r_factors_by_shell.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_vs_sequence.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fetch_pdb.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ramalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rebuild_rotarama_cache.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/molprobity.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/barbed_wire_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/development_fem.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rna_validate_suites.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/plan_sad_experiment.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/chiral_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/find_tls_groups.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mon_lib_cif_triage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/pdb_interpretation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rebuild_cablam_cache.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/models_as_chains.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/tls_as_xyz.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fmodel.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rna_validate_puckers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/altloc_remediate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cif_as_mtz.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mp_geo.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/atom_valence_simple.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cablam.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/table_one.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ligand_restraints_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rna_validate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/superpose.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/density_modification.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/map_to_structure_factors.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/holton_geometry_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/maps.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/select_best_starting_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/geometry_minimization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/next_gen_residue_typing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/debug_riding.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/nonbonded_overlaps.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/process_predicted_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ringer.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/emringer.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/probescore_ligand.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/xtriage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/r_factor_statistics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/comparama.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/water_b_factors.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ribbons.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rigid_bond_test.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/reduce_cryoem_resolution.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/kinemage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/hbond.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/map_comparison.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/validation_summary.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/clashscore2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/map_box.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/xmanip.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/matthews.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/real_space_correlation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/helix_sheet_recs_as_pdb_files.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/remove_outliers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/polder.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/pdbtools.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fab_elbow_angle.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/quantum_interface.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/tls.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_vs_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cbetadev.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/hydrogenate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/taam_minus_iam.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/next_gen_atom_typing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/arginine_geometry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/reciprocal_space_arrays.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/electrons.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/apply_ncs_to_ligand.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rna_validate_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/reduce2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rotalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/grow_density.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/f000.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/dynamics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rank_scale_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ss_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cc_star.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/estimate_bijvoet_ratio.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/real_space_diff_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/distance_difference.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/prepare_pdb_deposition.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/angle.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/validate_ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/probe2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_vs_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/sisa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/where_is_that_cif_file.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/super.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mask.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/undowser.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mp_validate_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/omegalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/emringer_score.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cablam_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/search_pdb_symmetry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/map_to_model_histogram.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/perigee.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_model_distances.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/maximum_entropy_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/xtrapol8.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/tls_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/find_residue_in_pdb.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/refine_anomalous_substructure.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rama_z.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/verify_mon_lib_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/find_peaks_holes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/secondary_structure_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/prune_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/pdb_atom_selection.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/secondary_structure_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mtz2map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/suitename_old.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fake_f_obs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fobs_minus_fobs_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/validate_H_cl_app.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/development_aev.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/massage_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line creating build/bdist.linux-loongarch64/wheel/mmtbx/validation copying build/lib/mmtbx/validation/undowser2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/fav_lists.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/waters.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/ramalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/barbed_wire_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/sequence.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/ligand_interactions.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/cablam.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation creating build/bdist.linux-loongarch64/wheel/mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_suitename.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_rama_z_02.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_probe2_asu_bond_proxies.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_cbetadev_02.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_do_flips_clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_arguments.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_undowser2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_undowser.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_chiral_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_experimental.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_mp_validate_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_mp_geo_endtoend.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_omegalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_cbetadev.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_mp_geo.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_symmetry_SS.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_model_properties.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_rama_z_01.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_ramalyze2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_ramalyze_rare.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_rna_validate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_keep_hydrogens.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_barbed_wire_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_cablam.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_rotalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_find_region_max_value.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/run_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_clashscore_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_ramalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_waters.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_cablam_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/rna_validate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/holton_geometry_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/cbd_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/graphics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/comparama.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/experimental.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/clashscore2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation creating build/bdist.linux-loongarch64/wheel/mmtbx/validation/ramachandran copying build/lib/mmtbx/validation/ramachandran/convert_from_text.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/ramachandran copying build/lib/mmtbx/validation/ramachandran/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/ramachandran copying build/lib/mmtbx/validation/convert_lists.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/ensembles.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/cbetadev.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/rotalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/phi_psi_2_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/validate_ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/undowser.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/model_properties.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation creating build/bdist.linux-loongarch64/wheel/mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/mp_geo.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/percentile_clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/kinemage_templates.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/probescore_ligand.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/percentile_mpscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/table_from_json.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/mp_validate_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/omegalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/comprehensive_residue.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/rama_z.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/mean_devs_PRO_phi_psi.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/analyze_peptides.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/mean_devs_others_phi_psi.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/chain_comparison.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/datasets.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation creating build/bdist.linux-loongarch64/wheel/mmtbx/geometry copying build/lib/mmtbx/geometry/shared_types.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/topology.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/clash.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/altloc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/sphere_surface_sampling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/indexing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/asa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry creating build/bdist.linux-loongarch64/wheel/mmtbx/regression copying build/lib/mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_metal_link_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_loop_closure.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_apply_cif_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_maps_misc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_map_model_cc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_validate_ligands_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_holton_geometry_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_model_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_find_ss_structure_cif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_map_type_parser.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/make_fake_anomalous_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_mtz2map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_find_ss_structure.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_geo_min_restraints_phil.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_command_line_input.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce_timeout.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce_cryoem_resolution.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_statistics_output.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_find_ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ligand_ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ringer.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_validate_ligands_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_sequence_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_model_vs_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_process_predicted_model_cif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_scattering_table.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_origin_ids.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_rdkit_utils_molecule.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_adp_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ml_estimate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_minimize_chain.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_add_arrows_on_plot.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_cif_as_mtz_wavelengths.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_multi_residue_class.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_flipping_his.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_regularize_from_pdb_cif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_scattering_type_registry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_validate_ligands_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_superpose.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression creating build/bdist.linux-loongarch64/wheel/mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_symmetry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_merge.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_neutralize_scatterers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_pairs_within.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_dedeuterate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_ramachandran.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_biomt_mtrix_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_utils_merge_models.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_remove_alternative_conformations.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_cart_ref_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_mtrix.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_tors_ref_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_biomt_mtrix.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_get_vdw_radii.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/tst_real_space_correlation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_altloc_remediate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_table_one.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_sort_hetatms.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_chain_comparison.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression creating build/bdist.linux-loongarch64/wheel/mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_ncs_restraints_group_list.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_ncs_search.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_minimization_ncs_constraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_ncs_search_flips.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_ncs_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/tst_clashes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_msa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_anomalous_substructure.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_dynamics_cli.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_no_cryst1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ligand_interactions.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_prune_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_validation_summary.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_sampled_model_density.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_models_to_from_chains.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression creating build/bdist.linux-loongarch64/wheel/mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_get_t_scheme.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_optimise_amplitudes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_as_xyz.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_refinement_fft.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tst_polder_box.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_psi_phi_extraction.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_rdkit_utils_fragmentation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_and_dm.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_domains_from_pae.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_schrodinger_interface.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_geometry_minimization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_pdbtools.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_altloc_chain_break.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_rigid_bond_test.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_refine_anomalous_substructure.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_model_vs_sequence.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_misc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_mmtbx_refinement_wrappers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_fd.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce2_no_symmetry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_alignment.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ribbons.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_chain_comparison_cif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_special_term_at_end.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_add_h_to_water.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_isomorphous_difference_misc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_angle.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_process_predicted_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_lrv.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_regularize_from_pdb.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce_switch.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_arginine_geometry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce_custom_bond.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_examples.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ss_validation_long_chainids.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_probe.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_ccs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_validate_ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_cis_trans_peptide_link.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_rank_scale_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ordered_solvent.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_cc_star.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_domains_from_pae_cif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression creating build/bdist.linux-loongarch64/wheel/mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_aniso_scaler.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/scaler.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/kbu_refinery.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_mosaic.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_scaler.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/example.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/f_model_all_scales.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/multi_mask_bulk_solvent.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/bulk_solvent_and_scaling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/example2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/mosaic.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_flat_nonuniform.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/superpose.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/real_space copying build/lib/mmtbx/real_space/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/real_space copying build/lib/mmtbx/real_space/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/real_space creating build/bdist.linux-loongarch64/wheel/mmtbx/ligands copying build/lib/mmtbx/ligands/tst_xtal_screens.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/hierarchy_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/tst_ready_set_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/electrons.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/ready_set_basics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/tst_electron_scripting.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/rdkit_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/chemistry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/xtal_screens.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/ready_set_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/map_tools.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/building copying build/lib/mmtbx/building/tst_extend_sidechains_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building creating build/bdist.linux-loongarch64/wheel/mmtbx/building/ligands copying build/lib/mmtbx/building/ligands/tst_00.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/ligands copying build/lib/mmtbx/building/ligands/lifi.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/ligands copying build/lib/mmtbx/building/ligands/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/ligands copying build/lib/mmtbx/building/minimize_chain.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building copying build/lib/mmtbx/building/extend_sidechains.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building copying build/lib/mmtbx/building/merge_models.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building copying build/lib/mmtbx/building/tst_extend_sidechains.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building creating build/bdist.linux-loongarch64/wheel/mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/starting_conformations.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/berkeley_ramalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/ccd.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building copying build/lib/mmtbx/building/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building copying build/lib/mmtbx/building/cablam_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building copying build/lib/mmtbx/process_predicted_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/max_lik copying build/lib/mmtbx/max_lik/max_like_non_uniform.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/max_lik copying build/lib/mmtbx/max_lik/tst_maxlik.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/max_lik copying build/lib/mmtbx/max_lik/tst_max_lik.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/max_lik copying build/lib/mmtbx/max_lik/maxlik.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/max_lik copying build/lib/mmtbx/max_lik/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/max_lik creating build/bdist.linux-loongarch64/wheel/mmtbx/utils copying build/lib/mmtbx/utils/ntc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/rotatable_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/fab_elbow_angle.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/grid2d.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/tst_switch_rotamers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/utils creating build/bdist.linux-loongarch64/wheel/mmtbx/nci copying build/lib/mmtbx/nci/skew_kurt_plot.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/nci copying build/lib/mmtbx/nci/hbond.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/nci copying build/lib/mmtbx/nci/data_filtering.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/nci copying build/lib/mmtbx/nci/tst_hbond.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/nci copying build/lib/mmtbx/nci/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/nci creating build/bdist.linux-loongarch64/wheel/mmtbx/density_modification copying build/lib/mmtbx/density_modification/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/density_modification copying build/lib/mmtbx/density_modification/tst_density_modification.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/density_modification creating build/bdist.linux-loongarch64/wheel/mmtbx/ions copying build/lib/mmtbx/ions/identify.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_approx_zn.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_symmetry_axis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pickle.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/halides.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_geometries.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions creating build/bdist.linux-loongarch64/wheel/mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/dump_sites.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/tst_classifier_01.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/tst_classifier_02.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/tst_validate_mg.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/build.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_k.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/environment.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/geometry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_parameters.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_validate_ca.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_ca_svm.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_environment.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_ca.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_mg.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions creating build/bdist.linux-loongarch64/wheel/mmtbx/model copying build/lib/mmtbx/model/model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/model copying build/lib/mmtbx/model/restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/model copying build/lib/mmtbx/model/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/model copying build/lib/mmtbx/model/statistics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/model copying build/lib/mmtbx/model/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/model creating build/bdist.linux-loongarch64/wheel/mmtbx/reduce copying build/lib/mmtbx/reduce/Optimizers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/reduce copying build/lib/mmtbx/reduce/InteractionGraph.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/reduce copying build/lib/mmtbx/reduce/Movers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/reduce copying build/lib/mmtbx/reduce/tst_mmtbx_reduce_ext.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/reduce copying build/lib/mmtbx/reduce/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/reduce copying build/lib/mmtbx/restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/arrays.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/f_model_info.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/f_model copying build/lib/mmtbx/f_model/f_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/f_model copying build/lib/mmtbx/f_model/f_model_info.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/f_model copying build/lib/mmtbx/f_model/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/f_model creating build/bdist.linux-loongarch64/wheel/mmtbx/ncs copying build/lib/mmtbx/ncs/cartesian_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/tncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs_search.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs_restraints_group_list.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs_params.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/xmanip.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/real_space_correlation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/dynamics copying build/lib/mmtbx/dynamics/constants.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/ensemble_cd.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/simulated_annealing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/tst_sa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/cartesian_dynamics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/tst_cartesian_dynamics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/pdb_distances.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/pdbtools.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/find_peaks.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/model_vs_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/tls copying build/lib/mmtbx/tls/perm10.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/tls_as_xyz.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/command_line.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/ladp.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/optimise_amplitudes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm15.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/tools.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/decompose.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm12.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm13.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm14.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm11.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/xmanip_tasks.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/msa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/resolve_resources.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/invariant_domain.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/solvent copying build/lib/mmtbx/solvent/ensemble_ordered_solvent.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/solvent copying build/lib/mmtbx/solvent/map_to_water.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/solvent copying build/lib/mmtbx/solvent/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/solvent copying build/lib/mmtbx/solvent/ordered_solvent.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/solvent creating build/bdist.linux-loongarch64/wheel/mmtbx/programs copying build/lib/mmtbx/programs/undowser2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/suitename.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/model_vs_sequence.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ramalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/barbed_wire_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rna_validate_suites.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/chiral_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/fetch.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/fmodel.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rna_validate_puckers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/atom_valence_simple.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/cablam.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ligand_restraints_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rna_validate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/holton_geometry_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/next_gen_residue_typing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/debug_riding.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/nonbonded_overlaps.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/process_predicted_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/emringer.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/probescore_ligand.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/comparama.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/water_b_factors.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ribbons.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/reduce_cryoem_resolution.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/hbond.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/clashscore2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/matthews.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/real_space_correlation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/polder.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/pdbtools.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/quantum_interface.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/elbow_services.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/cbetadev.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/hydrogenate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/taam_minus_iam.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/next_gen_atom_typing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/arginine_geometry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rna_validate_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/reduce2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rotalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ss_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/atom_selection.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/prepare_pdb_deposition.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/validate_ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/probe2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/mask.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/undowser.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/mp_validate_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/omegalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/cablam_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/xtrapol8.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rama_z.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/suitename_old.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/pdb_as_cif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ss_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs creating build/bdist.linux-loongarch64/wheel/mmtbx/polygon copying build/lib/mmtbx/polygon/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/polygon copying build/lib/mmtbx/polygon/tst_polygon_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/polygon copying build/lib/mmtbx/polygon/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/polygon copying build/lib/mmtbx/polygon/output.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/polygon copying build/lib/mmtbx/polygon/tst_gui.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/polygon creating build/bdist.linux-loongarch64/wheel/mmtbx/sisa creating build/bdist.linux-loongarch64/wheel/mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_ga.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_masks.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_util.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_input.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_mtz.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_optimize.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa copying build/lib/mmtbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/grow_density.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/rotamer copying build/lib/mmtbx/rotamer/nqh.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/sidechain_angles.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/graphics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/ramachandran_eval.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/tst_rotamer_eval.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/rotamer_eval.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/ramachandran_eval_deprecated.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/n_dim_table.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer creating build/bdist.linux-loongarch64/wheel/mmtbx/ringer copying build/lib/mmtbx/ringer/tst_emringer.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/em_scoring.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/emringer.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/tst_em_rscc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/em_rolling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/em_rscc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/pdb_symmetry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/rsr copying build/lib/mmtbx/rsr/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rsr copying build/lib/mmtbx/rsr/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rsr copying build/lib/mmtbx/domains_from_pae.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/probe copying build/lib/mmtbx/probe/tst_mmtbx_probe_ext.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/probe copying build/lib/mmtbx/probe/AtomTypes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/probe copying build/lib/mmtbx/probe/Helpers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/probe copying build/lib/mmtbx/probe/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/probe copying build/lib/mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/probe creating build/bdist.linux-loongarch64/wheel/mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_idealized_aa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_metal_coordination.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/mmtbx_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/hydrogen_restrictions.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/cif_types.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_glyco_coordination.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/pdb_interpretation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_cif_triage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/glyco_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_carbo_linking.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_neutron_distance.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_iron_sulfur_clusters.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_selection.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/glyco_chiral_values.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/rna_sugar_pucker_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_rotamer_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/idealized_aa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/conv_v2_v3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_glyco_hand.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_rna_dna_interpretation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_cif_types.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/correct_hydrogen_geometries.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_chg.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_motif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/server.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/populate_auto_linking_origin_ids.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/bondlength_defaults.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_all_cif_files.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_user_supplied_library.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/conformation_dependent_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/rotamer_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_paral_geo.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/linking_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_server.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/cif_triage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_correct_hydrogens.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_superpose_ideal.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_deuterium_terminii.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_protein_interpretation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_linking.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/linking_setup.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/linking_mixins.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/geostd_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_geo_reduce_for_tardy.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library creating build/bdist.linux-loongarch64/wheel/mmtbx/twinning copying build/lib/mmtbx/twinning/probabalistic_detwinning.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/twinning copying build/lib/mmtbx/twinning/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/twinning copying build/lib/mmtbx/twinning/twin_f_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/twinning creating build/bdist.linux-loongarch64/wheel/mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/regularize_from_pdb.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/find_ss_from_ca.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/tst_segid.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure creating build/bdist.linux-loongarch64/wheel/mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_ss_id_ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/ss_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_io.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/tst_insertion_codes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/secondary_structure_params.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/proteins.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/ss_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/nucleic_acids.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure creating build/bdist.linux-loongarch64/wheel/mmtbx/atomic_environment_vectors copying build/lib/mmtbx/atomic_environment_vectors/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/atomic_environment_vectors copying build/lib/mmtbx/atomic_environment_vectors/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/atomic_environment_vectors copying build/lib/mmtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/sample_rotamers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/rotamer_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/all_his.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/idealized_aa_residues creating build/bdist.linux-loongarch64/wheel/mmtbx/scaling copying build/lib/mmtbx/scaling/bayesian_estimator.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/make_param.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/outlier_plots.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_xtriage_twin_analyses.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/plan_sad_experiment.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/outlier_rejection.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/mean_f_rms_f.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/relative_wilson.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_absences.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_scaling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/pre_scale.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/ta_alpha_beta_calc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/basic_analyses.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/random_omit.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/xtriage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/twmad_scale.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/sigmaa_estimation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/matthews.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/remove_outliers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_mean_f_rms_f.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_outlier.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/massage_twin_detwin_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_sigmaa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/relative_scaling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/absence_likelihood.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/absolute_scaling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/thorough_outlier_test.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_massage_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/absences.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/fa_estimation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/pair_analyses.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_bayesian_estimator.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/data_statistics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/twin_analyses.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_xtriage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_plan_sad_experiment.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling creating build/bdist.linux-loongarch64/wheel/mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_03.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/pair_interaction.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_00.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_05.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_04.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_02.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_01.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction creating build/bdist.linux-loongarch64/wheel/mmtbx/ias copying build/lib/mmtbx/ias/tst_ias.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ias copying build/lib/mmtbx/ias/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ias copying build/lib/mmtbx/clashes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/geometry_restraints creating build/bdist.linux-loongarch64/wheel/mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/reference_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_reference_ramachandran.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_ter_records.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_reference_hbond.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/base_qm_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_reference_coordinate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/reference.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/ramachandran.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/external.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/geo_file_parsing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/mopac_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_c_beta_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/c_beta.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_replace_in_place.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_xtb_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_reference_coordinate2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_ramachandran.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_geo_file_parsing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/quantum_interface.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/qm_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_orca_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/quantum_restraints_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/qi_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/afitt.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/xtb_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/orca_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints creating build/bdist.linux-loongarch64/wheel/mmtbx/disorder copying build/lib/mmtbx/disorder/backbone.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/tst_backbone.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/analyze_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/tst_analyze_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/disorder copying build/lib/mmtbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/check_cdl_database.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_mcl_01.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/rdl_database.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/density_dependent_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/omega.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/multi_residue_cdl_class.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/mcl_sf4_coordination.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_cdl.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/sf4_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_mcl_03.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/altloc_weighting.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/mcl.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/LinkedResidues.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/cdl_database.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/investigate_rotamer_space.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/testing_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_multi_residue_rna.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_mcl_02.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_pH_mechanism.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_omega_cdl.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/cdl_setup.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/multi_base_class.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/omega_database.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/hydrogen_bonding.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/cdl_svl_database.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/cdl_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/bond_angle_registry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/multi_residue_class.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/metal_coordination_library.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/hpdl_database.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_enol_peptide.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_cdl_esd.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_hpdl.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/enol_peptide_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_mutli_residue.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/nucleotides.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/pH_dependent_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_rdl.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/histidines.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/rotamers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library creating build/bdist.linux-loongarch64/wheel/xcif creating build/bdist.linux-loongarch64/wheel/xcif/regression copying build/lib/xcif/regression/tst_non_strict_mode.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_api_compat.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_iotbx_cif_reader_engine.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_parse_verify.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_quoted_string_delimiter.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_utf8.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_example_tokenize.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_roundtrip.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_iotbx_cif_reader_parity.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_semicolon_field_strict.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_gil_release.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_string_interning.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_pdb_coordinates.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_bindings.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_pdb_sf.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_example_parse.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_memory.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression creating build/bdist.linux-loongarch64/wheel/xcif/benchmarks copying build/lib/xcif/benchmarks/run_benchmarks.py -> build/bdist.linux-loongarch64/wheel/./xcif/benchmarks copying build/lib/xcif/benchmarks/__init__.py -> build/bdist.linux-loongarch64/wheel/./xcif/benchmarks copying build/lib/xcif/__init__.py -> build/bdist.linux-loongarch64/wheel/./xcif copying build/lib/xcif/run_tests.py -> build/bdist.linux-loongarch64/wheel/./xcif creating build/bdist.linux-loongarch64/wheel/cootbx copying build/lib/cootbx/ligand_checklist.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/xmlrpc_server.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/hydrogens_button.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/view_refinement.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/simple_zoom_list.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/validation_lists.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/interactive_edit.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/watch_file.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cootbx creating build/bdist.linux-loongarch64/wheel/fable copying build/lib/fable/intrinsics.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/simple_compilation.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./fable creating build/bdist.linux-loongarch64/wheel/fable/command_line copying build/lib/fable/command_line/split.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/command_line/show_calls.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/command_line/insert_write_at_start_of_each_procedure.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/command_line/fem_include_search_paths.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/command_line/read.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/command_line/cout.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/tokenization.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/tst_read.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/__init__.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/equivalence.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/read.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/utils.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/tst_cout_compile.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/tst_equivalence.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/run_tests.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/tst_cout.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/cout.py -> build/bdist.linux-loongarch64/wheel/./fable creating build/bdist.linux-loongarch64/wheel/smtbx creating build/bdist.linux-loongarch64/wheel/smtbx/refinement creating build/bdist.linux-loongarch64/wheel/smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/site.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints creating build/bdist.linux-loongarch64/wheel/smtbx/refinement/constraints/geometrical copying build/lib/smtbx/refinement/constraints/geometrical/hydrogens.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/geometrical copying build/lib/smtbx/refinement/constraints/geometrical/all.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/geometrical copying build/lib/smtbx/refinement/constraints/geometrical/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/geometrical copying build/lib/smtbx/refinement/constraints/rigid.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/fpfdp.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/all.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/adp.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints creating build/bdist.linux-loongarch64/wheel/smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_occupancies.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_lbfgs.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_disorder.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_reparametrisation.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_same_group.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_rigid.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_constrained_structure.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_direction.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/occupancy.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints creating build/bdist.linux-loongarch64/wheel/smtbx/refinement/restraints copying build/lib/smtbx/refinement/restraints/origin_fixing_restraints.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/restraints copying build/lib/smtbx/refinement/restraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/restraints copying build/lib/smtbx/refinement/restraints/adp_restraints.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/restraints copying build/lib/smtbx/refinement/weighting_schemes.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement copying build/lib/smtbx/refinement/least_squares.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement copying build/lib/smtbx/refinement/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement creating build/bdist.linux-loongarch64/wheel/smtbx/masks copying build/lib/smtbx/masks/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/masks creating build/bdist.linux-loongarch64/wheel/smtbx/absolute_structure copying build/lib/smtbx/absolute_structure/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/absolute_structure creating build/bdist.linux-loongarch64/wheel/smtbx/command_line copying build/lib/smtbx/command_line/absolute_structure.py -> build/bdist.linux-loongarch64/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/anom_refine.py -> build/bdist.linux-loongarch64/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/refine.py -> build/bdist.linux-loongarch64/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/masks.py -> build/bdist.linux-loongarch64/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/benchmark_refinement.py -> build/bdist.linux-loongarch64/wheel/./smtbx/command_line copying build/lib/smtbx/development.py -> build/bdist.linux-loongarch64/wheel/./smtbx creating build/bdist.linux-loongarch64/wheel/smtbx/regression creating build/bdist.linux-loongarch64/wheel/smtbx/regression/test_data copying build/lib/smtbx/regression/test_data/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/regression/test_data copying build/lib/smtbx/regression/tst_commandline_anomrefine.py -> build/bdist.linux-loongarch64/wheel/./smtbx/regression copying build/lib/smtbx/regression/tst_commandline_refine.py -> build/bdist.linux-loongarch64/wheel/./smtbx/regression copying build/lib/smtbx/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/regression creating build/bdist.linux-loongarch64/wheel/smtbx/stl copying build/lib/smtbx/stl/map.py -> build/bdist.linux-loongarch64/wheel/./smtbx/stl copying build/lib/smtbx/stl/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/stl copying build/lib/smtbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./smtbx copying build/lib/smtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx creating build/bdist.linux-loongarch64/wheel/smtbx/ab_initio copying build/lib/smtbx/ab_initio/charge_flipping.py -> build/bdist.linux-loongarch64/wheel/./smtbx/ab_initio copying build/lib/smtbx/ab_initio/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/ab_initio creating build/bdist.linux-loongarch64/wheel/smtbx/ab_initio/tests copying build/lib/smtbx/ab_initio/tests/tst_charge_flipping.py -> build/bdist.linux-loongarch64/wheel/./smtbx/ab_initio/tests copying build/lib/smtbx/ab_initio/tests/tst_ab_initio_ext.py -> build/bdist.linux-loongarch64/wheel/./smtbx/ab_initio/tests copying build/lib/smtbx/ab_initio/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/ab_initio/tests creating build/bdist.linux-loongarch64/wheel/smtbx/array_family copying build/lib/smtbx/array_family/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/array_family creating build/bdist.linux-loongarch64/wheel/smtbx/structure_factors copying build/lib/smtbx/structure_factors/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/structure_factors creating build/bdist.linux-loongarch64/wheel/smtbx/structure_factors/direct copying build/lib/smtbx/structure_factors/direct/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/structure_factors/direct copying build/lib/smtbx/utils.py -> build/bdist.linux-loongarch64/wheel/./smtbx creating build/bdist.linux-loongarch64/wheel/smtbx/source_generators copying build/lib/smtbx/source_generators/flex_fwd_h.py -> build/bdist.linux-loongarch64/wheel/./smtbx/source_generators copying build/lib/smtbx/source_generators/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/source_generators copying build/lib/smtbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./smtbx creating build/bdist.linux-loongarch64/wheel/fast_linalg copying build/lib/fast_linalg/__init__.py -> build/bdist.linux-loongarch64/wheel/./fast_linalg creating build/bdist.linux-loongarch64/wheel/ccp4io_adaptbx copying build/lib/ccp4io_adaptbx/tst.py -> build/bdist.linux-loongarch64/wheel/./ccp4io_adaptbx copying build/lib/ccp4io_adaptbx/copy_files.py -> build/bdist.linux-loongarch64/wheel/./ccp4io_adaptbx copying build/lib/ccp4io_adaptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./ccp4io_adaptbx creating build/bdist.linux-loongarch64/wheel/wxtbx copying build/lib/wxtbx/segmentedctrl.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/mtz_dump.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/bitmaps.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/layout.py -> build/bdist.linux-loongarch64/wheel/./wxtbx creating build/bdist.linux-loongarch64/wheel/wxtbx/reports copying build/lib/wxtbx/reports/pdb_symmetry.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/reports copying build/lib/wxtbx/reports/blast.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/reports copying build/lib/wxtbx/reports/__init__.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/reports copying build/lib/wxtbx/info_panels.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/listeditor.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/checklistctrl.py -> build/bdist.linux-loongarch64/wheel/./wxtbx creating build/bdist.linux-loongarch64/wheel/wxtbx/command_line copying build/lib/wxtbx/command_line/plan_sad_experiment.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/loggraph.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/pdb_editor.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/inspect_r_free_flags.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/plot_anomalous_scattering.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/xtriage.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/anomalous_differences_histogram.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/b_plot.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/wxpython.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/show_file_info.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/pdb_statistics.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/windows.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/icons.py -> build/bdist.linux-loongarch64/wheel/./wxtbx creating build/bdist.linux-loongarch64/wheel/wxtbx/regression copying build/lib/wxtbx/regression/tst_process_control.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/regression copying build/lib/wxtbx/regression/tst_headless_construct.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/regression copying build/lib/wxtbx/regression/_warnings.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/regression copying build/lib/wxtbx/regression/tst_b_plot.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/regression copying build/lib/wxtbx/regression/_headless_construct_cases.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/regression copying build/lib/wxtbx/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/regression copying build/lib/wxtbx/regression/tst_imports.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/regression copying build/lib/wxtbx/pdb_editor.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/anomalous_scattering.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/misc_dialogs.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/metallicbutton.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/xtriage.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/browser.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/polygon.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/b_plot.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/sequence_view.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/tables.py -> build/bdist.linux-loongarch64/wheel/./wxtbx creating build/bdist.linux-loongarch64/wheel/wxtbx/plots copying build/lib/wxtbx/plots/molprobity.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/plots copying build/lib/wxtbx/plots/emringer.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/plots copying build/lib/wxtbx/plots/__init__.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/plots copying build/lib/wxtbx/monitor.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/path_dialogs.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/app.py -> build/bdist.linux-loongarch64/wheel/./wxtbx creating build/bdist.linux-loongarch64/wheel/wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/choice_multi.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/boolctrl.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/tribool.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/tree.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/choice.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/strctrl.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/floats.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/misc_ctrls.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/floatctrl.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/symop.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/strings.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/numbers.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/space_group.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/__init__.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/ints.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/path.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/array_label.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/text_base.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/intctrl.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/unit_cell.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/simple_dialogs.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/symmetry_dialog.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/adp_statistics.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/process_control.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/errors.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/heavy_atoms.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/custom_restraints.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/qstat_view.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/ensemble_validation.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/polygon_db_viewer.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/utils.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./wxtbx creating build/bdist.linux-loongarch64/wheel/cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/xray copying build/lib/cctbx/xray/scatterer.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray copying build/lib/cctbx/xray/target_functors.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray creating build/bdist.linux-loongarch64/wheel/cctbx/xray/targets copying build/lib/cctbx/xray/targets/r1.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/targets copying build/lib/cctbx/xray/targets/tst_shelxl_wght_ls.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/targets copying build/lib/cctbx/xray/targets/tst_r1.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/targets copying build/lib/cctbx/xray/targets/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/targets copying build/lib/cctbx/xray/minimization.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray copying build/lib/cctbx/xray/structure.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray copying build/lib/cctbx/xray/ext.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray copying build/lib/cctbx/xray/weighting_schemes.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray copying build/lib/cctbx/xray/observation_types.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray creating build/bdist.linux-loongarch64/wheel/cctbx/xray/observations copying build/lib/cctbx/xray/observations/tst_observations.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/observations copying build/lib/cctbx/xray/observations/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/observations copying build/lib/cctbx/xray/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray creating build/bdist.linux-loongarch64/wheel/cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/from_scatterers_direct_parallel.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/manager.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/from_scatterers.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradient_flags.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/from_scatterers_fft.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/from_scatterers_direct.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradients_base.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/algorithm.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/global_counters.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradients_direct.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/misc.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradients_fft.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradients.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors creating build/bdist.linux-loongarch64/wheel/cctbx/masks copying build/lib/cctbx/masks/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/masks copying build/lib/cctbx/r_free_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/command_line copying build/lib/cctbx/command_line/structure_factor_timings.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/subgroups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/samosa_scale.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/space_group_info.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/cod_select_and_pickle.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/cctbx_test_nightly.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/brehm_diederichs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/samosa_join.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/euclidean_model_matching.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/precession_view.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/version.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/qscore.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/segment_and_split_map.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/wavelength_units.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/auto_sharpen.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/find_reticular_twin_laws.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/diffuse.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/eltbx.show_fp_fdp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/form_factor_query.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line creating build/bdist.linux-loongarch64/wheel/cctbx/sgtbx copying build/lib/cctbx/sgtbx/sys_abs_equiv.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/sub_lattice_tools.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/plane_groups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/reticular_pg_tools.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/subgroups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/harker.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/cosets.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx creating build/bdist.linux-loongarch64/wheel/cctbx/sgtbx/direct_space_asu creating build/bdist.linux-loongarch64/wheel/cctbx/sgtbx/direct_space_asu/proto copying build/lib/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu/proto copying build/lib/cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu/proto copying build/lib/cctbx/sgtbx/direct_space_asu/proto/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu/proto copying build/lib/cctbx/sgtbx/direct_space_asu/short_cuts.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/check_redundancies.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/reference_table.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/cut_plane.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/facet_analysis.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/rational_matrices_point_groups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/show_cosets.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/bravais_types.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/lattice_symmetry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/literal_description.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/reticular_twin_laws.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/pointgroup_tools.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/symbol_confidence.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx creating build/bdist.linux-loongarch64/wheel/cctbx/covariance copying build/lib/cctbx/covariance/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/covariance creating build/bdist.linux-loongarch64/wheel/cctbx/geometry copying build/lib/cctbx/geometry/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry creating build/bdist.linux-loongarch64/wheel/cctbx/maptbx copying build/lib/cctbx/maptbx/refine_scales_errors.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_qscore.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_resolution_from_map_and_model.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/real_space_refinement_simple.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/resolution_from_map_and_model.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/servalcat_difference_map.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/box.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx creating build/bdist.linux-loongarch64/wheel/cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_qmap_02.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_example.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_vrm.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/compute_tables.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/bcr.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/qmap.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_vrm2.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_two_atoms.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_adp_refine.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_table.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/tst_mask.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_asymmetric_map.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_interpolation_2.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_real_space_refinement_simple.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/minimization.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/fsc_curve.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/prepare_map_for_docking.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_target_and_gradients.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/prepare_map_for_refinement.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_get_percentile_cutoffs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_MapPeakLocator.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/qscore.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_atom_curves.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_map_peak_3d_as_2d.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/segment_and_split_map.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_ccp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/mask.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_bcr.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/auto_sharpen.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/refine_sharpening.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/mem.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/map_symmetry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_interpolation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_loft.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_peak_volume_estimate.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx creating build/bdist.linux-loongarch64/wheel/cctbx/regression copying build/lib/cctbx/regression/tst_geometry_restraints_lbfgs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_crystal_asu_clusters.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_tidy_pickling.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_site_constraints.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_krivy_gruber.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_french_wilson.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_minimization.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_wavelength_units.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_special_op_simplifier.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_merge_equivalents.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_prepare_map_for_docking.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_show_cosets.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_web_change_basis.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_minimization_failure.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_create_models_or_maps.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_double_step_filtration.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_adp_constraints_cartesian.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_fast_gradients.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_f_model.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_adp_constraints.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_pair_asu_table.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_geometry_restraints.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_target_functors.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_grm_modifications_rm.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_coordination_sequences.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_expand_to_p1.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_crystal.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_mem_2.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_twin_target.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_statistics_graphs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sf_low_res_accuracy.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_find_best_cell.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_maptbx_structure_factors.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_data_manipulation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_subgroups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_reflection_statistics.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_connectivity_allsym.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sphericity.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_connectivity.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sampled_model_density.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_geometry_restraints_2.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_amplitude_normalisation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_maptbx_mask.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_statistics.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_fourier_transform_real_part_at_x.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_map_is_periodic.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_harker.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_diffuse.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_wilson_plot.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_pointgroup_tools.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_crystal_close_packing.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_weighting_schemes.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_loc_res.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_grm_pickling.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_r_free_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_grm_modifications.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_mem.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_denominators.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_fast_nv1995.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_adp_aniso_restraints.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_math_module.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_direct_space_asu.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_triplet_generator.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_lookup_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_match_bijvoet_mates.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_reciprocal_space_asu.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_fcalc_fft_stability.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_map_weights_for_symmetry_summation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_maptbx_box.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_emma.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_niggli_reduction_cpp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_direct_scaling.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_lattice_symmetry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_refine_xray_curvs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_change_basis.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_fft_map.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_grouped_data.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression creating build/bdist.linux-loongarch64/wheel/cctbx/web copying build/lib/cctbx/web/dispatcher.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web creating build/bdist.linux-loongarch64/wheel/cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/jvx.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/jv_asu.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/guide_to_notation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/jv_index.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/web_links.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/change_setting.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/iotbx_cif_validate.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/frac_cart.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/explore_symmetry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/libtbx_help.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/change_hand.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/browse_settings.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/shelx.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/structure_factors_pdb.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/phase_o_phrenia.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/emma.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/multiple_cell.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/lattice_symmetry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/all_axes.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/wyckoff.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/cgi_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/replay.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/structure_factors.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/io_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/change_basis.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web creating build/bdist.linux-loongarch64/wheel/cctbx/development copying build/lib/cctbx/development/debug_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/run_shelx.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/approx_amplitude_vs_resolution.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/make_cns_input.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/tst_cns_epsilon.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/make_settings.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/fmt_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/github.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/electron_density_sampling.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/create_models_or_maps.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/cns_density_modification.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/random_structure.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/tst_cns_hl.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/direct_or_fft.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/run_shelx76.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/space_group_option_parser.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/structure_factor_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/translation_search.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/macro_mol copying build/lib/cctbx/macro_mol/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/macro_mol copying build/lib/cctbx/macro_mol/rotation_parameters.py -> build/bdist.linux-loongarch64/wheel/./cctbx/macro_mol creating build/bdist.linux-loongarch64/wheel/cctbx/omz copying build/lib/cctbx/omz/eval_iso_vs_refined.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/tst_bfgs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/cod_refine.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/cod_select_and_pickle.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/dev.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/bfgs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/pdb_dev.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/tst_dev.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/tardy_adaptor.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/cif_refine.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz creating build/bdist.linux-loongarch64/wheel/cctbx/examples copying build/lib/cctbx/examples/space_group_matrices.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/g_exp_i_alpha_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/site_symmetry_constraints.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/list_non_principal_continuous_shifts.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_phase_o_phrenia.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/adp_symmetry_constraints.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/unit_cell_minimizers.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/hirshfeld_test.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/sub_group_graph.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/random_puckers.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples creating build/bdist.linux-loongarch64/wheel/cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/u_star_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/site_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/sites_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_derivatives_4.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/fft_map_electron_density_around_atom.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/miller_transform.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_structure_factor_derivatives_4.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/view_fft_map.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/cr2o3_consistency_checks.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/structure_factor_derivatives_3.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/neutron_structure_factors.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_g_exp_i_alpha_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/f_model_example.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/find_sys_abs_equiv_space_groups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/miller_common_sets.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/change_hand_p31.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/cr2o3_primitive_cell.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/ccp4_map.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/site_symmetry_table.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_structure_factor_derivatives_3.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/g_exp_i_partial_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/lebedev_2005_perturbation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/unit_cell_refinement.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/analyze_adp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_space_subgroups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/random_f_calc.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_structure_factor_derivatives_2.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/phase_o_phrenia.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/find_distances_using_cpp_objects.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/exp_i_alpha_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/symops_530.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/all_axes.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/convert_ccp4_symop_lib.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/map_skewness.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/reduced_cell_two_folds.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/location_part.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/le_page_1982_vs_lebedev_2005.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/quartz_structure.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/space_subgroups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/steve_collins.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/maximum_subgroups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/trigonal_r_vs_tetragonal_i.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_exp_i_alpha_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/structure_factor_derivatives_2.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/structure_factor_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/getting_started.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples creating build/bdist.linux-loongarch64/wheel/cctbx/examples/merging copying build/lib/cctbx/examples/merging/test1.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/test_levenberg_sparse.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/data_utilities.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/sigma_correction.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/task4.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging creating build/bdist.linux-loongarch64/wheel/cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/samosa/join.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/samosa/per_lattice_postrefinement.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/samosa/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/samosa/scale.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/show_results.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/tst_permutations.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/test_cc_half.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/data_subset.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/tst_structure_factor_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/euclidean_model_matching.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/adptbx.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/dmtbx.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/eltbx copying build/lib/cctbx/eltbx/attenuation_coefficient.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/e_scattering.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/henke.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/van_der_waals_radii.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx creating build/bdist.linux-loongarch64/wheel/cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/e_scattering_plots.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_approx.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/kissel_io.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_kissel.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_fits.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/rez_rez_grant.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/combine_fits.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/kissel_fits.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_cross_validation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_section61_io.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/create_n_gaussian_raw_cpp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/format_gaussian_fits.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/hydrogen_plots.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/distance_based_connectivity.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx creating build/bdist.linux-loongarch64/wheel/cctbx/eltbx/xray_scattering copying build/lib/cctbx/eltbx/xray_scattering/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/xray_scattering copying build/lib/cctbx/eltbx/read_custom_scattering_dict.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/chemical_elements.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/fp_fdp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/sasaki.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/icsd_radii.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/wavelengths.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/gaussian_fit.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/tiny_pse.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/covalent_radii.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/neutron.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/formula.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/run_examples.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/math_module.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/french_wilson.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/neutron copying build/lib/cctbx/neutron/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/neutron copying build/lib/cctbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/miller copying build/lib/cctbx/miller/tst_reindexing.py -> build/bdist.linux-loongarch64/wheel/./cctbx/miller copying build/lib/cctbx/miller/reindexing.py -> build/bdist.linux-loongarch64/wheel/./cctbx/miller copying build/lib/cctbx/miller/tst_map_to_asu_isym.py -> build/bdist.linux-loongarch64/wheel/./cctbx/miller copying build/lib/cctbx/miller/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/miller copying build/lib/cctbx/miller/display.py -> build/bdist.linux-loongarch64/wheel/./cctbx/miller copying build/lib/cctbx/anharmonic.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/statistics.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/symmetry_search.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/crystal copying build/lib/cctbx/crystal/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/burzlaff_zimmermann_dewolff.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/direct_space_asu.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/tst_distance_based_connectivity.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/distance_based_connectivity.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/super_cell.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/coordination_sequences.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/tst_super_cell.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/close_packing.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/reindex.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/find_best_cell.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal creating build/bdist.linux-loongarch64/wheel/cctbx/adp_restraints copying build/lib/cctbx/adp_restraints/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./cctbx/adp_restraints copying build/lib/cctbx/adp_restraints/energies.py -> build/bdist.linux-loongarch64/wheel/./cctbx/adp_restraints copying build/lib/cctbx/adp_restraints/flags.py -> build/bdist.linux-loongarch64/wheel/./cctbx/adp_restraints copying build/lib/cctbx/adp_restraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/adp_restraints creating build/bdist.linux-loongarch64/wheel/cctbx/array_family copying build/lib/cctbx/array_family/flex.py -> build/bdist.linux-loongarch64/wheel/./cctbx/array_family copying build/lib/cctbx/array_family/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/array_family creating build/bdist.linux-loongarch64/wheel/cctbx/source_generators creating build/bdist.linux-loongarch64/wheel/cctbx/source_generators/eltbx copying build/lib/cctbx/source_generators/eltbx/generate_sasaki_cpp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/source_generators/eltbx copying build/lib/cctbx/source_generators/eltbx/generate_henke_cpp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/source_generators/eltbx copying build/lib/cctbx/source_generators/eltbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/source_generators/eltbx copying build/lib/cctbx/source_generators/flex_fwd_h.py -> build/bdist.linux-loongarch64/wheel/./cctbx/source_generators copying build/lib/cctbx/source_generators/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/source_generators creating build/bdist.linux-loongarch64/wheel/cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/lbfgs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/manager.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/linking_class.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/standard_cif_links.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/auto_linking_types.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_motif.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/base_geometry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/process_nonbonded_proxies.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/energies.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/flags.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_proxy_registry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_angle_derivs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/distance_least_squares.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/multipolar.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/uctbx copying build/lib/cctbx/uctbx/reduction_base.py -> build/bdist.linux-loongarch64/wheel/./cctbx/uctbx creating build/bdist.linux-loongarch64/wheel/cctbx/uctbx/determine_unit_cell copying build/lib/cctbx/uctbx/determine_unit_cell/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/uctbx/determine_unit_cell copying build/lib/cctbx/uctbx/krivy_gruber_1976.py -> build/bdist.linux-loongarch64/wheel/./cctbx/uctbx copying build/lib/cctbx/uctbx/gruber_1973_table_1.py -> build/bdist.linux-loongarch64/wheel/./cctbx/uctbx copying build/lib/cctbx/uctbx/gruber_1973.py -> build/bdist.linux-loongarch64/wheel/./cctbx/uctbx copying build/lib/cctbx/uctbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/uctbx creating build/bdist.linux-loongarch64/wheel/cctbx/merging copying build/lib/cctbx/merging/brehm_diederichs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/merging copying build/lib/cctbx/merging/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/merging copying build/lib/cctbx/crystal_orientation.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/iotbx copying build/lib/iotbx/map_model_manager.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/crystal_symmetry_from_any.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/fullprof copying build/lib/iotbx/fullprof/write_pcr.py -> build/bdist.linux-loongarch64/wheel/./iotbx/fullprof copying build/lib/iotbx/fullprof/read_pcr.py -> build/bdist.linux-loongarch64/wheel/./iotbx/fullprof copying build/lib/iotbx/fullprof/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/fullprof copying build/lib/iotbx/ranges.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/cif copying build/lib/iotbx/cif/cod_tools.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/model.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/restraints.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/builders.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/geometry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/citations.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/errors.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/restraint_file_merge.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/validation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/crystal_symmetry_from_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/merging_statistics.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/mtz copying build/lib/iotbx/mtz/tst_unmerged.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst_miller_dict.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst_dano.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst_extract_from_symmetry_lib.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/extract_from_symmetry_lib.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/crystal_symmetry_from_mtz.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/phases.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/dsn6 copying build/lib/iotbx/dsn6/tst.py -> build/bdist.linux-loongarch64/wheel/./iotbx/dsn6 copying build/lib/iotbx/dsn6/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/dsn6 copying build/lib/iotbx/csv_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/scalepack copying build/lib/iotbx/scalepack/merge.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/no_merge_original_index.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/crystal_symmetry_from_hkl.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/space_group_dictionary.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/tst_merge.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/tst_no_merge_original_index.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/option_parser.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/command_line copying build/lib/iotbx/command_line/crystal_symmetry_from_any.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/show_distances.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.as_xray_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/merging_statistics.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cns.sdb_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/r_free_flags_accumulation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/sort_atoms.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.hierarchy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_labels_diff.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.superpose_atoms_by_name.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cif.as_miller_arrays.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/blast_pdb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/flip_symmetric_amino_acids.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.box_around_molecule.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cif.as_xray_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_labels_comparison.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cns.transfer_crystal_symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/mtz_as_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.link_as_geometry_restraints_edits.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reflection_file_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.join_fragment_files.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.insert_scale_records.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/mtrix_reconstruction.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/build_phil_cache.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/get_pubmed_citation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cbf_read.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/show_systematic_absences.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/unique_with_biomt.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_split_models.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_as_fasta.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/dano_as_amplitudes.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/csv_as_mtz.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/export_scalepack_unmerged.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_show_connectivity.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cif_as_pdb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/biomt_reconstruction.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reflection_file_editor.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_cif_conversion.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/emma.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/dtrek.to_cns.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reflection_statistics.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_get_citation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/explore_metric_symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/lattice_symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_add_conformations.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/r_free_flags_as_cns.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/french_wilson.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/file_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/shelx.dump_as_python.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.b_factor_stats.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/r_free_flags_completion_simple.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/shelx.as_xray_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/mtz.dump.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/simple_map_coefficients.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/phil.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/patterson_map.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/poscar_as_xray_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/shelx.as_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.superpose_centers_of_mass.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/split_data_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cif.validate.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/symmetry_search.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reindex.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reflection_file_converter.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/xplor.map.show_summary.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cns.reflection_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/distance_least_squares.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/effective_resolution.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cns_as_mtz.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_as_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.print_sequence.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/detector_image_as_png.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_remediator.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line creating build/bdist.linux-loongarch64/wheel/iotbx/file_io copying build/lib/iotbx/file_io/reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/file_io copying build/lib/iotbx/file_io/_maps.py -> build/bdist.linux-loongarch64/wheel/./iotbx/file_io copying build/lib/iotbx/file_io/detection.py -> build/bdist.linux-loongarch64/wheel/./iotbx/file_io copying build/lib/iotbx/file_io/text_detection.py -> build/bdist.linux-loongarch64/wheel/./iotbx/file_io copying build/lib/iotbx/file_io/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/file_io creating build/bdist.linux-loongarch64/wheel/iotbx/data_manager copying build/lib/iotbx/data_manager/yaml.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/sequence.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/model.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/json.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/real_map.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/ncs_spec.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/common.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/miller_array.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/map_coefficients.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/restraint.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/phil.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/table_one.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/regression copying build/lib/iotbx/regression/tst_all_chain_ids.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_manager_wrapping.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_fetch.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_simple_parser.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_resname_2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_file_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_cli_parser.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_show_systematic_absences.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_link_records.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_miller_sort_asu.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_bioinformatics.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_extract_xtal_data.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_poscar.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reindex.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_lattice_symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_cif_as_pdb_1atom.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_csv_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_crystal_symmetry_from_any.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdbx_mmcif_tutorial.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_manager.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_restraints_merge.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_split_models.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_tls_from_map_8.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_tools.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mmcif_input.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_cif_1.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_model_sharpening_5.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_generate_n_char_string.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_merging_statistics.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_resname_4.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_manager_2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_resname_3.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_cif_inputs.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_xray_scale.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression creating build/bdist.linux-loongarch64/wheel/iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_search_shortcut_1.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_without_validation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_input.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_reordered_chains.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_search_broken_chain.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_user_selections.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_input_preserves_iseqs.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_search_ligs.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/tst_simple_map_coefficients.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reflection_statistics.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_as_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_cif_cells.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mmcif_segids.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_as_fasta.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_export_scalepack_unmerged.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mmcif_multimodel.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_atom_selections_10k.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_sort_atoms.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_pdb_v3.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mmcif_to_from_hierarchy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_add_conformations.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_id_str.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_occupancies_rounding.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_box_around_molecule.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_split_data_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reflection_file_editor.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_phil.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_wildcard.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_chain_ids_1.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_file_io.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mrc_io.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_patterson.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_local_resolution_10.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_external_sharpening_7.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_resname_1.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_call_consistency.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_data_manager.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_3.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_4.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_group_rounding.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_examples.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reflection_file_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_phases.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reflection_file_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_text_detection.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mtz_as_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_altlocs.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_data_plots.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_copy_select.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_selected_hierarchy_flip.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/pdb copying build/lib/iotbx/pdb/tst_mmcif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/nucleic_acid_codes.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_hierarchy_atom_sort.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/crystal_symmetry_from_pdb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_atom_selection_string.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_read_mtrix_records_from_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/fetch.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_hierarchy_flip_symmetric_2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/rcsb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/extract_rfactors_resolutions_sigma.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_secondary_structure_2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/amino_acid_codes.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_rna_dna_atom_names.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/atom_name_interpretation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/experiment_type.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_atom_name_interpretation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/mmcif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/hybrid_36.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/modified_aa_names.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_input_pickling.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/records.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/remark_290_interpretation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/secondary_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/aa_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/cryst1_interpretation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/web_service_api.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/download.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_hierarchy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/xray_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/rna_dna_detection.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/misc_records_output.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/remark_2_interpretation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/forward_compatible_pdb_cif_conversion.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/modified_rna_dna_names.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_tls.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/atom_selection.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/remark_3_interpretation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_atom_selection.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_mmcif_hierarchy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/pdbe.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_secondary_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/pdb_v3_cif_conversion.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb creating build/bdist.linux-loongarch64/wheel/iotbx/pdb/remediation copying build/lib/iotbx/pdb/remediation/remediator.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb/remediation copying build/lib/iotbx/pdb/remediation/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb/remediation copying build/lib/iotbx/pdb/remediation/tst_remediator.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb/remediation copying build/lib/iotbx/pdb/tst_pdb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/hierarchy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_hierarchy_flip_symmetric.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_mmcif_hierarchy_2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb creating build/bdist.linux-loongarch64/wheel/iotbx/xds copying build/lib/iotbx/xds/xds_cbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/gain_cbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/xds_inp.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/xparm.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/integrate_hkl.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/crystal_symmetry_from_hkl.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/spot_xds.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/read_ascii.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/geometry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/blank_cbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/correction.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds creating build/bdist.linux-loongarch64/wheel/iotbx/detectors copying build/lib/iotbx/detectors/raxis_nonsquare.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/tst_py_cbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/tst_detectors.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/generic_detector.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/pilatus_minicbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/edf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/cspad_detector_formats.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/image_from_http_request.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/raxis.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/raxisbase.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/bruker.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/adsc.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/npy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/active_area_filter.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/url_support.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/macscience.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/test_raxis2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/detectorbase.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/beam_center_convention.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/noir.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/tst_adsc.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/mar.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/tst_debug_write.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/saturn.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors creating build/bdist.linux-loongarch64/wheel/iotbx/detectors/context copying build/lib/iotbx/detectors/context/spot_xy_convention.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/config_detector.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/camera_convention.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/endstation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/endstation_max_iv_trial.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/adsc_module.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/eiger_minicbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/eiger.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors creating build/bdist.linux-loongarch64/wheel/iotbx/detectors/util copying build/lib/iotbx/detectors/util/filters.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/util copying build/lib/iotbx/detectors/util/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/util copying build/lib/iotbx/detectors/tst_cbf_comp_read_meth.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/dtrek.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/cbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/hamamatsu.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/pilatus_slice.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/marIP.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/test_mar.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/adsc_minicbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/map_manager.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/map_tools.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/PrettyPrint copying build/lib/iotbx/PrettyPrint/tables.py -> build/bdist.linux-loongarch64/wheel/./iotbx/PrettyPrint copying build/lib/iotbx/PrettyPrint/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/PrettyPrint creating build/bdist.linux-loongarch64/wheel/iotbx/kriber copying build/lib/iotbx/kriber/strudat.py -> build/bdist.linux-loongarch64/wheel/./iotbx/kriber copying build/lib/iotbx/kriber/tst_strudat.py -> build/bdist.linux-loongarch64/wheel/./iotbx/kriber copying build/lib/iotbx/kriber/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/kriber creating build/bdist.linux-loongarch64/wheel/iotbx/ccp4_map copying build/lib/iotbx/ccp4_map/tst.py -> build/bdist.linux-loongarch64/wheel/./iotbx/ccp4_map copying build/lib/iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py -> build/bdist.linux-loongarch64/wheel/./iotbx/ccp4_map copying build/lib/iotbx/ccp4_map/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/ccp4_map copying build/lib/iotbx/simple_parser.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/xplor copying build/lib/iotbx/xplor/tst_xplormap.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xplor copying build/lib/iotbx/xplor/ext.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xplor copying build/lib/iotbx/xplor/map.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xplor copying build/lib/iotbx/xplor/crystal_symmetry_from_map.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xplor copying build/lib/iotbx/xplor/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xplor copying build/lib/iotbx/reflection_file_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/mtrix_biomt.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/reflection_file_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/examples copying build/lib/iotbx/examples/libtbx_phil_examples.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/prepare_model_for_rsr.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_shake.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/recalculate_phenix_refine_r_factors.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/direct_methods_light.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_split_chains.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdbx_mmcif_tutorial.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/tst_mtz_free_flipper.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/mtz_convert_free_to_work.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_tardy_conf_sampling_simple.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/mtz_free_flipper.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_symmetry_copies.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_hierarchy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples creating build/bdist.linux-loongarch64/wheel/iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/tst.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v3_better.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v2_simple.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/shelx_latt_sym_to_space_group_symbol.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_to_map_simple.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples creating build/bdist.linux-loongarch64/wheel/iotbx/dtrek copying build/lib/iotbx/dtrek/reflnlist_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/dtrek copying build/lib/iotbx/dtrek/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/dtrek copying build/lib/iotbx/dtrek/crystal_symmetry_from_ref.py -> build/bdist.linux-loongarch64/wheel/./iotbx/dtrek copying build/lib/iotbx/dtrek/dtrek_symmetry_dict.py -> build/bdist.linux-loongarch64/wheel/./iotbx/dtrek copying build/lib/iotbx/extract_xtal_data.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/ebi_wu_blast_xml.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/pdb_info.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/homologues.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/xmlbuild.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/ncbi_blast_xml.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/pubmed.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/alignment_as_hsearch.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/local_blast.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics creating build/bdist.linux-loongarch64/wheel/iotbx/ncs copying build/lib/iotbx/ncs/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/ncs copying build/lib/iotbx/wildcard.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/cns copying build/lib/iotbx/cns/crystal_symmetry_from_inp.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/crystal_symmetry_from_sdb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/crystal_symmetry_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/sdb_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/sdb_writer.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/index_fobs_sigma_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/miller_array.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/reflection_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/tst_cns.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/space_group_symbols.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/xray_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/pdb_remarks.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/pymol.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/builders.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/logfiles.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/format.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/cif_mtz_data_labels.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/cli_parser.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/reflection_file_editor.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/programs copying build/lib/iotbx/programs/unique_with_biomt.py -> build/bdist.linux-loongarch64/wheel/./iotbx/programs copying build/lib/iotbx/programs/box_around_molecule.py -> build/bdist.linux-loongarch64/wheel/./iotbx/programs copying build/lib/iotbx/programs/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/programs copying build/lib/iotbx/programs/split_data_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/programs creating build/bdist.linux-loongarch64/wheel/iotbx/solve copying build/lib/iotbx/solve/crystal_symmetry_from_inp.py -> build/bdist.linux-loongarch64/wheel/./iotbx/solve copying build/lib/iotbx/solve/fpfm_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/solve copying build/lib/iotbx/solve/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/solve copying build/lib/iotbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/shelx copying build/lib/iotbx/shelx/parsers.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/hklf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tst_lex_parse_build.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tokens.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/fcf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tst_hklf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/writer.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tst_fvar_encoding.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/lexer.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tst_writer.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/write_ins.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/errors.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/crystal_symmetry_from_ins.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/fvar_encoding.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/file_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/builders_depending_on_smtbx.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/mrcfile copying build/lib/iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mrcfile copying build/lib/iotbx/mrcfile/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mrcfile copying build/lib/iotbx/phil.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/data_plots.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/poscar.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/reflection_file_converter.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/gui_tools copying build/lib/iotbx/gui_tools/tst.py -> build/bdist.linux-loongarch64/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/cif_conversions.py -> build/bdist.linux-loongarch64/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/import_data_and_flags.py -> build/bdist.linux-loongarch64/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/models.py -> build/bdist.linux-loongarch64/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/reflections.py -> build/bdist.linux-loongarch64/wheel/./iotbx/gui_tools copying build/lib/iotbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/annlib_adaptbx creating build/bdist.linux-loongarch64/wheel/annlib_adaptbx/annlib_adaptbx copying build/lib/annlib_adaptbx/annlib_adaptbx/self_match.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx/annlib_adaptbx copying build/lib/annlib_adaptbx/annlib_adaptbx/sample.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx/annlib_adaptbx copying build/lib/annlib_adaptbx/annlib_adaptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx/annlib_adaptbx copying build/lib/annlib_adaptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx creating build/bdist.linux-loongarch64/wheel/annlib_adaptbx/source_generators copying build/lib/annlib_adaptbx/source_generators/generate_all.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx/source_generators copying build/lib/annlib_adaptbx/source_generators/__init__.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx/source_generators copying build/lib/annlib_adaptbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx creating build/bdist.linux-loongarch64/wheel/spotfinder creating build/bdist.linux-loongarch64/wheel/spotfinder/applications copying build/lib/spotfinder/applications/practical_heuristics.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications copying build/lib/spotfinder/applications/stats_distl.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications copying build/lib/spotfinder/applications/image_viewer.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications creating build/bdist.linux-loongarch64/wheel/spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/method2_resolution.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/ice2.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/spotreporter.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/ice_nztt.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/heuristic_tbx creating build/bdist.linux-loongarch64/wheel/spotfinder/applications/xfel copying build/lib/spotfinder/applications/xfel/cxi_run3.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/xfel copying build/lib/spotfinder/applications/xfel/cxi_phil.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/xfel copying build/lib/spotfinder/applications/xfel/correction_vector_plot.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/xfel copying build/lib/spotfinder/applications/xfel/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/xfel copying build/lib/spotfinder/applications/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications copying build/lib/spotfinder/applications/wrappers.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications copying build/lib/spotfinder/applications/signal_strength.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications creating build/bdist.linux-loongarch64/wheel/spotfinder/servers copying build/lib/spotfinder/servers/specific_client_example.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/general_client_example.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/thin_client.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/spotfinder_server_read_file.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/apache.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/bcsb_client_example.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/multipart_encoder.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/apache_bcsb.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/mp_spotfinder_server_is_alive.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/mp_spotfinder_server_read_file.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/pilatus_client.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/adsc_client.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/spotfinder_server_client_push.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/apache_utils.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/apache_dials.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers creating build/bdist.linux-loongarch64/wheel/spotfinder/command_line copying build/lib/spotfinder/command_line/thin_client.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/image_viewer.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/mp_spotfinder_server_read_file.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/find_active_area.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/sweep_strength.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/signal_strength.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/exception.py -> build/bdist.linux-loongarch64/wheel/./spotfinder creating build/bdist.linux-loongarch64/wheel/spotfinder/dxtbx_toolbox copying build/lib/spotfinder/dxtbx_toolbox/practical_heuristics.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/dxtbx_toolbox copying build/lib/spotfinder/dxtbx_toolbox/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/dxtbx_toolbox creating build/bdist.linux-loongarch64/wheel/spotfinder/core_toolbox copying build/lib/spotfinder/core_toolbox/close_spots_detail.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/core_toolbox copying build/lib/spotfinder/core_toolbox/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/core_toolbox creating build/bdist.linux-loongarch64/wheel/spotfinder/diffraction copying build/lib/spotfinder/diffraction/imagefiles.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/diffraction copying build/lib/spotfinder/diffraction/geometry.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/diffraction copying build/lib/spotfinder/diffraction/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/diffraction copying build/lib/spotfinder/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder creating build/bdist.linux-loongarch64/wheel/spotfinder/math_support copying build/lib/spotfinder/math_support/sphere_formulae.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/math_support copying build/lib/spotfinder/math_support/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/math_support creating build/bdist.linux-loongarch64/wheel/spotfinder/array_family copying build/lib/spotfinder/array_family/flex.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/array_family copying build/lib/spotfinder/array_family/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/array_family copying build/lib/spotfinder/run_tests.py -> build/bdist.linux-loongarch64/wheel/./spotfinder creating build/bdist.linux-loongarch64/wheel/rstbx creating build/bdist.linux-loongarch64/wheel/rstbx/apps copying build/lib/rstbx/apps/spot_markup.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps creating build/bdist.linux-loongarch64/wheel/rstbx/apps/stills copying build/lib/rstbx/apps/stills/dials_refinement_preceding_integration.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/deltapsi_refinement_preceding_integration.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/util.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/simple_integration.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/stills_integration.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/dual_resolution_helpers.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps copying build/lib/rstbx/apps/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps copying build/lib/rstbx/apps/slip_helpers.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps creating build/bdist.linux-loongarch64/wheel/rstbx/simulation copying build/lib/rstbx/simulation/constants.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simulation copying build/lib/rstbx/simulation/sim_pdf.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simulation copying build/lib/rstbx/simulation/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simulation copying build/lib/rstbx/simulation/tst_xfel1_simple.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simulation copying build/lib/rstbx/simulation/sim_utils.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simulation creating build/bdist.linux-loongarch64/wheel/rstbx/phil copying build/lib/rstbx/phil/scope.py -> build/bdist.linux-loongarch64/wheel/./rstbx/phil copying build/lib/rstbx/phil/phil_preferences.py -> build/bdist.linux-loongarch64/wheel/./rstbx/phil copying build/lib/rstbx/phil/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/phil copying build/lib/rstbx/phil/preferences.py -> build/bdist.linux-loongarch64/wheel/./rstbx/phil creating build/bdist.linux-loongarch64/wheel/rstbx/outlier_spots copying build/lib/rstbx/outlier_spots/fit_distribution.py -> build/bdist.linux-loongarch64/wheel/./rstbx/outlier_spots copying build/lib/rstbx/outlier_spots/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/outlier_spots creating build/bdist.linux-loongarch64/wheel/rstbx/command_line copying build/lib/rstbx/command_line/example_viewer.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/index.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/simage.explore_completeness.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/simage.create.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/slip_viewer.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/viewer.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/simage.solver.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/simage.wx_display.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line creating build/bdist.linux-loongarch64/wheel/rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/ring_frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/pyslip.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/example_frame_plugin_hidden.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/tile_generation.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/score_frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/slip_viewer_image_factory.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/uc_frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/slip_display.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/calibration_frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer creating build/bdist.linux-loongarch64/wheel/rstbx/detectors copying build/lib/rstbx/detectors/silicon.py -> build/bdist.linux-loongarch64/wheel/./rstbx/detectors copying build/lib/rstbx/detectors/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/detectors creating build/bdist.linux-loongarch64/wheel/rstbx/symmetry copying build/lib/rstbx/symmetry/sgtbx_adaptor.py -> build/bdist.linux-loongarch64/wheel/./rstbx/symmetry creating build/bdist.linux-loongarch64/wheel/rstbx/symmetry/constraints copying build/lib/rstbx/symmetry/constraints/parameter_reduction.py -> build/bdist.linux-loongarch64/wheel/./rstbx/symmetry/constraints copying build/lib/rstbx/symmetry/constraints/g_gradients.py -> build/bdist.linux-loongarch64/wheel/./rstbx/symmetry/constraints copying build/lib/rstbx/symmetry/constraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/symmetry/constraints copying build/lib/rstbx/symmetry/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/symmetry copying build/lib/rstbx/symmetry/subgroup.py -> build/bdist.linux-loongarch64/wheel/./rstbx/symmetry creating build/bdist.linux-loongarch64/wheel/rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2_validate.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2_positions.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2a.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2_positions_idx.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/compare_mosflm_xds.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx creating build/bdist.linux-loongarch64/wheel/rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/detector_model/detector.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/detector_model/instrument_specifics.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/detector_model/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/detector_model/tst_detector_model.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/ersatz_misset.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx creating build/bdist.linux-loongarch64/wheel/rstbx/dps_core copying build/lib/rstbx/dps_core/cell_assessment.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/tst_iotbx_converter.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/basis_choice.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/lepage.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/zuoreduction.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/constrainment.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/sampling.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core creating build/bdist.linux-loongarch64/wheel/rstbx/indexing_api copying build/lib/rstbx/indexing_api/outlier_procedure.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/lattice.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/nearest_neighbor.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/force_cell.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/basis_choice.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/tools.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/test_dps.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/outlier_detection.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/sampling.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api creating build/bdist.linux-loongarch64/wheel/rstbx/indexing copying build/lib/rstbx/indexing/tst_auto_monoscan.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing copying build/lib/rstbx/indexing/do_index.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing copying build/lib/rstbx/indexing/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing copying build/lib/rstbx/indexing/tst_dataset1.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing creating build/bdist.linux-loongarch64/wheel/rstbx/new_horizons copying build/lib/rstbx/new_horizons/index.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/speckfinder.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/stats_index.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/spot_shape.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/pixel_spread.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/oscillation_shots.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons creating build/bdist.linux-loongarch64/wheel/rstbx/diffraction creating build/bdist.linux-loongarch64/wheel/rstbx/diffraction/fastbragg copying build/lib/rstbx/diffraction/fastbragg/tst_bragg_minimal.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction/fastbragg copying build/lib/rstbx/diffraction/fastbragg/tst_utils_clustering.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction/fastbragg copying build/lib/rstbx/diffraction/fastbragg/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction/fastbragg copying build/lib/rstbx/diffraction/tst_ewald_sphere.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction copying build/lib/rstbx/diffraction/tst_partial_derivatives.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction copying build/lib/rstbx/diffraction/tst_predict.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction copying build/lib/rstbx/diffraction/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction copying build/lib/rstbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx creating build/bdist.linux-loongarch64/wheel/rstbx/simage copying build/lib/rstbx/simage/run_spotfinder.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/refine_uc_cr.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/integrate_crude.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/tst.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/run_labelit_index.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/explore_completeness.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/create.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/solver.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/wx_display.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage creating build/bdist.linux-loongarch64/wheel/rstbx/viewer copying build/lib/rstbx/viewer/results_base.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/dataset.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/processing.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/tst.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/drivers.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/pixels3d.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/calibration.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/controls.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/spotfinder_wrap.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/indexing.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/integration.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/display.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/calibration_frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/spotfinder_frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer creating build/bdist.linux-loongarch64/wheel/rstbx/array_family copying build/lib/rstbx/array_family/flex.py -> build/bdist.linux-loongarch64/wheel/./rstbx/array_family copying build/lib/rstbx/array_family/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/array_family copying build/lib/rstbx/utils.py -> build/bdist.linux-loongarch64/wheel/./rstbx creating build/bdist.linux-loongarch64/wheel/rstbx/cftbx copying build/lib/rstbx/cftbx/coordinate_frame_converter.py -> build/bdist.linux-loongarch64/wheel/./rstbx/cftbx copying build/lib/rstbx/cftbx/coordinate_frame_helpers.py -> build/bdist.linux-loongarch64/wheel/./rstbx/cftbx copying build/lib/rstbx/cftbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/cftbx copying build/lib/rstbx/cftbx/tst_coordinate_frame_converter.py -> build/bdist.linux-loongarch64/wheel/./rstbx/cftbx creating build/bdist.linux-loongarch64/wheel/rstbx/sublattice_support copying build/lib/rstbx/sublattice_support/tst_sublattice.py -> build/bdist.linux-loongarch64/wheel/./rstbx/sublattice_support copying build/lib/rstbx/sublattice_support/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/sublattice_support copying build/lib/rstbx/sublattice_support/change_basis.py -> build/bdist.linux-loongarch64/wheel/./rstbx/sublattice_support creating build/bdist.linux-loongarch64/wheel/rstbx/dials_core copying build/lib/rstbx/dials_core/integration_core.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dials_core copying build/lib/rstbx/dials_core/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dials_core copying build/lib/rstbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./rstbx creating build/bdist.linux-loongarch64/wheel/rstbx/bandpass copying build/lib/rstbx/bandpass/simulated_annealing.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bandpass copying build/lib/rstbx/bandpass/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bandpass creating build/bdist.linux-loongarch64/wheel/cma_es copying build/lib/cma_es/cma_es_interface.py -> build/bdist.linux-loongarch64/wheel/./cma_es copying build/lib/cma_es/tst_cma_es.py -> build/bdist.linux-loongarch64/wheel/./cma_es copying build/lib/cma_es/__init__.py -> build/bdist.linux-loongarch64/wheel/./cma_es copying build/lib/cma_es/run_tests.py -> build/bdist.linux-loongarch64/wheel/./cma_es creating build/bdist.linux-loongarch64/wheel/cbflib_adaptbx creating build/bdist.linux-loongarch64/wheel/cbflib_adaptbx/command_line copying build/lib/cbflib_adaptbx/command_line/dump.py -> build/bdist.linux-loongarch64/wheel/./cbflib_adaptbx/command_line copying build/lib/cbflib_adaptbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./cbflib_adaptbx/command_line copying build/lib/cbflib_adaptbx/copy_files.py -> build/bdist.linux-loongarch64/wheel/./cbflib_adaptbx copying build/lib/cbflib_adaptbx/exercise_compression.py -> build/bdist.linux-loongarch64/wheel/./cbflib_adaptbx copying build/lib/cbflib_adaptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cbflib_adaptbx copying build/lib/cbflib_adaptbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./cbflib_adaptbx creating build/bdist.linux-loongarch64/wheel/libtbx copying build/lib/libtbx/containers.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/jobs copying build/lib/libtbx/jobs/manager.py -> build/bdist.linux-loongarch64/wheel/./libtbx/jobs creating build/bdist.linux-loongarch64/wheel/libtbx/jobs/backends copying build/lib/libtbx/jobs/backends/base.py -> build/bdist.linux-loongarch64/wheel/./libtbx/jobs/backends copying build/lib/libtbx/jobs/backends/batch.py -> build/bdist.linux-loongarch64/wheel/./libtbx/jobs/backends copying build/lib/libtbx/jobs/backends/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/jobs/backends copying build/lib/libtbx/jobs/backends/local.py -> build/bdist.linux-loongarch64/wheel/./libtbx/jobs/backends copying build/lib/libtbx/jobs/backends/slurm.py -> build/bdist.linux-loongarch64/wheel/./libtbx/jobs/backends copying build/lib/libtbx/jobs/tst_slurm.py -> build/bdist.linux-loongarch64/wheel/./libtbx/jobs copying build/lib/libtbx/jobs/tst_batch.py -> build/bdist.linux-loongarch64/wheel/./libtbx/jobs copying build/lib/libtbx/jobs/tst_manager.py -> build/bdist.linux-loongarch64/wheel/./libtbx/jobs copying build/lib/libtbx/jobs/fake_slurm.py -> build/bdist.linux-loongarch64/wheel/./libtbx/jobs copying build/lib/libtbx/jobs/tst_local.py -> build/bdist.linux-loongarch64/wheel/./libtbx/jobs copying build/lib/libtbx/jobs/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/jobs copying build/lib/libtbx/pyplot.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_run_tests_parallel_unique_dirs.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_word_index_generator.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/assert_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_fully_buffered_timeout.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/cpp_function_name.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/program_template.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_python_code_parsing.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/phil copying build/lib/libtbx/phil/interface.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/tokenizer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/command_line.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/tst.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/tst_experimental.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/experimental.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/gui_objects.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/parser.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/tst_tokenizer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/tst_interface.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/tst_easy_mp_multicore.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/clear_paths.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/console_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/start_print_trace.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_representation.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_citations.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/complex_math.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_t96_roster.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/runtime_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_topological_sort.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/word_index_generator.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/dlite.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/option_parser.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/thread_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/command_line copying build/lib/libtbx/command_line/show_module_dependencies.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/start_binary_bundle.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/env_run.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_env.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/prime_factors_of.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_python_sys_executable.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_host_and_user.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_tests.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/clear_paths.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/make_sphinx_html.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/sge_available_slots.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_not_show_diff.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_include_paths.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_build_options.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_dist_paths.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/add_docstrings_with_ai.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/printenv.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_but_no_repr.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/line_count.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/start_process.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/extract_code_from_txt.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/nequal.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/import_all_python.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/wait_for_file.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_commands.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/remove_tree.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_files.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/path_utility.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_numpy_version.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_unused_imports.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/check_libcpp.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/parallel_simple.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/cctbx_chunk.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_stdin_contains_strings.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_repository_paths.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/scons.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_mac_app.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/list_source_files_sorted_by_size.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_full_command_path.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/list_files.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/run_tests_parallel.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_windows_exe.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/epydoc_run.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_number_of_processors.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_unzipsfx.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/remote_processing.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/sphinx_build.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_pdb_mmcif_problems.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/import_all_ext.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_reserved_names.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/raise_exception_for_testing.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_bin_path.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_untested.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_python_dependencies.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/bundle_as_exe.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_selfx.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_pythonpath.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/resource_monitor_plot.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_date_and_time.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/make_dist.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_in_repositories.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_cctbx_bundle_for_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_line_count.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_all_on_path.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/py_compile_all.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/analyse_code_comments.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/install_conda.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/clean_clutter.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/phil.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_under_build.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/easy_qsub.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/bootstrap.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/help.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/ipython_shell_start.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_install_script_bat.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_stdin_ends_with.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/git_avoid_merges.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/remove_unused_imports.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/install.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_lib_path.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_old_style_classes.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/reindent.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_clutter.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/run_pickled_function.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/list_modules.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_build_path.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_unused_imports_crude.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_environ_usage.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/sge_qstat_counts.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_variable_names.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_stdin.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/dtrace.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/any2unix.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_numeric_version.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/seconds_since_the_epoch.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line creating build/bdist.linux-loongarch64/wheel/libtbx/sphinx copying build/lib/libtbx/sphinx/pubmed.py -> build/bdist.linux-loongarch64/wheel/./libtbx/sphinx copying build/lib/libtbx/sphinx/python_string.py -> build/bdist.linux-loongarch64/wheel/./libtbx/sphinx copying build/lib/libtbx/sphinx/phil.py -> build/bdist.linux-loongarch64/wheel/./libtbx/sphinx copying build/lib/libtbx/sphinx/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/sphinx creating build/bdist.linux-loongarch64/wheel/libtbx/scheduling copying build/lib/libtbx/scheduling/mp_handler.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/job_scheduler.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/shared_resource.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/result.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/thread_handler.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/socket_queue.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/process_pool.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/file_queue.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/stacktrace.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/mainthread.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/parallel_for.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/philgen.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/cluster_handler.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/cli.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/easy_run.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_runtime_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/subprocess_with_fixes.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_guided_coding.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/object_oriented_patterns.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/bundle copying build/lib/libtbx/bundle/copy_all.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/copy_runtime_sources.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/install_bat.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/copy_build_libtbx.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/install_csh.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/easy_mp.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/program_utils copying build/lib/libtbx/program_utils/result.py -> build/bdist.linux-loongarch64/wheel/./libtbx/program_utils copying build/lib/libtbx/program_utils/statistics_info.py -> build/bdist.linux-loongarch64/wheel/./libtbx/program_utils copying build/lib/libtbx/program_utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/program_utils copying build/lib/libtbx/tst_containers.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/introspection.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/development copying build/lib/libtbx/development/timers.py -> build/bdist.linux-loongarch64/wheel/./libtbx/development copying build/lib/libtbx/development/xcode_build_phase.py -> build/bdist.linux-loongarch64/wheel/./libtbx/development copying build/lib/libtbx/development/except_Exception.py -> build/bdist.linux-loongarch64/wheel/./libtbx/development copying build/lib/libtbx/development/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/development copying build/lib/libtbx/xmlrpc_server_example.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/topological_sort.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_math_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/env_config.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/server copying build/lib/libtbx/server/StartServer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/server copying build/lib/libtbx/server/FileServer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/server copying build/lib/libtbx/server/SocketServer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/server copying build/lib/libtbx/server/FileSocket.py -> build/bdist.linux-loongarch64/wheel/./libtbx/server copying build/lib/libtbx/server/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/server copying build/lib/libtbx/server/FileClient.py -> build/bdist.linux-loongarch64/wheel/./libtbx/server copying build/lib/libtbx/math_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/pkg_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/forward_compatibility.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/crossmingw.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/find_reference_cycles.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_xmlrpc_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/configure.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/file_clutter.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/clusterTests.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_thread_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/python_code_parsing.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/smart_open.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/easy_pickle.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_version.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/callbacks.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/version.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/scheduling_helpers.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/sge_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/tst.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/pbs_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/remote.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/generic.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/lsf.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils creating build/bdist.linux-loongarch64/wheel/libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/transfer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/util.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/status.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/polling.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/submission.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/errors.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/looping.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/communication.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/scheduling.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/citations.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/test_utils copying build/lib/libtbx/test_utils/t96_roster.py -> build/bdist.linux-loongarch64/wheel/./libtbx/test_utils copying build/lib/libtbx/test_utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/test_utils copying build/lib/libtbx/test_utils/parallel.py -> build/bdist.linux-loongarch64/wheel/./libtbx/test_utils copying build/lib/libtbx/tst_mahalanobis.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/easy_profile.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/pyframe.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/auto_build copying build/lib/libtbx/auto_build/write_gui_dispatcher_include.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/regenerate_module_files.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/install_base_packages.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/plus_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/installer_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_mac_app.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_windows_exe.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/make_bundle.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_cctbx_bundle_for_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_mac_pkg.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/package_defs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/install_conda.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_windows_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/setup_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/bootstrap.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/install_distribution.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/rpath.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build creating build/bdist.linux-loongarch64/wheel/libtbx/langchain copying build/lib/libtbx/langchain/phenix_knowledge.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/hypothesis_evaluator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/graph.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/program_registry.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/file_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/workflow_state.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/validation_inspector.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/session_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/template_builder.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/rate_limit_handler.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/nl_to_phil.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/session.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/format_validation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/dry_run_manager.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/docs_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/workflow_engine.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/validation_history.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/pattern_manager.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/program_validator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/event_log.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/advice_preprocessor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/graph_nodes.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/rules_selector.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/phenix_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/error_classifier.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/metric_evaluator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/thinking_agent.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/command_builder.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/generate_logic_doc.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/r_factors.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/directive_extractor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/generate_safety_docs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/intent_classifier.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/sanity_checker.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/config_loader.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/contract.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/gate_evaluator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/memory.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/metrics_analyzer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/raw_advice_scanner.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/transport.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/log_section_extractor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/mtz_inspector.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/graph_state.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/api_client.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/phil_validator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/error_analyzer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/tst_agent_enhancements.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/planner.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/structure_model.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/failure_diagnoser.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/yaml_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/kb_tags.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/event_formatter.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/file_metadata.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/best_files_tracker.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/display_data_model.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/strategy_memory.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/placement_checker.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/plan_generator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/perceive_checks.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/command_postprocessor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/directive_validator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/commands copying build/lib/libtbx/langchain/commands/base.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/commands copying build/lib/libtbx/langchain/commands/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/commands copying build/lib/libtbx/langchain/run_build_db.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/utils copying build/lib/libtbx/langchain/utils/text_processing.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/utils copying build/lib/libtbx/langchain/utils/query.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/utils copying build/lib/libtbx/langchain/utils/run_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/utils copying build/lib/libtbx/langchain/utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/utils creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/yaml_loader.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/thinking_prompts.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/prompts_hybrid.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/program_registration.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/explanation_prompts.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/plan_schema.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/prompts.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/summary_display.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/phenix_programs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/plan_template_loader.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/api_schema.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/metric_patterns.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/kb_loader.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/html_report_template.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/examples copying build/lib/libtbx/langchain/examples/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/examples creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/core copying build/lib/libtbx/langchain/core/_build_info.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/core copying build/lib/libtbx/langchain/core/llm.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/core copying build/lib/libtbx/langchain/core/types.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/core copying build/lib/libtbx/langchain/core/_version.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/core copying build/lib/libtbx/langchain/core/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/core creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/strategies copying build/lib/libtbx/langchain/strategies/base.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/strategies copying build/lib/libtbx/langchain/strategies/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/strategies creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/agent_session_analyzer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/analysis_request.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/state_extractor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/report_verifier.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/orientation_strip.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/summarizer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/analyzer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/log_info.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/program_identity.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/log_extraction copying build/lib/libtbx/langchain/log_extraction/validate.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/log_extraction copying build/lib/libtbx/langchain/log_extraction/corpus_paths.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/log_extraction copying build/lib/libtbx/langchain/log_extraction/run_controls.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/log_extraction copying build/lib/libtbx/langchain/log_extraction/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/log_extraction copying build/lib/libtbx/langchain/log_extraction/run_measurements.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/log_extraction copying build/lib/libtbx/langchain/log_extraction/log_structure_extractor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/log_extraction creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/document_loader.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/retriever.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/vector_store.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/_chroma_resilience.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/run_inspect_db.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain copying build/lib/libtbx/langchain/run_query_docs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_contract_compliance.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase4_history_flags.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_spurious_stop_after_requested.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_v112_13_fixes.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_settings_list_coercion.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_session_directives.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase5_error_classification.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/canary_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_protocol_version.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_canary.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase9_llm_perturbation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_force_no_ai_server.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_cryoem_metric_evaluator_validation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_scenario_tracer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_action_item_1.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_stop_condition_false_positive.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_diagnosed_failure_stop.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/tests/integration copying build/lib/libtbx/langchain/tests/integration/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests/integration copying build/lib/libtbx/langchain/tests/tst_planning_framework.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/test_api_keys.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_intent_classifier.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_dry_run.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_data_input_filter.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_b1_stop_after_requested.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_planning.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_directive_extraction.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_b2_gated_wipe_planning.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/framework.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/run_llm_tests.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_a1_extractor_smoke.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_c1_raw_authority.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_framework_self.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/canary_check.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/tst_density_modify_experiment_type.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_diagnostic_messages.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_solve_action_keywords.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_report_verifier.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_file_encoding.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase2_path_consistency.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_plan_autostop_validation_suppression.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_extractor_grounding.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_new_programs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_h17_strip_executor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_backward_compat.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase3d_motivating_tutorial.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_autobuild_hl_recovery.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_integration.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_rfree_resolution_stop.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_structure_model.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase8_command_building.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_log_structure_extractor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_workflow_complete_stop.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_rfree_lock_reconciliation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_old_client_compat.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_sequence_only_routing.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_state_serialization.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_placement_skip_rebuild.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_autobuild_sequence_waiver.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_summary_file.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_extractor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_program_registration.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_initialize_plan_smoke.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_validate_step_after_program_guard.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_stop_reason_prompt.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_extract_raw_advice.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase1_contract_gaps.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_safe_float_consolidation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_n_bugs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/audit_phase_rename.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_mtz_phases_session_blocking.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_obs_labels_auto_fill.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_stop_condition_fix.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_silent_stop_abort_messages.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_command_builder.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_input_mtz_has_rfree_plumbing.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_event_formatter_file_categories.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phaser_multimodel.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_session_summary.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_agent_build_info.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_mode_isolation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_api_schema.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_workflow_state.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_yaml_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase3_serialization_symmetry.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_session_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_rebuild_template_selection.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_llm_unavailable_notice.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_raw_advice_scanner.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_user_advice_filter.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase6_category_consumer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_audit_fixes.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_transport.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_halfmap_sigmaa_inventory.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_dependencies.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_resolve_cryo_em_ncs_inject.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_extractor_behavior_regression.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_program_identity.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_decision_flow.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directives_integration.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_template.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_file_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_ligandfit_patterns.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_supported_providers_single_source.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_provider_error_classification.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_reasoning_command_divergence.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_after_program_fill_from_raw.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_metric_patterns.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_reactive_deviation_hold.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_extended_stop_phrasings.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_space_group_validation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_validator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_resume_reopen_stages.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_cryoem_stop_validation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase2b_activation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_program_requirements.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_file_categorization.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_ligand_workflow_restart.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_abort_message_all_stops.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_sanity_checker.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phil_namespace_cleaner.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_build_experiment_type_and_rfree.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_copies_tracking.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_plan_lead_program_offer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_validate_file_overrides.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_docs_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_transport_surfaces.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_strategy_memory.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_advice_preprocessing.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_hypothesis_evaluator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_after_program_prompt.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_file_categorizer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_predict_and_build_no_ncs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_autosol_bugs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_metrics_analyzer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_v120_providers.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_stop_reason_codes.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phil_validation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_plan_catchup_failure_semantics.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_classify_mtz_type_001.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_rfree_generate_guard.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_validation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_refine_final_rfree.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_error_classifier.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_langchain_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_grounding_stop_after_requested.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_skip_to_program.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_best_files_tracker.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_validator_typo_hints.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_provider_lock.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_display_data_model.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_hardcoded_cleanup.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_analysis_request.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_perceive_stop_checks.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_rfree_flags_missing.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_extraction_failure_visibility.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase0_static_audit.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_optional_dep_resilience.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/run_all_tests.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_error_analyzer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_yaml_config.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_thinking_defense.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_summary_display.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_gate_evaluator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_event_system.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_preprocessor_file_override.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_validation_history.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_log_extractor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_portkey_embedding_model.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_h18_1_phil_roundtrip.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_plan_generator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase7_routing_simulation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_mtz_crosscheck.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_fix_verification.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_cc_key_extraction.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_simple_extractor_validation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_history_analysis.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_skip_promotion.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_layer_diagnostics.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/analyze_tutorial_runs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_dock_and_stop.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_fabricated_stop_condition.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_extractor_sentinel_space_group.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_step1f_single_emit.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_standalone_consistency.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_default_models.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_pattern_manager.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_thinking_agent.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase3_bug5.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_plan_schema.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_general_resolver.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_shared_code_imports.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_explanation_prompts.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/tst_easy_mp_state.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_object_oriented_patterns.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/load_env.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/log.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_scheduling.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_easy_pickle.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_easy_mp.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/str_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/code_analysis.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_conda_dispatcher.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_binary_search.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/metric_prefixes.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/wingide.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_program_template.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_path.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/binary_search.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_find_unused_imports.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/xmlrpc_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/path.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/mpi4py.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/simplexml.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_run_tests_parallel_retry.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/progress.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_citation_encoding.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/objgraph.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/table_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/resource_monitor.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_str_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_dlite.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/cluster.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_add_docstrings_with_ai.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/try_hello_world_c.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/simtbx creating build/bdist.linux-loongarch64/wheel/simtbx/diffBragg copying build/lib/simtbx/diffBragg/mpi_logger.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/psf.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/prep_stage2_input.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg creating build/bdist.linux-loongarch64/wheel/simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/refiners/base_refiner.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/refiners/stage_two_refiner.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners creating build/bdist.linux-loongarch64/wheel/simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/manager.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/hexagonal.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/tetragonal.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/monoclinic.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/parameters.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/refiners/geometry.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/refiners/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/device.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/attr_list.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/ensemble_refine_launcher.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/parameter_errors.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/hopper_utils.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/hopper_ensemble_utils.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/phil.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/hopper_io.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/stage_two_utils.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/utils.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg creating build/bdist.linux-loongarch64/wheel/simtbx/modeling copying build/lib/simtbx/modeling/FormatHDF5AttributeGeometry.py -> build/bdist.linux-loongarch64/wheel/./simtbx/modeling copying build/lib/simtbx/modeling/forward_models.py -> build/bdist.linux-loongarch64/wheel/./simtbx/modeling copying build/lib/simtbx/modeling/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/modeling copying build/lib/simtbx/modeling/predictions.py -> build/bdist.linux-loongarch64/wheel/./simtbx/modeling creating build/bdist.linux-loongarch64/wheel/simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_minimal.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_threads.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_gui_init.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_anisotropic_mosaicity.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_beam.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_gauss_argchk.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_multisource_background.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_multipanel.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_input.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_gaussian_mosaicity2.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_crystal.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_basic.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_pilatus.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/anisotropic_mosaicity.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/sim_data.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_gui_frames.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/utils.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_gaussian_mosaicity.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_mosaic.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_cbf_write.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_gui_dialogs.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg creating build/bdist.linux-loongarch64/wheel/simtbx/gpu copying build/lib/simtbx/gpu/tst_gpu_multisource_background.py -> build/bdist.linux-loongarch64/wheel/./simtbx/gpu copying build/lib/simtbx/gpu/tst_shoeboxes.py -> build/bdist.linux-loongarch64/wheel/./simtbx/gpu copying build/lib/simtbx/gpu/tst_exafel_api.py -> build/bdist.linux-loongarch64/wheel/./simtbx/gpu copying build/lib/simtbx/gpu/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/gpu creating build/bdist.linux-loongarch64/wheel/simtbx/kokkos copying build/lib/simtbx/kokkos/tst_kokkos_lib.py -> build/bdist.linux-loongarch64/wheel/./simtbx/kokkos copying build/lib/simtbx/kokkos/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/kokkos copying build/lib/simtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx copying build/lib/simtbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./simtbx creating build/bdist.linux-loongarch64/wheel/simtbx/pixel copying build/lib/simtbx/pixel/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/pixel creating build/bdist.linux-loongarch64/wheel/omptbx copying build/lib/omptbx/tst.py -> build/bdist.linux-loongarch64/wheel/./omptbx copying build/lib/omptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./omptbx creating build/bdist.linux-loongarch64/wheel/gltbx copying build/lib/gltbx/gl_managed.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/generate_functions_bpl.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/images.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_cube.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_motion_on_tab.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_viewers_images.py -> build/bdist.linux-loongarch64/wheel/./gltbx creating build/bdist.linux-loongarch64/wheel/gltbx/command_line copying build/lib/gltbx/command_line/try_imports.py -> build/bdist.linux-loongarch64/wheel/./gltbx/command_line copying build/lib/gltbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./gltbx/command_line copying build/lib/gltbx/wx_scene.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/viewer_utils.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/tst.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/util.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_viewer_leapmotion.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/quadrics.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_viewer_example.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/tst_ellipsoids.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/generate_fonts_ucs_cpp.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/extract_opengl_specs.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/gl.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_viewer.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/tst_fonts.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/fonts.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/glu.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/generate_defines_bpl.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/tst_viewer_utils.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_ellipsoids_test.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./gltbx creating build/bdist.linux-loongarch64/wheel/serialtbx creating build/bdist.linux-loongarch64/wheel/serialtbx/mono_simulation copying build/lib/serialtbx/mono_simulation/util.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/mono_simulation copying build/lib/serialtbx/mono_simulation/__init__.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/mono_simulation copying build/lib/serialtbx/mono_simulation/max_like.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/mono_simulation creating build/bdist.linux-loongarch64/wheel/serialtbx/detector copying build/lib/serialtbx/detector/jungfrau.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector copying build/lib/serialtbx/detector/rayonix.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector copying build/lib/serialtbx/detector/cspad.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector copying build/lib/serialtbx/detector/xtc.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector copying build/lib/serialtbx/detector/__init__.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector creating build/bdist.linux-loongarch64/wheel/serialtbx/detector/legacy_metrology copying build/lib/serialtbx/detector/legacy_metrology/generic_detector.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector/legacy_metrology copying build/lib/serialtbx/detector/legacy_metrology/cspad_detector.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector/legacy_metrology copying build/lib/serialtbx/detector/legacy_metrology/metrology.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector/legacy_metrology copying build/lib/serialtbx/detector/legacy_metrology/__init__.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector/legacy_metrology copying build/lib/serialtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./serialtbx creating build/bdist.linux-loongarch64/wheel/serialtbx/util copying build/lib/serialtbx/util/construct_frame.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/util copying build/lib/serialtbx/util/energy_scan_notch_finder.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/util copying build/lib/serialtbx/util/time.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/util copying build/lib/serialtbx/util/__init__.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/util creating build/bdist.linux-loongarch64/wheel/scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/serialization copying build/lib/scitbx/serialization/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/serialization copying build/lib/scitbx/cubicle_neighbors.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/r3_utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/suffixtree copying build/lib/scitbx/suffixtree/single.py -> build/bdist.linux-loongarch64/wheel/./scitbx/suffixtree creating build/bdist.linux-loongarch64/wheel/scitbx/suffixtree/test copying build/lib/scitbx/suffixtree/test/tst_single.py -> build/bdist.linux-loongarch64/wheel/./scitbx/suffixtree/test copying build/lib/scitbx/suffixtree/test/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/suffixtree/test creating build/bdist.linux-loongarch64/wheel/scitbx/suffixtree/boost_python copying build/lib/scitbx/suffixtree/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/suffixtree/boost_python copying build/lib/scitbx/suffixtree/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/suffixtree creating build/bdist.linux-loongarch64/wheel/scitbx/command_line copying build/lib/scitbx/command_line/show_sizes.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/apply_tapenade_hints.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/generate_error_h.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/histogram.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/show_exp_times.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/unicode_examples.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/smoothing.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/regular_grid_on_unit_sphere.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/linalg copying build/lib/scitbx/linalg/svd.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg copying build/lib/scitbx/linalg/eigensystem.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg copying build/lib/scitbx/linalg/ext.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg creating build/bdist.linux-loongarch64/wheel/scitbx/linalg/boost_python copying build/lib/scitbx/linalg/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/boost_python copying build/lib/scitbx/linalg/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg creating build/bdist.linux-loongarch64/wheel/scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_lapack_dsyev.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_cholesky.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_matrix.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_eigensystem.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_lapack_svd.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_svd.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/householder.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg creating build/bdist.linux-loongarch64/wheel/scitbx/stdlib copying build/lib/scitbx/stdlib/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stdlib creating build/bdist.linux-loongarch64/wheel/scitbx/misc copying build/lib/scitbx/misc/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/misc copying build/lib/scitbx/differential_evolution.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/restraints.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/line_search copying build/lib/scitbx/line_search/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/line_search copying build/lib/scitbx/minimizers.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/matrix copying build/lib/scitbx/matrix/row_echelon.py -> build/bdist.linux-loongarch64/wheel/./scitbx/matrix copying build/lib/scitbx/matrix/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/matrix creating build/bdist.linux-loongarch64/wheel/scitbx/matrix/tests copying build/lib/scitbx/matrix/tests/tst_row_echelon.py -> build/bdist.linux-loongarch64/wheel/./scitbx/matrix/tests copying build/lib/scitbx/matrix/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/matrix/tests copying build/lib/scitbx/matrix/tests/tst_householder.py -> build/bdist.linux-loongarch64/wheel/./scitbx/matrix/tests copying build/lib/scitbx/cross_entropy.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/examples copying build/lib/scitbx/examples/minimizer_comparisons.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/immoptibox_ports.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/lbfgs_recipe.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/flex_grid.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/chebyshev_lsq_example.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/flex_array_loops.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/integrating_a_weighted_sinc_function.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/principal_axes_of_inertia.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/bootstrap.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/functions.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/lbfgs_linear_least_squares_fit.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples creating build/bdist.linux-loongarch64/wheel/scitbx/examples/bevington copying build/lib/scitbx/examples/bevington/silver.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples/bevington copying build/lib/scitbx/examples/bevington/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples/bevington copying build/lib/scitbx/examples/rigid_body_refinement_core.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples creating build/bdist.linux-loongarch64/wheel/scitbx/iso_surface copying build/lib/scitbx/iso_surface/tst_iso_surface.py -> build/bdist.linux-loongarch64/wheel/./scitbx/iso_surface copying build/lib/scitbx/iso_surface/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/iso_surface copying build/lib/scitbx/simplex.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/error copying build/lib/scitbx/error/tst_error.py -> build/bdist.linux-loongarch64/wheel/./scitbx/error copying build/lib/scitbx/error/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/error creating build/bdist.linux-loongarch64/wheel/scitbx/glmtbx creating build/bdist.linux-loongarch64/wheel/scitbx/glmtbx/boost_python copying build/lib/scitbx/glmtbx/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/glmtbx/boost_python copying build/lib/scitbx/glmtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/glmtbx creating build/bdist.linux-loongarch64/wheel/scitbx/glmtbx/tests copying build/lib/scitbx/glmtbx/tests/tst.py -> build/bdist.linux-loongarch64/wheel/./scitbx/glmtbx/tests copying build/lib/scitbx/glmtbx/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/glmtbx/tests creating build/bdist.linux-loongarch64/wheel/scitbx/sparse creating build/bdist.linux-loongarch64/wheel/scitbx/sparse/boost_python copying build/lib/scitbx/sparse/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/sparse/boost_python copying build/lib/scitbx/sparse/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/sparse creating build/bdist.linux-loongarch64/wheel/scitbx/sparse/tests copying build/lib/scitbx/sparse/tests/tst_sparse.py -> build/bdist.linux-loongarch64/wheel/./scitbx/sparse/tests copying build/lib/scitbx/sparse/tests/tst_lu_factorization.py -> build/bdist.linux-loongarch64/wheel/./scitbx/sparse/tests copying build/lib/scitbx/sparse/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/sparse/tests creating build/bdist.linux-loongarch64/wheel/scitbx/random creating build/bdist.linux-loongarch64/wheel/scitbx/random/boost_python copying build/lib/scitbx/random/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/random/boost_python copying build/lib/scitbx/random/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/random creating build/bdist.linux-loongarch64/wheel/scitbx/random/tests copying build/lib/scitbx/random/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/random/tests copying build/lib/scitbx/random/tests/tst_random.py -> build/bdist.linux-loongarch64/wheel/./scitbx/random/tests copying build/lib/scitbx/direct_search_simulated_annealing.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/lbfgsb.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/lbfgs copying build/lib/scitbx/lbfgs/tst_func_free_line_search.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs copying build/lib/scitbx/lbfgs/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs creating build/bdist.linux-loongarch64/wheel/scitbx/lbfgs/dev copying build/lib/scitbx/lbfgs/dev/twisted_gaussian.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs/dev copying build/lib/scitbx/lbfgs/dev/run.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs/dev copying build/lib/scitbx/lbfgs/dev/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs/dev copying build/lib/scitbx/lbfgs/tst_curvatures.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs copying build/lib/scitbx/lbfgs/tst_mpi_split_evaluator.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs copying build/lib/scitbx/lbfgs/tst_lbfgs_fem.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs copying build/lib/scitbx/lbfgs/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs creating build/bdist.linux-loongarch64/wheel/scitbx/wigner copying build/lib/scitbx/wigner/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/wigner copying build/lib/scitbx/wigner/tst_wigner3j.py -> build/bdist.linux-loongarch64/wheel/./scitbx/wigner creating build/bdist.linux-loongarch64/wheel/scitbx/stl copying build/lib/scitbx/stl/tst_set.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl copying build/lib/scitbx/stl/vector.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl copying build/lib/scitbx/stl/tst_map.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl copying build/lib/scitbx/stl/set.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl copying build/lib/scitbx/stl/map.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl copying build/lib/scitbx/stl/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl copying build/lib/scitbx/stl/tst_vector.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl creating build/bdist.linux-loongarch64/wheel/scitbx/boost_python copying build/lib/scitbx/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/boost_python creating build/bdist.linux-loongarch64/wheel/scitbx/rigid_body creating build/bdist.linux-loongarch64/wheel/scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_featherstone.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_free_motion_hard.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/free_motion_reference_impl.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/test_utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_spherical_refinement.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_molecules.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/joint_lib.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/wx_molecules.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/featherstone.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/wx_joint_lib.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_singular.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_joint_lib.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_free_motion.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/test_simulation.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/wx_free_motion.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/tst.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body creating build/bdist.linux-loongarch64/wheel/scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/tardy.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/body_lib.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/spatial_lib.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/tst_tardy.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/joint_lib.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/featherstone.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/make_bundles.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/wx_tardy.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/tst_basic.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/tst_energy_plots.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body creating build/bdist.linux-loongarch64/wheel/scitbx/dtmin copying build/lib/scitbx/dtmin/realsymmetricpseudoinverse.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/twisted_gaussian.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/bounds.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin creating build/bdist.linux-loongarch64/wheel/scitbx/dtmin/regression copying build/lib/scitbx/dtmin/regression/tst_dtmin_booth.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin/regression copying build/lib/scitbx/dtmin/regression/tst_dtmin_basic.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin/regression copying build/lib/scitbx/dtmin/regression/tst_dtmin_twisted.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin/regression copying build/lib/scitbx/dtmin/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin/regression copying build/lib/scitbx/dtmin/refinebase.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/min_logging.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/optional.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/compulsory.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/auxiliary.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/reparams.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/minimizer.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/genetic_algorithm_with_mp.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/fftpack.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/math copying build/lib/scitbx/math/so3_lie_algebra.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/curve_fitting.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/incremental_SO3_sampling.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/sphere_sphere_intersection.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_undirected_graph.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/undirected_graph.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/distributions.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/gaussian.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_zernike_mom.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/cubic_spline.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/zernike_align_fft.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/superpose.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_bessel_zeros.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_2d_zernike.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math creating build/bdist.linux-loongarch64/wheel/scitbx/math/dev copying build/lib/scitbx/math/dev/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/dev copying build/lib/scitbx/math/clustering.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/scale_curves.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/spe.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/ext.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_zernike.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/chebyshev_lsq_fit.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/lefebvre.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/des_3_240_21.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/des_3_100_13.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/fit_quadratic_function.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math creating build/bdist.linux-loongarch64/wheel/scitbx/math/boost_python copying build/lib/scitbx/math/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/boost_python copying build/lib/scitbx/math/tst_multivariate_moments.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/fliege_mayer_900_ylm.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/multiple_superposition.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/gumbel.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/besselk.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/sieve_of_eratosthenes.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/periodogram.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/fliege_mayer_900.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/gaussian_fit.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/breakpoint.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/euler_angles.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_so3_lie_algebra.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/fit_peak.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/farey.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/minimum_covering_ellipsoid.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math creating build/bdist.linux-loongarch64/wheel/scitbx/math/erf copying build/lib/scitbx/math/erf/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/erf copying build/lib/scitbx/math/fliege_mayer_400.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math creating build/bdist.linux-loongarch64/wheel/scitbx/math/tests copying build/lib/scitbx/math/tests/tst_periodogram.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_euler_angles.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_curve_fitting.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_similarity_indices.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_r3_rotation.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_g_function.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_resample.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_line_search.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_math.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_angle_derivative.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_tetrahedron.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_exp_functions.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_weighted_correlation.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_error_propagation_matrix_inverse.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_halton.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_bessel.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_gaussian.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_superpose.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_fit_peak.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_orthonormal_basis.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_quadrature.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_gcd.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_cubic_equation.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_minimum_covering_ellipsoid.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_dmatrix.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_fit_quadratic_function.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_clustering.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_uniform_rotation_matrix.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/minpack.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/slatec copying build/lib/scitbx/slatec/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/slatec creating build/bdist.linux-loongarch64/wheel/scitbx/lstbx copying build/lib/scitbx/lstbx/normal_eqns.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx copying build/lib/scitbx/lstbx/normal_eqns_solving.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx creating build/bdist.linux-loongarch64/wheel/scitbx/lstbx/benchmarks copying build/lib/scitbx/lstbx/benchmarks/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx/benchmarks creating build/bdist.linux-loongarch64/wheel/scitbx/lstbx/boost_python copying build/lib/scitbx/lstbx/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx/boost_python copying build/lib/scitbx/lstbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx creating build/bdist.linux-loongarch64/wheel/scitbx/lstbx/tests copying build/lib/scitbx/lstbx/tests/tst_normal_equations.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx/tests copying build/lib/scitbx/lstbx/tests/test_problems.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx/tests copying build/lib/scitbx/lstbx/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx/tests creating build/bdist.linux-loongarch64/wheel/scitbx/array_family copying build/lib/scitbx/array_family/flex.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family creating build/bdist.linux-loongarch64/wheel/scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_numpy_bridge.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/regression_test.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_flex.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_numpy_scalar_conversions.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_smart_selection.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_flex_argument_passing.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_shared.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python creating build/bdist.linux-loongarch64/wheel/scitbx/array_family/accessors copying build/lib/scitbx/array_family/accessors/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/accessors copying build/lib/scitbx/array_family/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family creating build/bdist.linux-loongarch64/wheel/scitbx/array_family/detail copying build/lib/scitbx/array_family/detail/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/detail copying build/lib/scitbx/array_family/shared.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family copying build/lib/scitbx/golden_section_search.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/source_generators copying build/lib/scitbx/source_generators/lbfgs_fem.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators copying build/lib/scitbx/source_generators/flex_fwd_h.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators copying build/lib/scitbx/source_generators/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators creating build/bdist.linux-loongarch64/wheel/scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_apply.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_algebras.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_operator_traits_builtin.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_operator_functors.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_reductions.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/operator_functor_info.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_all.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_std_imports.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators creating build/bdist.linux-loongarch64/wheel/scitbx/graph copying build/lib/scitbx/graph/tst_tardy_tree_find_paths.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/rigidity_matrix_symbolic.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/tardy_tree.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/rigidity.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/tst_rigidity.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/tst_tardy_tree.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/test_cases_tardy_pdb.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/tst_utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph creating build/bdist.linux-loongarch64/wheel/scitbx/python_utils copying build/lib/scitbx/python_utils/tst_random_transform.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/command_line.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/robust_statistics.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/signal_utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/tst_robust.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/graph_tools.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/random_transform.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/misc.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/tst_graph.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/dicts.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/graphics_utils copying build/lib/scitbx/graphics_utils/tst.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graphics_utils copying build/lib/scitbx/graphics_utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graphics_utils creating build/bdist.linux-loongarch64/wheel/scitbx/tests copying build/lib/scitbx/tests/tst_r3_utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_smoothing.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/differential_evolution.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/simplex.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/direct_search_simulated_annealing.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_genetic_algorithm_with_mp.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_regular_grid_on_unit_sphere.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_basic.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_cubicle_neighbors.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/golden_section_search.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_minimizer_lbfgs_general.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests creating build/bdist.linux-loongarch64/wheel/qttbx copying build/lib/qttbx/qt.py -> build/bdist.linux-loongarch64/wheel/./qttbx creating build/bdist.linux-loongarch64/wheel/qttbx/regression copying build/lib/qttbx/regression/tst_chat_message_input.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_subagent.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_skills.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_window_chrome.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_storage.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_run_tests_manifest.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_overlay_anchor.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_session.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_message_bubble.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_markdown.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_image.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_storage_session.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_eliding.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_agent_core.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_tool_approval.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_phil_widgets.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_diagnostics.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_profile.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_subagent_view.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_conversation_widgets.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_logging_setup.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_mcp_client.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_data_manager_widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_runner.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_search.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_credentials_dialog.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_question_card.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_approval_coordinator.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_auto_height.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_artifact_panel.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_tools.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression creating build/bdist.linux-loongarch64/wheel/qttbx/viewers copying build/lib/qttbx/viewers/chimerax.py -> build/bdist.linux-loongarch64/wheel/./qttbx/viewers copying build/lib/qttbx/viewers/__init__.py -> build/bdist.linux-loongarch64/wheel/./qttbx/viewers creating build/bdist.linux-loongarch64/wheel/qttbx/examples copying build/lib/qttbx/examples/phil_widgets_example.py -> build/bdist.linux-loongarch64/wheel/./qttbx/examples copying build/lib/qttbx/examples/data_manager_example.py -> build/bdist.linux-loongarch64/wheel/./qttbx/examples copying build/lib/qttbx/examples/__init__.py -> build/bdist.linux-loongarch64/wheel/./qttbx/examples copying build/lib/qttbx/examples/_helpers.py -> build/bdist.linux-loongarch64/wheel/./qttbx/examples creating build/bdist.linux-loongarch64/wheel/qttbx/widgets creating build/bdist.linux-loongarch64/wheel/qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/strings_widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/words_widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/key_widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/ints_widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/path_widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/float_widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/int_widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/_colors.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/str_widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/atom_selection.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/space_group.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/choice_widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/bool_widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/delegate.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/__init__.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/floats_widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/multiple.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/text_base.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/unit_cell.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/qstr_widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil creating build/bdist.linux-loongarch64/wheel/qttbx/widgets/data_manager copying build/lib/qttbx/widgets/data_manager/_binding_popup.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/data_manager copying build/lib/qttbx/widgets/data_manager/widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/data_manager copying build/lib/qttbx/widgets/data_manager/_table_model.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/data_manager copying build/lib/qttbx/widgets/data_manager/_delegate.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/data_manager copying build/lib/qttbx/widgets/data_manager/__init__.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/data_manager copying build/lib/qttbx/widgets/data_manager/_phil_helpers.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/data_manager creating build/bdist.linux-loongarch64/wheel/qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/artifact.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/message_input.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat creating build/bdist.linux-loongarch64/wheel/qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/conversation.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/session.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/subagent.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/skills.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/paths.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/tools.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/mcp_client.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/base.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/storage.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/profile.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/runner.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/events.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/__init__.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/errors.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/approval.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/credentials_dialog.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/eliding.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/overlay_anchor.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/tool_approval.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/chat_top_bar.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/conversation_view.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/auto_height.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/search_bar.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/edge_rail.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/conversation_list.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/logging_setup.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/artifact_panel.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/image_cache.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/conversation_search.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/message_bubble.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/markdown_view.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/markdown_export.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/diagnostics.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/__init__.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/tool_call_disclosure.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/question_card.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/image_lightbox.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/__init__.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets copying build/lib/qttbx/widgets/font_init.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets copying build/lib/qttbx/phil.py -> build/bdist.linux-loongarch64/wheel/./qttbx copying build/lib/qttbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./qttbx copying build/lib/qttbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./qttbx creating build/bdist.linux-loongarch64/wheel/fftw3tbx copying build/lib/fftw3tbx/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./fftw3tbx copying build/lib/fftw3tbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./fftw3tbx copying build/lib/fftw3tbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./fftw3tbx running install_egg_info Copying cctbx.egg-info to build/bdist.linux-loongarch64/wheel/./cctbx-2023.12.egg-info running install_scripts creating build/bdist.linux-loongarch64/wheel/cctbx-2023.12.dist-info/WHEEL creating '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/.tmp-sr2pyv6q/cctbx-2023.12-py3-none-any.whl' and adding 'build/bdist.linux-loongarch64/wheel' to it adding 'annlib_adaptbx/__init__.py' adding 'annlib_adaptbx/run_tests.py' adding 'annlib_adaptbx/annlib_adaptbx/__init__.py' adding 'annlib_adaptbx/annlib_adaptbx/sample.py' adding 'annlib_adaptbx/annlib_adaptbx/self_match.py' adding 'annlib_adaptbx/source_generators/__init__.py' adding 'annlib_adaptbx/source_generators/generate_all.py' adding 'boost_adaptbx/__init__.py' adding 'boost_adaptbx/hybrid_times.py' adding 'boost_adaptbx/libtbx_refresh.py' adding 'boost_adaptbx/run_tests.py' adding 'boost_adaptbx/boost/__init__.py' adding 'boost_adaptbx/boost/optional.py' adding 'boost_adaptbx/boost/python.py' adding 'boost_adaptbx/boost/rational.py' adding 'boost_adaptbx/boost/std_pair.py' adding 'boost_adaptbx/boost/tuple.py' adding 'boost_adaptbx/command_line/__init__.py' adding 'boost_adaptbx/command_line/divide_by_zero.py' adding 'boost_adaptbx/command_line/double_overflow.py' adding 'boost_adaptbx/command_line/gcd.py' adding 'boost_adaptbx/command_line/inexact.py' adding 'boost_adaptbx/command_line/int_overflow.py' adding 'boost_adaptbx/command_line/lcm.py' adding 'boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py' adding 'boost_adaptbx/command_line/segmentation_fault.py' adding 'boost_adaptbx/command_line/show_environ_usage.py' adding 'boost_adaptbx/command_line/show_platform_info.py' adding 'boost_adaptbx/graph/__init__.py' adding 'boost_adaptbx/graph/breadth_first_search.py' adding 'boost_adaptbx/graph/clustering_algorithm.py' adding 'boost_adaptbx/graph/connected_component_algorithm.py' adding 'boost_adaptbx/graph/graph_structure_comparison.py' adding 'boost_adaptbx/graph/maximum_clique.py' adding 'boost_adaptbx/graph/metric.py' adding 'boost_adaptbx/graph/min_cut_max_flow.py' adding 'boost_adaptbx/graph/minimum_cut_enumerate.py' adding 'boost_adaptbx/graph/utility.py' adding 'cbflib_adaptbx/__init__.py' adding 'cbflib_adaptbx/copy_files.py' adding 'cbflib_adaptbx/exercise_compression.py' adding 'cbflib_adaptbx/run_tests.py' adding 'cbflib_adaptbx/command_line/__init__.py' adding 'cbflib_adaptbx/command_line/dump.py' adding 'ccp4io_adaptbx/__init__.py' adding 'ccp4io_adaptbx/copy_files.py' adding 'ccp4io_adaptbx/tst.py' adding 'cctbx/__init__.py' adding 'cctbx/adptbx.py' adding 'cctbx/anharmonic.py' adding 'cctbx/crystal_orientation.py' adding 'cctbx/dmtbx.py' adding 'cctbx/euclidean_model_matching.py' adding 'cctbx/french_wilson.py' adding 'cctbx/libtbx_refresh.py' adding 'cctbx/math_module.py' adding 'cctbx/multipolar.py' adding 'cctbx/r_free_utils.py' adding 'cctbx/run_examples.py' adding 'cctbx/run_tests.py' adding 'cctbx/statistics.py' adding 'cctbx/symmetry_search.py' adding 'cctbx/translation_search.py' adding 'cctbx/adp_restraints/__init__.py' adding 'cctbx/adp_restraints/energies.py' adding 'cctbx/adp_restraints/flags.py' adding 'cctbx/adp_restraints/tst_ext.py' adding 'cctbx/array_family/__init__.py' adding 'cctbx/array_family/flex.py' adding 'cctbx/command_line/__init__.py' adding 'cctbx/command_line/auto_sharpen.py' adding 'cctbx/command_line/brehm_diederichs.py' adding 'cctbx/command_line/cctbx_test_nightly.py' adding 'cctbx/command_line/cod_select_and_pickle.py' adding 'cctbx/command_line/diffuse.py' adding 'cctbx/command_line/eltbx.show_fp_fdp.py' adding 'cctbx/command_line/euclidean_model_matching.py' adding 'cctbx/command_line/find_reticular_twin_laws.py' adding 'cctbx/command_line/form_factor_query.py' adding 'cctbx/command_line/precession_view.py' adding 'cctbx/command_line/qscore.py' adding 'cctbx/command_line/samosa_join.py' adding 'cctbx/command_line/samosa_scale.py' adding 'cctbx/command_line/segment_and_split_map.py' adding 'cctbx/command_line/space_group_info.py' adding 'cctbx/command_line/structure_factor_timings.py' adding 'cctbx/command_line/subgroups.py' adding 'cctbx/command_line/version.py' adding 'cctbx/command_line/wavelength_units.py' adding 'cctbx/covariance/__init__.py' adding 'cctbx/crystal/__init__.py' adding 'cctbx/crystal/burzlaff_zimmermann_dewolff.py' adding 'cctbx/crystal/close_packing.py' adding 'cctbx/crystal/coordination_sequences.py' adding 'cctbx/crystal/direct_space_asu.py' adding 'cctbx/crystal/distance_based_connectivity.py' adding 'cctbx/crystal/find_best_cell.py' adding 'cctbx/crystal/reindex.py' adding 'cctbx/crystal/super_cell.py' adding 'cctbx/crystal/tst_distance_based_connectivity.py' adding 'cctbx/crystal/tst_ext.py' adding 'cctbx/crystal/tst_super_cell.py' adding 'cctbx/development/__init__.py' adding 'cctbx/development/approx_amplitude_vs_resolution.py' adding 'cctbx/development/cns_density_modification.py' adding 'cctbx/development/create_models_or_maps.py' adding 'cctbx/development/debug_utils.py' adding 'cctbx/development/direct_or_fft.py' adding 'cctbx/development/electron_density_sampling.py' adding 'cctbx/development/fmt_utils.py' adding 'cctbx/development/github.py' adding 'cctbx/development/make_cns_input.py' adding 'cctbx/development/make_settings.py' adding 'cctbx/development/random_structure.py' adding 'cctbx/development/run_shelx.py' adding 'cctbx/development/run_shelx76.py' adding 'cctbx/development/space_group_option_parser.py' adding 'cctbx/development/structure_factor_utils.py' adding 'cctbx/development/tst_cns_epsilon.py' adding 'cctbx/development/tst_cns_hl.py' adding 'cctbx/eltbx/__init__.py' adding 'cctbx/eltbx/attenuation_coefficient.py' adding 'cctbx/eltbx/chemical_elements.py' adding 'cctbx/eltbx/covalent_radii.py' adding 'cctbx/eltbx/distance_based_connectivity.py' adding 'cctbx/eltbx/e_scattering.py' adding 'cctbx/eltbx/formula.py' adding 'cctbx/eltbx/fp_fdp.py' adding 'cctbx/eltbx/gaussian_fit.py' adding 'cctbx/eltbx/henke.py' adding 'cctbx/eltbx/icsd_radii.py' adding 'cctbx/eltbx/neutron.py' adding 'cctbx/eltbx/read_custom_scattering_dict.py' adding 'cctbx/eltbx/sasaki.py' adding 'cctbx/eltbx/tiny_pse.py' adding 'cctbx/eltbx/van_der_waals_radii.py' adding 'cctbx/eltbx/wavelengths.py' adding 'cctbx/eltbx/development/__init__.py' adding 'cctbx/eltbx/development/combine_fits.py' adding 'cctbx/eltbx/development/create_n_gaussian_raw_cpp.py' adding 'cctbx/eltbx/development/e_scattering_plots.py' adding 'cctbx/eltbx/development/format_gaussian_fits.py' adding 'cctbx/eltbx/development/hydrogen_plots.py' adding 'cctbx/eltbx/development/itvc_approx.py' adding 'cctbx/eltbx/development/itvc_cross_validation.py' adding 'cctbx/eltbx/development/itvc_fits.py' adding 'cctbx/eltbx/development/itvc_kissel.py' adding 'cctbx/eltbx/development/itvc_section61_io.py' adding 'cctbx/eltbx/development/kissel_fits.py' adding 'cctbx/eltbx/development/kissel_io.py' adding 'cctbx/eltbx/development/rez_rez_grant.py' adding 'cctbx/eltbx/xray_scattering/__init__.py' adding 'cctbx/examples/__init__.py' adding 'cctbx/examples/adp_symmetry_constraints.py' adding 'cctbx/examples/all_axes.py' adding 'cctbx/examples/analyze_adp.py' adding 'cctbx/examples/ccp4_map.py' adding 'cctbx/examples/change_hand_p31.py' adding 'cctbx/examples/convert_ccp4_symop_lib.py' adding 'cctbx/examples/cr2o3_consistency_checks.py' adding 'cctbx/examples/cr2o3_primitive_cell.py' adding 'cctbx/examples/exp_i_alpha_derivatives.py' adding 'cctbx/examples/f_model_example.py' adding 'cctbx/examples/fft_map_electron_density_around_atom.py' adding 'cctbx/examples/find_distances_using_cpp_objects.py' adding 'cctbx/examples/find_sys_abs_equiv_space_groups.py' adding 'cctbx/examples/g_exp_i_alpha_derivatives.py' adding 'cctbx/examples/g_exp_i_partial_derivatives.py' adding 'cctbx/examples/getting_started.py' adding 'cctbx/examples/hirshfeld_test.py' adding 'cctbx/examples/le_page_1982_vs_lebedev_2005.py' adding 'cctbx/examples/lebedev_2005_perturbation.py' adding 'cctbx/examples/list_non_principal_continuous_shifts.py' adding 'cctbx/examples/location_part.py' adding 'cctbx/examples/map_skewness.py' adding 'cctbx/examples/maximum_subgroups.py' adding 'cctbx/examples/miller_common_sets.py' adding 'cctbx/examples/miller_transform.py' adding 'cctbx/examples/neutron_structure_factors.py' adding 'cctbx/examples/phase_o_phrenia.py' adding 'cctbx/examples/quartz_structure.py' adding 'cctbx/examples/random_f_calc.py' adding 'cctbx/examples/random_puckers.py' adding 'cctbx/examples/reduced_cell_two_folds.py' adding 'cctbx/examples/site_symmetry_constraints.py' adding 'cctbx/examples/site_symmetry_table.py' adding 'cctbx/examples/space_group_matrices.py' adding 'cctbx/examples/space_subgroups.py' adding 'cctbx/examples/steve_collins.py' adding 'cctbx/examples/structure_factor_derivatives.py' adding 'cctbx/examples/structure_factor_derivatives_2.py' adding 'cctbx/examples/structure_factor_derivatives_3.py' adding 'cctbx/examples/structure_factor_derivatives_4.py' adding 'cctbx/examples/sub_group_graph.py' adding 'cctbx/examples/symops_530.py' adding 'cctbx/examples/trigonal_r_vs_tetragonal_i.py' adding 'cctbx/examples/tst_exp_i_alpha_derivatives.py' adding 'cctbx/examples/tst_g_exp_i_alpha_derivatives.py' adding 'cctbx/examples/tst_phase_o_phrenia.py' adding 'cctbx/examples/tst_space_subgroups.py' adding 'cctbx/examples/tst_structure_factor_derivatives.py' adding 'cctbx/examples/tst_structure_factor_derivatives_2.py' adding 'cctbx/examples/tst_structure_factor_derivatives_3.py' adding 'cctbx/examples/tst_structure_factor_derivatives_4.py' adding 'cctbx/examples/unit_cell_minimizers.py' adding 'cctbx/examples/unit_cell_refinement.py' adding 'cctbx/examples/view_fft_map.py' adding 'cctbx/examples/merging/__init__.py' adding 'cctbx/examples/merging/data_subset.py' adding 'cctbx/examples/merging/data_utilities.py' adding 'cctbx/examples/merging/show_results.py' adding 'cctbx/examples/merging/sigma_correction.py' adding 'cctbx/examples/merging/task4.py' adding 'cctbx/examples/merging/test1.py' adding 'cctbx/examples/merging/test_cc_half.py' adding 'cctbx/examples/merging/test_levenberg_sparse.py' adding 'cctbx/examples/merging/tst_permutations.py' adding 'cctbx/examples/merging/samosa/__init__.py' adding 'cctbx/examples/merging/samosa/join.py' adding 'cctbx/examples/merging/samosa/per_lattice_postrefinement.py' adding 'cctbx/examples/merging/samosa/scale.py' adding 'cctbx/examples/structure_factor_calculus/__init__.py' adding 'cctbx/examples/structure_factor_calculus/site_derivatives.py' adding 'cctbx/examples/structure_factor_calculus/sites_derivatives.py' adding 'cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py' adding 'cctbx/examples/structure_factor_calculus/u_star_derivatives.py' adding 'cctbx/geometry/__init__.py' adding 'cctbx/geometry_restraints/__init__.py' adding 'cctbx/geometry_restraints/auto_linking_types.py' adding 'cctbx/geometry_restraints/base_geometry.py' adding 'cctbx/geometry_restraints/distance_least_squares.py' adding 'cctbx/geometry_restraints/energies.py' adding 'cctbx/geometry_restraints/flags.py' adding 'cctbx/geometry_restraints/lbfgs.py' adding 'cctbx/geometry_restraints/linking_class.py' adding 'cctbx/geometry_restraints/manager.py' adding 'cctbx/geometry_restraints/process_nonbonded_proxies.py' adding 'cctbx/geometry_restraints/standard_cif_links.py' adding 'cctbx/geometry_restraints/tst_angle_derivs.py' adding 'cctbx/geometry_restraints/tst_ext.py' adding 'cctbx/geometry_restraints/tst_motif.py' adding 'cctbx/geometry_restraints/tst_process_nonbonded_proxies.py' adding 'cctbx/geometry_restraints/tst_proxy_registry.py' adding 'cctbx/macro_mol/__init__.py' adding 'cctbx/macro_mol/rotation_parameters.py' adding 'cctbx/maptbx/__init__.py' adding 'cctbx/maptbx/auto_sharpen.py' adding 'cctbx/maptbx/box.py' adding 'cctbx/maptbx/fsc_curve.py' adding 'cctbx/maptbx/map_symmetry.py' adding 'cctbx/maptbx/mask.py' adding 'cctbx/maptbx/mem.py' adding 'cctbx/maptbx/minimization.py' adding 'cctbx/maptbx/prepare_map_for_docking.py' adding 'cctbx/maptbx/prepare_map_for_refinement.py' adding 'cctbx/maptbx/qscore.py' adding 'cctbx/maptbx/real_space_refinement_simple.py' adding 'cctbx/maptbx/refine_scales_errors.py' adding 'cctbx/maptbx/refine_sharpening.py' adding 'cctbx/maptbx/resolution_from_map_and_model.py' adding 'cctbx/maptbx/segment_and_split_map.py' adding 'cctbx/maptbx/servalcat_difference_map.py' adding 'cctbx/maptbx/tst_MapPeakLocator.py' adding 'cctbx/maptbx/tst_asymmetric_map.py' adding 'cctbx/maptbx/tst_atom_curves.py' adding 'cctbx/maptbx/tst_atom_radius_as_central_peak_width.py' adding 'cctbx/maptbx/tst_bcr.py' adding 'cctbx/maptbx/tst_ccp.py' adding 'cctbx/maptbx/tst_get_percentile_cutoffs.py' adding 'cctbx/maptbx/tst_interpolation.py' adding 'cctbx/maptbx/tst_interpolation_2.py' adding 'cctbx/maptbx/tst_loft.py' adding 'cctbx/maptbx/tst_map_peak_3d_as_2d.py' adding 'cctbx/maptbx/tst_mask.py' adding 'cctbx/maptbx/tst_peak_volume_estimate.py' adding 'cctbx/maptbx/tst_qscore.py' adding 'cctbx/maptbx/tst_real_space_refinement_simple.py' adding 'cctbx/maptbx/tst_resolution_from_map_and_model.py' adding 'cctbx/maptbx/tst_target_and_gradients.py' adding 'cctbx/maptbx/bcr/__init__.py' adding 'cctbx/maptbx/bcr/bcr.py' adding 'cctbx/maptbx/bcr/compute_tables.py' adding 'cctbx/maptbx/bcr/qmap.py' adding 'cctbx/maptbx/bcr/tst_adp_refine.py' adding 'cctbx/maptbx/bcr/tst_example.py' adding 'cctbx/maptbx/bcr/tst_qmap_02.py' adding 'cctbx/maptbx/bcr/tst_table.py' adding 'cctbx/maptbx/bcr/tst_two_atoms.py' adding 'cctbx/maptbx/bcr/tst_vrm.py' adding 'cctbx/maptbx/bcr/tst_vrm2.py' adding 'cctbx/masks/__init__.py' adding 'cctbx/merging/__init__.py' adding 'cctbx/merging/brehm_diederichs.py' adding 'cctbx/miller/__init__.py' adding 'cctbx/miller/display.py' adding 'cctbx/miller/reindexing.py' adding 'cctbx/miller/tst_map_to_asu_isym.py' adding 'cctbx/miller/tst_reindexing.py' adding 'cctbx/neutron/__init__.py' adding 'cctbx/omz/__init__.py' adding 'cctbx/omz/bfgs.py' adding 'cctbx/omz/cif_refine.py' adding 'cctbx/omz/cod_refine.py' adding 'cctbx/omz/cod_select_and_pickle.py' adding 'cctbx/omz/dev.py' adding 'cctbx/omz/eval_iso_vs_refined.py' adding 'cctbx/omz/pdb_dev.py' adding 'cctbx/omz/tardy_adaptor.py' adding 'cctbx/omz/tst_bfgs.py' adding 'cctbx/omz/tst_dev.py' adding 'cctbx/regression/__init__.py' adding 'cctbx/regression/tst_adp_aniso_restraints.py' adding 'cctbx/regression/tst_adp_constraints.py' adding 'cctbx/regression/tst_adp_constraints_cartesian.py' adding 'cctbx/regression/tst_amplitude_normalisation.py' adding 'cctbx/regression/tst_change_basis.py' adding 'cctbx/regression/tst_connectivity.py' adding 'cctbx/regression/tst_connectivity_allsym.py' adding 'cctbx/regression/tst_coordination_sequences.py' adding 'cctbx/regression/tst_create_models_or_maps.py' adding 'cctbx/regression/tst_crystal.py' adding 'cctbx/regression/tst_crystal_asu_clusters.py' adding 'cctbx/regression/tst_crystal_close_packing.py' adding 'cctbx/regression/tst_diffuse.py' adding 'cctbx/regression/tst_direct_scaling.py' adding 'cctbx/regression/tst_direct_space_asu.py' adding 'cctbx/regression/tst_emma.py' adding 'cctbx/regression/tst_expand_to_p1.py' adding 'cctbx/regression/tst_f_model.py' adding 'cctbx/regression/tst_fast_nv1995.py' adding 'cctbx/regression/tst_fcalc_fft_stability.py' adding 'cctbx/regression/tst_find_best_cell.py' adding 'cctbx/regression/tst_fourier_transform_real_part_at_x.py' adding 'cctbx/regression/tst_french_wilson.py' adding 'cctbx/regression/tst_geometry_restraints.py' adding 'cctbx/regression/tst_geometry_restraints_2.py' adding 'cctbx/regression/tst_geometry_restraints_lbfgs.py' adding 'cctbx/regression/tst_grm_modifications.py' adding 'cctbx/regression/tst_grm_modifications_rm.py' adding 'cctbx/regression/tst_grm_pickling.py' adding 'cctbx/regression/tst_grouped_data.py' adding 'cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py' adding 'cctbx/regression/tst_krivy_gruber.py' adding 'cctbx/regression/tst_loc_res.py' adding 'cctbx/regression/tst_map_is_periodic.py' adding 'cctbx/regression/tst_map_weights_for_symmetry_summation.py' adding 'cctbx/regression/tst_maptbx_box.py' adding 'cctbx/regression/tst_maptbx_mask.py' adding 'cctbx/regression/tst_maptbx_structure_factors.py' adding 'cctbx/regression/tst_match_bijvoet_mates.py' adding 'cctbx/regression/tst_math_module.py' adding 'cctbx/regression/tst_mem.py' adding 'cctbx/regression/tst_mem_2.py' adding 'cctbx/regression/tst_miller.py' adding 'cctbx/regression/tst_miller_data_manipulation.py' adding 'cctbx/regression/tst_miller_double_step_filtration.py' adding 'cctbx/regression/tst_miller_fft_map.py' adding 'cctbx/regression/tst_miller_lookup_utils.py' adding 'cctbx/regression/tst_miller_merge_equivalents.py' adding 'cctbx/regression/tst_miller_statistics.py' adding 'cctbx/regression/tst_niggli_reduction_cpp.py' adding 'cctbx/regression/tst_pair_asu_table.py' adding 'cctbx/regression/tst_pointgroup_tools.py' adding 'cctbx/regression/tst_prepare_map_for_docking.py' adding 'cctbx/regression/tst_r_free_utils.py' adding 'cctbx/regression/tst_reciprocal_space_asu.py' adding 'cctbx/regression/tst_refine_xray_curvs.py' adding 'cctbx/regression/tst_reflection_statistics.py' adding 'cctbx/regression/tst_sampled_model_density.py' adding 'cctbx/regression/tst_sf_low_res_accuracy.py' adding 'cctbx/regression/tst_sgtbx.py' adding 'cctbx/regression/tst_sgtbx_denominators.py' adding 'cctbx/regression/tst_sgtbx_harker.py' adding 'cctbx/regression/tst_sgtbx_lattice_symmetry.py' adding 'cctbx/regression/tst_sgtbx_site_constraints.py' adding 'cctbx/regression/tst_sgtbx_special_op_simplifier.py' adding 'cctbx/regression/tst_sgtbx_subgroups.py' adding 'cctbx/regression/tst_sgtbx_tidy_pickling.py' adding 'cctbx/regression/tst_show_cosets.py' adding 'cctbx/regression/tst_space_group_type_tidy_cb_op_t.py' adding 'cctbx/regression/tst_sphericity.py' adding 'cctbx/regression/tst_statistics_graphs.py' adding 'cctbx/regression/tst_triplet_generator.py' adding 'cctbx/regression/tst_twin_target.py' adding 'cctbx/regression/tst_wavelength_units.py' adding 'cctbx/regression/tst_web_change_basis.py' adding 'cctbx/regression/tst_weighting_schemes.py' adding 'cctbx/regression/tst_wilson_plot.py' adding 'cctbx/regression/tst_xray.py' adding 'cctbx/regression/tst_xray_derivatives.py' adding 'cctbx/regression/tst_xray_fast_gradients.py' adding 'cctbx/regression/tst_xray_minimization.py' adding 'cctbx/regression/tst_xray_minimization_failure.py' adding 'cctbx/regression/tst_xray_target_functors.py' adding 'cctbx/sgtbx/__init__.py' adding 'cctbx/sgtbx/bravais_types.py' adding 'cctbx/sgtbx/cosets.py' adding 'cctbx/sgtbx/harker.py' adding 'cctbx/sgtbx/lattice_symmetry.py' adding 'cctbx/sgtbx/literal_description.py' adding 'cctbx/sgtbx/plane_groups.py' adding 'cctbx/sgtbx/pointgroup_tools.py' adding 'cctbx/sgtbx/rational_matrices_point_groups.py' adding 'cctbx/sgtbx/reticular_pg_tools.py' adding 'cctbx/sgtbx/reticular_twin_laws.py' adding 'cctbx/sgtbx/show_cosets.py' adding 'cctbx/sgtbx/sub_lattice_tools.py' adding 'cctbx/sgtbx/subgroups.py' adding 'cctbx/sgtbx/symbol_confidence.py' adding 'cctbx/sgtbx/sys_abs_equiv.py' adding 'cctbx/sgtbx/direct_space_asu/__init__.py' adding 'cctbx/sgtbx/direct_space_asu/check_redundancies.py' adding 'cctbx/sgtbx/direct_space_asu/cut_plane.py' adding 'cctbx/sgtbx/direct_space_asu/facet_analysis.py' adding 'cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py' adding 'cctbx/sgtbx/direct_space_asu/reference_table.py' adding 'cctbx/sgtbx/direct_space_asu/short_cuts.py' adding 'cctbx/sgtbx/direct_space_asu/proto/__init__.py' adding 'cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py' adding 'cctbx/sgtbx/direct_space_asu/proto/tst_asu.py' adding 'cctbx/source_generators/__init__.py' adding 'cctbx/source_generators/flex_fwd_h.py' adding 'cctbx/source_generators/eltbx/__init__.py' adding 'cctbx/source_generators/eltbx/generate_henke_cpp.py' adding 'cctbx/source_generators/eltbx/generate_sasaki_cpp.py' adding 'cctbx/uctbx/__init__.py' adding 'cctbx/uctbx/gruber_1973.py' adding 'cctbx/uctbx/gruber_1973_table_1.py' adding 'cctbx/uctbx/krivy_gruber_1976.py' adding 'cctbx/uctbx/reduction_base.py' adding 'cctbx/uctbx/determine_unit_cell/__init__.py' adding 'cctbx/web/__init__.py' adding 'cctbx/web/all_axes.py' adding 'cctbx/web/browse_settings.py' adding 'cctbx/web/cgi_utils.py' adding 'cctbx/web/change_basis.py' adding 'cctbx/web/change_hand.py' adding 'cctbx/web/change_setting.py' adding 'cctbx/web/dispatcher.py' adding 'cctbx/web/emma.py' adding 'cctbx/web/explore_symmetry.py' adding 'cctbx/web/frac_cart.py' adding 'cctbx/web/io_utils.py' adding 'cctbx/web/iotbx_cif_validate.py' adding 'cctbx/web/lattice_symmetry.py' adding 'cctbx/web/libtbx_help.py' adding 'cctbx/web/multiple_cell.py' adding 'cctbx/web/phase_o_phrenia.py' adding 'cctbx/web/replay.py' adding 'cctbx/web/shelx.py' adding 'cctbx/web/structure_factors.py' adding 'cctbx/web/structure_factors_pdb.py' adding 'cctbx/web/wyckoff.py' adding 'cctbx/web/asu_gallery/__init__.py' adding 'cctbx/web/asu_gallery/guide_to_notation.py' adding 'cctbx/web/asu_gallery/jv_asu.py' adding 'cctbx/web/asu_gallery/jv_index.py' adding 'cctbx/web/asu_gallery/jvx.py' adding 'cctbx/web/asu_gallery/web_links.py' adding 'cctbx/xray/__init__.py' adding 'cctbx/xray/ext.py' adding 'cctbx/xray/minimization.py' adding 'cctbx/xray/observation_types.py' adding 'cctbx/xray/scatterer.py' adding 'cctbx/xray/structure.py' adding 'cctbx/xray/target_functors.py' adding 'cctbx/xray/weighting_schemes.py' adding 'cctbx/xray/observations/__init__.py' adding 'cctbx/xray/observations/tst_observations.py' adding 'cctbx/xray/structure_factors/__init__.py' adding 'cctbx/xray/structure_factors/algorithm.py' adding 'cctbx/xray/structure_factors/from_scatterers.py' adding 'cctbx/xray/structure_factors/from_scatterers_direct.py' adding 'cctbx/xray/structure_factors/from_scatterers_direct_parallel.py' adding 'cctbx/xray/structure_factors/from_scatterers_fft.py' adding 'cctbx/xray/structure_factors/global_counters.py' adding 'cctbx/xray/structure_factors/gradient_flags.py' adding 'cctbx/xray/structure_factors/gradients.py' adding 'cctbx/xray/structure_factors/gradients_base.py' adding 'cctbx/xray/structure_factors/gradients_direct.py' adding 'cctbx/xray/structure_factors/gradients_fft.py' adding 'cctbx/xray/structure_factors/manager.py' adding 'cctbx/xray/structure_factors/misc.py' adding 'cctbx/xray/targets/__init__.py' adding 'cctbx/xray/targets/r1.py' adding 'cctbx/xray/targets/tst_r1.py' adding 'cctbx/xray/targets/tst_shelxl_wght_ls.py' adding 'cctbx-2023.12.dist-info/licenses/LICENSE.txt' adding 'cctbx_website/__init__.py' adding 'cctbx_website/libtbx_refresh.py' adding 'cctbx_website/run_tests.py' adding 'cctbx_website/command_line/__init__.py' adding 'cctbx_website/command_line/comment_to_docstring.py' adding 'cctbx_website/command_line/edit_for_boost.py' adding 'cctbx_website/command_line/edit_html.py' adding 'cctbx_website/command_line/extract_script_from_html_cctbx_doc.py' adding 'cctbx_website/command_line/run_pdoc_cctbx_api.py' adding 'cctbx_website/command_line/tst_comment_to_docstring.py' adding 'cctbx_website/regression/__init__.py' adding 'cctbx_website/regression/exercise.py' adding 'cctbx_website/regression/tst_10_doc_programming_tips_1.py' adding 'cctbx_website/regression/tst_11_script_1.py' adding 'cctbx_website/regression/tst_12_script_compare_ss.py' adding 'cctbx_website/regression/tst_13_script_ideal_ss.py' adding 'cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py' adding 'cctbx_website/regression/tst_15_doc_models_hierarchy.py' adding 'cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py' adding 'cctbx_website/regression/tst_17_script_rfactors.py' adding 'cctbx_website/regression/tst_18_doc_programming_tips_2.py' adding 'cctbx_website/regression/tst_19_doc_programming_tips_3.py' adding 'cctbx_website/regression/tst_1_template.py' adding 'cctbx_website/regression/tst_2_doc_hlo_intro.py' adding 'cctbx_website/regression/tst_3_doc_hlo_model_manager.py' adding 'cctbx_website/regression/tst_4_doc_hlo_data_manager.py' adding 'cctbx_website/regression/tst_5_doc_hlo_map_manager.py' adding 'cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py' adding 'cctbx_website/regression/tst_7_doc_low_flex_advanced.py' adding 'cctbx_website/regression/tst_8_doc_maps_intro.py' adding 'cctbx_website/regression/tst_9_doc_maps_boxing.py' adding 'cctbx_website/regression/tst_py_from_html.py' adding 'cma_es/__init__.py' adding 'cma_es/cma_es_interface.py' adding 'cma_es/run_tests.py' adding 'cma_es/tst_cma_es.py' adding 'cootbx/__init__.py' adding 'cootbx/hydrogens_button.py' adding 'cootbx/interactive_edit.py' adding 'cootbx/ligand_checklist.py' adding 'cootbx/simple_zoom_list.py' adding 'cootbx/validation_lists.py' adding 'cootbx/view_refinement.py' adding 'cootbx/watch_file.py' adding 'cootbx/xmlrpc_server.py' adding 'fable/__init__.py' adding 'fable/cout.py' adding 'fable/equivalence.py' adding 'fable/intrinsics.py' adding 'fable/read.py' adding 'fable/run_tests.py' adding 'fable/simple_compilation.py' adding 'fable/tokenization.py' adding 'fable/tst_cout.py' adding 'fable/tst_cout_compile.py' adding 'fable/tst_equivalence.py' adding 'fable/tst_ext.py' adding 'fable/tst_read.py' adding 'fable/utils.py' adding 'fable/command_line/__init__.py' adding 'fable/command_line/cout.py' adding 'fable/command_line/fem_include_search_paths.py' adding 'fable/command_line/insert_write_at_start_of_each_procedure.py' adding 'fable/command_line/read.py' adding 'fable/command_line/show_calls.py' adding 'fable/command_line/split.py' adding 'fast_linalg/__init__.py' adding 'fftw3tbx/__init__.py' adding 'fftw3tbx/libtbx_refresh.py' adding 'fftw3tbx/tst_ext.py' adding 'gltbx/__init__.py' adding 'gltbx/extract_opengl_specs.py' adding 'gltbx/fonts.py' adding 'gltbx/generate_defines_bpl.py' adding 'gltbx/generate_fonts_ucs_cpp.py' adding 'gltbx/generate_functions_bpl.py' adding 'gltbx/gl.py' adding 'gltbx/gl_managed.py' adding 'gltbx/glu.py' adding 'gltbx/images.py' adding 'gltbx/libtbx_refresh.py' adding 'gltbx/quadrics.py' adding 'gltbx/run_tests.py' adding 'gltbx/tst.py' adding 'gltbx/tst_ellipsoids.py' adding 'gltbx/tst_fonts.py' adding 'gltbx/tst_viewer_utils.py' adding 'gltbx/util.py' adding 'gltbx/viewer_utils.py' adding 'gltbx/wx_cube.py' adding 'gltbx/wx_ellipsoids_test.py' adding 'gltbx/wx_motion_on_tab.py' adding 'gltbx/wx_scene.py' adding 'gltbx/wx_viewer.py' adding 'gltbx/wx_viewer_example.py' adding 'gltbx/wx_viewer_leapmotion.py' adding 'gltbx/wx_viewers_images.py' adding 'gltbx/command_line/__init__.py' adding 'gltbx/command_line/try_imports.py' adding 'iotbx/__init__.py' adding 'iotbx/builders.py' adding 'iotbx/builders_depending_on_smtbx.py' adding 'iotbx/cif_mtz_data_labels.py' adding 'iotbx/cli_parser.py' adding 'iotbx/crystal_symmetry_from_any.py' adding 'iotbx/csv_utils.py' adding 'iotbx/data_plots.py' adding 'iotbx/extract_xtal_data.py' adding 'iotbx/file_reader.py' adding 'iotbx/format.py' adding 'iotbx/libtbx_refresh.py' adding 'iotbx/logfiles.py' adding 'iotbx/map_manager.py' adding 'iotbx/map_model_manager.py' adding 'iotbx/map_tools.py' adding 'iotbx/merging_statistics.py' adding 'iotbx/mtrix_biomt.py' adding 'iotbx/option_parser.py' adding 'iotbx/phases.py' adding 'iotbx/phil.py' adding 'iotbx/poscar.py' adding 'iotbx/pymol.py' adding 'iotbx/ranges.py' adding 'iotbx/reflection_file_converter.py' adding 'iotbx/reflection_file_editor.py' adding 'iotbx/reflection_file_reader.py' adding 'iotbx/reflection_file_utils.py' adding 'iotbx/run_tests.py' adding 'iotbx/simple_parser.py' adding 'iotbx/symmetry.py' adding 'iotbx/table_one.py' adding 'iotbx/wildcard.py' adding 'iotbx/PrettyPrint/__init__.py' adding 'iotbx/PrettyPrint/tables.py' adding 'iotbx/bioinformatics/__init__.py' adding 'iotbx/bioinformatics/alignment_as_hsearch.py' adding 'iotbx/bioinformatics/ebi_wu_blast_xml.py' adding 'iotbx/bioinformatics/homologues.py' adding 'iotbx/bioinformatics/local_blast.py' adding 'iotbx/bioinformatics/ncbi_blast_xml.py' adding 'iotbx/bioinformatics/pdb_info.py' adding 'iotbx/bioinformatics/pubmed.py' adding 'iotbx/bioinformatics/structure.py' adding 'iotbx/bioinformatics/xmlbuild.py' adding 'iotbx/ccp4_map/__init__.py' adding 'iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py' adding 'iotbx/ccp4_map/tst.py' adding 'iotbx/cif/__init__.py' adding 'iotbx/cif/builders.py' adding 'iotbx/cif/citations.py' adding 'iotbx/cif/cod_tools.py' adding 'iotbx/cif/crystal_symmetry_from_cif.py' adding 'iotbx/cif/errors.py' adding 'iotbx/cif/geometry.py' adding 'iotbx/cif/model.py' adding 'iotbx/cif/restraint_file_merge.py' adding 'iotbx/cif/restraints.py' adding 'iotbx/cif/validation.py' adding 'iotbx/cns/__init__.py' adding 'iotbx/cns/crystal_symmetry_from_inp.py' adding 'iotbx/cns/crystal_symmetry_from_sdb.py' adding 'iotbx/cns/crystal_symmetry_utils.py' adding 'iotbx/cns/index_fobs_sigma_reader.py' adding 'iotbx/cns/miller_array.py' adding 'iotbx/cns/pdb_remarks.py' adding 'iotbx/cns/reflection_reader.py' adding 'iotbx/cns/sdb_reader.py' adding 'iotbx/cns/sdb_writer.py' adding 'iotbx/cns/space_group_symbols.py' adding 'iotbx/cns/tst_cns.py' adding 'iotbx/cns/xray_structure.py' adding 'iotbx/command_line/__init__.py' adding 'iotbx/command_line/biomt_reconstruction.py' adding 'iotbx/command_line/blast_pdb.py' adding 'iotbx/command_line/build_phil_cache.py' adding 'iotbx/command_line/cbf_read.py' adding 'iotbx/command_line/cif.as_miller_arrays.py' adding 'iotbx/command_line/cif.as_xray_structure.py' adding 'iotbx/command_line/cif.validate.py' adding 'iotbx/command_line/cif_as_pdb.py' adding 'iotbx/command_line/cns.reflection_reader.py' adding 'iotbx/command_line/cns.sdb_reader.py' adding 'iotbx/command_line/cns.transfer_crystal_symmetry.py' adding 'iotbx/command_line/cns_as_mtz.py' adding 'iotbx/command_line/crystal_symmetry_from_any.py' adding 'iotbx/command_line/csv_as_mtz.py' adding 'iotbx/command_line/dano_as_amplitudes.py' adding 'iotbx/command_line/detector_image_as_png.py' adding 'iotbx/command_line/distance_least_squares.py' adding 'iotbx/command_line/dtrek.to_cns.py' adding 'iotbx/command_line/effective_resolution.py' adding 'iotbx/command_line/emma.py' adding 'iotbx/command_line/explore_metric_symmetry.py' adding 'iotbx/command_line/export_scalepack_unmerged.py' adding 'iotbx/command_line/file_reader.py' adding 'iotbx/command_line/flip_symmetric_amino_acids.py' adding 'iotbx/command_line/french_wilson.py' adding 'iotbx/command_line/get_pubmed_citation.py' adding 'iotbx/command_line/lattice_symmetry.py' adding 'iotbx/command_line/merging_statistics.py' adding 'iotbx/command_line/mtrix_reconstruction.py' adding 'iotbx/command_line/mtz.dump.py' adding 'iotbx/command_line/mtz_as_cif.py' adding 'iotbx/command_line/patterson_map.py' adding 'iotbx/command_line/pdb.as_xray_structure.py' adding 'iotbx/command_line/pdb.b_factor_stats.py' adding 'iotbx/command_line/pdb.box_around_molecule.py' adding 'iotbx/command_line/pdb.hierarchy.py' adding 'iotbx/command_line/pdb.insert_scale_records.py' adding 'iotbx/command_line/pdb.join_fragment_files.py' adding 'iotbx/command_line/pdb.link_as_geometry_restraints_edits.py' adding 'iotbx/command_line/pdb.print_sequence.py' adding 'iotbx/command_line/pdb.superpose_atoms_by_name.py' adding 'iotbx/command_line/pdb.superpose_centers_of_mass.py' adding 'iotbx/command_line/pdb_add_conformations.py' adding 'iotbx/command_line/pdb_as_cif.py' adding 'iotbx/command_line/pdb_as_fasta.py' adding 'iotbx/command_line/pdb_cif_conversion.py' adding 'iotbx/command_line/pdb_get_citation.py' adding 'iotbx/command_line/pdb_labels_comparison.py' adding 'iotbx/command_line/pdb_labels_diff.py' adding 'iotbx/command_line/pdb_remediator.py' adding 'iotbx/command_line/pdb_show_connectivity.py' adding 'iotbx/command_line/pdb_split_models.py' adding 'iotbx/command_line/phil.py' adding 'iotbx/command_line/poscar_as_xray_structure.py' adding 'iotbx/command_line/r_free_flags_accumulation.py' adding 'iotbx/command_line/r_free_flags_as_cns.py' adding 'iotbx/command_line/r_free_flags_completion_simple.py' adding 'iotbx/command_line/reflection_file_converter.py' adding 'iotbx/command_line/reflection_file_editor.py' adding 'iotbx/command_line/reflection_file_reader.py' adding 'iotbx/command_line/reflection_statistics.py' adding 'iotbx/command_line/reindex.py' adding 'iotbx/command_line/shelx.as_cif.py' adding 'iotbx/command_line/shelx.as_xray_structure.py' adding 'iotbx/command_line/shelx.dump_as_python.py' adding 'iotbx/command_line/show_distances.py' adding 'iotbx/command_line/show_systematic_absences.py' adding 'iotbx/command_line/simple_map_coefficients.py' adding 'iotbx/command_line/sort_atoms.py' adding 'iotbx/command_line/split_data_cif.py' adding 'iotbx/command_line/symmetry_search.py' adding 'iotbx/command_line/unique_with_biomt.py' adding 'iotbx/command_line/xplor.map.show_summary.py' adding 'iotbx/data_manager/__init__.py' adding 'iotbx/data_manager/common.py' adding 'iotbx/data_manager/json.py' adding 'iotbx/data_manager/map_coefficients.py' adding 'iotbx/data_manager/miller_array.py' adding 'iotbx/data_manager/model.py' adding 'iotbx/data_manager/ncs_spec.py' adding 'iotbx/data_manager/phil.py' adding 'iotbx/data_manager/real_map.py' adding 'iotbx/data_manager/restraint.py' adding 'iotbx/data_manager/sequence.py' adding 'iotbx/data_manager/yaml.py' adding 'iotbx/detectors/__init__.py' adding 'iotbx/detectors/active_area_filter.py' adding 'iotbx/detectors/adsc.py' adding 'iotbx/detectors/adsc_minicbf.py' adding 'iotbx/detectors/adsc_module.py' adding 'iotbx/detectors/beam_center_convention.py' adding 'iotbx/detectors/bruker.py' adding 'iotbx/detectors/cbf.py' adding 'iotbx/detectors/cspad_detector_formats.py' adding 'iotbx/detectors/detectorbase.py' adding 'iotbx/detectors/dtrek.py' adding 'iotbx/detectors/edf.py' adding 'iotbx/detectors/eiger.py' adding 'iotbx/detectors/eiger_minicbf.py' adding 'iotbx/detectors/generic_detector.py' adding 'iotbx/detectors/hamamatsu.py' adding 'iotbx/detectors/image_from_http_request.py' adding 'iotbx/detectors/macscience.py' adding 'iotbx/detectors/mar.py' adding 'iotbx/detectors/marIP.py' adding 'iotbx/detectors/noir.py' adding 'iotbx/detectors/npy.py' adding 'iotbx/detectors/pilatus_minicbf.py' adding 'iotbx/detectors/pilatus_slice.py' adding 'iotbx/detectors/raxis.py' adding 'iotbx/detectors/raxis_nonsquare.py' adding 'iotbx/detectors/raxisbase.py' adding 'iotbx/detectors/saturn.py' adding 'iotbx/detectors/test_mar.py' adding 'iotbx/detectors/test_raxis2.py' adding 'iotbx/detectors/tst_adsc.py' adding 'iotbx/detectors/tst_cbf_comp_read_meth.py' adding 'iotbx/detectors/tst_debug_write.py' adding 'iotbx/detectors/tst_detectors.py' adding 'iotbx/detectors/tst_py_cbf.py' adding 'iotbx/detectors/url_support.py' adding 'iotbx/detectors/context/__init__.py' adding 'iotbx/detectors/context/camera_convention.py' adding 'iotbx/detectors/context/config_detector.py' adding 'iotbx/detectors/context/endstation.py' adding 'iotbx/detectors/context/endstation_max_iv_trial.py' adding 'iotbx/detectors/context/spot_xy_convention.py' adding 'iotbx/detectors/util/__init__.py' adding 'iotbx/detectors/util/filters.py' adding 'iotbx/dsn6/__init__.py' adding 'iotbx/dsn6/tst.py' adding 'iotbx/dtrek/__init__.py' adding 'iotbx/dtrek/crystal_symmetry_from_ref.py' adding 'iotbx/dtrek/dtrek_symmetry_dict.py' adding 'iotbx/dtrek/reflnlist_reader.py' adding 'iotbx/examples/__init__.py' adding 'iotbx/examples/direct_methods_light.py' adding 'iotbx/examples/libtbx_phil_examples.py' adding 'iotbx/examples/mtz_convert_free_to_work.py' adding 'iotbx/examples/mtz_free_flipper.py' adding 'iotbx/examples/pdb_hierarchy.py' adding 'iotbx/examples/pdb_shake.py' adding 'iotbx/examples/pdb_split_chains.py' adding 'iotbx/examples/pdb_symmetry_copies.py' adding 'iotbx/examples/pdb_tardy_conf_sampling_simple.py' adding 'iotbx/examples/pdb_to_map_simple.py' adding 'iotbx/examples/pdbx_mmcif_tutorial.py' adding 'iotbx/examples/prepare_model_for_rsr.py' adding 'iotbx/examples/recalculate_phenix_refine_r_factors.py' adding 'iotbx/examples/shelx_latt_sym_to_space_group_symbol.py' adding 'iotbx/examples/tst_mtz_free_flipper.py' adding 'iotbx/examples/pdb_truncate_to_ala/__init__.py' adding 'iotbx/examples/pdb_truncate_to_ala/tst.py' adding 'iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py' adding 'iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py' adding 'iotbx/examples/pdb_truncate_to_ala/v2_simple.py' adding 'iotbx/examples/pdb_truncate_to_ala/v3_better.py' adding 'iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py' adding 'iotbx/file_io/__init__.py' adding 'iotbx/file_io/_maps.py' adding 'iotbx/file_io/detection.py' adding 'iotbx/file_io/reader.py' adding 'iotbx/file_io/text_detection.py' adding 'iotbx/fullprof/__init__.py' adding 'iotbx/fullprof/read_pcr.py' adding 'iotbx/fullprof/write_pcr.py' adding 'iotbx/gui_tools/__init__.py' adding 'iotbx/gui_tools/cif_conversions.py' adding 'iotbx/gui_tools/import_data_and_flags.py' adding 'iotbx/gui_tools/models.py' adding 'iotbx/gui_tools/reflections.py' adding 'iotbx/gui_tools/tst.py' adding 'iotbx/kriber/__init__.py' adding 'iotbx/kriber/strudat.py' adding 'iotbx/kriber/tst_strudat.py' adding 'iotbx/mrcfile/__init__.py' adding 'iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py' adding 'iotbx/mtz/__init__.py' adding 'iotbx/mtz/crystal_symmetry_from_mtz.py' adding 'iotbx/mtz/extract_from_symmetry_lib.py' adding 'iotbx/mtz/tst.py' adding 'iotbx/mtz/tst_dano.py' adding 'iotbx/mtz/tst_ext.py' adding 'iotbx/mtz/tst_extract_from_symmetry_lib.py' adding 'iotbx/mtz/tst_miller_dict.py' adding 'iotbx/mtz/tst_unmerged.py' adding 'iotbx/ncs/__init__.py' adding 'iotbx/pdb/__init__.py' adding 'iotbx/pdb/aa_utils.py' adding 'iotbx/pdb/amino_acid_codes.py' adding 'iotbx/pdb/atom_name_interpretation.py' adding 'iotbx/pdb/atom_selection.py' adding 'iotbx/pdb/cryst1_interpretation.py' adding 'iotbx/pdb/crystal_symmetry_from_pdb.py' adding 'iotbx/pdb/download.py' adding 'iotbx/pdb/experiment_type.py' adding 'iotbx/pdb/extract_rfactors_resolutions_sigma.py' adding 'iotbx/pdb/fetch.py' adding 'iotbx/pdb/forward_compatible_pdb_cif_conversion.py' adding 'iotbx/pdb/hierarchy.py' adding 'iotbx/pdb/hybrid_36.py' adding 'iotbx/pdb/misc_records_output.py' adding 'iotbx/pdb/mmcif.py' adding 'iotbx/pdb/modified_aa_names.py' adding 'iotbx/pdb/modified_rna_dna_names.py' adding 'iotbx/pdb/nucleic_acid_codes.py' adding 'iotbx/pdb/pdb_v3_cif_conversion.py' adding 'iotbx/pdb/pdbe.py' adding 'iotbx/pdb/rcsb.py' adding 'iotbx/pdb/records.py' adding 'iotbx/pdb/remark_290_interpretation.py' adding 'iotbx/pdb/remark_2_interpretation.py' adding 'iotbx/pdb/remark_3_interpretation.py' adding 'iotbx/pdb/rna_dna_detection.py' adding 'iotbx/pdb/secondary_structure.py' adding 'iotbx/pdb/tst_atom_name_interpretation.py' adding 'iotbx/pdb/tst_atom_selection.py' adding 'iotbx/pdb/tst_atom_selection_string.py' adding 'iotbx/pdb/tst_ext.py' adding 'iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py' adding 'iotbx/pdb/tst_hierarchy.py' adding 'iotbx/pdb/tst_hierarchy_atom_sort.py' adding 'iotbx/pdb/tst_hierarchy_flip_symmetric.py' adding 'iotbx/pdb/tst_hierarchy_flip_symmetric_2.py' adding 'iotbx/pdb/tst_input_pickling.py' adding 'iotbx/pdb/tst_mmcif.py' adding 'iotbx/pdb/tst_mmcif_hierarchy.py' adding 'iotbx/pdb/tst_mmcif_hierarchy_2.py' adding 'iotbx/pdb/tst_pdb.py' adding 'iotbx/pdb/tst_read_mtrix_records_from_cif.py' adding 'iotbx/pdb/tst_rna_dna_atom_names.py' adding 'iotbx/pdb/tst_secondary_structure.py' adding 'iotbx/pdb/tst_secondary_structure_2.py' adding 'iotbx/pdb/tst_tls.py' adding 'iotbx/pdb/tst_utils.py' adding 'iotbx/pdb/utils.py' adding 'iotbx/pdb/web_service_api.py' adding 'iotbx/pdb/xray_structure.py' adding 'iotbx/pdb/remediation/__init__.py' adding 'iotbx/pdb/remediation/remediator.py' adding 'iotbx/pdb/remediation/tst_remediator.py' adding 'iotbx/programs/__init__.py' adding 'iotbx/programs/box_around_molecule.py' adding 'iotbx/programs/split_data_cif.py' adding 'iotbx/programs/unique_with_biomt.py' adding 'iotbx/regression/__init__.py' adding 'iotbx/regression/tst_add_conformations.py' adding 'iotbx/regression/tst_all_chain_ids.py' adding 'iotbx/regression/tst_atom_selections_10k.py' adding 'iotbx/regression/tst_bioinformatics.py' adding 'iotbx/regression/tst_box_around_molecule.py' adding 'iotbx/regression/tst_cif_1.py' adding 'iotbx/regression/tst_cif_as_pdb_1atom.py' adding 'iotbx/regression/tst_cli_parser.py' adding 'iotbx/regression/tst_crystal_symmetry_from_any.py' adding 'iotbx/regression/tst_csv_utils.py' adding 'iotbx/regression/tst_data_manager.py' adding 'iotbx/regression/tst_data_plots.py' adding 'iotbx/regression/tst_examples.py' adding 'iotbx/regression/tst_export_scalepack_unmerged.py' adding 'iotbx/regression/tst_extract_xtal_data.py' adding 'iotbx/regression/tst_fetch.py' adding 'iotbx/regression/tst_file_io.py' adding 'iotbx/regression/tst_file_reader.py' adding 'iotbx/regression/tst_generate_n_char_string.py' adding 'iotbx/regression/tst_group_rounding.py' adding 'iotbx/regression/tst_hierarchy_altlocs.py' adding 'iotbx/regression/tst_hierarchy_copy_select.py' adding 'iotbx/regression/tst_hierarchy_forward_compatible_pdb.py' adding 'iotbx/regression/tst_hierarchy_id_str.py' adding 'iotbx/regression/tst_hierarchy_long_chain_ids_1.py' adding 'iotbx/regression/tst_hierarchy_long_resname_1.py' adding 'iotbx/regression/tst_hierarchy_long_resname_2.py' adding 'iotbx/regression/tst_hierarchy_long_resname_3.py' adding 'iotbx/regression/tst_hierarchy_long_resname_4.py' adding 'iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py' adding 'iotbx/regression/tst_hierarchy_occupancies_rounding.py' adding 'iotbx/regression/tst_hierarchy_pdb_v3.py' adding 'iotbx/regression/tst_lattice_symmetry.py' adding 'iotbx/regression/tst_map_manager.py' adding 'iotbx/regression/tst_map_manager_2.py' adding 'iotbx/regression/tst_map_manager_wrapping.py' adding 'iotbx/regression/tst_map_model_manager.py' adding 'iotbx/regression/tst_map_model_manager_2.py' adding 'iotbx/regression/tst_map_model_manager_3.py' adding 'iotbx/regression/tst_map_model_manager_4.py' adding 'iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py' adding 'iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py' adding 'iotbx/regression/tst_map_model_manager_call_consistency.py' adding 'iotbx/regression/tst_map_model_manager_cif.py' adding 'iotbx/regression/tst_map_model_manager_external_sharpening_7.py' adding 'iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py' adding 'iotbx/regression/tst_map_model_manager_local_resolution_10.py' adding 'iotbx/regression/tst_map_model_manager_model_sharpening_5.py' adding 'iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py' adding 'iotbx/regression/tst_map_model_manager_tls_from_map_8.py' adding 'iotbx/regression/tst_map_tools.py' adding 'iotbx/regression/tst_merging_statistics.py' adding 'iotbx/regression/tst_miller_sort_asu.py' adding 'iotbx/regression/tst_mmcif_input.py' adding 'iotbx/regression/tst_mmcif_multimodel.py' adding 'iotbx/regression/tst_mmcif_segids.py' adding 'iotbx/regression/tst_mmcif_to_from_hierarchy.py' adding 'iotbx/regression/tst_mrc_io.py' adding 'iotbx/regression/tst_mtz_as_cif.py' adding 'iotbx/regression/tst_patterson.py' adding 'iotbx/regression/tst_pdb_as_cif.py' adding 'iotbx/regression/tst_pdb_as_fasta.py' adding 'iotbx/regression/tst_pdb_cif_cells.py' adding 'iotbx/regression/tst_pdb_cif_inputs.py' adding 'iotbx/regression/tst_pdb_link_records.py' adding 'iotbx/regression/tst_pdbx_mmcif_tutorial.py' adding 'iotbx/regression/tst_phases.py' adding 'iotbx/regression/tst_phil.py' adding 'iotbx/regression/tst_poscar.py' adding 'iotbx/regression/tst_reflection_file_editor.py' adding 'iotbx/regression/tst_reflection_file_reader.py' adding 'iotbx/regression/tst_reflection_file_utils.py' adding 'iotbx/regression/tst_reflection_statistics.py' adding 'iotbx/regression/tst_reindex.py' adding 'iotbx/regression/tst_restraints_merge.py' adding 'iotbx/regression/tst_selected_hierarchy_flip.py' adding 'iotbx/regression/tst_show_systematic_absences.py' adding 'iotbx/regression/tst_simple_map_coefficients.py' adding 'iotbx/regression/tst_simple_parser.py' adding 'iotbx/regression/tst_sort_atoms.py' adding 'iotbx/regression/tst_split_data_cif.py' adding 'iotbx/regression/tst_split_models.py' adding 'iotbx/regression/tst_symmetry.py' adding 'iotbx/regression/tst_text_detection.py' adding 'iotbx/regression/tst_wildcard.py' adding 'iotbx/regression/tst_xray_scale.py' adding 'iotbx/regression/utils.py' adding 'iotbx/regression/ncs/__init__.py' adding 'iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py' adding 'iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py' adding 'iotbx/regression/ncs/tst_ncs.py' adding 'iotbx/regression/ncs/tst_ncs_groups_preprocessing.py' adding 'iotbx/regression/ncs/tst_ncs_input.py' adding 'iotbx/regression/ncs/tst_ncs_input_preserves_iseqs.py' adding 'iotbx/regression/ncs/tst_ncs_reordered_chains.py' adding 'iotbx/regression/ncs/tst_ncs_search_broken_chain.py' adding 'iotbx/regression/ncs/tst_ncs_search_ligs.py' adding 'iotbx/regression/ncs/tst_ncs_search_shortcut_1.py' adding 'iotbx/regression/ncs/tst_ncs_user_selections.py' adding 'iotbx/regression/ncs/tst_ncs_without_validation.py' adding 'iotbx/scalepack/__init__.py' adding 'iotbx/scalepack/crystal_symmetry_from_hkl.py' adding 'iotbx/scalepack/merge.py' adding 'iotbx/scalepack/no_merge_original_index.py' adding 'iotbx/scalepack/space_group_dictionary.py' adding 'iotbx/scalepack/tst_merge.py' adding 'iotbx/scalepack/tst_no_merge_original_index.py' adding 'iotbx/shelx/__init__.py' adding 'iotbx/shelx/crystal_symmetry_from_ins.py' adding 'iotbx/shelx/errors.py' adding 'iotbx/shelx/fcf.py' adding 'iotbx/shelx/fvar_encoding.py' adding 'iotbx/shelx/hklf.py' adding 'iotbx/shelx/lexer.py' adding 'iotbx/shelx/parsers.py' adding 'iotbx/shelx/tokens.py' adding 'iotbx/shelx/tst_fvar_encoding.py' adding 'iotbx/shelx/tst_hklf.py' adding 'iotbx/shelx/tst_lex_parse_build.py' adding 'iotbx/shelx/tst_writer.py' adding 'iotbx/shelx/write_ins.py' adding 'iotbx/shelx/writer.py' adding 'iotbx/solve/__init__.py' adding 'iotbx/solve/crystal_symmetry_from_inp.py' adding 'iotbx/solve/fpfm_reader.py' adding 'iotbx/xds/__init__.py' adding 'iotbx/xds/blank_cbf.py' adding 'iotbx/xds/correction.py' adding 'iotbx/xds/crystal_symmetry_from_hkl.py' adding 'iotbx/xds/gain_cbf.py' adding 'iotbx/xds/geometry.py' adding 'iotbx/xds/integrate_hkl.py' adding 'iotbx/xds/read_ascii.py' adding 'iotbx/xds/spot_xds.py' adding 'iotbx/xds/xds_cbf.py' adding 'iotbx/xds/xds_inp.py' adding 'iotbx/xds/xparm.py' adding 'iotbx/xplor/__init__.py' adding 'iotbx/xplor/crystal_symmetry_from_map.py' adding 'iotbx/xplor/ext.py' adding 'iotbx/xplor/map.py' adding 'iotbx/xplor/tst_xplormap.py' adding 'libtbx/__init__.py' adding 'libtbx/assert_utils.py' adding 'libtbx/binary_search.py' adding 'libtbx/callbacks.py' adding 'libtbx/citations.py' adding 'libtbx/clear_paths.py' adding 'libtbx/cli.py' adding 'libtbx/cluster.py' adding 'libtbx/clusterTests.py' adding 'libtbx/code_analysis.py' adding 'libtbx/complex_math.py' adding 'libtbx/configure.py' adding 'libtbx/console_utils.py' adding 'libtbx/containers.py' adding 'libtbx/cpp_function_name.py' adding 'libtbx/crossmingw.py' adding 'libtbx/dlite.py' adding 'libtbx/easy_mp.py' adding 'libtbx/easy_pickle.py' adding 'libtbx/easy_profile.py' adding 'libtbx/easy_run.py' adding 'libtbx/env_config.py' adding 'libtbx/file_clutter.py' adding 'libtbx/find_reference_cycles.py' adding 'libtbx/forward_compatibility.py' adding 'libtbx/introspection.py' adding 'libtbx/libtbx_refresh.py' adding 'libtbx/load_env.py' adding 'libtbx/log.py' adding 'libtbx/math_utils.py' adding 'libtbx/metric_prefixes.py' adding 'libtbx/mpi4py.py' adding 'libtbx/object_oriented_patterns.py' adding 'libtbx/objgraph.py' adding 'libtbx/option_parser.py' adding 'libtbx/path.py' adding 'libtbx/pkg_utils.py' adding 'libtbx/program_template.py' adding 'libtbx/progress.py' adding 'libtbx/pyframe.py' adding 'libtbx/pyplot.py' adding 'libtbx/python_code_parsing.py' adding 'libtbx/resource_monitor.py' adding 'libtbx/run_tests.py' adding 'libtbx/runtime_utils.py' adding 'libtbx/simplexml.py' adding 'libtbx/smart_open.py' adding 'libtbx/start_print_trace.py' adding 'libtbx/str_utils.py' adding 'libtbx/subprocess_with_fixes.py' adding 'libtbx/table_utils.py' adding 'libtbx/thread_utils.py' adding 'libtbx/topological_sort.py' adding 'libtbx/try_hello_world_c.py' adding 'libtbx/tst_add_docstrings_with_ai.py' adding 'libtbx/tst_binary_search.py' adding 'libtbx/tst_citation_encoding.py' adding 'libtbx/tst_citations.py' adding 'libtbx/tst_conda_dispatcher.py' adding 'libtbx/tst_containers.py' adding 'libtbx/tst_dlite.py' adding 'libtbx/tst_easy_mp.py' adding 'libtbx/tst_easy_mp_multicore.py' adding 'libtbx/tst_easy_mp_state.py' adding 'libtbx/tst_easy_pickle.py' adding 'libtbx/tst_find_unused_imports.py' adding 'libtbx/tst_fully_buffered_timeout.py' adding 'libtbx/tst_guided_coding.py' adding 'libtbx/tst_mahalanobis.py' adding 'libtbx/tst_math_utils.py' adding 'libtbx/tst_object_oriented_patterns.py' adding 'libtbx/tst_path.py' adding 'libtbx/tst_program_template.py' adding 'libtbx/tst_python_code_parsing.py' adding 'libtbx/tst_representation.py' adding 'libtbx/tst_run_tests_parallel_retry.py' adding 'libtbx/tst_run_tests_parallel_unique_dirs.py' adding 'libtbx/tst_runtime_utils.py' adding 'libtbx/tst_scheduling.py' adding 'libtbx/tst_str_utils.py' adding 'libtbx/tst_t96_roster.py' adding 'libtbx/tst_thread_utils.py' adding 'libtbx/tst_topological_sort.py' adding 'libtbx/tst_utils.py' adding 'libtbx/tst_version.py' adding 'libtbx/tst_word_index_generator.py' adding 'libtbx/tst_xmlrpc_utils.py' adding 'libtbx/utils.py' adding 'libtbx/version.py' adding 'libtbx/wingide.py' adding 'libtbx/word_index_generator.py' adding 'libtbx/xmlrpc_server_example.py' adding 'libtbx/xmlrpc_utils.py' adding 'libtbx/auto_build/__init__.py' adding 'libtbx/auto_build/bootstrap.py' adding 'libtbx/auto_build/create_cctbx_bundle_for_installer.py' adding 'libtbx/auto_build/create_installer.py' adding 'libtbx/auto_build/create_mac_app.py' adding 'libtbx/auto_build/create_mac_pkg.py' adding 'libtbx/auto_build/create_windows_exe.py' adding 'libtbx/auto_build/create_windows_installer.py' adding 'libtbx/auto_build/install_base_packages.py' adding 'libtbx/auto_build/install_conda.py' adding 'libtbx/auto_build/install_distribution.py' adding 'libtbx/auto_build/installer_utils.py' adding 'libtbx/auto_build/make_bundle.py' adding 'libtbx/auto_build/package_defs.py' adding 'libtbx/auto_build/plus_installer.py' adding 'libtbx/auto_build/regenerate_module_files.py' adding 'libtbx/auto_build/rpath.py' adding 'libtbx/auto_build/setup_installer.py' adding 'libtbx/auto_build/write_gui_dispatcher_include.py' adding 'libtbx/bundle/__init__.py' adding 'libtbx/bundle/copy_all.py' adding 'libtbx/bundle/copy_build_libtbx.py' adding 'libtbx/bundle/copy_runtime_sources.py' adding 'libtbx/bundle/install_bat.py' adding 'libtbx/bundle/install_csh.py' adding 'libtbx/bundle/utils.py' adding 'libtbx/command_line/__init__.py' adding 'libtbx/command_line/add_docstrings_with_ai.py' adding 'libtbx/command_line/analyse_code_comments.py' adding 'libtbx/command_line/any2unix.py' adding 'libtbx/command_line/assert_line_count.py' adding 'libtbx/command_line/assert_not_show_diff.py' adding 'libtbx/command_line/assert_stdin.py' adding 'libtbx/command_line/assert_stdin_contains_strings.py' adding 'libtbx/command_line/assert_stdin_ends_with.py' adding 'libtbx/command_line/bootstrap.py' adding 'libtbx/command_line/bundle_as_exe.py' adding 'libtbx/command_line/cctbx_chunk.py' adding 'libtbx/command_line/check_libcpp.py' adding 'libtbx/command_line/clean_clutter.py' adding 'libtbx/command_line/clear_paths.py' adding 'libtbx/command_line/create_cctbx_bundle_for_installer.py' adding 'libtbx/command_line/create_install_script_bat.py' adding 'libtbx/command_line/create_installer.py' adding 'libtbx/command_line/create_mac_app.py' adding 'libtbx/command_line/create_selfx.py' adding 'libtbx/command_line/create_unzipsfx.py' adding 'libtbx/command_line/create_windows_exe.py' adding 'libtbx/command_line/dtrace.py' adding 'libtbx/command_line/easy_qsub.py' adding 'libtbx/command_line/env_run.py' adding 'libtbx/command_line/epydoc_run.py' adding 'libtbx/command_line/extract_code_from_txt.py' adding 'libtbx/command_line/find_clutter.py' adding 'libtbx/command_line/find_files.py' adding 'libtbx/command_line/find_in_repositories.py' adding 'libtbx/command_line/find_old_style_classes.py' adding 'libtbx/command_line/find_pdb_mmcif_problems.py' adding 'libtbx/command_line/find_reserved_names.py' adding 'libtbx/command_line/find_under_build.py' adding 'libtbx/command_line/find_untested.py' adding 'libtbx/command_line/find_unused_imports.py' adding 'libtbx/command_line/find_unused_imports_crude.py' adding 'libtbx/command_line/git_avoid_merges.py' adding 'libtbx/command_line/help.py' adding 'libtbx/command_line/import_all_ext.py' adding 'libtbx/command_line/import_all_python.py' adding 'libtbx/command_line/install.py' adding 'libtbx/command_line/install_conda.py' adding 'libtbx/command_line/ipython_shell_start.py' adding 'libtbx/command_line/line_count.py' adding 'libtbx/command_line/list_files.py' adding 'libtbx/command_line/list_modules.py' adding 'libtbx/command_line/list_source_files_sorted_by_size.py' adding 'libtbx/command_line/make_dist.py' adding 'libtbx/command_line/make_sphinx_html.py' adding 'libtbx/command_line/nequal.py' adding 'libtbx/command_line/parallel_simple.py' adding 'libtbx/command_line/path_utility.py' adding 'libtbx/command_line/phil.py' adding 'libtbx/command_line/prime_factors_of.py' adding 'libtbx/command_line/printenv.py' adding 'libtbx/command_line/py_compile_all.py' adding 'libtbx/command_line/raise_exception_for_testing.py' adding 'libtbx/command_line/reindent.py' adding 'libtbx/command_line/remote_processing.py' adding 'libtbx/command_line/remove_tree.py' adding 'libtbx/command_line/remove_unused_imports.py' adding 'libtbx/command_line/resource_monitor_plot.py' adding 'libtbx/command_line/run_pickled_function.py' adding 'libtbx/command_line/run_tests_parallel.py' adding 'libtbx/command_line/scons.py' adding 'libtbx/command_line/seconds_since_the_epoch.py' adding 'libtbx/command_line/sge_available_slots.py' adding 'libtbx/command_line/sge_qstat_counts.py' adding 'libtbx/command_line/show_all_on_path.py' adding 'libtbx/command_line/show_bin_path.py' adding 'libtbx/command_line/show_build_options.py' adding 'libtbx/command_line/show_build_path.py' adding 'libtbx/command_line/show_but_no_repr.py' adding 'libtbx/command_line/show_commands.py' adding 'libtbx/command_line/show_date_and_time.py' adding 'libtbx/command_line/show_dist_paths.py' adding 'libtbx/command_line/show_env.py' adding 'libtbx/command_line/show_environ_usage.py' adding 'libtbx/command_line/show_full_command_path.py' adding 'libtbx/command_line/show_host_and_user.py' adding 'libtbx/command_line/show_include_paths.py' adding 'libtbx/command_line/show_lib_path.py' adding 'libtbx/command_line/show_module_dependencies.py' adding 'libtbx/command_line/show_number_of_processors.py' adding 'libtbx/command_line/show_numeric_version.py' adding 'libtbx/command_line/show_numpy_version.py' adding 'libtbx/command_line/show_python_dependencies.py' adding 'libtbx/command_line/show_python_sys_executable.py' adding 'libtbx/command_line/show_pythonpath.py' adding 'libtbx/command_line/show_repository_paths.py' adding 'libtbx/command_line/show_tests.py' adding 'libtbx/command_line/show_variable_names.py' adding 'libtbx/command_line/sphinx_build.py' adding 'libtbx/command_line/start_binary_bundle.py' adding 'libtbx/command_line/start_process.py' adding 'libtbx/command_line/wait_for_file.py' adding 'libtbx/development/__init__.py' adding 'libtbx/development/except_Exception.py' adding 'libtbx/development/timers.py' adding 'libtbx/development/xcode_build_phase.py' adding 'libtbx/jobs/__init__.py' adding 'libtbx/jobs/fake_slurm.py' adding 'libtbx/jobs/manager.py' adding 'libtbx/jobs/tst_batch.py' adding 'libtbx/jobs/tst_local.py' adding 'libtbx/jobs/tst_manager.py' adding 'libtbx/jobs/tst_slurm.py' adding 'libtbx/jobs/backends/__init__.py' adding 'libtbx/jobs/backends/base.py' adding 'libtbx/jobs/backends/batch.py' adding 'libtbx/jobs/backends/local.py' adding 'libtbx/jobs/backends/slurm.py' adding 'libtbx/langchain/__init__.py' adding 'libtbx/langchain/phenix_knowledge.py' adding 'libtbx/langchain/run_build_db.py' adding 'libtbx/langchain/run_inspect_db.py' adding 'libtbx/langchain/run_query_docs.py' adding 'libtbx/langchain/agent/__init__.py' adding 'libtbx/langchain/agent/advice_preprocessor.py' adding 'libtbx/langchain/agent/api_client.py' adding 'libtbx/langchain/agent/best_files_tracker.py' adding 'libtbx/langchain/agent/command_builder.py' adding 'libtbx/langchain/agent/command_postprocessor.py' adding 'libtbx/langchain/agent/config_loader.py' adding 'libtbx/langchain/agent/contract.py' adding 'libtbx/langchain/agent/directive_extractor.py' adding 'libtbx/langchain/agent/directive_validator.py' adding 'libtbx/langchain/agent/display_data_model.py' adding 'libtbx/langchain/agent/docs_tools.py' adding 'libtbx/langchain/agent/dry_run_manager.py' adding 'libtbx/langchain/agent/error_analyzer.py' adding 'libtbx/langchain/agent/error_classifier.py' adding 'libtbx/langchain/agent/event_formatter.py' adding 'libtbx/langchain/agent/event_log.py' adding 'libtbx/langchain/agent/failure_diagnoser.py' adding 'libtbx/langchain/agent/file_metadata.py' adding 'libtbx/langchain/agent/file_utils.py' adding 'libtbx/langchain/agent/format_validation.py' adding 'libtbx/langchain/agent/gate_evaluator.py' adding 'libtbx/langchain/agent/generate_logic_doc.py' adding 'libtbx/langchain/agent/generate_safety_docs.py' adding 'libtbx/langchain/agent/graph.py' adding 'libtbx/langchain/agent/graph_nodes.py' adding 'libtbx/langchain/agent/graph_state.py' adding 'libtbx/langchain/agent/hypothesis_evaluator.py' adding 'libtbx/langchain/agent/intent_classifier.py' adding 'libtbx/langchain/agent/kb_tags.py' adding 'libtbx/langchain/agent/log_section_extractor.py' adding 'libtbx/langchain/agent/memory.py' adding 'libtbx/langchain/agent/metric_evaluator.py' adding 'libtbx/langchain/agent/metrics_analyzer.py' adding 'libtbx/langchain/agent/mtz_inspector.py' adding 'libtbx/langchain/agent/nl_to_phil.py' adding 'libtbx/langchain/agent/pattern_manager.py' adding 'libtbx/langchain/agent/perceive_checks.py' adding 'libtbx/langchain/agent/phenix_utils.py' adding 'libtbx/langchain/agent/phil_validator.py' adding 'libtbx/langchain/agent/placement_checker.py' adding 'libtbx/langchain/agent/plan_generator.py' adding 'libtbx/langchain/agent/planner.py' adding 'libtbx/langchain/agent/program_registry.py' adding 'libtbx/langchain/agent/program_validator.py' adding 'libtbx/langchain/agent/r_factors.py' adding 'libtbx/langchain/agent/rate_limit_handler.py' adding 'libtbx/langchain/agent/raw_advice_scanner.py' adding 'libtbx/langchain/agent/rules_selector.py' adding 'libtbx/langchain/agent/sanity_checker.py' adding 'libtbx/langchain/agent/session.py' adding 'libtbx/langchain/agent/session_tools.py' adding 'libtbx/langchain/agent/strategy_memory.py' adding 'libtbx/langchain/agent/structure_model.py' adding 'libtbx/langchain/agent/template_builder.py' adding 'libtbx/langchain/agent/thinking_agent.py' adding 'libtbx/langchain/agent/transport.py' adding 'libtbx/langchain/agent/tst_agent_enhancements.py' adding 'libtbx/langchain/agent/utils.py' adding 'libtbx/langchain/agent/validation_history.py' adding 'libtbx/langchain/agent/validation_inspector.py' adding 'libtbx/langchain/agent/workflow_engine.py' adding 'libtbx/langchain/agent/workflow_state.py' adding 'libtbx/langchain/agent/yaml_tools.py' adding 'libtbx/langchain/analysis/__init__.py' adding 'libtbx/langchain/analysis/agent_session_analyzer.py' adding 'libtbx/langchain/analysis/analysis_request.py' adding 'libtbx/langchain/analysis/analyzer.py' adding 'libtbx/langchain/analysis/log_info.py' adding 'libtbx/langchain/analysis/orientation_strip.py' adding 'libtbx/langchain/analysis/program_identity.py' adding 'libtbx/langchain/analysis/report_verifier.py' adding 'libtbx/langchain/analysis/state_extractor.py' adding 'libtbx/langchain/analysis/summarizer.py' adding 'libtbx/langchain/commands/__init__.py' adding 'libtbx/langchain/commands/base.py' adding 'libtbx/langchain/core/__init__.py' adding 'libtbx/langchain/core/_build_info.py' adding 'libtbx/langchain/core/_version.py' adding 'libtbx/langchain/core/llm.py' adding 'libtbx/langchain/core/types.py' adding 'libtbx/langchain/examples/__init__.py' adding 'libtbx/langchain/knowledge/__init__.py' adding 'libtbx/langchain/knowledge/api_schema.py' adding 'libtbx/langchain/knowledge/explanation_prompts.py' adding 'libtbx/langchain/knowledge/html_report_template.py' adding 'libtbx/langchain/knowledge/kb_loader.py' adding 'libtbx/langchain/knowledge/metric_patterns.py' adding 'libtbx/langchain/knowledge/phenix_programs.py' adding 'libtbx/langchain/knowledge/plan_schema.py' adding 'libtbx/langchain/knowledge/plan_template_loader.py' adding 'libtbx/langchain/knowledge/program_registration.py' adding 'libtbx/langchain/knowledge/prompts.py' adding 'libtbx/langchain/knowledge/prompts_hybrid.py' adding 'libtbx/langchain/knowledge/summary_display.py' adding 'libtbx/langchain/knowledge/thinking_prompts.py' adding 'libtbx/langchain/knowledge/yaml_loader.py' adding 'libtbx/langchain/log_extraction/__init__.py' adding 'libtbx/langchain/log_extraction/corpus_paths.py' adding 'libtbx/langchain/log_extraction/log_structure_extractor.py' adding 'libtbx/langchain/log_extraction/run_controls.py' adding 'libtbx/langchain/log_extraction/run_measurements.py' adding 'libtbx/langchain/log_extraction/validate.py' adding 'libtbx/langchain/rag/__init__.py' adding 'libtbx/langchain/rag/_chroma_resilience.py' adding 'libtbx/langchain/rag/document_loader.py' adding 'libtbx/langchain/rag/retriever.py' adding 'libtbx/langchain/rag/vector_store.py' adding 'libtbx/langchain/strategies/__init__.py' adding 'libtbx/langchain/strategies/base.py' adding 'libtbx/langchain/tests/__init__.py' adding 'libtbx/langchain/tests/analyze_tutorial_runs.py' adding 'libtbx/langchain/tests/audit_phase_rename.py' adding 'libtbx/langchain/tests/canary_utils.py' adding 'libtbx/langchain/tests/run_all_tests.py' adding 'libtbx/langchain/tests/test_api_keys.py' adding 'libtbx/langchain/tests/tst_abort_message_all_stops.py' adding 'libtbx/langchain/tests/tst_action_item_1.py' adding 'libtbx/langchain/tests/tst_advice_preprocessing.py' adding 'libtbx/langchain/tests/tst_after_program_fill_from_raw.py' adding 'libtbx/langchain/tests/tst_after_program_prompt.py' adding 'libtbx/langchain/tests/tst_agent_build_info.py' adding 'libtbx/langchain/tests/tst_analysis_request.py' adding 'libtbx/langchain/tests/tst_api_schema.py' adding 'libtbx/langchain/tests/tst_audit_fixes.py' adding 'libtbx/langchain/tests/tst_autobuild_hl_recovery.py' adding 'libtbx/langchain/tests/tst_autobuild_sequence_waiver.py' adding 'libtbx/langchain/tests/tst_autosol_bugs.py' adding 'libtbx/langchain/tests/tst_backward_compat.py' adding 'libtbx/langchain/tests/tst_best_files_tracker.py' adding 'libtbx/langchain/tests/tst_build_experiment_type_and_rfree.py' adding 'libtbx/langchain/tests/tst_canary.py' adding 'libtbx/langchain/tests/tst_cc_key_extraction.py' adding 'libtbx/langchain/tests/tst_classify_mtz_type_001.py' adding 'libtbx/langchain/tests/tst_command_builder.py' adding 'libtbx/langchain/tests/tst_contract_compliance.py' adding 'libtbx/langchain/tests/tst_copies_tracking.py' adding 'libtbx/langchain/tests/tst_cryoem_metric_evaluator_validation.py' adding 'libtbx/langchain/tests/tst_cryoem_stop_validation.py' adding 'libtbx/langchain/tests/tst_data_input_filter.py' adding 'libtbx/langchain/tests/tst_decision_flow.py' adding 'libtbx/langchain/tests/tst_default_models.py' adding 'libtbx/langchain/tests/tst_density_modify_experiment_type.py' adding 'libtbx/langchain/tests/tst_dependencies.py' adding 'libtbx/langchain/tests/tst_diagnosed_failure_stop.py' adding 'libtbx/langchain/tests/tst_diagnostic_messages.py' adding 'libtbx/langchain/tests/tst_directive_extractor.py' adding 'libtbx/langchain/tests/tst_directive_extractor_behavior_regression.py' adding 'libtbx/langchain/tests/tst_directive_extractor_grounding.py' adding 'libtbx/langchain/tests/tst_directive_extractor_sentinel_space_group.py' adding 'libtbx/langchain/tests/tst_directive_layer_diagnostics.py' adding 'libtbx/langchain/tests/tst_directive_validation.py' adding 'libtbx/langchain/tests/tst_directive_validator.py' adding 'libtbx/langchain/tests/tst_directive_validator_typo_hints.py' adding 'libtbx/langchain/tests/tst_directives_integration.py' adding 'libtbx/langchain/tests/tst_display_data_model.py' adding 'libtbx/langchain/tests/tst_dock_and_stop.py' adding 'libtbx/langchain/tests/tst_docs_tools.py' adding 'libtbx/langchain/tests/tst_dry_run.py' adding 'libtbx/langchain/tests/tst_error_analyzer.py' adding 'libtbx/langchain/tests/tst_error_classifier.py' adding 'libtbx/langchain/tests/tst_event_formatter_file_categories.py' adding 'libtbx/langchain/tests/tst_event_system.py' adding 'libtbx/langchain/tests/tst_explanation_prompts.py' adding 'libtbx/langchain/tests/tst_extended_stop_phrasings.py' adding 'libtbx/langchain/tests/tst_extract_raw_advice.py' adding 'libtbx/langchain/tests/tst_extraction_failure_visibility.py' adding 'libtbx/langchain/tests/tst_fabricated_stop_condition.py' adding 'libtbx/langchain/tests/tst_file_categorization.py' adding 'libtbx/langchain/tests/tst_file_categorizer.py' adding 'libtbx/langchain/tests/tst_file_encoding.py' adding 'libtbx/langchain/tests/tst_file_utils.py' adding 'libtbx/langchain/tests/tst_fix_verification.py' adding 'libtbx/langchain/tests/tst_force_no_ai_server.py' adding 'libtbx/langchain/tests/tst_gate_evaluator.py' adding 'libtbx/langchain/tests/tst_general_resolver.py' adding 'libtbx/langchain/tests/tst_grounding_stop_after_requested.py' adding 'libtbx/langchain/tests/tst_h17_strip_executor.py' adding 'libtbx/langchain/tests/tst_h18_1_phil_roundtrip.py' adding 'libtbx/langchain/tests/tst_halfmap_sigmaa_inventory.py' adding 'libtbx/langchain/tests/tst_hardcoded_cleanup.py' adding 'libtbx/langchain/tests/tst_history_analysis.py' adding 'libtbx/langchain/tests/tst_hypothesis_evaluator.py' adding 'libtbx/langchain/tests/tst_initialize_plan_smoke.py' adding 'libtbx/langchain/tests/tst_input_mtz_has_rfree_plumbing.py' adding 'libtbx/langchain/tests/tst_integration.py' adding 'libtbx/langchain/tests/tst_intent_classifier.py' adding 'libtbx/langchain/tests/tst_langchain_tools.py' adding 'libtbx/langchain/tests/tst_ligand_workflow_restart.py' adding 'libtbx/langchain/tests/tst_ligandfit_patterns.py' adding 'libtbx/langchain/tests/tst_llm_unavailable_notice.py' adding 'libtbx/langchain/tests/tst_log_extractor.py' adding 'libtbx/langchain/tests/tst_log_structure_extractor.py' adding 'libtbx/langchain/tests/tst_metric_patterns.py' adding 'libtbx/langchain/tests/tst_metrics_analyzer.py' adding 'libtbx/langchain/tests/tst_mode_isolation.py' adding 'libtbx/langchain/tests/tst_mtz_crosscheck.py' adding 'libtbx/langchain/tests/tst_mtz_phases_session_blocking.py' adding 'libtbx/langchain/tests/tst_n_bugs.py' adding 'libtbx/langchain/tests/tst_new_programs.py' adding 'libtbx/langchain/tests/tst_obs_labels_auto_fill.py' adding 'libtbx/langchain/tests/tst_old_client_compat.py' adding 'libtbx/langchain/tests/tst_optional_dep_resilience.py' adding 'libtbx/langchain/tests/tst_pattern_manager.py' adding 'libtbx/langchain/tests/tst_perceive_stop_checks.py' adding 'libtbx/langchain/tests/tst_phase0_static_audit.py' adding 'libtbx/langchain/tests/tst_phase1_contract_gaps.py' adding 'libtbx/langchain/tests/tst_phase2_path_consistency.py' adding 'libtbx/langchain/tests/tst_phase2b_activation.py' adding 'libtbx/langchain/tests/tst_phase3_bug5.py' adding 'libtbx/langchain/tests/tst_phase3_serialization_symmetry.py' adding 'libtbx/langchain/tests/tst_phase3d_motivating_tutorial.py' adding 'libtbx/langchain/tests/tst_phase4_history_flags.py' adding 'libtbx/langchain/tests/tst_phase5_error_classification.py' adding 'libtbx/langchain/tests/tst_phase6_category_consumer.py' adding 'libtbx/langchain/tests/tst_phase7_routing_simulation.py' adding 'libtbx/langchain/tests/tst_phase8_command_building.py' adding 'libtbx/langchain/tests/tst_phase9_llm_perturbation.py' adding 'libtbx/langchain/tests/tst_phaser_multimodel.py' adding 'libtbx/langchain/tests/tst_phil_namespace_cleaner.py' adding 'libtbx/langchain/tests/tst_phil_validation.py' adding 'libtbx/langchain/tests/tst_placement_skip_rebuild.py' adding 'libtbx/langchain/tests/tst_plan_autostop_validation_suppression.py' adding 'libtbx/langchain/tests/tst_plan_catchup_failure_semantics.py' adding 'libtbx/langchain/tests/tst_plan_generator.py' adding 'libtbx/langchain/tests/tst_plan_lead_program_offer.py' adding 'libtbx/langchain/tests/tst_plan_schema.py' adding 'libtbx/langchain/tests/tst_planning_framework.py' adding 'libtbx/langchain/tests/tst_portkey_embedding_model.py' adding 'libtbx/langchain/tests/tst_predict_and_build_no_ncs.py' adding 'libtbx/langchain/tests/tst_preprocessor_file_override.py' adding 'libtbx/langchain/tests/tst_program_identity.py' adding 'libtbx/langchain/tests/tst_program_registration.py' adding 'libtbx/langchain/tests/tst_program_requirements.py' adding 'libtbx/langchain/tests/tst_protocol_version.py' adding 'libtbx/langchain/tests/tst_provider_error_classification.py' adding 'libtbx/langchain/tests/tst_provider_lock.py' adding 'libtbx/langchain/tests/tst_raw_advice_scanner.py' adding 'libtbx/langchain/tests/tst_reactive_deviation_hold.py' adding 'libtbx/langchain/tests/tst_reasoning_command_divergence.py' adding 'libtbx/langchain/tests/tst_rebuild_template_selection.py' adding 'libtbx/langchain/tests/tst_refine_final_rfree.py' adding 'libtbx/langchain/tests/tst_report_verifier.py' adding 'libtbx/langchain/tests/tst_resolve_cryo_em_ncs_inject.py' adding 'libtbx/langchain/tests/tst_resume_reopen_stages.py' adding 'libtbx/langchain/tests/tst_rfree_flags_missing.py' adding 'libtbx/langchain/tests/tst_rfree_generate_guard.py' adding 'libtbx/langchain/tests/tst_rfree_lock_reconciliation.py' adding 'libtbx/langchain/tests/tst_rfree_resolution_stop.py' adding 'libtbx/langchain/tests/tst_safe_float_consolidation.py' adding 'libtbx/langchain/tests/tst_sanity_checker.py' adding 'libtbx/langchain/tests/tst_scenario_tracer.py' adding 'libtbx/langchain/tests/tst_sequence_only_routing.py' adding 'libtbx/langchain/tests/tst_session_directives.py' adding 'libtbx/langchain/tests/tst_session_summary.py' adding 'libtbx/langchain/tests/tst_session_tools.py' adding 'libtbx/langchain/tests/tst_settings_list_coercion.py' adding 'libtbx/langchain/tests/tst_shared_code_imports.py' adding 'libtbx/langchain/tests/tst_silent_stop_abort_messages.py' adding 'libtbx/langchain/tests/tst_simple_extractor_validation.py' adding 'libtbx/langchain/tests/tst_skip_promotion.py' adding 'libtbx/langchain/tests/tst_skip_to_program.py' adding 'libtbx/langchain/tests/tst_solve_action_keywords.py' adding 'libtbx/langchain/tests/tst_space_group_validation.py' adding 'libtbx/langchain/tests/tst_spurious_stop_after_requested.py' adding 'libtbx/langchain/tests/tst_standalone_consistency.py' adding 'libtbx/langchain/tests/tst_state_serialization.py' adding 'libtbx/langchain/tests/tst_step1f_single_emit.py' adding 'libtbx/langchain/tests/tst_stop_condition_false_positive.py' adding 'libtbx/langchain/tests/tst_stop_condition_fix.py' adding 'libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py' adding 'libtbx/langchain/tests/tst_stop_reason_codes.py' adding 'libtbx/langchain/tests/tst_stop_reason_prompt.py' adding 'libtbx/langchain/tests/tst_strategy_memory.py' adding 'libtbx/langchain/tests/tst_structure_model.py' adding 'libtbx/langchain/tests/tst_summary_display.py' adding 'libtbx/langchain/tests/tst_summary_file.py' adding 'libtbx/langchain/tests/tst_supported_providers_single_source.py' adding 'libtbx/langchain/tests/tst_template.py' adding 'libtbx/langchain/tests/tst_thinking_agent.py' adding 'libtbx/langchain/tests/tst_thinking_defense.py' adding 'libtbx/langchain/tests/tst_transport.py' adding 'libtbx/langchain/tests/tst_transport_surfaces.py' adding 'libtbx/langchain/tests/tst_user_advice_filter.py' adding 'libtbx/langchain/tests/tst_utils.py' adding 'libtbx/langchain/tests/tst_v112_13_fixes.py' adding 'libtbx/langchain/tests/tst_v120_providers.py' adding 'libtbx/langchain/tests/tst_validate_file_overrides.py' adding 'libtbx/langchain/tests/tst_validate_step_after_program_guard.py' adding 'libtbx/langchain/tests/tst_validation_history.py' adding 'libtbx/langchain/tests/tst_workflow_complete_stop.py' adding 'libtbx/langchain/tests/tst_workflow_state.py' adding 'libtbx/langchain/tests/tst_yaml_config.py' adding 'libtbx/langchain/tests/tst_yaml_tools.py' adding 'libtbx/langchain/tests/integration/__init__.py' adding 'libtbx/langchain/tests/llm/__init__.py' adding 'libtbx/langchain/tests/llm/canary_check.py' adding 'libtbx/langchain/tests/llm/framework.py' adding 'libtbx/langchain/tests/llm/run_llm_tests.py' adding 'libtbx/langchain/tests/llm/tst_a1_extractor_smoke.py' adding 'libtbx/langchain/tests/llm/tst_b1_stop_after_requested.py' adding 'libtbx/langchain/tests/llm/tst_b2_gated_wipe_planning.py' adding 'libtbx/langchain/tests/llm/tst_c1_raw_authority.py' adding 'libtbx/langchain/tests/llm/tst_directive_extraction.py' adding 'libtbx/langchain/tests/llm/tst_framework_self.py' adding 'libtbx/langchain/tests/llm/tst_planning.py' adding 'libtbx/langchain/utils/__init__.py' adding 'libtbx/langchain/utils/query.py' adding 'libtbx/langchain/utils/run_utils.py' adding 'libtbx/langchain/utils/text_processing.py' adding 'libtbx/phil/__init__.py' adding 'libtbx/phil/command_line.py' adding 'libtbx/phil/experimental.py' adding 'libtbx/phil/gui_objects.py' adding 'libtbx/phil/interface.py' adding 'libtbx/phil/parser.py' adding 'libtbx/phil/tokenizer.py' adding 'libtbx/phil/tst.py' adding 'libtbx/phil/tst_experimental.py' adding 'libtbx/phil/tst_interface.py' adding 'libtbx/phil/tst_tokenizer.py' adding 'libtbx/program_utils/__init__.py' adding 'libtbx/program_utils/result.py' adding 'libtbx/program_utils/statistics_info.py' adding 'libtbx/queuing_system_utils/__init__.py' adding 'libtbx/queuing_system_utils/communication.py' adding 'libtbx/queuing_system_utils/generic.py' adding 'libtbx/queuing_system_utils/looping.py' adding 'libtbx/queuing_system_utils/lsf.py' adding 'libtbx/queuing_system_utils/pbs_utils.py' adding 'libtbx/queuing_system_utils/remote.py' adding 'libtbx/queuing_system_utils/scheduling.py' adding 'libtbx/queuing_system_utils/scheduling_helpers.py' adding 'libtbx/queuing_system_utils/sge_utils.py' adding 'libtbx/queuing_system_utils/tst.py' adding 'libtbx/queuing_system_utils/processing/__init__.py' adding 'libtbx/queuing_system_utils/processing/errors.py' adding 'libtbx/queuing_system_utils/processing/polling.py' adding 'libtbx/queuing_system_utils/processing/status.py' adding 'libtbx/queuing_system_utils/processing/submission.py' adding 'libtbx/queuing_system_utils/processing/transfer.py' adding 'libtbx/queuing_system_utils/processing/util.py' adding 'libtbx/scheduling/__init__.py' adding 'libtbx/scheduling/cluster_handler.py' adding 'libtbx/scheduling/file_queue.py' adding 'libtbx/scheduling/job_scheduler.py' adding 'libtbx/scheduling/mainthread.py' adding 'libtbx/scheduling/mp_handler.py' adding 'libtbx/scheduling/parallel_for.py' adding 'libtbx/scheduling/philgen.py' adding 'libtbx/scheduling/process_pool.py' adding 'libtbx/scheduling/result.py' adding 'libtbx/scheduling/shared_resource.py' adding 'libtbx/scheduling/socket_queue.py' adding 'libtbx/scheduling/stacktrace.py' adding 'libtbx/scheduling/thread_handler.py' adding 'libtbx/server/FileClient.py' adding 'libtbx/server/FileServer.py' adding 'libtbx/server/FileSocket.py' adding 'libtbx/server/SocketServer.py' adding 'libtbx/server/StartServer.py' adding 'libtbx/server/__init__.py' adding 'libtbx/sphinx/__init__.py' adding 'libtbx/sphinx/phil.py' adding 'libtbx/sphinx/pubmed.py' adding 'libtbx/sphinx/python_string.py' adding 'libtbx/test_utils/__init__.py' adding 'libtbx/test_utils/parallel.py' adding 'libtbx/test_utils/t96_roster.py' adding 'mmtbx/__init__.py' adding 'mmtbx/arrays.py' adding 'mmtbx/clashes.py' adding 'mmtbx/domains_from_pae.py' adding 'mmtbx/f_model_info.py' adding 'mmtbx/find_peaks.py' adding 'mmtbx/grow_density.py' adding 'mmtbx/invariant_domain.py' adding 'mmtbx/lattice.py' adding 'mmtbx/libtbx_refresh.py' adding 'mmtbx/map_tools.py' adding 'mmtbx/model_vs_data.py' adding 'mmtbx/msa.py' adding 'mmtbx/pdb_distances.py' adding 'mmtbx/pdb_symmetry.py' adding 'mmtbx/pdbtools.py' adding 'mmtbx/process_predicted_model.py' adding 'mmtbx/proq2.py' adding 'mmtbx/real_space_correlation.py' adding 'mmtbx/resolve_resources.py' adding 'mmtbx/restraints.py' adding 'mmtbx/run_tests.py' adding 'mmtbx/superpose.py' adding 'mmtbx/xmanip.py' adding 'mmtbx/xmanip_tasks.py' adding 'mmtbx/alignment/__init__.py' adding 'mmtbx/atomic_environment_vectors/__init__.py' adding 'mmtbx/atomic_environment_vectors/tst.py' adding 'mmtbx/building/__init__.py' adding 'mmtbx/building/cablam_idealization.py' adding 'mmtbx/building/extend_sidechains.py' adding 'mmtbx/building/loop_idealization.py' adding 'mmtbx/building/merge_models.py' adding 'mmtbx/building/minimize_chain.py' adding 'mmtbx/building/tst_extend_sidechains.py' adding 'mmtbx/building/tst_extend_sidechains_2.py' adding 'mmtbx/building/ligands/__init__.py' adding 'mmtbx/building/ligands/lifi.py' adding 'mmtbx/building/ligands/tst_00.py' adding 'mmtbx/building/loop_closure/__init__.py' adding 'mmtbx/building/loop_closure/berkeley_ramalyze.py' adding 'mmtbx/building/loop_closure/ccd.py' adding 'mmtbx/building/loop_closure/starting_conformations.py' adding 'mmtbx/building/loop_closure/utils.py' adding 'mmtbx/bulk_solvent/__init__.py' adding 'mmtbx/bulk_solvent/bulk_solvent_and_scaling.py' adding 'mmtbx/bulk_solvent/example.py' adding 'mmtbx/bulk_solvent/example2.py' adding 'mmtbx/bulk_solvent/f_model_all_scales.py' adding 'mmtbx/bulk_solvent/kbu_refinery.py' adding 'mmtbx/bulk_solvent/mosaic.py' adding 'mmtbx/bulk_solvent/multi_mask_bulk_solvent.py' adding 'mmtbx/bulk_solvent/scaler.py' adding 'mmtbx/bulk_solvent/tst_aniso_scaler.py' adding 'mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py' adding 'mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py' adding 'mmtbx/bulk_solvent/tst_flat_nonuniform.py' adding 'mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py' adding 'mmtbx/bulk_solvent/tst_mosaic.py' adding 'mmtbx/bulk_solvent/tst_scaler.py' adding 'mmtbx/chemical_components/__init__.py' adding 'mmtbx/chemical_components/cif_parser.py' adding 'mmtbx/chemical_components/tst.py' adding 'mmtbx/command_line/__init__.py' adding 'mmtbx/command_line/altloc_remediate.py' adding 'mmtbx/command_line/angle.py' adding 'mmtbx/command_line/apply_ncs_to_ligand.py' adding 'mmtbx/command_line/arginine_geometry.py' adding 'mmtbx/command_line/atom_valence_simple.py' adding 'mmtbx/command_line/barbed_wire_analysis.py' adding 'mmtbx/command_line/cablam.py' adding 'mmtbx/command_line/cablam_idealization.py' adding 'mmtbx/command_line/cbetadev.py' adding 'mmtbx/command_line/cc_star.py' adding 'mmtbx/command_line/chiral_validation.py' adding 'mmtbx/command_line/cif_as_mtz.py' adding 'mmtbx/command_line/clashscore.py' adding 'mmtbx/command_line/clashscore2.py' adding 'mmtbx/command_line/comparama.py' adding 'mmtbx/command_line/debug_riding.py' adding 'mmtbx/command_line/density_modification.py' adding 'mmtbx/command_line/development_aev.py' adding 'mmtbx/command_line/development_fem.py' adding 'mmtbx/command_line/distance_difference.py' adding 'mmtbx/command_line/dynamics.py' adding 'mmtbx/command_line/electrons.py' adding 'mmtbx/command_line/emringer.py' adding 'mmtbx/command_line/emringer_score.py' adding 'mmtbx/command_line/estimate_bijvoet_ratio.py' adding 'mmtbx/command_line/f000.py' adding 'mmtbx/command_line/fab_elbow_angle.py' adding 'mmtbx/command_line/fake_f_obs.py' adding 'mmtbx/command_line/fetch_pdb.py' adding 'mmtbx/command_line/find_peaks_holes.py' adding 'mmtbx/command_line/find_residue_in_pdb.py' adding 'mmtbx/command_line/find_tls_groups.py' adding 'mmtbx/command_line/fmodel.py' adding 'mmtbx/command_line/fobs_minus_fobs_map.py' adding 'mmtbx/command_line/geometry_minimization.py' adding 'mmtbx/command_line/grow_density.py' adding 'mmtbx/command_line/hbond.py' adding 'mmtbx/command_line/helix_sheet_recs_as_pdb_files.py' adding 'mmtbx/command_line/holton_geometry_validation.py' adding 'mmtbx/command_line/hydrogenate.py' adding 'mmtbx/command_line/kinemage.py' adding 'mmtbx/command_line/ligand_restraints_validation.py' adding 'mmtbx/command_line/map_box.py' adding 'mmtbx/command_line/map_comparison.py' adding 'mmtbx/command_line/map_to_model_histogram.py' adding 'mmtbx/command_line/map_to_structure_factors.py' adding 'mmtbx/command_line/maps.py' adding 'mmtbx/command_line/mask.py' adding 'mmtbx/command_line/massage_data.py' adding 'mmtbx/command_line/matthews.py' adding 'mmtbx/command_line/maximum_entropy_map.py' adding 'mmtbx/command_line/model_idealization.py' adding 'mmtbx/command_line/model_map.py' adding 'mmtbx/command_line/model_model_distances.py' adding 'mmtbx/command_line/model_vs_data.py' adding 'mmtbx/command_line/model_vs_map.py' adding 'mmtbx/command_line/model_vs_sequence.py' adding 'mmtbx/command_line/models_as_chains.py' adding 'mmtbx/command_line/molprobity.py' adding 'mmtbx/command_line/mon_lib_cif_triage.py' adding 'mmtbx/command_line/mp_geo.py' adding 'mmtbx/command_line/mp_validate_bonds.py' adding 'mmtbx/command_line/mtz2map.py' adding 'mmtbx/command_line/next_gen_atom_typing.py' adding 'mmtbx/command_line/next_gen_residue_typing.py' adding 'mmtbx/command_line/nonbonded_overlaps.py' adding 'mmtbx/command_line/omegalyze.py' adding 'mmtbx/command_line/pdb_atom_selection.py' adding 'mmtbx/command_line/pdb_interpretation.py' adding 'mmtbx/command_line/pdbtools.py' adding 'mmtbx/command_line/perigee.py' adding 'mmtbx/command_line/plan_sad_experiment.py' adding 'mmtbx/command_line/polder.py' adding 'mmtbx/command_line/prepare_pdb_deposition.py' adding 'mmtbx/command_line/probe2.py' adding 'mmtbx/command_line/probescore_ligand.py' adding 'mmtbx/command_line/process_predicted_model.py' adding 'mmtbx/command_line/prune_model.py' adding 'mmtbx/command_line/quantum_interface.py' adding 'mmtbx/command_line/r_factor_statistics.py' adding 'mmtbx/command_line/rama_z.py' adding 'mmtbx/command_line/ramalyze.py' adding 'mmtbx/command_line/rank_scale_map.py' adding 'mmtbx/command_line/real_space_correlation.py' adding 'mmtbx/command_line/real_space_diff_map.py' adding 'mmtbx/command_line/rebuild_cablam_cache.py' adding 'mmtbx/command_line/rebuild_rotarama_cache.py' adding 'mmtbx/command_line/reciprocal_space_arrays.py' adding 'mmtbx/command_line/reduce2.py' adding 'mmtbx/command_line/reduce_cryoem_resolution.py' adding 'mmtbx/command_line/refine_anomalous_substructure.py' adding 'mmtbx/command_line/remove_outliers.py' adding 'mmtbx/command_line/ribbons.py' adding 'mmtbx/command_line/rigid_bond_test.py' adding 'mmtbx/command_line/ringer.py' adding 'mmtbx/command_line/rna_validate.py' adding 'mmtbx/command_line/rna_validate_bonds.py' adding 'mmtbx/command_line/rna_validate_puckers.py' adding 'mmtbx/command_line/rna_validate_suites.py' adding 'mmtbx/command_line/rotalyze.py' adding 'mmtbx/command_line/search_pdb_symmetry.py' adding 'mmtbx/command_line/secondary_structure_restraints.py' adding 'mmtbx/command_line/secondary_structure_validation.py' adding 'mmtbx/command_line/select_best_starting_model.py' adding 'mmtbx/command_line/show_r_factors_by_shell.py' adding 'mmtbx/command_line/sisa.py' adding 'mmtbx/command_line/sort_hetatms.py' adding 'mmtbx/command_line/ss_idealization.py' adding 'mmtbx/command_line/suitename.py' adding 'mmtbx/command_line/suitename_old.py' adding 'mmtbx/command_line/super.py' adding 'mmtbx/command_line/superpose.py' adding 'mmtbx/command_line/taam_minus_iam.py' adding 'mmtbx/command_line/table_one.py' adding 'mmtbx/command_line/tls.py' adding 'mmtbx/command_line/tls_analysis.py' adding 'mmtbx/command_line/tls_as_xyz.py' adding 'mmtbx/command_line/undowser.py' adding 'mmtbx/command_line/undowser2.py' adding 'mmtbx/command_line/validate_H_cl_app.py' adding 'mmtbx/command_line/validate_ligands.py' adding 'mmtbx/command_line/validation_summary.py' adding 'mmtbx/command_line/verify_mon_lib_data.py' adding 'mmtbx/command_line/water_b_factors.py' adding 'mmtbx/command_line/where_is_that_cif_file.py' adding 'mmtbx/command_line/xmanip.py' adding 'mmtbx/command_line/xtrapol8.py' adding 'mmtbx/command_line/xtriage.py' adding 'mmtbx/conformation_dependent_library/LinkedResidues.py' adding 'mmtbx/conformation_dependent_library/__init__.py' adding 'mmtbx/conformation_dependent_library/altloc_weighting.py' adding 'mmtbx/conformation_dependent_library/bond_angle_registry.py' adding 'mmtbx/conformation_dependent_library/cdl_database.py' adding 'mmtbx/conformation_dependent_library/cdl_setup.py' adding 'mmtbx/conformation_dependent_library/cdl_svl_database.py' adding 'mmtbx/conformation_dependent_library/cdl_utils.py' adding 'mmtbx/conformation_dependent_library/check_cdl_database.py' adding 'mmtbx/conformation_dependent_library/density_dependent_restraints.py' adding 'mmtbx/conformation_dependent_library/enol_peptide_restraints.py' adding 'mmtbx/conformation_dependent_library/histidines.py' adding 'mmtbx/conformation_dependent_library/hpdl_database.py' adding 'mmtbx/conformation_dependent_library/hydrogen_bonding.py' adding 'mmtbx/conformation_dependent_library/investigate_rotamer_space.py' adding 'mmtbx/conformation_dependent_library/mcl.py' adding 'mmtbx/conformation_dependent_library/mcl_sf4_coordination.py' adding 'mmtbx/conformation_dependent_library/metal_coordination_library.py' adding 'mmtbx/conformation_dependent_library/multi_base_class.py' adding 'mmtbx/conformation_dependent_library/multi_residue_cdl_class.py' adding 'mmtbx/conformation_dependent_library/multi_residue_class.py' adding 'mmtbx/conformation_dependent_library/nucleotides.py' adding 'mmtbx/conformation_dependent_library/omega.py' adding 'mmtbx/conformation_dependent_library/omega_database.py' adding 'mmtbx/conformation_dependent_library/pH_dependent_restraints.py' adding 'mmtbx/conformation_dependent_library/rdl_database.py' adding 'mmtbx/conformation_dependent_library/rotamers.py' adding 'mmtbx/conformation_dependent_library/sf4_restraints.py' adding 'mmtbx/conformation_dependent_library/testing_utils.py' adding 'mmtbx/conformation_dependent_library/tst_cdl.py' adding 'mmtbx/conformation_dependent_library/tst_cdl_esd.py' adding 'mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py' adding 'mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py' adding 'mmtbx/conformation_dependent_library/tst_enol_peptide.py' adding 'mmtbx/conformation_dependent_library/tst_hpdl.py' adding 'mmtbx/conformation_dependent_library/tst_mcl_01.py' adding 'mmtbx/conformation_dependent_library/tst_mcl_02.py' adding 'mmtbx/conformation_dependent_library/tst_mcl_03.py' adding 'mmtbx/conformation_dependent_library/tst_multi_residue_rna.py' adding 'mmtbx/conformation_dependent_library/tst_mutli_residue.py' adding 'mmtbx/conformation_dependent_library/tst_omega_cdl.py' adding 'mmtbx/conformation_dependent_library/tst_pH_mechanism.py' adding 'mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py' adding 'mmtbx/conformation_dependent_library/tst_rdl.py' adding 'mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py' adding 'mmtbx/conformation_dependent_library/utils.py' adding 'mmtbx/den/__init__.py' adding 'mmtbx/den/plot_weights.py' adding 'mmtbx/den/refinement.py' adding 'mmtbx/density_modification/__init__.py' adding 'mmtbx/density_modification/tst_density_modification.py' adding 'mmtbx/disorder/__init__.py' adding 'mmtbx/disorder/analyze_model.py' adding 'mmtbx/disorder/backbone.py' adding 'mmtbx/disorder/tst.py' adding 'mmtbx/disorder/tst_analyze_model.py' adding 'mmtbx/disorder/tst_backbone.py' adding 'mmtbx/dynamics/__init__.py' adding 'mmtbx/dynamics/cartesian_dynamics.py' adding 'mmtbx/dynamics/constants.py' adding 'mmtbx/dynamics/ensemble_cd.py' adding 'mmtbx/dynamics/simulated_annealing.py' adding 'mmtbx/dynamics/tst_cartesian_dynamics.py' adding 'mmtbx/dynamics/tst_sa.py' adding 'mmtbx/f_model/__init__.py' adding 'mmtbx/f_model/f_model.py' adding 'mmtbx/f_model/f_model_info.py' adding 'mmtbx/geometry/__init__.py' adding 'mmtbx/geometry/altloc.py' adding 'mmtbx/geometry/asa.py' adding 'mmtbx/geometry/clash.py' adding 'mmtbx/geometry/indexing.py' adding 'mmtbx/geometry/shared_types.py' adding 'mmtbx/geometry/sphere_surface_sampling.py' adding 'mmtbx/geometry/topology.py' adding 'mmtbx/geometry_restraints/__init__.py' adding 'mmtbx/geometry_restraints/afitt.py' adding 'mmtbx/geometry_restraints/base_qm_manager.py' adding 'mmtbx/geometry_restraints/c_beta.py' adding 'mmtbx/geometry_restraints/external.py' adding 'mmtbx/geometry_restraints/geo_file_parsing.py' adding 'mmtbx/geometry_restraints/mopac_manager.py' adding 'mmtbx/geometry_restraints/orca_manager.py' adding 'mmtbx/geometry_restraints/qi_utils.py' adding 'mmtbx/geometry_restraints/qm_manager.py' adding 'mmtbx/geometry_restraints/quantum_interface.py' adding 'mmtbx/geometry_restraints/quantum_restraints_manager.py' adding 'mmtbx/geometry_restraints/ramachandran.py' adding 'mmtbx/geometry_restraints/reference.py' adding 'mmtbx/geometry_restraints/tst_c_beta_restraints.py' adding 'mmtbx/geometry_restraints/tst_geo_file_parsing.py' adding 'mmtbx/geometry_restraints/tst_manager.py' adding 'mmtbx/geometry_restraints/tst_orca_manager.py' adding 'mmtbx/geometry_restraints/tst_ramachandran.py' adding 'mmtbx/geometry_restraints/tst_reference_coordinate.py' adding 'mmtbx/geometry_restraints/tst_reference_coordinate2.py' adding 'mmtbx/geometry_restraints/tst_replace_in_place.py' adding 'mmtbx/geometry_restraints/tst_xtb_manager.py' adding 'mmtbx/geometry_restraints/xtb_manager.py' adding 'mmtbx/geometry_restraints/torsion_restraints/__init__.py' adding 'mmtbx/geometry_restraints/torsion_restraints/reference_model.py' adding 'mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py' adding 'mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_reference_hbond.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_reference_ramachandran.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_ter_records.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py' adding 'mmtbx/geometry_restraints/torsion_restraints/utils.py' adding 'mmtbx/hydrogens/__init__.py' adding 'mmtbx/hydrogens/build_hydrogens.py' adding 'mmtbx/hydrogens/connectivity.py' adding 'mmtbx/hydrogens/neutron_utils.py' adding 'mmtbx/hydrogens/parameterization.py' adding 'mmtbx/hydrogens/reduce_hydrogen.py' adding 'mmtbx/hydrogens/riding.py' adding 'mmtbx/hydrogens/specialised_hydrogen_atoms.py' adding 'mmtbx/hydrogens/tst.py' adding 'mmtbx/hydrogens/tst_add_hydrogen.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_1.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_10.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_11.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_12.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_13.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_14.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_15.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_16.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_2.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_3.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_4.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_5.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_6.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_7.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_8.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_9.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_time.py' adding 'mmtbx/hydrogens/tst_connectivity.py' adding 'mmtbx/hydrogens/tst_const_dihedral.py' adding 'mmtbx/hydrogens/tst_parameterization_1.py' adding 'mmtbx/hydrogens/tst_parameterization_2.py' adding 'mmtbx/hydrogens/tst_parameterization_3.py' adding 'mmtbx/hydrogens/tst_parameterization_4.py' adding 'mmtbx/hydrogens/tst_parameterization_5.py' adding 'mmtbx/hydrogens/tst_parameterization_6.py' adding 'mmtbx/hydrogens/tst_parameterization_7.py' adding 'mmtbx/hydrogens/tst_parameterization_8.py' adding 'mmtbx/hydrogens/tst_parameterization_9.py' adding 'mmtbx/hydrogens/tst_riding_coefficients.py' adding 'mmtbx/hydrogens/tst_riding_fd_1.py' adding 'mmtbx/hydrogens/tst_riding_fd_2.py' adding 'mmtbx/hydrogens/tst_riding_fd_3.py' adding 'mmtbx/hydrogens/tst_riding_fd_4.py' adding 'mmtbx/hydrogens/tst_riding_fd_5.py' adding 'mmtbx/hydrogens/tst_riding_manager.py' adding 'mmtbx/hydrogens/tst_riding_minimize.py' adding 'mmtbx/hydrogens/tst_validate_H.py' adding 'mmtbx/hydrogens/validate_H.py' adding 'mmtbx/ias/__init__.py' adding 'mmtbx/ias/tst_ias.py' adding 'mmtbx/idealized_aa_residues/__init__.py' adding 'mmtbx/idealized_aa_residues/all_his.py' adding 'mmtbx/idealized_aa_residues/rotamer_manager.py' adding 'mmtbx/idealized_aa_residues/sample_rotamers.py' adding 'mmtbx/idealized_aa_residues/tst.py' adding 'mmtbx/ions/__init__.py' adding 'mmtbx/ions/build.py' adding 'mmtbx/ions/environment.py' adding 'mmtbx/ions/geometry.py' adding 'mmtbx/ions/halides.py' adding 'mmtbx/ions/identify.py' adding 'mmtbx/ions/tst_environment.py' adding 'mmtbx/ions/tst_geometries.py' adding 'mmtbx/ions/tst_parameters.py' adding 'mmtbx/ions/tst_pick_approx_zn.py' adding 'mmtbx/ions/tst_pick_ca.py' adding 'mmtbx/ions/tst_pick_ca_svm.py' adding 'mmtbx/ions/tst_pick_k.py' adding 'mmtbx/ions/tst_pick_mg.py' adding 'mmtbx/ions/tst_pickle.py' adding 'mmtbx/ions/tst_symmetry_axis.py' adding 'mmtbx/ions/tst_utils.py' adding 'mmtbx/ions/tst_validate_ca.py' adding 'mmtbx/ions/tst_validate_mg.py' adding 'mmtbx/ions/utils.py' adding 'mmtbx/ions/svm/__init__.py' adding 'mmtbx/ions/svm/dump_sites.py' adding 'mmtbx/ions/svm/tst_classifier_01.py' adding 'mmtbx/ions/svm/tst_classifier_02.py' adding 'mmtbx/ions/svm/utils.py' adding 'mmtbx/kinemage/__init__.py' adding 'mmtbx/kinemage/nrubs.py' adding 'mmtbx/kinemage/ribbon_rendering.py' adding 'mmtbx/kinemage/ribbons.py' adding 'mmtbx/kinemage/tst_validation.py' adding 'mmtbx/kinemage/validation.py' adding 'mmtbx/ligands/__init__.py' adding 'mmtbx/ligands/chemistry.py' adding 'mmtbx/ligands/electrons.py' adding 'mmtbx/ligands/hierarchy_utils.py' adding 'mmtbx/ligands/rdkit_utils.py' adding 'mmtbx/ligands/ready_set_basics.py' adding 'mmtbx/ligands/ready_set_utils.py' adding 'mmtbx/ligands/tst_electron_scripting.py' adding 'mmtbx/ligands/tst_ready_set_utils.py' adding 'mmtbx/ligands/tst_xtal_screens.py' adding 'mmtbx/ligands/xtal_screens.py' adding 'mmtbx/maps/__init__.py' adding 'mmtbx/maps/composite_omit_map.py' adding 'mmtbx/maps/correlation.py' adding 'mmtbx/maps/fem.py' adding 'mmtbx/maps/fobs_minus_fobs_map.py' adding 'mmtbx/maps/kick.py' adding 'mmtbx/maps/map_model_cc.py' adding 'mmtbx/maps/mtriage.py' adding 'mmtbx/maps/polder.py' adding 'mmtbx/maps/superpose.py' adding 'mmtbx/maps/tst_composite_omit_map.py' adding 'mmtbx/maps/tst_composite_omit_map_2.py' adding 'mmtbx/maps/tst_composite_omit_map_3.py' adding 'mmtbx/maps/tst_correlation.py' adding 'mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py' adding 'mmtbx/maps/utils.py' adding 'mmtbx/maps/xtrapol8.py' adding 'mmtbx/masks/__init__.py' adding 'mmtbx/masks/tst_asu_mask.py' adding 'mmtbx/masks/tst_masks.py' adding 'mmtbx/max_lik/__init__.py' adding 'mmtbx/max_lik/max_like_non_uniform.py' adding 'mmtbx/max_lik/maxlik.py' adding 'mmtbx/max_lik/tst_max_lik.py' adding 'mmtbx/max_lik/tst_maxlik.py' adding 'mmtbx/model/__init__.py' adding 'mmtbx/model/model.py' adding 'mmtbx/model/restraints.py' adding 'mmtbx/model/statistics.py' adding 'mmtbx/model/utils.py' adding 'mmtbx/monomer_library/__init__.py' adding 'mmtbx/monomer_library/bondlength_defaults.py' adding 'mmtbx/monomer_library/cif_triage.py' adding 'mmtbx/monomer_library/cif_types.py' adding 'mmtbx/monomer_library/conformation_dependent_restraints.py' adding 'mmtbx/monomer_library/conv_v2_v3.py' adding 'mmtbx/monomer_library/correct_hydrogen_geometries.py' adding 'mmtbx/monomer_library/geostd_utils.py' adding 'mmtbx/monomer_library/glyco_chiral_values.py' adding 'mmtbx/monomer_library/glyco_utils.py' adding 'mmtbx/monomer_library/hydrogen_restrictions.py' adding 'mmtbx/monomer_library/idealized_aa.py' adding 'mmtbx/monomer_library/linking_mixins.py' adding 'mmtbx/monomer_library/linking_setup.py' adding 'mmtbx/monomer_library/linking_utils.py' adding 'mmtbx/monomer_library/mmtbx_utils.py' adding 'mmtbx/monomer_library/pdb_interpretation.py' adding 'mmtbx/monomer_library/populate_auto_linking_origin_ids.py' adding 'mmtbx/monomer_library/rna_sugar_pucker_analysis.py' adding 'mmtbx/monomer_library/rotamer_utils.py' adding 'mmtbx/monomer_library/server.py' adding 'mmtbx/monomer_library/tst_all_cif_files.py' adding 'mmtbx/monomer_library/tst_carbo_linking.py' adding 'mmtbx/monomer_library/tst_chg.py' adding 'mmtbx/monomer_library/tst_cif_triage.py' adding 'mmtbx/monomer_library/tst_cif_types.py' adding 'mmtbx/monomer_library/tst_correct_hydrogens.py' adding 'mmtbx/monomer_library/tst_deuterium_terminii.py' adding 'mmtbx/monomer_library/tst_geo_reduce_for_tardy.py' adding 'mmtbx/monomer_library/tst_glyco_coordination.py' adding 'mmtbx/monomer_library/tst_glyco_hand.py' adding 'mmtbx/monomer_library/tst_idealized_aa.py' adding 'mmtbx/monomer_library/tst_iron_sulfur_clusters.py' adding 'mmtbx/monomer_library/tst_linking.py' adding 'mmtbx/monomer_library/tst_metal_coordination.py' adding 'mmtbx/monomer_library/tst_motif.py' adding 'mmtbx/monomer_library/tst_neutron_distance.py' adding 'mmtbx/monomer_library/tst_paral_geo.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_2.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_3.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_4.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_5.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py' adding 'mmtbx/monomer_library/tst_protein_interpretation.py' adding 'mmtbx/monomer_library/tst_rna_dna_interpretation.py' adding 'mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py' adding 'mmtbx/monomer_library/tst_rotamer_utils.py' adding 'mmtbx/monomer_library/tst_selection.py' adding 'mmtbx/monomer_library/tst_server.py' adding 'mmtbx/monomer_library/tst_superpose_ideal.py' adding 'mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py' adding 'mmtbx/monomer_library/tst_user_supplied_library.py' adding 'mmtbx/nci/__init__.py' adding 'mmtbx/nci/data_filtering.py' adding 'mmtbx/nci/hbond.py' adding 'mmtbx/nci/skew_kurt_plot.py' adding 'mmtbx/nci/tst_hbond.py' adding 'mmtbx/ncs/__init__.py' adding 'mmtbx/ncs/cartesian_restraints.py' adding 'mmtbx/ncs/ligands.py' adding 'mmtbx/ncs/ncs.py' adding 'mmtbx/ncs/ncs_params.py' adding 'mmtbx/ncs/ncs_restraints_group_list.py' adding 'mmtbx/ncs/ncs_search.py' adding 'mmtbx/ncs/ncs_utils.py' adding 'mmtbx/ncs/tncs.py' adding 'mmtbx/pair_interaction/__init__.py' adding 'mmtbx/pair_interaction/pair_interaction.py' adding 'mmtbx/pair_interaction/tst_00.py' adding 'mmtbx/pair_interaction/tst_01.py' adding 'mmtbx/pair_interaction/tst_02.py' adding 'mmtbx/pair_interaction/tst_03.py' adding 'mmtbx/pair_interaction/tst_04.py' adding 'mmtbx/pair_interaction/tst_05.py' adding 'mmtbx/polygon/__init__.py' adding 'mmtbx/polygon/output.py' adding 'mmtbx/polygon/tst.py' adding 'mmtbx/polygon/tst_gui.py' adding 'mmtbx/polygon/tst_polygon_data.py' adding 'mmtbx/probe/AtomTypes.py' adding 'mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py' adding 'mmtbx/probe/Helpers.py' adding 'mmtbx/probe/__init__.py' adding 'mmtbx/probe/tst_mmtbx_probe_ext.py' adding 'mmtbx/programs/__init__.py' adding 'mmtbx/programs/arginine_geometry.py' adding 'mmtbx/programs/atom_selection.py' adding 'mmtbx/programs/atom_valence_simple.py' adding 'mmtbx/programs/barbed_wire_analysis.py' adding 'mmtbx/programs/cablam.py' adding 'mmtbx/programs/cablam_idealization.py' adding 'mmtbx/programs/cbetadev.py' adding 'mmtbx/programs/chiral_validation.py' adding 'mmtbx/programs/clashscore.py' adding 'mmtbx/programs/clashscore2.py' adding 'mmtbx/programs/comparama.py' adding 'mmtbx/programs/debug_riding.py' adding 'mmtbx/programs/elbow_services.py' adding 'mmtbx/programs/emringer.py' adding 'mmtbx/programs/fetch.py' adding 'mmtbx/programs/fmodel.py' adding 'mmtbx/programs/hbond.py' adding 'mmtbx/programs/holton_geometry_validation.py' adding 'mmtbx/programs/hydrogenate.py' adding 'mmtbx/programs/ligand_restraints_validation.py' adding 'mmtbx/programs/mask.py' adding 'mmtbx/programs/matthews.py' adding 'mmtbx/programs/model_vs_sequence.py' adding 'mmtbx/programs/mp_validate_bonds.py' adding 'mmtbx/programs/next_gen_atom_typing.py' adding 'mmtbx/programs/next_gen_residue_typing.py' adding 'mmtbx/programs/nonbonded_overlaps.py' adding 'mmtbx/programs/omegalyze.py' adding 'mmtbx/programs/pdb_as_cif.py' adding 'mmtbx/programs/pdbtools.py' adding 'mmtbx/programs/polder.py' adding 'mmtbx/programs/prepare_pdb_deposition.py' adding 'mmtbx/programs/probe2.py' adding 'mmtbx/programs/probescore_ligand.py' adding 'mmtbx/programs/process_predicted_model.py' adding 'mmtbx/programs/quantum_interface.py' adding 'mmtbx/programs/rama_z.py' adding 'mmtbx/programs/ramalyze.py' adding 'mmtbx/programs/real_space_correlation.py' adding 'mmtbx/programs/reduce2.py' adding 'mmtbx/programs/reduce_cryoem_resolution.py' adding 'mmtbx/programs/ribbons.py' adding 'mmtbx/programs/rna_validate.py' adding 'mmtbx/programs/rna_validate_bonds.py' adding 'mmtbx/programs/rna_validate_puckers.py' adding 'mmtbx/programs/rna_validate_suites.py' adding 'mmtbx/programs/rotalyze.py' adding 'mmtbx/programs/ss_idealization.py' adding 'mmtbx/programs/ss_validation.py' adding 'mmtbx/programs/suitename.py' adding 'mmtbx/programs/suitename_old.py' adding 'mmtbx/programs/taam_minus_iam.py' adding 'mmtbx/programs/undowser.py' adding 'mmtbx/programs/undowser2.py' adding 'mmtbx/programs/validate_ligands.py' adding 'mmtbx/programs/water_b_factors.py' adding 'mmtbx/programs/xtrapol8.py' adding 'mmtbx/real_space/__init__.py' adding 'mmtbx/real_space/tst.py' adding 'mmtbx/reduce/InteractionGraph.py' adding 'mmtbx/reduce/Movers.py' adding 'mmtbx/reduce/Optimizers.py' adding 'mmtbx/reduce/__init__.py' adding 'mmtbx/reduce/tst_mmtbx_reduce_ext.py' adding 'mmtbx/refinement/__init__.py' adding 'mmtbx/refinement/adp_refinement.py' adding 'mmtbx/refinement/anomalous_scatterer_groups.py' adding 'mmtbx/refinement/calculators.py' adding 'mmtbx/refinement/data.py' adding 'mmtbx/refinement/energy_monitor.py' adding 'mmtbx/refinement/flip_peptide_side_chain.py' adding 'mmtbx/refinement/geometry_minimization.py' adding 'mmtbx/refinement/group.py' adding 'mmtbx/refinement/inspect_tardy_trajectory.py' adding 'mmtbx/refinement/minimization.py' adding 'mmtbx/refinement/minimization_monitor.py' adding 'mmtbx/refinement/minimization_ncs_constraints.py' adding 'mmtbx/refinement/occupancies.py' adding 'mmtbx/refinement/orca.py' adding 'mmtbx/refinement/print_statistics.py' adding 'mmtbx/refinement/refinement_flags.py' adding 'mmtbx/refinement/restraints.py' adding 'mmtbx/refinement/rigid_body.py' adding 'mmtbx/refinement/select_best_starting_model.py' adding 'mmtbx/refinement/tardy.py' adding 'mmtbx/refinement/targets.py' adding 'mmtbx/refinement/tst_anomalous_scatterer_groups.py' adding 'mmtbx/refinement/tst_fit_rotamers.py' adding 'mmtbx/refinement/tst_group.py' adding 'mmtbx/refinement/tst_group_2.py' adding 'mmtbx/refinement/tst_misc.py' adding 'mmtbx/refinement/tst_occupancy_selections.py' adding 'mmtbx/refinement/tst_real_space_simple.py' adding 'mmtbx/refinement/tst_refinement_flags.py' adding 'mmtbx/refinement/tst_rigid_body.py' adding 'mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py' adding 'mmtbx/refinement/tst_select_best_starting_model.py' adding 'mmtbx/refinement/utils.py' adding 'mmtbx/refinement/weights.py' adding 'mmtbx/refinement/weights_params.py' adding 'mmtbx/refinement/wrappers.py' adding 'mmtbx/refinement/ensemble_refinement/__init__.py' adding 'mmtbx/refinement/ensemble_refinement/ensemble_probability.py' adding 'mmtbx/refinement/ensemble_refinement/ensemble_utils.py' adding 'mmtbx/refinement/real_space/__init__.py' adding 'mmtbx/refinement/real_space/adp.py' adding 'mmtbx/refinement/real_space/explode_and_refine.py' adding 'mmtbx/refinement/real_space/fit_his.py' adding 'mmtbx/refinement/real_space/fit_residue.py' adding 'mmtbx/refinement/real_space/fit_residues.py' adding 'mmtbx/refinement/real_space/fit_small_molecule.py' adding 'mmtbx/refinement/real_space/fit_water.py' adding 'mmtbx/refinement/real_space/individual_sites.py' adding 'mmtbx/refinement/real_space/occupancy.py' adding 'mmtbx/refinement/real_space/rigid_body.py' adding 'mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_0.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_0H.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_1.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_1H.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_2.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_3.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_4.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_5.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_6.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_7.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_1.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_1H.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_2.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_3.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_4.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_5.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_6.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_selection.py' adding 'mmtbx/refinement/real_space/tst_fit_water.py' adding 'mmtbx/refinement/real_space/tst_individual_sites_1.py' adding 'mmtbx/refinement/real_space/tst_individual_sites_2.py' adding 'mmtbx/refinement/real_space/tst_individual_sites_3.py' adding 'mmtbx/refinement/real_space/tst_monitor.py' adding 'mmtbx/refinement/real_space/tst_rigid_body.py' adding 'mmtbx/refinement/real_space/tst_weight.py' adding 'mmtbx/refinement/real_space/utils.py' adding 'mmtbx/refinement/real_space/weight.py' adding 'mmtbx/regression/__init__.py' adding 'mmtbx/regression/make_fake_anomalous_data.py' adding 'mmtbx/regression/tst_add_arrows_on_plot.py' adding 'mmtbx/regression/tst_add_h_to_water.py' adding 'mmtbx/regression/tst_adp_restraints.py' adding 'mmtbx/regression/tst_alignment.py' adding 'mmtbx/regression/tst_altloc_chain_break.py' adding 'mmtbx/regression/tst_altloc_remediate.py' adding 'mmtbx/regression/tst_angle.py' adding 'mmtbx/regression/tst_anomalous_substructure.py' adding 'mmtbx/regression/tst_apply_cif_restraints.py' adding 'mmtbx/regression/tst_arginine_geometry.py' adding 'mmtbx/regression/tst_cc_star.py' adding 'mmtbx/regression/tst_chain_comparison.py' adding 'mmtbx/regression/tst_chain_comparison_cif.py' adding 'mmtbx/regression/tst_cif_as_mtz_wavelengths.py' adding 'mmtbx/regression/tst_cis_trans_peptide_link.py' adding 'mmtbx/regression/tst_clashes.py' adding 'mmtbx/regression/tst_command_line_input.py' adding 'mmtbx/regression/tst_domains_from_pae.py' adding 'mmtbx/regression/tst_domains_from_pae_cif.py' adding 'mmtbx/regression/tst_dynamics_cli.py' adding 'mmtbx/regression/tst_examples.py' adding 'mmtbx/regression/tst_find_ncs.py' adding 'mmtbx/regression/tst_find_ss_structure.py' adding 'mmtbx/regression/tst_find_ss_structure_cif.py' adding 'mmtbx/regression/tst_flipping_his.py' adding 'mmtbx/regression/tst_fmodel.py' adding 'mmtbx/regression/tst_fmodel_2.py' adding 'mmtbx/regression/tst_fmodel_and_dm.py' adding 'mmtbx/regression/tst_fmodel_fd.py' adding 'mmtbx/regression/tst_fmodel_misc.py' adding 'mmtbx/regression/tst_fmodel_no_cryst1.py' adding 'mmtbx/regression/tst_geo_min_restraints_phil.py' adding 'mmtbx/regression/tst_geometry_minimization.py' adding 'mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py' adding 'mmtbx/regression/tst_holton_geometry_validation.py' adding 'mmtbx/regression/tst_isomorphous_difference_misc.py' adding 'mmtbx/regression/tst_ligand_interactions.py' adding 'mmtbx/regression/tst_ligand_ncs.py' adding 'mmtbx/regression/tst_loop_closure.py' adding 'mmtbx/regression/tst_lrv.py' adding 'mmtbx/regression/tst_map_model_cc.py' adding 'mmtbx/regression/tst_map_type_parser.py' adding 'mmtbx/regression/tst_maps_misc.py' adding 'mmtbx/regression/tst_metal_link_1.py' adding 'mmtbx/regression/tst_minimize_chain.py' adding 'mmtbx/regression/tst_ml_estimate.py' adding 'mmtbx/regression/tst_mmtbx_refinement_wrappers.py' adding 'mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py' adding 'mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py' adding 'mmtbx/regression/tst_model_map.py' adding 'mmtbx/regression/tst_model_vs_map.py' adding 'mmtbx/regression/tst_model_vs_sequence.py' adding 'mmtbx/regression/tst_models_to_from_chains.py' adding 'mmtbx/regression/tst_msa.py' adding 'mmtbx/regression/tst_mtz2map.py' adding 'mmtbx/regression/tst_multi_residue_class.py' adding 'mmtbx/regression/tst_ordered_solvent.py' adding 'mmtbx/regression/tst_origin_ids.py' adding 'mmtbx/regression/tst_pdbtools.py' adding 'mmtbx/regression/tst_polder.py' adding 'mmtbx/regression/tst_polder_1.py' adding 'mmtbx/regression/tst_polder_2.py' adding 'mmtbx/regression/tst_polder_3.py' adding 'mmtbx/regression/tst_polder_4.py' adding 'mmtbx/regression/tst_polder_box.py' adding 'mmtbx/regression/tst_polder_ccs.py' adding 'mmtbx/regression/tst_probe.py' adding 'mmtbx/regression/tst_process_predicted_model.py' adding 'mmtbx/regression/tst_process_predicted_model_cif.py' adding 'mmtbx/regression/tst_prune_model.py' adding 'mmtbx/regression/tst_psi_phi_extraction.py' adding 'mmtbx/regression/tst_rank_scale_map.py' adding 'mmtbx/regression/tst_rdkit_utils_fragmentation.py' adding 'mmtbx/regression/tst_rdkit_utils_molecule.py' adding 'mmtbx/regression/tst_real_space_correlation.py' adding 'mmtbx/regression/tst_reduce.py' adding 'mmtbx/regression/tst_reduce2_no_symmetry.py' adding 'mmtbx/regression/tst_reduce_cryoem_resolution.py' adding 'mmtbx/regression/tst_reduce_custom_bond.py' adding 'mmtbx/regression/tst_reduce_switch.py' adding 'mmtbx/regression/tst_reduce_timeout.py' adding 'mmtbx/regression/tst_refine_anomalous_substructure.py' adding 'mmtbx/regression/tst_regularize_from_pdb.py' adding 'mmtbx/regression/tst_regularize_from_pdb_cif.py' adding 'mmtbx/regression/tst_ribbons.py' adding 'mmtbx/regression/tst_rigid_bond_test.py' adding 'mmtbx/regression/tst_ringer.py' adding 'mmtbx/regression/tst_sampled_model_density.py' adding 'mmtbx/regression/tst_scattering_table.py' adding 'mmtbx/regression/tst_scattering_type_registry.py' adding 'mmtbx/regression/tst_schrodinger_interface.py' adding 'mmtbx/regression/tst_sequence_validation.py' adding 'mmtbx/regression/tst_sort_hetatms.py' adding 'mmtbx/regression/tst_special_term_at_end.py' adding 'mmtbx/regression/tst_ss_validation_long_chainids.py' adding 'mmtbx/regression/tst_statistics_output.py' adding 'mmtbx/regression/tst_superpose.py' adding 'mmtbx/regression/tst_table_one.py' adding 'mmtbx/regression/tst_utils.py' adding 'mmtbx/regression/tst_validate_ligands.py' adding 'mmtbx/regression/tst_validate_ligands_2.py' adding 'mmtbx/regression/tst_validate_ligands_3.py' adding 'mmtbx/regression/tst_validate_ligands_4.py' adding 'mmtbx/regression/tst_validation_summary.py' adding 'mmtbx/regression/model/__init__.py' adding 'mmtbx/regression/model/tst_model.py' adding 'mmtbx/regression/model/tst_model_2.py' adding 'mmtbx/regression/model/tst_model_biomt_mtrix.py' adding 'mmtbx/regression/model/tst_model_biomt_mtrix_2.py' adding 'mmtbx/regression/model/tst_model_cart_ref_restraints.py' adding 'mmtbx/regression/model/tst_model_dedeuterate.py' adding 'mmtbx/regression/model/tst_model_get_vdw_radii.py' adding 'mmtbx/regression/model/tst_model_merge.py' adding 'mmtbx/regression/model/tst_model_mtrix.py' adding 'mmtbx/regression/model/tst_model_ncs.py' adding 'mmtbx/regression/model/tst_model_neutralize_scatterers.py' adding 'mmtbx/regression/model/tst_model_pairs_within.py' adding 'mmtbx/regression/model/tst_model_ramachandran.py' adding 'mmtbx/regression/model/tst_model_remove_alternative_conformations.py' adding 'mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py' adding 'mmtbx/regression/model/tst_model_symmetry.py' adding 'mmtbx/regression/model/tst_model_tors_ref_restraints.py' adding 'mmtbx/regression/model/tst_model_utils_merge_models.py' adding 'mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py' adding 'mmtbx/regression/ncs/__init__.py' adding 'mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py' adding 'mmtbx/regression/ncs/tst_minimization_ncs_constraints.py' adding 'mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py' adding 'mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py' adding 'mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py' adding 'mmtbx/regression/ncs/tst_ncs_restraints_group_list.py' adding 'mmtbx/regression/ncs/tst_ncs_search.py' adding 'mmtbx/regression/ncs/tst_ncs_search_flips.py' adding 'mmtbx/regression/ncs/tst_ncs_utils.py' adding 'mmtbx/regression/ncs/tst_restraints.py' adding 'mmtbx/regression/tls/__init__.py' adding 'mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py' adding 'mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py' adding 'mmtbx/regression/tls/tst_get_t_scheme.py' adding 'mmtbx/regression/tls/tst_tls.py' adding 'mmtbx/regression/tls/tst_tls_analysis.py' adding 'mmtbx/regression/tls/tst_tls_as_xyz.py' adding 'mmtbx/regression/tls/tst_tls_optimise_amplitudes.py' adding 'mmtbx/regression/tls/tst_tls_refinement_fft.py' adding 'mmtbx/regression/tls/tst_tls_utils.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py' adding 'mmtbx/ringer/__init__.py' adding 'mmtbx/ringer/em_rolling.py' adding 'mmtbx/ringer/em_rscc.py' adding 'mmtbx/ringer/em_scoring.py' adding 'mmtbx/ringer/emringer.py' adding 'mmtbx/ringer/tst_em_rscc.py' adding 'mmtbx/ringer/tst_emringer.py' adding 'mmtbx/rotamer/__init__.py' adding 'mmtbx/rotamer/graphics.py' adding 'mmtbx/rotamer/n_dim_table.py' adding 'mmtbx/rotamer/nqh.py' adding 'mmtbx/rotamer/ramachandran_eval.py' adding 'mmtbx/rotamer/ramachandran_eval_deprecated.py' adding 'mmtbx/rotamer/rotamer_eval.py' adding 'mmtbx/rotamer/sidechain_angles.py' adding 'mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py' adding 'mmtbx/rotamer/tst_rotamer_eval.py' adding 'mmtbx/rsr/__init__.py' adding 'mmtbx/rsr/tst.py' adding 'mmtbx/scaling/__init__.py' adding 'mmtbx/scaling/absence_likelihood.py' adding 'mmtbx/scaling/absences.py' adding 'mmtbx/scaling/absolute_scaling.py' adding 'mmtbx/scaling/basic_analyses.py' adding 'mmtbx/scaling/bayesian_estimator.py' adding 'mmtbx/scaling/data_statistics.py' adding 'mmtbx/scaling/fa_estimation.py' adding 'mmtbx/scaling/make_param.py' adding 'mmtbx/scaling/massage_twin_detwin_data.py' adding 'mmtbx/scaling/matthews.py' adding 'mmtbx/scaling/mean_f_rms_f.py' adding 'mmtbx/scaling/outlier_plots.py' adding 'mmtbx/scaling/outlier_rejection.py' adding 'mmtbx/scaling/pair_analyses.py' adding 'mmtbx/scaling/plan_sad_experiment.py' adding 'mmtbx/scaling/pre_scale.py' adding 'mmtbx/scaling/random_omit.py' adding 'mmtbx/scaling/relative_scaling.py' adding 'mmtbx/scaling/relative_wilson.py' adding 'mmtbx/scaling/remove_outliers.py' adding 'mmtbx/scaling/sigmaa_estimation.py' adding 'mmtbx/scaling/ta_alpha_beta_calc.py' adding 'mmtbx/scaling/thorough_outlier_test.py' adding 'mmtbx/scaling/tst_absences.py' adding 'mmtbx/scaling/tst_bayesian_estimator.py' adding 'mmtbx/scaling/tst_massage_data.py' adding 'mmtbx/scaling/tst_mean_f_rms_f.py' adding 'mmtbx/scaling/tst_outlier.py' adding 'mmtbx/scaling/tst_plan_sad_experiment.py' adding 'mmtbx/scaling/tst_scaling.py' adding 'mmtbx/scaling/tst_sigmaa.py' adding 'mmtbx/scaling/tst_xtriage.py' adding 'mmtbx/scaling/tst_xtriage_twin_analyses.py' adding 'mmtbx/scaling/twin_analyses.py' adding 'mmtbx/scaling/twmad_scale.py' adding 'mmtbx/scaling/xtriage.py' adding 'mmtbx/secondary_structure/__init__.py' adding 'mmtbx/secondary_structure/find_ss_from_ca.py' adding 'mmtbx/secondary_structure/nucleic_acids.py' adding 'mmtbx/secondary_structure/proteins.py' adding 'mmtbx/secondary_structure/regularize_from_pdb.py' adding 'mmtbx/secondary_structure/secondary_structure_params.py' adding 'mmtbx/secondary_structure/ss_validation.py' adding 'mmtbx/secondary_structure/tst.py' adding 'mmtbx/secondary_structure/tst_insertion_codes.py' adding 'mmtbx/secondary_structure/tst_segid.py' adding 'mmtbx/secondary_structure/utils.py' adding 'mmtbx/secondary_structure/build/__init__.py' adding 'mmtbx/secondary_structure/build/ss_idealization.py' adding 'mmtbx/secondary_structure/build/tst_1.py' adding 'mmtbx/secondary_structure/build/tst_2.py' adding 'mmtbx/secondary_structure/build/tst_3.py' adding 'mmtbx/secondary_structure/build/tst_io.py' adding 'mmtbx/secondary_structure/build/tst_ss_id_ncs.py' adding 'mmtbx/sisa/__init__.py' adding 'mmtbx/sisa/optimize/__init__.py' adding 'mmtbx/sisa/optimize/mod_ga.py' adding 'mmtbx/sisa/optimize/mod_input.py' adding 'mmtbx/sisa/optimize/mod_masks.py' adding 'mmtbx/sisa/optimize/mod_mtz.py' adding 'mmtbx/sisa/optimize/mod_optimize.py' adding 'mmtbx/sisa/optimize/mod_util.py' adding 'mmtbx/solvent/__init__.py' adding 'mmtbx/solvent/ensemble_ordered_solvent.py' adding 'mmtbx/solvent/map_to_water.py' adding 'mmtbx/solvent/ordered_solvent.py' adding 'mmtbx/suitename/__init__.py' adding 'mmtbx/suitename/diangle.py' adding 'mmtbx/suitename/dualparse.py' adding 'mmtbx/suitename/mainchain.py' adding 'mmtbx/suitename/suitealyze.py' adding 'mmtbx/suitename/suitename.py' adding 'mmtbx/suitename/suitenamedefs.py' adding 'mmtbx/suitename/suiteninit.py' adding 'mmtbx/suitename/suiteninput.py' adding 'mmtbx/suitename/suitenout.py' adding 'mmtbx/suitename/suites.py' adding 'mmtbx/suitename/transdent.py' adding 'mmtbx/tls/__init__.py' adding 'mmtbx/tls/analysis.py' adding 'mmtbx/tls/command_line.py' adding 'mmtbx/tls/decompose.py' adding 'mmtbx/tls/ladp.py' adding 'mmtbx/tls/optimise_amplitudes.py' adding 'mmtbx/tls/perm10.py' adding 'mmtbx/tls/perm11.py' adding 'mmtbx/tls/perm12.py' adding 'mmtbx/tls/perm13.py' adding 'mmtbx/tls/perm14.py' adding 'mmtbx/tls/perm15.py' adding 'mmtbx/tls/tls_as_xyz.py' adding 'mmtbx/tls/tools.py' adding 'mmtbx/tls/utils.py' adding 'mmtbx/twinning/__init__.py' adding 'mmtbx/twinning/probabalistic_detwinning.py' adding 'mmtbx/twinning/twin_f_model.py' adding 'mmtbx/utils/__init__.py' adding 'mmtbx/utils/fab_elbow_angle.py' adding 'mmtbx/utils/grid2d.py' adding 'mmtbx/utils/ntc.py' adding 'mmtbx/utils/rotatable_bonds.py' adding 'mmtbx/utils/tst_switch_rotamers.py' adding 'mmtbx/validation/__init__.py' adding 'mmtbx/validation/analyze_peptides.py' adding 'mmtbx/validation/barbed_wire_analysis.py' adding 'mmtbx/validation/cablam.py' adding 'mmtbx/validation/cbd_utils.py' adding 'mmtbx/validation/cbetadev.py' adding 'mmtbx/validation/chain_comparison.py' adding 'mmtbx/validation/clashscore.py' adding 'mmtbx/validation/clashscore2.py' adding 'mmtbx/validation/comparama.py' adding 'mmtbx/validation/comprehensive_residue.py' adding 'mmtbx/validation/convert_lists.py' adding 'mmtbx/validation/datasets.py' adding 'mmtbx/validation/ensembles.py' adding 'mmtbx/validation/experimental.py' adding 'mmtbx/validation/fav_lists.py' adding 'mmtbx/validation/graphics.py' adding 'mmtbx/validation/holton_geometry_validation.py' adding 'mmtbx/validation/ligand_interactions.py' adding 'mmtbx/validation/ligands.py' adding 'mmtbx/validation/mean_devs_PRO_phi_psi.py' adding 'mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py' adding 'mmtbx/validation/mean_devs_others_phi_psi.py' adding 'mmtbx/validation/model_properties.py' adding 'mmtbx/validation/mp_validate_bonds.py' adding 'mmtbx/validation/omegalyze.py' adding 'mmtbx/validation/phi_psi_2_data.py' adding 'mmtbx/validation/rama_z.py' adding 'mmtbx/validation/ramalyze.py' adding 'mmtbx/validation/restraints.py' adding 'mmtbx/validation/rna_validate.py' adding 'mmtbx/validation/rotalyze.py' adding 'mmtbx/validation/sequence.py' adding 'mmtbx/validation/undowser.py' adding 'mmtbx/validation/undowser2.py' adding 'mmtbx/validation/utils.py' adding 'mmtbx/validation/validate_ligands.py' adding 'mmtbx/validation/waters.py' adding 'mmtbx/validation/molprobity/__init__.py' adding 'mmtbx/validation/molprobity/kinemage_templates.py' adding 'mmtbx/validation/molprobity/mp_geo.py' adding 'mmtbx/validation/molprobity/percentile_clashscore.py' adding 'mmtbx/validation/molprobity/percentile_mpscore.py' adding 'mmtbx/validation/molprobity/probescore_ligand.py' adding 'mmtbx/validation/molprobity/table_from_json.py' adding 'mmtbx/validation/ramachandran/__init__.py' adding 'mmtbx/validation/ramachandran/convert_from_text.py' adding 'mmtbx/validation/regression/__init__.py' adding 'mmtbx/validation/regression/run_restraints.py' adding 'mmtbx/validation/regression/tst_barbed_wire_analysis.py' adding 'mmtbx/validation/regression/tst_cablam.py' adding 'mmtbx/validation/regression/tst_cablam_2.py' adding 'mmtbx/validation/regression/tst_cbetadev.py' adding 'mmtbx/validation/regression/tst_cbetadev_02.py' adding 'mmtbx/validation/regression/tst_chiral_validation.py' adding 'mmtbx/validation/regression/tst_clashscore.py' adding 'mmtbx/validation/regression/tst_clashscore_2.py' adding 'mmtbx/validation/regression/tst_do_flips_clashscore.py' adding 'mmtbx/validation/regression/tst_experimental.py' adding 'mmtbx/validation/regression/tst_find_region_max_value.py' adding 'mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py' adding 'mmtbx/validation/regression/tst_keep_hydrogens.py' adding 'mmtbx/validation/regression/tst_model_properties.py' adding 'mmtbx/validation/regression/tst_molprobity_1.py' adding 'mmtbx/validation/regression/tst_molprobity_2.py' adding 'mmtbx/validation/regression/tst_molprobity_3.py' adding 'mmtbx/validation/regression/tst_molprobity_4.py' adding 'mmtbx/validation/regression/tst_molprobity_5.py' adding 'mmtbx/validation/regression/tst_molprobity_arguments.py' adding 'mmtbx/validation/regression/tst_mp_geo.py' adding 'mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py' adding 'mmtbx/validation/regression/tst_mp_geo_endtoend.py' adding 'mmtbx/validation/regression/tst_mp_validate_bonds.py' adding 'mmtbx/validation/regression/tst_omegalyze.py' adding 'mmtbx/validation/regression/tst_probe2_asu_bond_proxies.py' adding 'mmtbx/validation/regression/tst_rama_z_01.py' adding 'mmtbx/validation/regression/tst_rama_z_02.py' adding 'mmtbx/validation/regression/tst_ramalyze.py' adding 'mmtbx/validation/regression/tst_ramalyze2.py' adding 'mmtbx/validation/regression/tst_ramalyze_rare.py' adding 'mmtbx/validation/regression/tst_restraints.py' adding 'mmtbx/validation/regression/tst_rna_validate.py' adding 'mmtbx/validation/regression/tst_rotalyze.py' adding 'mmtbx/validation/regression/tst_suitename.py' adding 'mmtbx/validation/regression/tst_symmetry_SS.py' adding 'mmtbx/validation/regression/tst_undowser.py' adding 'mmtbx/validation/regression/tst_undowser2.py' adding 'mmtbx/validation/regression/tst_utils.py' adding 'mmtbx/validation/regression/tst_waters.py' adding 'mmtbx/wwpdb/__init__.py' adding 'mmtbx/wwpdb/rcsb_entry_request.py' adding 'mmtbx/wwpdb/rcsb_web_services.py' adding 'mmtbx/wwpdb/tst_rcsb_entry_request.py' adding 'mmtbx/wwpdb/tst_rcsb_web_services.py' adding 'omptbx/__init__.py' adding 'omptbx/tst.py' adding 'qttbx/__init__.py' adding 'qttbx/phil.py' adding 'qttbx/qt.py' adding 'qttbx/run_tests.py' adding 'qttbx/examples/__init__.py' adding 'qttbx/examples/_helpers.py' adding 'qttbx/examples/data_manager_example.py' adding 'qttbx/examples/phil_widgets_example.py' adding 'qttbx/regression/__init__.py' adding 'qttbx/regression/tst_chat_agent_core.py' adding 'qttbx/regression/tst_chat_approval_coordinator.py' adding 'qttbx/regression/tst_chat_artifact_panel.py' adding 'qttbx/regression/tst_chat_auto_height.py' adding 'qttbx/regression/tst_chat_conversation_widgets.py' adding 'qttbx/regression/tst_chat_credentials_dialog.py' adding 'qttbx/regression/tst_chat_diagnostics.py' adding 'qttbx/regression/tst_chat_eliding.py' adding 'qttbx/regression/tst_chat_image.py' adding 'qttbx/regression/tst_chat_logging_setup.py' adding 'qttbx/regression/tst_chat_markdown.py' adding 'qttbx/regression/tst_chat_mcp_client.py' adding 'qttbx/regression/tst_chat_message_bubble.py' adding 'qttbx/regression/tst_chat_message_input.py' adding 'qttbx/regression/tst_chat_overlay_anchor.py' adding 'qttbx/regression/tst_chat_profile.py' adding 'qttbx/regression/tst_chat_question_card.py' adding 'qttbx/regression/tst_chat_runner.py' adding 'qttbx/regression/tst_chat_search.py' adding 'qttbx/regression/tst_chat_session.py' adding 'qttbx/regression/tst_chat_skills.py' adding 'qttbx/regression/tst_chat_storage.py' adding 'qttbx/regression/tst_chat_storage_session.py' adding 'qttbx/regression/tst_chat_subagent.py' adding 'qttbx/regression/tst_chat_subagent_view.py' adding 'qttbx/regression/tst_chat_tool_approval.py' adding 'qttbx/regression/tst_chat_tools.py' adding 'qttbx/regression/tst_chat_window_chrome.py' adding 'qttbx/regression/tst_data_manager_widget.py' adding 'qttbx/regression/tst_phil_widgets.py' adding 'qttbx/regression/tst_run_tests_manifest.py' adding 'qttbx/viewers/__init__.py' adding 'qttbx/viewers/chimerax.py' adding 'qttbx/widgets/__init__.py' adding 'qttbx/widgets/font_init.py' adding 'qttbx/widgets/chat/__init__.py' adding 'qttbx/widgets/chat/artifact.py' adding 'qttbx/widgets/chat/artifact_panel.py' adding 'qttbx/widgets/chat/auto_height.py' adding 'qttbx/widgets/chat/chat_top_bar.py' adding 'qttbx/widgets/chat/conversation_list.py' adding 'qttbx/widgets/chat/conversation_search.py' adding 'qttbx/widgets/chat/conversation_view.py' adding 'qttbx/widgets/chat/credentials_dialog.py' adding 'qttbx/widgets/chat/diagnostics.py' adding 'qttbx/widgets/chat/edge_rail.py' adding 'qttbx/widgets/chat/eliding.py' adding 'qttbx/widgets/chat/image_cache.py' adding 'qttbx/widgets/chat/image_lightbox.py' adding 'qttbx/widgets/chat/logging_setup.py' adding 'qttbx/widgets/chat/markdown_export.py' adding 'qttbx/widgets/chat/markdown_view.py' adding 'qttbx/widgets/chat/message_bubble.py' adding 'qttbx/widgets/chat/message_input.py' adding 'qttbx/widgets/chat/overlay_anchor.py' adding 'qttbx/widgets/chat/question_card.py' adding 'qttbx/widgets/chat/search_bar.py' adding 'qttbx/widgets/chat/tool_approval.py' adding 'qttbx/widgets/chat/tool_call_disclosure.py' adding 'qttbx/widgets/chat/agent/__init__.py' adding 'qttbx/widgets/chat/agent/approval.py' adding 'qttbx/widgets/chat/agent/base.py' adding 'qttbx/widgets/chat/agent/conversation.py' adding 'qttbx/widgets/chat/agent/errors.py' adding 'qttbx/widgets/chat/agent/events.py' adding 'qttbx/widgets/chat/agent/mcp_client.py' adding 'qttbx/widgets/chat/agent/paths.py' adding 'qttbx/widgets/chat/agent/profile.py' adding 'qttbx/widgets/chat/agent/runner.py' adding 'qttbx/widgets/chat/agent/session.py' adding 'qttbx/widgets/chat/agent/skills.py' adding 'qttbx/widgets/chat/agent/storage.py' adding 'qttbx/widgets/chat/agent/subagent.py' adding 'qttbx/widgets/chat/agent/tools.py' adding 'qttbx/widgets/data_manager/__init__.py' adding 'qttbx/widgets/data_manager/_binding_popup.py' adding 'qttbx/widgets/data_manager/_delegate.py' adding 'qttbx/widgets/data_manager/_phil_helpers.py' adding 'qttbx/widgets/data_manager/_table_model.py' adding 'qttbx/widgets/data_manager/widget.py' adding 'qttbx/widgets/phil/__init__.py' adding 'qttbx/widgets/phil/_colors.py' adding 'qttbx/widgets/phil/atom_selection.py' adding 'qttbx/widgets/phil/bool_widget.py' adding 'qttbx/widgets/phil/choice_widget.py' adding 'qttbx/widgets/phil/delegate.py' adding 'qttbx/widgets/phil/float_widget.py' adding 'qttbx/widgets/phil/floats_widget.py' adding 'qttbx/widgets/phil/int_widget.py' adding 'qttbx/widgets/phil/ints_widget.py' adding 'qttbx/widgets/phil/key_widget.py' adding 'qttbx/widgets/phil/multiple.py' adding 'qttbx/widgets/phil/path_widget.py' adding 'qttbx/widgets/phil/qstr_widget.py' adding 'qttbx/widgets/phil/space_group.py' adding 'qttbx/widgets/phil/str_widget.py' adding 'qttbx/widgets/phil/strings_widget.py' adding 'qttbx/widgets/phil/text_base.py' adding 'qttbx/widgets/phil/unit_cell.py' adding 'qttbx/widgets/phil/words_widget.py' adding 'rstbx/__init__.py' adding 'rstbx/run_tests.py' adding 'rstbx/utils.py' adding 'rstbx/apps/__init__.py' adding 'rstbx/apps/dual_resolution_helpers.py' adding 'rstbx/apps/slip_helpers.py' adding 'rstbx/apps/spot_markup.py' adding 'rstbx/apps/stills/__init__.py' adding 'rstbx/apps/stills/deltapsi_refinement_preceding_integration.py' adding 'rstbx/apps/stills/dials_refinement_preceding_integration.py' adding 'rstbx/apps/stills/simple_integration.py' adding 'rstbx/apps/stills/stills_integration.py' adding 'rstbx/apps/stills/util.py' adding 'rstbx/array_family/__init__.py' adding 'rstbx/array_family/flex.py' adding 'rstbx/bandpass/__init__.py' adding 'rstbx/bandpass/simulated_annealing.py' adding 'rstbx/bpcx/__init__.py' adding 'rstbx/bpcx/compare_mosflm_xds.py' adding 'rstbx/bpcx/ersatz_misset.py' adding 'rstbx/bpcx/uc1_2.py' adding 'rstbx/bpcx/uc1_2_positions.py' adding 'rstbx/bpcx/uc1_2_positions_idx.py' adding 'rstbx/bpcx/uc1_2_validate.py' adding 'rstbx/bpcx/uc1_2a.py' adding 'rstbx/bpcx/detector_model/__init__.py' adding 'rstbx/bpcx/detector_model/detector.py' adding 'rstbx/bpcx/detector_model/instrument_specifics.py' adding 'rstbx/bpcx/detector_model/tst_detector_model.py' adding 'rstbx/cftbx/__init__.py' adding 'rstbx/cftbx/coordinate_frame_converter.py' adding 'rstbx/cftbx/coordinate_frame_helpers.py' adding 'rstbx/cftbx/tst_coordinate_frame_converter.py' adding 'rstbx/command_line/__init__.py' adding 'rstbx/command_line/example_viewer.py' adding 'rstbx/command_line/index.py' adding 'rstbx/command_line/simage.create.py' adding 'rstbx/command_line/simage.explore_completeness.py' adding 'rstbx/command_line/simage.solver.py' adding 'rstbx/command_line/simage.wx_display.py' adding 'rstbx/command_line/slip_viewer.py' adding 'rstbx/command_line/viewer.py' adding 'rstbx/detectors/__init__.py' adding 'rstbx/detectors/silicon.py' adding 'rstbx/dials_core/__init__.py' adding 'rstbx/dials_core/integration_core.py' adding 'rstbx/diffraction/__init__.py' adding 'rstbx/diffraction/tst_ewald_sphere.py' adding 'rstbx/diffraction/tst_partial_derivatives.py' adding 'rstbx/diffraction/tst_predict.py' adding 'rstbx/diffraction/fastbragg/__init__.py' adding 'rstbx/diffraction/fastbragg/tst_bragg_minimal.py' adding 'rstbx/diffraction/fastbragg/tst_utils_clustering.py' adding 'rstbx/dps_core/__init__.py' adding 'rstbx/dps_core/basis_choice.py' adding 'rstbx/dps_core/cell_assessment.py' adding 'rstbx/dps_core/constrainment.py' adding 'rstbx/dps_core/lepage.py' adding 'rstbx/dps_core/sampling.py' adding 'rstbx/dps_core/tst_iotbx_converter.py' adding 'rstbx/dps_core/zuoreduction.py' adding 'rstbx/indexing/__init__.py' adding 'rstbx/indexing/do_index.py' adding 'rstbx/indexing/tst_auto_monoscan.py' adding 'rstbx/indexing/tst_dataset1.py' adding 'rstbx/indexing_api/__init__.py' adding 'rstbx/indexing_api/basis_choice.py' adding 'rstbx/indexing_api/force_cell.py' adding 'rstbx/indexing_api/lattice.py' adding 'rstbx/indexing_api/nearest_neighbor.py' adding 'rstbx/indexing_api/outlier_detection.py' adding 'rstbx/indexing_api/outlier_procedure.py' adding 'rstbx/indexing_api/sampling.py' adding 'rstbx/indexing_api/test_dps.py' adding 'rstbx/indexing_api/tools.py' adding 'rstbx/new_horizons/__init__.py' adding 'rstbx/new_horizons/index.py' adding 'rstbx/new_horizons/oscillation_shots.py' adding 'rstbx/new_horizons/pixel_spread.py' adding 'rstbx/new_horizons/speckfinder.py' adding 'rstbx/new_horizons/spot_shape.py' adding 'rstbx/new_horizons/stats_index.py' adding 'rstbx/outlier_spots/__init__.py' adding 'rstbx/outlier_spots/fit_distribution.py' adding 'rstbx/phil/__init__.py' adding 'rstbx/phil/phil_preferences.py' adding 'rstbx/phil/preferences.py' adding 'rstbx/phil/scope.py' adding 'rstbx/simage/__init__.py' adding 'rstbx/simage/create.py' adding 'rstbx/simage/explore_completeness.py' adding 'rstbx/simage/integrate_crude.py' adding 'rstbx/simage/refine_uc_cr.py' adding 'rstbx/simage/run_labelit_index.py' adding 'rstbx/simage/run_spotfinder.py' adding 'rstbx/simage/solver.py' adding 'rstbx/simage/tst.py' adding 'rstbx/simage/wx_display.py' adding 'rstbx/simulation/__init__.py' adding 'rstbx/simulation/constants.py' adding 'rstbx/simulation/sim_pdf.py' adding 'rstbx/simulation/sim_utils.py' adding 'rstbx/simulation/tst_xfel1_simple.py' adding 'rstbx/slip_viewer/__init__.py' adding 'rstbx/slip_viewer/calibration_frame.py' adding 'rstbx/slip_viewer/example_frame_plugin_hidden.py' adding 'rstbx/slip_viewer/frame.py' adding 'rstbx/slip_viewer/pyslip.py' adding 'rstbx/slip_viewer/ring_frame.py' adding 'rstbx/slip_viewer/score_frame.py' adding 'rstbx/slip_viewer/slip_display.py' adding 'rstbx/slip_viewer/slip_viewer_image_factory.py' adding 'rstbx/slip_viewer/tile_generation.py' adding 'rstbx/slip_viewer/uc_frame.py' adding 'rstbx/sublattice_support/__init__.py' adding 'rstbx/sublattice_support/change_basis.py' adding 'rstbx/sublattice_support/tst_sublattice.py' adding 'rstbx/symmetry/__init__.py' adding 'rstbx/symmetry/sgtbx_adaptor.py' adding 'rstbx/symmetry/subgroup.py' adding 'rstbx/symmetry/constraints/__init__.py' adding 'rstbx/symmetry/constraints/g_gradients.py' adding 'rstbx/symmetry/constraints/parameter_reduction.py' adding 'rstbx/viewer/__init__.py' adding 'rstbx/viewer/calibration.py' adding 'rstbx/viewer/calibration_frame.py' adding 'rstbx/viewer/controls.py' adding 'rstbx/viewer/dataset.py' adding 'rstbx/viewer/display.py' adding 'rstbx/viewer/drivers.py' adding 'rstbx/viewer/frame.py' adding 'rstbx/viewer/indexing.py' adding 'rstbx/viewer/integration.py' adding 'rstbx/viewer/pixels3d.py' adding 'rstbx/viewer/processing.py' adding 'rstbx/viewer/results_base.py' adding 'rstbx/viewer/spotfinder_frame.py' adding 'rstbx/viewer/spotfinder_wrap.py' adding 'rstbx/viewer/tst.py' adding 'scitbx/__init__.py' adding 'scitbx/cross_entropy.py' adding 'scitbx/cubicle_neighbors.py' adding 'scitbx/differential_evolution.py' adding 'scitbx/direct_search_simulated_annealing.py' adding 'scitbx/fftpack.py' adding 'scitbx/genetic_algorithm_with_mp.py' adding 'scitbx/golden_section_search.py' adding 'scitbx/lbfgsb.py' adding 'scitbx/libtbx_refresh.py' adding 'scitbx/minimizers.py' adding 'scitbx/minpack.py' adding 'scitbx/r3_utils.py' adding 'scitbx/regular_grid_on_unit_sphere.py' adding 'scitbx/restraints.py' adding 'scitbx/run_tests.py' adding 'scitbx/simplex.py' adding 'scitbx/smoothing.py' adding 'scitbx/array_family/__init__.py' adding 'scitbx/array_family/flex.py' adding 'scitbx/array_family/shared.py' adding 'scitbx/array_family/accessors/__init__.py' adding 'scitbx/array_family/boost_python/__init__.py' adding 'scitbx/array_family/boost_python/regression_test.py' adding 'scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py' adding 'scitbx/array_family/boost_python/tst_flex.py' adding 'scitbx/array_family/boost_python/tst_flex_argument_passing.py' adding 'scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py' adding 'scitbx/array_family/boost_python/tst_numpy_bridge.py' adding 'scitbx/array_family/boost_python/tst_numpy_scalar_conversions.py' adding 'scitbx/array_family/boost_python/tst_shared.py' adding 'scitbx/array_family/boost_python/tst_smart_selection.py' adding 'scitbx/array_family/detail/__init__.py' adding 'scitbx/boost_python/__init__.py' adding 'scitbx/command_line/__init__.py' adding 'scitbx/command_line/apply_tapenade_hints.py' adding 'scitbx/command_line/generate_error_h.py' adding 'scitbx/command_line/histogram.py' adding 'scitbx/command_line/show_exp_times.py' adding 'scitbx/command_line/show_sizes.py' adding 'scitbx/command_line/unicode_examples.py' adding 'scitbx/dtmin/__init__.py' adding 'scitbx/dtmin/auxiliary.py' adding 'scitbx/dtmin/bounds.py' adding 'scitbx/dtmin/compulsory.py' adding 'scitbx/dtmin/min_logging.py' adding 'scitbx/dtmin/minimizer.py' adding 'scitbx/dtmin/optional.py' adding 'scitbx/dtmin/realsymmetricpseudoinverse.py' adding 'scitbx/dtmin/refinebase.py' adding 'scitbx/dtmin/reparams.py' adding 'scitbx/dtmin/twisted_gaussian.py' adding 'scitbx/dtmin/regression/__init__.py' adding 'scitbx/dtmin/regression/tst_dtmin_basic.py' adding 'scitbx/dtmin/regression/tst_dtmin_booth.py' adding 'scitbx/dtmin/regression/tst_dtmin_twisted.py' adding 'scitbx/error/__init__.py' adding 'scitbx/error/tst_error.py' adding 'scitbx/examples/__init__.py' adding 'scitbx/examples/bootstrap.py' adding 'scitbx/examples/chebyshev_lsq_example.py' adding 'scitbx/examples/flex_array_loops.py' adding 'scitbx/examples/flex_grid.py' adding 'scitbx/examples/functions.py' adding 'scitbx/examples/immoptibox_ports.py' adding 'scitbx/examples/integrating_a_weighted_sinc_function.py' adding 'scitbx/examples/lbfgs_linear_least_squares_fit.py' adding 'scitbx/examples/lbfgs_recipe.py' adding 'scitbx/examples/minimizer_comparisons.py' adding 'scitbx/examples/principal_axes_of_inertia.py' adding 'scitbx/examples/rigid_body_refinement_core.py' adding 'scitbx/examples/bevington/__init__.py' adding 'scitbx/examples/bevington/silver.py' adding 'scitbx/glmtbx/__init__.py' adding 'scitbx/glmtbx/boost_python/__init__.py' adding 'scitbx/glmtbx/tests/__init__.py' adding 'scitbx/glmtbx/tests/tst.py' adding 'scitbx/graph/__init__.py' adding 'scitbx/graph/rigidity.py' adding 'scitbx/graph/rigidity_matrix_symbolic.py' adding 'scitbx/graph/tardy_tree.py' adding 'scitbx/graph/test_cases_tardy_pdb.py' adding 'scitbx/graph/tst_rigidity.py' adding 'scitbx/graph/tst_tardy_tree.py' adding 'scitbx/graph/tst_tardy_tree_find_paths.py' adding 'scitbx/graph/tst_utils.py' adding 'scitbx/graph/utils.py' adding 'scitbx/graphics_utils/__init__.py' adding 'scitbx/graphics_utils/tst.py' adding 'scitbx/iso_surface/__init__.py' adding 'scitbx/iso_surface/tst_iso_surface.py' adding 'scitbx/lbfgs/__init__.py' adding 'scitbx/lbfgs/tst_curvatures.py' adding 'scitbx/lbfgs/tst_ext.py' adding 'scitbx/lbfgs/tst_func_free_line_search.py' adding 'scitbx/lbfgs/tst_lbfgs_fem.py' adding 'scitbx/lbfgs/tst_mpi_split_evaluator.py' adding 'scitbx/lbfgs/dev/__init__.py' adding 'scitbx/lbfgs/dev/run.py' adding 'scitbx/lbfgs/dev/twisted_gaussian.py' adding 'scitbx/linalg/__init__.py' adding 'scitbx/linalg/eigensystem.py' adding 'scitbx/linalg/ext.py' adding 'scitbx/linalg/householder.py' adding 'scitbx/linalg/svd.py' adding 'scitbx/linalg/boost_python/__init__.py' adding 'scitbx/linalg/tests/__init__.py' adding 'scitbx/linalg/tests/tst_cholesky.py' adding 'scitbx/linalg/tests/tst_eigensystem.py' adding 'scitbx/linalg/tests/tst_lapack_dsyev.py' adding 'scitbx/linalg/tests/tst_lapack_svd.py' adding 'scitbx/linalg/tests/tst_matrix.py' adding 'scitbx/linalg/tests/tst_svd.py' adding 'scitbx/line_search/__init__.py' adding 'scitbx/lstbx/__init__.py' adding 'scitbx/lstbx/normal_eqns.py' adding 'scitbx/lstbx/normal_eqns_solving.py' adding 'scitbx/lstbx/benchmarks/__init__.py' adding 'scitbx/lstbx/boost_python/__init__.py' adding 'scitbx/lstbx/tests/__init__.py' adding 'scitbx/lstbx/tests/test_problems.py' adding 'scitbx/lstbx/tests/tst_normal_equations.py' adding 'scitbx/math/__init__.py' adding 'scitbx/math/besselk.py' adding 'scitbx/math/breakpoint.py' adding 'scitbx/math/chebyshev_lsq_fit.py' adding 'scitbx/math/clustering.py' adding 'scitbx/math/cubic_spline.py' adding 'scitbx/math/curve_fitting.py' adding 'scitbx/math/des_3_100_13.py' adding 'scitbx/math/des_3_240_21.py' adding 'scitbx/math/distributions.py' adding 'scitbx/math/euler_angles.py' adding 'scitbx/math/ext.py' adding 'scitbx/math/farey.py' adding 'scitbx/math/fit_peak.py' adding 'scitbx/math/fit_quadratic_function.py' adding 'scitbx/math/fliege_mayer_400.py' adding 'scitbx/math/fliege_mayer_900.py' adding 'scitbx/math/fliege_mayer_900_ylm.py' adding 'scitbx/math/gaussian.py' adding 'scitbx/math/gaussian_fit.py' adding 'scitbx/math/gumbel.py' adding 'scitbx/math/incremental_SO3_sampling.py' adding 'scitbx/math/lefebvre.py' adding 'scitbx/math/minimum_covering_ellipsoid.py' adding 'scitbx/math/multiple_superposition.py' adding 'scitbx/math/periodogram.py' adding 'scitbx/math/scale_curves.py' adding 'scitbx/math/sieve_of_eratosthenes.py' adding 'scitbx/math/so3_lie_algebra.py' adding 'scitbx/math/spe.py' adding 'scitbx/math/sphere_sphere_intersection.py' adding 'scitbx/math/superpose.py' adding 'scitbx/math/tst_2d_zernike.py' adding 'scitbx/math/tst_bessel_zeros.py' adding 'scitbx/math/tst_multivariate_moments.py' adding 'scitbx/math/tst_so3_lie_algebra.py' adding 'scitbx/math/tst_undirected_graph.py' adding 'scitbx/math/tst_zernike.py' adding 'scitbx/math/tst_zernike_mom.py' adding 'scitbx/math/undirected_graph.py' adding 'scitbx/math/zernike_align_fft.py' adding 'scitbx/math/boost_python/__init__.py' adding 'scitbx/math/dev/__init__.py' adding 'scitbx/math/erf/__init__.py' adding 'scitbx/math/tests/__init__.py' adding 'scitbx/math/tests/tst_angle_derivative.py' adding 'scitbx/math/tests/tst_bessel.py' adding 'scitbx/math/tests/tst_clustering.py' adding 'scitbx/math/tests/tst_cubic_equation.py' adding 'scitbx/math/tests/tst_curve_fitting.py' adding 'scitbx/math/tests/tst_dmatrix.py' adding 'scitbx/math/tests/tst_error_propagation_matrix_inverse.py' adding 'scitbx/math/tests/tst_euler_angles.py' adding 'scitbx/math/tests/tst_exp_functions.py' adding 'scitbx/math/tests/tst_fit_peak.py' adding 'scitbx/math/tests/tst_fit_quadratic_function.py' adding 'scitbx/math/tests/tst_g_function.py' adding 'scitbx/math/tests/tst_gaussian.py' adding 'scitbx/math/tests/tst_gaussian_fit_1d_analytical.py' adding 'scitbx/math/tests/tst_gcd.py' adding 'scitbx/math/tests/tst_halton.py' adding 'scitbx/math/tests/tst_line_search.py' adding 'scitbx/math/tests/tst_math.py' adding 'scitbx/math/tests/tst_minimum_covering_ellipsoid.py' adding 'scitbx/math/tests/tst_orthonormal_basis.py' adding 'scitbx/math/tests/tst_periodogram.py' adding 'scitbx/math/tests/tst_quadrature.py' adding 'scitbx/math/tests/tst_r3_rotation.py' adding 'scitbx/math/tests/tst_resample.py' adding 'scitbx/math/tests/tst_similarity_indices.py' adding 'scitbx/math/tests/tst_superpose.py' adding 'scitbx/math/tests/tst_tetrahedron.py' adding 'scitbx/math/tests/tst_uniform_rotation_matrix.py' adding 'scitbx/math/tests/tst_weighted_correlation.py' adding 'scitbx/matrix/__init__.py' adding 'scitbx/matrix/row_echelon.py' adding 'scitbx/matrix/tests/__init__.py' adding 'scitbx/matrix/tests/tst_householder.py' adding 'scitbx/matrix/tests/tst_row_echelon.py' adding 'scitbx/misc/__init__.py' adding 'scitbx/python_utils/__init__.py' adding 'scitbx/python_utils/command_line.py' adding 'scitbx/python_utils/dicts.py' adding 'scitbx/python_utils/graph_tools.py' adding 'scitbx/python_utils/misc.py' adding 'scitbx/python_utils/random_transform.py' adding 'scitbx/python_utils/robust_statistics.py' adding 'scitbx/python_utils/signal_utils.py' adding 'scitbx/python_utils/tst_graph.py' adding 'scitbx/python_utils/tst_random_transform.py' adding 'scitbx/python_utils/tst_robust.py' adding 'scitbx/random/__init__.py' adding 'scitbx/random/boost_python/__init__.py' adding 'scitbx/random/tests/__init__.py' adding 'scitbx/random/tests/tst_random.py' adding 'scitbx/rigid_body/__init__.py' adding 'scitbx/rigid_body/tst.py' adding 'scitbx/rigid_body/essence/__init__.py' adding 'scitbx/rigid_body/essence/body_lib.py' adding 'scitbx/rigid_body/essence/featherstone.py' adding 'scitbx/rigid_body/essence/joint_lib.py' adding 'scitbx/rigid_body/essence/make_bundles.py' adding 'scitbx/rigid_body/essence/spatial_lib.py' adding 'scitbx/rigid_body/essence/tardy.py' adding 'scitbx/rigid_body/essence/tst_basic.py' adding 'scitbx/rigid_body/essence/tst_energy_plots.py' adding 'scitbx/rigid_body/essence/tst_tardy.py' adding 'scitbx/rigid_body/essence/wx_tardy.py' adding 'scitbx/rigid_body/proto/__init__.py' adding 'scitbx/rigid_body/proto/featherstone.py' adding 'scitbx/rigid_body/proto/free_motion_reference_impl.py' adding 'scitbx/rigid_body/proto/joint_lib.py' adding 'scitbx/rigid_body/proto/test_simulation.py' adding 'scitbx/rigid_body/proto/test_utils.py' adding 'scitbx/rigid_body/proto/tst_featherstone.py' adding 'scitbx/rigid_body/proto/tst_free_motion.py' adding 'scitbx/rigid_body/proto/tst_free_motion_hard.py' adding 'scitbx/rigid_body/proto/tst_joint_lib.py' adding 'scitbx/rigid_body/proto/tst_molecules.py' adding 'scitbx/rigid_body/proto/tst_singular.py' adding 'scitbx/rigid_body/proto/tst_spherical_refinement.py' adding 'scitbx/rigid_body/proto/utils.py' adding 'scitbx/rigid_body/proto/wx_free_motion.py' adding 'scitbx/rigid_body/proto/wx_joint_lib.py' adding 'scitbx/rigid_body/proto/wx_molecules.py' adding 'scitbx/serialization/__init__.py' adding 'scitbx/slatec/__init__.py' adding 'scitbx/source_generators/__init__.py' adding 'scitbx/source_generators/flex_fwd_h.py' adding 'scitbx/source_generators/lbfgs_fem.py' adding 'scitbx/source_generators/utils.py' adding 'scitbx/source_generators/array_family/__init__.py' adding 'scitbx/source_generators/array_family/generate_algebras.py' adding 'scitbx/source_generators/array_family/generate_all.py' adding 'scitbx/source_generators/array_family/generate_apply.py' adding 'scitbx/source_generators/array_family/generate_operator_functors.py' adding 'scitbx/source_generators/array_family/generate_operator_traits_builtin.py' adding 'scitbx/source_generators/array_family/generate_reductions.py' adding 'scitbx/source_generators/array_family/generate_std_imports.py' adding 'scitbx/source_generators/array_family/operator_functor_info.py' adding 'scitbx/sparse/__init__.py' adding 'scitbx/sparse/boost_python/__init__.py' adding 'scitbx/sparse/tests/__init__.py' adding 'scitbx/sparse/tests/tst_lu_factorization.py' adding 'scitbx/sparse/tests/tst_sparse.py' adding 'scitbx/stdlib/__init__.py' adding 'scitbx/stl/__init__.py' adding 'scitbx/stl/map.py' adding 'scitbx/stl/set.py' adding 'scitbx/stl/tst_map.py' adding 'scitbx/stl/tst_set.py' adding 'scitbx/stl/tst_vector.py' adding 'scitbx/stl/vector.py' adding 'scitbx/suffixtree/__init__.py' adding 'scitbx/suffixtree/single.py' adding 'scitbx/suffixtree/boost_python/__init__.py' adding 'scitbx/suffixtree/test/__init__.py' adding 'scitbx/suffixtree/test/tst_single.py' adding 'scitbx/tests/__init__.py' adding 'scitbx/tests/differential_evolution.py' adding 'scitbx/tests/direct_search_simulated_annealing.py' adding 'scitbx/tests/golden_section_search.py' adding 'scitbx/tests/simplex.py' adding 'scitbx/tests/tst_basic.py' adding 'scitbx/tests/tst_cubicle_neighbors.py' adding 'scitbx/tests/tst_genetic_algorithm_with_mp.py' adding 'scitbx/tests/tst_minimizer_lbfgs_general.py' adding 'scitbx/tests/tst_r3_utils.py' adding 'scitbx/tests/tst_regular_grid_on_unit_sphere.py' adding 'scitbx/tests/tst_smoothing.py' adding 'scitbx/wigner/__init__.py' adding 'scitbx/wigner/tst_wigner3j.py' adding 'serialtbx/__init__.py' adding 'serialtbx/detector/__init__.py' adding 'serialtbx/detector/cspad.py' adding 'serialtbx/detector/jungfrau.py' adding 'serialtbx/detector/rayonix.py' adding 'serialtbx/detector/xtc.py' adding 'serialtbx/detector/legacy_metrology/__init__.py' adding 'serialtbx/detector/legacy_metrology/cspad_detector.py' adding 'serialtbx/detector/legacy_metrology/generic_detector.py' adding 'serialtbx/detector/legacy_metrology/metrology.py' adding 'serialtbx/mono_simulation/__init__.py' adding 'serialtbx/mono_simulation/max_like.py' adding 'serialtbx/mono_simulation/util.py' adding 'serialtbx/util/__init__.py' adding 'serialtbx/util/construct_frame.py' adding 'serialtbx/util/energy_scan_notch_finder.py' adding 'serialtbx/util/time.py' adding 'simtbx/__init__.py' adding 'simtbx/run_tests.py' adding 'simtbx/diffBragg/__init__.py' adding 'simtbx/diffBragg/attr_list.py' adding 'simtbx/diffBragg/device.py' adding 'simtbx/diffBragg/ensemble_refine_launcher.py' adding 'simtbx/diffBragg/hopper_ensemble_utils.py' adding 'simtbx/diffBragg/hopper_io.py' adding 'simtbx/diffBragg/hopper_utils.py' adding 'simtbx/diffBragg/mpi_logger.py' adding 'simtbx/diffBragg/parameter_errors.py' adding 'simtbx/diffBragg/phil.py' adding 'simtbx/diffBragg/prep_stage2_input.py' adding 'simtbx/diffBragg/psf.py' adding 'simtbx/diffBragg/stage_two_utils.py' adding 'simtbx/diffBragg/utils.py' adding 'simtbx/diffBragg/refiners/__init__.py' adding 'simtbx/diffBragg/refiners/base_refiner.py' adding 'simtbx/diffBragg/refiners/geometry.py' adding 'simtbx/diffBragg/refiners/parameters.py' adding 'simtbx/diffBragg/refiners/stage_two_refiner.py' adding 'simtbx/diffBragg/refiners/crystal_systems/__init__.py' adding 'simtbx/diffBragg/refiners/crystal_systems/hexagonal.py' adding 'simtbx/diffBragg/refiners/crystal_systems/manager.py' adding 'simtbx/diffBragg/refiners/crystal_systems/monoclinic.py' adding 'simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py' adding 'simtbx/diffBragg/refiners/crystal_systems/tetragonal.py' adding 'simtbx/gpu/__init__.py' adding 'simtbx/gpu/tst_exafel_api.py' adding 'simtbx/gpu/tst_gpu_multisource_background.py' adding 'simtbx/gpu/tst_shoeboxes.py' adding 'simtbx/kokkos/__init__.py' adding 'simtbx/kokkos/tst_kokkos_lib.py' adding 'simtbx/modeling/FormatHDF5AttributeGeometry.py' adding 'simtbx/modeling/__init__.py' adding 'simtbx/modeling/forward_models.py' adding 'simtbx/modeling/predictions.py' adding 'simtbx/nanoBragg/__init__.py' adding 'simtbx/nanoBragg/anisotropic_mosaicity.py' adding 'simtbx/nanoBragg/nanoBragg_beam.py' adding 'simtbx/nanoBragg/nanoBragg_crystal.py' adding 'simtbx/nanoBragg/nanoBragg_gui_dialogs.py' adding 'simtbx/nanoBragg/nanoBragg_gui_frames.py' adding 'simtbx/nanoBragg/nanoBragg_gui_init.py' adding 'simtbx/nanoBragg/nanoBragg_input.py' adding 'simtbx/nanoBragg/nanoBragg_threads.py' adding 'simtbx/nanoBragg/sim_data.py' adding 'simtbx/nanoBragg/tst_anisotropic_mosaicity.py' adding 'simtbx/nanoBragg/tst_gauss_argchk.py' adding 'simtbx/nanoBragg/tst_gaussian_mosaicity.py' adding 'simtbx/nanoBragg/tst_gaussian_mosaicity2.py' adding 'simtbx/nanoBragg/tst_multisource_background.py' adding 'simtbx/nanoBragg/tst_nanoBragg_basic.py' adding 'simtbx/nanoBragg/tst_nanoBragg_cbf_write.py' adding 'simtbx/nanoBragg/tst_nanoBragg_minimal.py' adding 'simtbx/nanoBragg/tst_nanoBragg_mosaic.py' adding 'simtbx/nanoBragg/tst_nanoBragg_multipanel.py' adding 'simtbx/nanoBragg/tst_nanoBragg_pilatus.py' adding 'simtbx/nanoBragg/utils.py' adding 'simtbx/pixel/__init__.py' adding 'smtbx/__init__.py' adding 'smtbx/development.py' adding 'smtbx/libtbx_refresh.py' adding 'smtbx/run_tests.py' adding 'smtbx/utils.py' adding 'smtbx/ab_initio/__init__.py' adding 'smtbx/ab_initio/charge_flipping.py' adding 'smtbx/ab_initio/tests/__init__.py' adding 'smtbx/ab_initio/tests/tst_ab_initio_ext.py' adding 'smtbx/ab_initio/tests/tst_charge_flipping.py' adding 'smtbx/absolute_structure/__init__.py' adding 'smtbx/array_family/__init__.py' adding 'smtbx/command_line/__init__.py' adding 'smtbx/command_line/absolute_structure.py' adding 'smtbx/command_line/anom_refine.py' adding 'smtbx/command_line/benchmark_refinement.py' adding 'smtbx/command_line/masks.py' adding 'smtbx/command_line/refine.py' adding 'smtbx/masks/__init__.py' adding 'smtbx/refinement/__init__.py' adding 'smtbx/refinement/least_squares.py' adding 'smtbx/refinement/weighting_schemes.py' adding 'smtbx/refinement/constraints/__init__.py' adding 'smtbx/refinement/constraints/adp.py' adding 'smtbx/refinement/constraints/all.py' adding 'smtbx/refinement/constraints/fpfdp.py' adding 'smtbx/refinement/constraints/occupancy.py' adding 'smtbx/refinement/constraints/rigid.py' adding 'smtbx/refinement/constraints/site.py' adding 'smtbx/refinement/constraints/geometrical/__init__.py' adding 'smtbx/refinement/constraints/geometrical/all.py' adding 'smtbx/refinement/constraints/geometrical/hydrogens.py' adding 'smtbx/refinement/constraints/tests/__init__.py' adding 'smtbx/refinement/constraints/tests/tst_constrained_structure.py' adding 'smtbx/refinement/constraints/tests/tst_direction.py' adding 'smtbx/refinement/constraints/tests/tst_disorder.py' adding 'smtbx/refinement/constraints/tests/tst_lbfgs.py' adding 'smtbx/refinement/constraints/tests/tst_occupancies.py' adding 'smtbx/refinement/constraints/tests/tst_reparametrisation.py' adding 'smtbx/refinement/constraints/tests/tst_rigid.py' adding 'smtbx/refinement/constraints/tests/tst_same_group.py' adding 'smtbx/refinement/restraints/__init__.py' adding 'smtbx/refinement/restraints/adp_restraints.py' adding 'smtbx/refinement/restraints/origin_fixing_restraints.py' adding 'smtbx/regression/__init__.py' adding 'smtbx/regression/tst_commandline_anomrefine.py' adding 'smtbx/regression/tst_commandline_refine.py' adding 'smtbx/regression/test_data/__init__.py' adding 'smtbx/source_generators/__init__.py' adding 'smtbx/source_generators/flex_fwd_h.py' adding 'smtbx/stl/__init__.py' adding 'smtbx/stl/map.py' adding 'smtbx/structure_factors/__init__.py' adding 'smtbx/structure_factors/direct/__init__.py' adding 'spotfinder/__init__.py' adding 'spotfinder/exception.py' adding 'spotfinder/run_tests.py' adding 'spotfinder/applications/__init__.py' adding 'spotfinder/applications/image_viewer.py' adding 'spotfinder/applications/practical_heuristics.py' adding 'spotfinder/applications/signal_strength.py' adding 'spotfinder/applications/stats_distl.py' adding 'spotfinder/applications/wrappers.py' adding 'spotfinder/applications/heuristic_tbx/__init__.py' adding 'spotfinder/applications/heuristic_tbx/ice2.py' adding 'spotfinder/applications/heuristic_tbx/ice_nztt.py' adding 'spotfinder/applications/heuristic_tbx/method2_resolution.py' adding 'spotfinder/applications/heuristic_tbx/spotreporter.py' adding 'spotfinder/applications/xfel/__init__.py' adding 'spotfinder/applications/xfel/correction_vector_plot.py' adding 'spotfinder/applications/xfel/cxi_phil.py' adding 'spotfinder/applications/xfel/cxi_run3.py' adding 'spotfinder/array_family/__init__.py' adding 'spotfinder/array_family/flex.py' adding 'spotfinder/command_line/__init__.py' adding 'spotfinder/command_line/find_active_area.py' adding 'spotfinder/command_line/image_viewer.py' adding 'spotfinder/command_line/mp_spotfinder_server_read_file.py' adding 'spotfinder/command_line/signal_strength.py' adding 'spotfinder/command_line/sweep_strength.py' adding 'spotfinder/command_line/thin_client.py' adding 'spotfinder/core_toolbox/__init__.py' adding 'spotfinder/core_toolbox/close_spots_detail.py' adding 'spotfinder/diffraction/__init__.py' adding 'spotfinder/diffraction/geometry.py' adding 'spotfinder/diffraction/imagefiles.py' adding 'spotfinder/dxtbx_toolbox/__init__.py' adding 'spotfinder/dxtbx_toolbox/practical_heuristics.py' adding 'spotfinder/math_support/__init__.py' adding 'spotfinder/math_support/sphere_formulae.py' adding 'spotfinder/servers/__init__.py' adding 'spotfinder/servers/adsc_client.py' adding 'spotfinder/servers/apache.py' adding 'spotfinder/servers/apache_bcsb.py' adding 'spotfinder/servers/apache_dials.py' adding 'spotfinder/servers/apache_utils.py' adding 'spotfinder/servers/bcsb_client_example.py' adding 'spotfinder/servers/general_client_example.py' adding 'spotfinder/servers/mp_spotfinder_server_is_alive.py' adding 'spotfinder/servers/mp_spotfinder_server_read_file.py' adding 'spotfinder/servers/multipart_encoder.py' adding 'spotfinder/servers/pilatus_client.py' adding 'spotfinder/servers/specific_client_example.py' adding 'spotfinder/servers/spotfinder_server_client_push.py' adding 'spotfinder/servers/spotfinder_server_read_file.py' adding 'spotfinder/servers/thin_client.py' adding 'wxtbx/__init__.py' adding 'wxtbx/adp_statistics.py' adding 'wxtbx/anomalous_scattering.py' adding 'wxtbx/app.py' adding 'wxtbx/b_plot.py' adding 'wxtbx/bitmaps.py' adding 'wxtbx/browser.py' adding 'wxtbx/checklistctrl.py' adding 'wxtbx/custom_restraints.py' adding 'wxtbx/ensemble_validation.py' adding 'wxtbx/errors.py' adding 'wxtbx/heavy_atoms.py' adding 'wxtbx/icons.py' adding 'wxtbx/info_panels.py' adding 'wxtbx/layout.py' adding 'wxtbx/listeditor.py' adding 'wxtbx/metallicbutton.py' adding 'wxtbx/misc_dialogs.py' adding 'wxtbx/monitor.py' adding 'wxtbx/mtz_dump.py' adding 'wxtbx/path_dialogs.py' adding 'wxtbx/pdb_editor.py' adding 'wxtbx/polygon.py' adding 'wxtbx/polygon_db_viewer.py' adding 'wxtbx/process_control.py' adding 'wxtbx/qstat_view.py' adding 'wxtbx/run_tests.py' adding 'wxtbx/segmentedctrl.py' adding 'wxtbx/sequence_view.py' adding 'wxtbx/symmetry_dialog.py' adding 'wxtbx/tables.py' adding 'wxtbx/utils.py' adding 'wxtbx/windows.py' adding 'wxtbx/xtriage.py' adding 'wxtbx/command_line/__init__.py' adding 'wxtbx/command_line/anomalous_differences_histogram.py' adding 'wxtbx/command_line/b_plot.py' adding 'wxtbx/command_line/inspect_r_free_flags.py' adding 'wxtbx/command_line/loggraph.py' adding 'wxtbx/command_line/pdb_editor.py' adding 'wxtbx/command_line/pdb_statistics.py' adding 'wxtbx/command_line/plan_sad_experiment.py' adding 'wxtbx/command_line/plot_anomalous_scattering.py' adding 'wxtbx/command_line/show_file_info.py' adding 'wxtbx/command_line/wxpython.py' adding 'wxtbx/command_line/xtriage.py' adding 'wxtbx/phil_controls/__init__.py' adding 'wxtbx/phil_controls/array_label.py' adding 'wxtbx/phil_controls/boolctrl.py' adding 'wxtbx/phil_controls/choice.py' adding 'wxtbx/phil_controls/choice_multi.py' adding 'wxtbx/phil_controls/floatctrl.py' adding 'wxtbx/phil_controls/floats.py' adding 'wxtbx/phil_controls/intctrl.py' adding 'wxtbx/phil_controls/ints.py' adding 'wxtbx/phil_controls/misc_ctrls.py' adding 'wxtbx/phil_controls/numbers.py' adding 'wxtbx/phil_controls/path.py' adding 'wxtbx/phil_controls/simple_dialogs.py' adding 'wxtbx/phil_controls/space_group.py' adding 'wxtbx/phil_controls/strctrl.py' adding 'wxtbx/phil_controls/strings.py' adding 'wxtbx/phil_controls/symop.py' adding 'wxtbx/phil_controls/text_base.py' adding 'wxtbx/phil_controls/tree.py' adding 'wxtbx/phil_controls/tribool.py' adding 'wxtbx/phil_controls/unit_cell.py' adding 'wxtbx/plots/__init__.py' adding 'wxtbx/plots/emringer.py' adding 'wxtbx/plots/molprobity.py' adding 'wxtbx/regression/__init__.py' adding 'wxtbx/regression/_headless_construct_cases.py' adding 'wxtbx/regression/_warnings.py' adding 'wxtbx/regression/tst_b_plot.py' adding 'wxtbx/regression/tst_headless_construct.py' adding 'wxtbx/regression/tst_imports.py' adding 'wxtbx/regression/tst_process_control.py' adding 'wxtbx/reports/__init__.py' adding 'wxtbx/reports/blast.py' adding 'wxtbx/reports/pdb_symmetry.py' adding 'xcif/__init__.py' adding 'xcif/run_tests.py' adding 'xcif/benchmarks/__init__.py' adding 'xcif/benchmarks/run_benchmarks.py' adding 'xcif/regression/__init__.py' adding 'xcif/regression/tst_api_compat.py' adding 'xcif/regression/tst_bindings.py' adding 'xcif/regression/tst_example_parse.py' adding 'xcif/regression/tst_example_tokenize.py' adding 'xcif/regression/tst_gil_release.py' adding 'xcif/regression/tst_iotbx_cif_reader_engine.py' adding 'xcif/regression/tst_iotbx_cif_reader_parity.py' adding 'xcif/regression/tst_memory.py' adding 'xcif/regression/tst_non_strict_mode.py' adding 'xcif/regression/tst_parse_verify.py' adding 'xcif/regression/tst_pdb_coordinates.py' adding 'xcif/regression/tst_pdb_sf.py' adding 'xcif/regression/tst_quoted_string_delimiter.py' adding 'xcif/regression/tst_roundtrip.py' adding 'xcif/regression/tst_semicolon_field_strict.py' adding 'xcif/regression/tst_string_interning.py' adding 'xcif/regression/tst_utf8.py' adding 'cctbx-2023.12.dist-info/METADATA' adding 'cctbx-2023.12.dist-info/WHEEL' adding 'cctbx-2023.12.dist-info/top_level.txt' adding 'cctbx-2023.12.dist-info/RECORD' removing build/bdist.linux-loongarch64/wheel Successfully built cctbx-2023.12-py3-none-any.whl I: pybuild plugin_pyproject:168: Unpacking wheel built for python3.15 with "installer" module I: pybuild plugin_pyproject:142: Building wheel for python3.14 with "build" module I: pybuild base:383: python3.14 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx * Building wheel... running bdist_wheel running build running build_py running egg_info writing cctbx.egg-info/PKG-INFO writing dependency_links to cctbx.egg-info/dependency_links.txt writing requirements to cctbx.egg-info/requires.txt writing top-level names to cctbx.egg-info/top_level.txt reading manifest file 'cctbx.egg-info/SOURCES.txt' adding license file 'LICENSE.txt' writing manifest file 'cctbx.egg-info/SOURCES.txt' installing to build/bdist.linux-loongarch64/wheel running install running install_lib creating build/bdist.linux-loongarch64/wheel creating build/bdist.linux-loongarch64/wheel/cctbx_website creating build/bdist.linux-loongarch64/wheel/cctbx_website/command_line copying build/lib/cctbx_website/command_line/tst_comment_to_docstring.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/comment_to_docstring.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/extract_script_from_html_cctbx_doc.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/edit_html.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/run_pdoc_cctbx_api.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line copying build/lib/cctbx_website/command_line/edit_for_boost.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/command_line creating build/bdist.linux-loongarch64/wheel/cctbx_website/regression copying build/lib/cctbx_website/regression/tst_9_doc_maps_boxing.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_5_doc_hlo_map_manager.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_12_script_compare_ss.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_7_doc_low_flex_advanced.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_15_doc_models_hierarchy.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_2_doc_hlo_intro.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_11_script_1.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_4_doc_hlo_data_manager.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_10_doc_programming_tips_1.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_3_doc_hlo_model_manager.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_8_doc_maps_intro.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_13_script_ideal_ss.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_1_template.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_18_doc_programming_tips_2.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_py_from_html.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/exercise.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_17_script_rfactors.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/regression/tst_19_doc_programming_tips_3.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website/regression copying build/lib/cctbx_website/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website copying build/lib/cctbx_website/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website copying build/lib/cctbx_website/run_tests.py -> build/bdist.linux-loongarch64/wheel/./cctbx_website creating build/bdist.linux-loongarch64/wheel/boost_adaptbx creating build/bdist.linux-loongarch64/wheel/boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/rational.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/python.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/optional.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/tuple.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/__init__.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/boost copying build/lib/boost_adaptbx/boost/std_pair.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/boost creating build/bdist.linux-loongarch64/wheel/boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/double_overflow.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/show_platform_info.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/segmentation_fault.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/gcd.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/divide_by_zero.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/inexact.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/int_overflow.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/lcm.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/command_line/show_environ_usage.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/command_line copying build/lib/boost_adaptbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx copying build/lib/boost_adaptbx/hybrid_times.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx copying build/lib/boost_adaptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx creating build/bdist.linux-loongarch64/wheel/boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/minimum_cut_enumerate.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/maximum_clique.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/clustering_algorithm.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/utility.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/breadth_first_search.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/__init__.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/graph_structure_comparison.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/min_cut_max_flow.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/connected_component_algorithm.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/graph/metric.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx/graph copying build/lib/boost_adaptbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./boost_adaptbx creating build/bdist.linux-loongarch64/wheel/mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/suitename copying build/lib/mmtbx/suitename/suiteninit.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suitename.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/transdent.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/diangle.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suiteninput.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suitealyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suitenout.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/dualparse.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/mainchain.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suites.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename copying build/lib/mmtbx/suitename/suitenamedefs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/suitename creating build/bdist.linux-loongarch64/wheel/mmtbx/kinemage copying build/lib/mmtbx/kinemage/ribbon_rendering.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/kinemage copying build/lib/mmtbx/kinemage/ribbons.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/kinemage copying build/lib/mmtbx/kinemage/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/kinemage copying build/lib/mmtbx/kinemage/nrubs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/kinemage copying build/lib/mmtbx/kinemage/validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/kinemage copying build/lib/mmtbx/kinemage/tst_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/kinemage creating build/bdist.linux-loongarch64/wheel/mmtbx/maps copying build/lib/mmtbx/maps/tst_correlation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/tst_composite_omit_map_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/fem.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/composite_omit_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/superpose.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/mtriage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/polder.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/correlation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/kick.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/tst_composite_omit_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/xtrapol8.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/fobs_minus_fobs_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/tst_composite_omit_map_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps copying build/lib/mmtbx/maps/map_model_cc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/maps creating build/bdist.linux-loongarch64/wheel/mmtbx/refinement copying build/lib/mmtbx/refinement/targets.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tardy.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_select_best_starting_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_fit_rotamers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/minimization_ncs_constraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_group.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/occupancies.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/print_statistics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement creating build/bdist.linux-loongarch64/wheel/mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_monitor.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_weight.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_water.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_individual_sites_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_7.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_6.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_rigid_body.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_small_molecule.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_selection.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_residues.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_1H.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_0H.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_his.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_6.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/weight.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_1H.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_individual_sites_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_individual_sites_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_water.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_0.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/rigid_body.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/individual_sites.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residues_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/explode_and_refine.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/fit_residue.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/adp.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/tst_fit_residue_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/real_space/occupancy.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/real_space copying build/lib/mmtbx/refinement/select_best_starting_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/geometry_minimization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/minimization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/flip_peptide_side_chain.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_rigid_body.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/anomalous_scatterer_groups.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement creating build/bdist.linux-loongarch64/wheel/mmtbx/refinement/ensemble_refinement copying build/lib/mmtbx/refinement/ensemble_refinement/ensemble_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/ensemble_refinement copying build/lib/mmtbx/refinement/ensemble_refinement/ensemble_probability.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/ensemble_refinement copying build/lib/mmtbx/refinement/ensemble_refinement/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement/ensemble_refinement copying build/lib/mmtbx/refinement/group.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_refinement_flags.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/inspect_tardy_trajectory.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_occupancy_selections.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/calculators.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_anomalous_scatterer_groups.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/refinement_flags.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/weights_params.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/rigid_body.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_misc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/orca.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/wrappers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/minimization_monitor.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/adp_refinement.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/weights.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/energy_monitor.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_real_space_simple.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement copying build/lib/mmtbx/refinement/tst_group_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/refinement creating build/bdist.linux-loongarch64/wheel/mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/rcsb_web_services.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/tst_rcsb_entry_request.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/rcsb_entry_request.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/wwpdb copying build/lib/mmtbx/wwpdb/tst_rcsb_web_services.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/wwpdb creating build/bdist.linux-loongarch64/wheel/mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/riding.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_11.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_7.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_16.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_8.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_15.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_14.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_validate_H.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_minimize.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_const_dihedral.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_6.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/neutron_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_time.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/reduce_hydrogen.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_connectivity.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_9.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_13.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_12.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/validate_H.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_8.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/parameterization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/specialised_hydrogen_atoms.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_fd_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_riding_coefficients.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_7.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_10.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen_6.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_add_hydrogen.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/connectivity.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/build_hydrogens.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens copying build/lib/mmtbx/hydrogens/tst_parameterization_9.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/hydrogens creating build/bdist.linux-loongarch64/wheel/mmtbx/alignment copying build/lib/mmtbx/alignment/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/alignment creating build/bdist.linux-loongarch64/wheel/mmtbx/chemical_components copying build/lib/mmtbx/chemical_components/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/chemical_components copying build/lib/mmtbx/chemical_components/cif_parser.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/chemical_components copying build/lib/mmtbx/chemical_components/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/chemical_components creating build/bdist.linux-loongarch64/wheel/mmtbx/masks copying build/lib/mmtbx/masks/tst_masks.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/masks copying build/lib/mmtbx/masks/tst_asu_mask.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/masks copying build/lib/mmtbx/masks/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/masks copying build/lib/mmtbx/lattice.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/proq2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/den copying build/lib/mmtbx/den/plot_weights.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/den copying build/lib/mmtbx/den/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/den copying build/lib/mmtbx/den/refinement.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/den creating build/bdist.linux-loongarch64/wheel/mmtbx/command_line copying build/lib/mmtbx/command_line/sort_hetatms.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/undowser2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/suitename.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/show_r_factors_by_shell.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_vs_sequence.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fetch_pdb.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ramalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rebuild_rotarama_cache.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/molprobity.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/barbed_wire_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/development_fem.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rna_validate_suites.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/plan_sad_experiment.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/chiral_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/find_tls_groups.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mon_lib_cif_triage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/pdb_interpretation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rebuild_cablam_cache.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/models_as_chains.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/tls_as_xyz.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fmodel.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rna_validate_puckers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/altloc_remediate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cif_as_mtz.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mp_geo.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/atom_valence_simple.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cablam.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/table_one.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ligand_restraints_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rna_validate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/superpose.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/density_modification.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/map_to_structure_factors.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/holton_geometry_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/maps.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/select_best_starting_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/geometry_minimization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/next_gen_residue_typing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/debug_riding.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/nonbonded_overlaps.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/process_predicted_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ringer.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/emringer.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/probescore_ligand.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/xtriage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/r_factor_statistics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/comparama.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/water_b_factors.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ribbons.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rigid_bond_test.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/reduce_cryoem_resolution.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/kinemage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/hbond.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/map_comparison.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/validation_summary.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/clashscore2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/map_box.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/xmanip.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/matthews.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/real_space_correlation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/helix_sheet_recs_as_pdb_files.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/remove_outliers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/polder.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/pdbtools.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fab_elbow_angle.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/quantum_interface.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/tls.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_vs_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cbetadev.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/hydrogenate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/taam_minus_iam.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/next_gen_atom_typing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/arginine_geometry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/reciprocal_space_arrays.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/electrons.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/apply_ncs_to_ligand.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rna_validate_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/reduce2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rotalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/grow_density.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/f000.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/dynamics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rank_scale_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/ss_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cc_star.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/estimate_bijvoet_ratio.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/real_space_diff_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/distance_difference.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/prepare_pdb_deposition.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/angle.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/validate_ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/probe2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_vs_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/sisa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/where_is_that_cif_file.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/super.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mask.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/undowser.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mp_validate_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/omegalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/emringer_score.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/cablam_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/search_pdb_symmetry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/map_to_model_histogram.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/perigee.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/model_model_distances.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/maximum_entropy_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/xtrapol8.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/tls_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/find_residue_in_pdb.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/refine_anomalous_substructure.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/rama_z.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/verify_mon_lib_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/find_peaks_holes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/secondary_structure_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/prune_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/pdb_atom_selection.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/secondary_structure_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/mtz2map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/suitename_old.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fake_f_obs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/fobs_minus_fobs_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/validate_H_cl_app.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/development_aev.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line copying build/lib/mmtbx/command_line/massage_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/command_line creating build/bdist.linux-loongarch64/wheel/mmtbx/validation copying build/lib/mmtbx/validation/undowser2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/fav_lists.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/waters.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/ramalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/barbed_wire_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/sequence.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/ligand_interactions.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/cablam.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation creating build/bdist.linux-loongarch64/wheel/mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_suitename.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_rama_z_02.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_probe2_asu_bond_proxies.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_cbetadev_02.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_do_flips_clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_arguments.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_undowser2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_undowser.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_chiral_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_experimental.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_mp_validate_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_mp_geo_endtoend.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_omegalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_cbetadev.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_mp_geo.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_symmetry_SS.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_model_properties.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_rama_z_01.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_ramalyze2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_ramalyze_rare.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_rna_validate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_keep_hydrogens.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_barbed_wire_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_cablam.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_molprobity_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_rotalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_find_region_max_value.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/run_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_clashscore_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_ramalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_waters.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/regression/tst_cablam_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/regression copying build/lib/mmtbx/validation/rna_validate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/holton_geometry_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/cbd_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/graphics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/comparama.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/experimental.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/clashscore2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation creating build/bdist.linux-loongarch64/wheel/mmtbx/validation/ramachandran copying build/lib/mmtbx/validation/ramachandran/convert_from_text.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/ramachandran copying build/lib/mmtbx/validation/ramachandran/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/ramachandran copying build/lib/mmtbx/validation/convert_lists.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/ensembles.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/cbetadev.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/rotalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/phi_psi_2_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/validate_ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/undowser.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/model_properties.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation creating build/bdist.linux-loongarch64/wheel/mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/mp_geo.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/percentile_clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/kinemage_templates.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/probescore_ligand.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/percentile_mpscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/table_from_json.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/molprobity/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation/molprobity copying build/lib/mmtbx/validation/mp_validate_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/omegalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/comprehensive_residue.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/rama_z.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/mean_devs_PRO_phi_psi.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/analyze_peptides.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/mean_devs_others_phi_psi.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/chain_comparison.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation copying build/lib/mmtbx/validation/datasets.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/validation creating build/bdist.linux-loongarch64/wheel/mmtbx/geometry copying build/lib/mmtbx/geometry/shared_types.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/topology.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/clash.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/altloc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/sphere_surface_sampling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/indexing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry copying build/lib/mmtbx/geometry/asa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry creating build/bdist.linux-loongarch64/wheel/mmtbx/regression copying build/lib/mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_metal_link_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_loop_closure.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_apply_cif_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_maps_misc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_map_model_cc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_validate_ligands_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_holton_geometry_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_model_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_find_ss_structure_cif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_map_type_parser.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/make_fake_anomalous_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_mtz2map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_find_ss_structure.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_geo_min_restraints_phil.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_command_line_input.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce_timeout.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce_cryoem_resolution.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_statistics_output.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_find_ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ligand_ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ringer.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_validate_ligands_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_sequence_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_model_vs_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_process_predicted_model_cif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_scattering_table.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_origin_ids.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_rdkit_utils_molecule.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_adp_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ml_estimate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_minimize_chain.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_add_arrows_on_plot.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_cif_as_mtz_wavelengths.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_multi_residue_class.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_flipping_his.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_regularize_from_pdb_cif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_scattering_type_registry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_validate_ligands_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_superpose.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression creating build/bdist.linux-loongarch64/wheel/mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_symmetry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_merge.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_neutralize_scatterers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_pairs_within.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_dedeuterate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_ramachandran.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_biomt_mtrix_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_utils_merge_models.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_remove_alternative_conformations.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_cart_ref_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_mtrix.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_tors_ref_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_biomt_mtrix.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/model/tst_model_get_vdw_radii.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/model copying build/lib/mmtbx/regression/tst_real_space_correlation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_altloc_remediate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_table_one.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_sort_hetatms.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_chain_comparison.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression creating build/bdist.linux-loongarch64/wheel/mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_ncs_restraints_group_list.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_ncs_search.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_minimization_ncs_constraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_ncs_search_flips.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_ncs_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/ncs/tst_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/ncs copying build/lib/mmtbx/regression/tst_clashes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_msa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_anomalous_substructure.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_dynamics_cli.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_no_cryst1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ligand_interactions.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_prune_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_validation_summary.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_sampled_model_density.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_models_to_from_chains.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression creating build/bdist.linux-loongarch64/wheel/mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_get_t_scheme.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_optimise_amplitudes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_as_xyz.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tls/tst_tls_refinement_fft.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression/tls copying build/lib/mmtbx/regression/tst_polder_box.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_psi_phi_extraction.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_rdkit_utils_fragmentation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_and_dm.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_domains_from_pae.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_schrodinger_interface.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_geometry_minimization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_pdbtools.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_altloc_chain_break.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_rigid_bond_test.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_refine_anomalous_substructure.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_model_vs_sequence.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_misc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_mmtbx_refinement_wrappers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_fd.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce2_no_symmetry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_alignment.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ribbons.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_chain_comparison_cif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_special_term_at_end.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_add_h_to_water.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_isomorphous_difference_misc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_angle.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_process_predicted_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_lrv.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_regularize_from_pdb.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce_switch.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_arginine_geometry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_reduce_custom_bond.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_examples.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ss_validation_long_chainids.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_probe.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_ccs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_validate_ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_fmodel_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_cis_trans_peptide_link.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_rank_scale_map.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_ordered_solvent.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_cc_star.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_domains_from_pae_cif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression copying build/lib/mmtbx/regression/tst_polder_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/regression creating build/bdist.linux-loongarch64/wheel/mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_aniso_scaler.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/scaler.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/kbu_refinery.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_mosaic.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_scaler.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/example.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/f_model_all_scales.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/multi_mask_bulk_solvent.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/bulk_solvent_and_scaling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/example2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/mosaic.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/bulk_solvent/tst_flat_nonuniform.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/bulk_solvent copying build/lib/mmtbx/superpose.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/real_space copying build/lib/mmtbx/real_space/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/real_space copying build/lib/mmtbx/real_space/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/real_space creating build/bdist.linux-loongarch64/wheel/mmtbx/ligands copying build/lib/mmtbx/ligands/tst_xtal_screens.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/hierarchy_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/tst_ready_set_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/electrons.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/ready_set_basics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/tst_electron_scripting.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/rdkit_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/chemistry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/xtal_screens.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/ligands/ready_set_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ligands copying build/lib/mmtbx/map_tools.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/building copying build/lib/mmtbx/building/tst_extend_sidechains_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building creating build/bdist.linux-loongarch64/wheel/mmtbx/building/ligands copying build/lib/mmtbx/building/ligands/tst_00.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/ligands copying build/lib/mmtbx/building/ligands/lifi.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/ligands copying build/lib/mmtbx/building/ligands/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/ligands copying build/lib/mmtbx/building/minimize_chain.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building copying build/lib/mmtbx/building/extend_sidechains.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building copying build/lib/mmtbx/building/merge_models.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building copying build/lib/mmtbx/building/tst_extend_sidechains.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building creating build/bdist.linux-loongarch64/wheel/mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/starting_conformations.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/berkeley_ramalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/ccd.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_closure/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building/loop_closure copying build/lib/mmtbx/building/loop_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building copying build/lib/mmtbx/building/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building copying build/lib/mmtbx/building/cablam_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/building copying build/lib/mmtbx/process_predicted_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/max_lik copying build/lib/mmtbx/max_lik/max_like_non_uniform.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/max_lik copying build/lib/mmtbx/max_lik/tst_maxlik.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/max_lik copying build/lib/mmtbx/max_lik/tst_max_lik.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/max_lik copying build/lib/mmtbx/max_lik/maxlik.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/max_lik copying build/lib/mmtbx/max_lik/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/max_lik creating build/bdist.linux-loongarch64/wheel/mmtbx/utils copying build/lib/mmtbx/utils/ntc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/rotatable_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/fab_elbow_angle.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/grid2d.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/utils copying build/lib/mmtbx/utils/tst_switch_rotamers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/utils creating build/bdist.linux-loongarch64/wheel/mmtbx/nci copying build/lib/mmtbx/nci/skew_kurt_plot.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/nci copying build/lib/mmtbx/nci/hbond.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/nci copying build/lib/mmtbx/nci/data_filtering.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/nci copying build/lib/mmtbx/nci/tst_hbond.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/nci copying build/lib/mmtbx/nci/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/nci creating build/bdist.linux-loongarch64/wheel/mmtbx/density_modification copying build/lib/mmtbx/density_modification/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/density_modification copying build/lib/mmtbx/density_modification/tst_density_modification.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/density_modification creating build/bdist.linux-loongarch64/wheel/mmtbx/ions copying build/lib/mmtbx/ions/identify.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_approx_zn.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_symmetry_axis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pickle.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/halides.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_geometries.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions creating build/bdist.linux-loongarch64/wheel/mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/dump_sites.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/tst_classifier_01.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/svm/tst_classifier_02.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions/svm copying build/lib/mmtbx/ions/tst_validate_mg.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/build.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_k.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/environment.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/geometry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_parameters.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_validate_ca.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_ca_svm.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_environment.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_ca.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions copying build/lib/mmtbx/ions/tst_pick_mg.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ions creating build/bdist.linux-loongarch64/wheel/mmtbx/model copying build/lib/mmtbx/model/model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/model copying build/lib/mmtbx/model/restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/model copying build/lib/mmtbx/model/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/model copying build/lib/mmtbx/model/statistics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/model copying build/lib/mmtbx/model/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/model creating build/bdist.linux-loongarch64/wheel/mmtbx/reduce copying build/lib/mmtbx/reduce/Optimizers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/reduce copying build/lib/mmtbx/reduce/InteractionGraph.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/reduce copying build/lib/mmtbx/reduce/Movers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/reduce copying build/lib/mmtbx/reduce/tst_mmtbx_reduce_ext.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/reduce copying build/lib/mmtbx/reduce/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/reduce copying build/lib/mmtbx/restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/arrays.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/f_model_info.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/f_model copying build/lib/mmtbx/f_model/f_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/f_model copying build/lib/mmtbx/f_model/f_model_info.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/f_model copying build/lib/mmtbx/f_model/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/f_model creating build/bdist.linux-loongarch64/wheel/mmtbx/ncs copying build/lib/mmtbx/ncs/cartesian_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/tncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs_search.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs_restraints_group_list.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs_params.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/ncs/ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ncs copying build/lib/mmtbx/xmanip.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/real_space_correlation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/dynamics copying build/lib/mmtbx/dynamics/constants.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/ensemble_cd.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/simulated_annealing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/tst_sa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/cartesian_dynamics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/tst_cartesian_dynamics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/dynamics/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/dynamics copying build/lib/mmtbx/pdb_distances.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/pdbtools.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/find_peaks.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/model_vs_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/tls copying build/lib/mmtbx/tls/perm10.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/tls_as_xyz.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/command_line.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/ladp.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/optimise_amplitudes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm15.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/tools.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/decompose.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm12.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm13.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm14.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/tls/perm11.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/tls copying build/lib/mmtbx/xmanip_tasks.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/msa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/resolve_resources.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/invariant_domain.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/solvent copying build/lib/mmtbx/solvent/ensemble_ordered_solvent.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/solvent copying build/lib/mmtbx/solvent/map_to_water.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/solvent copying build/lib/mmtbx/solvent/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/solvent copying build/lib/mmtbx/solvent/ordered_solvent.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/solvent creating build/bdist.linux-loongarch64/wheel/mmtbx/programs copying build/lib/mmtbx/programs/undowser2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/suitename.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/model_vs_sequence.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ramalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/barbed_wire_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rna_validate_suites.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/chiral_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/fetch.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/fmodel.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rna_validate_puckers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/atom_valence_simple.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/cablam.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ligand_restraints_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rna_validate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/holton_geometry_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/next_gen_residue_typing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/debug_riding.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/nonbonded_overlaps.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/process_predicted_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/emringer.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/probescore_ligand.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/comparama.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/water_b_factors.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ribbons.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/reduce_cryoem_resolution.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/hbond.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/clashscore2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/matthews.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/real_space_correlation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/polder.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/pdbtools.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/quantum_interface.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/elbow_services.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/cbetadev.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/hydrogenate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/taam_minus_iam.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/next_gen_atom_typing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/arginine_geometry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/clashscore.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rna_validate_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/reduce2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rotalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ss_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/atom_selection.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/prepare_pdb_deposition.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/validate_ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/probe2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/mask.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/undowser.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/mp_validate_bonds.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/omegalyze.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/cablam_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/xtrapol8.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/rama_z.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/suitename_old.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/pdb_as_cif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs copying build/lib/mmtbx/programs/ss_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/programs creating build/bdist.linux-loongarch64/wheel/mmtbx/polygon copying build/lib/mmtbx/polygon/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/polygon copying build/lib/mmtbx/polygon/tst_polygon_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/polygon copying build/lib/mmtbx/polygon/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/polygon copying build/lib/mmtbx/polygon/output.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/polygon copying build/lib/mmtbx/polygon/tst_gui.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/polygon creating build/bdist.linux-loongarch64/wheel/mmtbx/sisa creating build/bdist.linux-loongarch64/wheel/mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_ga.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_masks.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_util.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_input.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_mtz.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/mod_optimize.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/optimize/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa/optimize copying build/lib/mmtbx/sisa/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/sisa copying build/lib/mmtbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./mmtbx copying build/lib/mmtbx/grow_density.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/rotamer copying build/lib/mmtbx/rotamer/nqh.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/sidechain_angles.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/graphics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/ramachandran_eval.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/tst_rotamer_eval.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/rotamer_eval.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/ramachandran_eval_deprecated.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer copying build/lib/mmtbx/rotamer/n_dim_table.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rotamer creating build/bdist.linux-loongarch64/wheel/mmtbx/ringer copying build/lib/mmtbx/ringer/tst_emringer.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/em_scoring.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/emringer.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/tst_em_rscc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/em_rolling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/ringer/em_rscc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ringer copying build/lib/mmtbx/pdb_symmetry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/rsr copying build/lib/mmtbx/rsr/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rsr copying build/lib/mmtbx/rsr/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/rsr copying build/lib/mmtbx/domains_from_pae.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/probe copying build/lib/mmtbx/probe/tst_mmtbx_probe_ext.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/probe copying build/lib/mmtbx/probe/AtomTypes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/probe copying build/lib/mmtbx/probe/Helpers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/probe copying build/lib/mmtbx/probe/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/probe copying build/lib/mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/probe creating build/bdist.linux-loongarch64/wheel/mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_4.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_idealized_aa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_metal_coordination.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/mmtbx_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/hydrogen_restrictions.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/cif_types.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_glyco_coordination.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/pdb_interpretation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_cif_triage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/glyco_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_carbo_linking.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_neutron_distance.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_iron_sulfur_clusters.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_selection.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/glyco_chiral_values.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/rna_sugar_pucker_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_rotamer_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/idealized_aa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/conv_v2_v3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_glyco_hand.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_rna_dna_interpretation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_cif_types.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/correct_hydrogen_geometries.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_chg.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_motif.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/server.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/populate_auto_linking_origin_ids.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/bondlength_defaults.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_all_cif_files.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_user_supplied_library.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/conformation_dependent_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/rotamer_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_paral_geo.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/linking_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_server.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/cif_triage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_5.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_correct_hydrogens.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_superpose_ideal.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_deuterium_terminii.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_protein_interpretation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_linking.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/linking_setup.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/linking_mixins.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/geostd_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library copying build/lib/mmtbx/monomer_library/tst_geo_reduce_for_tardy.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/monomer_library creating build/bdist.linux-loongarch64/wheel/mmtbx/twinning copying build/lib/mmtbx/twinning/probabalistic_detwinning.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/twinning copying build/lib/mmtbx/twinning/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/twinning copying build/lib/mmtbx/twinning/twin_f_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/twinning creating build/bdist.linux-loongarch64/wheel/mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/regularize_from_pdb.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/find_ss_from_ca.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/tst_segid.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure creating build/bdist.linux-loongarch64/wheel/mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_1.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_ss_id_ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_3.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/ss_idealization.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/tst_io.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/build/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure/build copying build/lib/mmtbx/secondary_structure/tst_insertion_codes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/secondary_structure_params.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/proteins.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/ss_validation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure copying build/lib/mmtbx/secondary_structure/nucleic_acids.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/secondary_structure creating build/bdist.linux-loongarch64/wheel/mmtbx/atomic_environment_vectors copying build/lib/mmtbx/atomic_environment_vectors/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/atomic_environment_vectors copying build/lib/mmtbx/atomic_environment_vectors/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/atomic_environment_vectors copying build/lib/mmtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/sample_rotamers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/rotamer_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/all_his.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/idealized_aa_residues copying build/lib/mmtbx/idealized_aa_residues/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/idealized_aa_residues creating build/bdist.linux-loongarch64/wheel/mmtbx/scaling copying build/lib/mmtbx/scaling/bayesian_estimator.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/make_param.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/outlier_plots.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_xtriage_twin_analyses.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/plan_sad_experiment.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/outlier_rejection.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/mean_f_rms_f.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/relative_wilson.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_absences.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_scaling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/pre_scale.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/ta_alpha_beta_calc.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/basic_analyses.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/random_omit.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/xtriage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/twmad_scale.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/sigmaa_estimation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/matthews.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/remove_outliers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_mean_f_rms_f.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_outlier.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/massage_twin_detwin_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_sigmaa.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/relative_scaling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/absence_likelihood.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/absolute_scaling.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/thorough_outlier_test.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_massage_data.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/absences.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/fa_estimation.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/pair_analyses.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_bayesian_estimator.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/data_statistics.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/twin_analyses.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_xtriage.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling copying build/lib/mmtbx/scaling/tst_plan_sad_experiment.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/scaling creating build/bdist.linux-loongarch64/wheel/mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_03.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/pair_interaction.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_00.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_05.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_04.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_02.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/tst_01.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction copying build/lib/mmtbx/pair_interaction/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/pair_interaction creating build/bdist.linux-loongarch64/wheel/mmtbx/ias copying build/lib/mmtbx/ias/tst_ias.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ias copying build/lib/mmtbx/ias/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/ias copying build/lib/mmtbx/clashes.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/geometry_restraints creating build/bdist.linux-loongarch64/wheel/mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/reference_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_reference_ramachandran.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_ter_records.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/tst_reference_hbond.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints/torsion_restraints copying build/lib/mmtbx/geometry_restraints/base_qm_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_reference_coordinate.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/reference.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/ramachandran.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/external.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/geo_file_parsing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/mopac_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_c_beta_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/c_beta.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_replace_in_place.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_xtb_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_reference_coordinate2.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_ramachandran.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_geo_file_parsing.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/quantum_interface.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/qm_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/tst_orca_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/quantum_restraints_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/qi_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/afitt.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/xtb_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints copying build/lib/mmtbx/geometry_restraints/orca_manager.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/geometry_restraints creating build/bdist.linux-loongarch64/wheel/mmtbx/disorder copying build/lib/mmtbx/disorder/backbone.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/tst.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/tst_backbone.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/analyze_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/disorder copying build/lib/mmtbx/disorder/tst_analyze_model.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/disorder copying build/lib/mmtbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./mmtbx creating build/bdist.linux-loongarch64/wheel/mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/check_cdl_database.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_mcl_01.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/rdl_database.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/density_dependent_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/omega.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/multi_residue_cdl_class.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/mcl_sf4_coordination.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_cdl.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/sf4_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_mcl_03.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/altloc_weighting.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/mcl.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/LinkedResidues.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/cdl_database.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/investigate_rotamer_space.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/testing_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_multi_residue_rna.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_mcl_02.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_pH_mechanism.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_omega_cdl.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/cdl_setup.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/multi_base_class.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/omega_database.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/hydrogen_bonding.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/cdl_svl_database.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/cdl_utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/bond_angle_registry.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/multi_residue_class.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/metal_coordination_library.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/hpdl_database.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/__init__.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_enol_peptide.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_cdl_esd.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/utils.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_hpdl.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/enol_peptide_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_mutli_residue.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/nucleotides.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/pH_dependent_restraints.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/tst_rdl.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/histidines.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library copying build/lib/mmtbx/conformation_dependent_library/rotamers.py -> build/bdist.linux-loongarch64/wheel/./mmtbx/conformation_dependent_library creating build/bdist.linux-loongarch64/wheel/xcif creating build/bdist.linux-loongarch64/wheel/xcif/regression copying build/lib/xcif/regression/tst_non_strict_mode.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_api_compat.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_iotbx_cif_reader_engine.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_parse_verify.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_quoted_string_delimiter.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_utf8.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_example_tokenize.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_roundtrip.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_iotbx_cif_reader_parity.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_semicolon_field_strict.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_gil_release.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_string_interning.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_pdb_coordinates.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_bindings.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_pdb_sf.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_example_parse.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression copying build/lib/xcif/regression/tst_memory.py -> build/bdist.linux-loongarch64/wheel/./xcif/regression creating build/bdist.linux-loongarch64/wheel/xcif/benchmarks copying build/lib/xcif/benchmarks/run_benchmarks.py -> build/bdist.linux-loongarch64/wheel/./xcif/benchmarks copying build/lib/xcif/benchmarks/__init__.py -> build/bdist.linux-loongarch64/wheel/./xcif/benchmarks copying build/lib/xcif/__init__.py -> build/bdist.linux-loongarch64/wheel/./xcif copying build/lib/xcif/run_tests.py -> build/bdist.linux-loongarch64/wheel/./xcif creating build/bdist.linux-loongarch64/wheel/cootbx copying build/lib/cootbx/ligand_checklist.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/xmlrpc_server.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/hydrogens_button.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/view_refinement.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/simple_zoom_list.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/validation_lists.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/interactive_edit.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/watch_file.py -> build/bdist.linux-loongarch64/wheel/./cootbx copying build/lib/cootbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cootbx creating build/bdist.linux-loongarch64/wheel/fable copying build/lib/fable/intrinsics.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/simple_compilation.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./fable creating build/bdist.linux-loongarch64/wheel/fable/command_line copying build/lib/fable/command_line/split.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/command_line/show_calls.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/command_line/insert_write_at_start_of_each_procedure.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/command_line/fem_include_search_paths.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/command_line/read.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/command_line/cout.py -> build/bdist.linux-loongarch64/wheel/./fable/command_line copying build/lib/fable/tokenization.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/tst_read.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/__init__.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/equivalence.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/read.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/utils.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/tst_cout_compile.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/tst_equivalence.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/run_tests.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/tst_cout.py -> build/bdist.linux-loongarch64/wheel/./fable copying build/lib/fable/cout.py -> build/bdist.linux-loongarch64/wheel/./fable creating build/bdist.linux-loongarch64/wheel/smtbx creating build/bdist.linux-loongarch64/wheel/smtbx/refinement creating build/bdist.linux-loongarch64/wheel/smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/site.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints creating build/bdist.linux-loongarch64/wheel/smtbx/refinement/constraints/geometrical copying build/lib/smtbx/refinement/constraints/geometrical/hydrogens.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/geometrical copying build/lib/smtbx/refinement/constraints/geometrical/all.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/geometrical copying build/lib/smtbx/refinement/constraints/geometrical/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/geometrical copying build/lib/smtbx/refinement/constraints/rigid.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/fpfdp.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/all.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints copying build/lib/smtbx/refinement/constraints/adp.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints creating build/bdist.linux-loongarch64/wheel/smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_occupancies.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_lbfgs.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_disorder.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_reparametrisation.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_same_group.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_rigid.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_constrained_structure.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/tests/tst_direction.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints/tests copying build/lib/smtbx/refinement/constraints/occupancy.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/constraints creating build/bdist.linux-loongarch64/wheel/smtbx/refinement/restraints copying build/lib/smtbx/refinement/restraints/origin_fixing_restraints.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/restraints copying build/lib/smtbx/refinement/restraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/restraints copying build/lib/smtbx/refinement/restraints/adp_restraints.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement/restraints copying build/lib/smtbx/refinement/weighting_schemes.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement copying build/lib/smtbx/refinement/least_squares.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement copying build/lib/smtbx/refinement/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/refinement creating build/bdist.linux-loongarch64/wheel/smtbx/masks copying build/lib/smtbx/masks/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/masks creating build/bdist.linux-loongarch64/wheel/smtbx/absolute_structure copying build/lib/smtbx/absolute_structure/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/absolute_structure creating build/bdist.linux-loongarch64/wheel/smtbx/command_line copying build/lib/smtbx/command_line/absolute_structure.py -> build/bdist.linux-loongarch64/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/anom_refine.py -> build/bdist.linux-loongarch64/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/refine.py -> build/bdist.linux-loongarch64/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/masks.py -> build/bdist.linux-loongarch64/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/command_line copying build/lib/smtbx/command_line/benchmark_refinement.py -> build/bdist.linux-loongarch64/wheel/./smtbx/command_line copying build/lib/smtbx/development.py -> build/bdist.linux-loongarch64/wheel/./smtbx creating build/bdist.linux-loongarch64/wheel/smtbx/regression creating build/bdist.linux-loongarch64/wheel/smtbx/regression/test_data copying build/lib/smtbx/regression/test_data/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/regression/test_data copying build/lib/smtbx/regression/tst_commandline_anomrefine.py -> build/bdist.linux-loongarch64/wheel/./smtbx/regression copying build/lib/smtbx/regression/tst_commandline_refine.py -> build/bdist.linux-loongarch64/wheel/./smtbx/regression copying build/lib/smtbx/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/regression creating build/bdist.linux-loongarch64/wheel/smtbx/stl copying build/lib/smtbx/stl/map.py -> build/bdist.linux-loongarch64/wheel/./smtbx/stl copying build/lib/smtbx/stl/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/stl copying build/lib/smtbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./smtbx copying build/lib/smtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx creating build/bdist.linux-loongarch64/wheel/smtbx/ab_initio copying build/lib/smtbx/ab_initio/charge_flipping.py -> build/bdist.linux-loongarch64/wheel/./smtbx/ab_initio copying build/lib/smtbx/ab_initio/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/ab_initio creating build/bdist.linux-loongarch64/wheel/smtbx/ab_initio/tests copying build/lib/smtbx/ab_initio/tests/tst_charge_flipping.py -> build/bdist.linux-loongarch64/wheel/./smtbx/ab_initio/tests copying build/lib/smtbx/ab_initio/tests/tst_ab_initio_ext.py -> build/bdist.linux-loongarch64/wheel/./smtbx/ab_initio/tests copying build/lib/smtbx/ab_initio/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/ab_initio/tests creating build/bdist.linux-loongarch64/wheel/smtbx/array_family copying build/lib/smtbx/array_family/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/array_family creating build/bdist.linux-loongarch64/wheel/smtbx/structure_factors copying build/lib/smtbx/structure_factors/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/structure_factors creating build/bdist.linux-loongarch64/wheel/smtbx/structure_factors/direct copying build/lib/smtbx/structure_factors/direct/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/structure_factors/direct copying build/lib/smtbx/utils.py -> build/bdist.linux-loongarch64/wheel/./smtbx creating build/bdist.linux-loongarch64/wheel/smtbx/source_generators copying build/lib/smtbx/source_generators/flex_fwd_h.py -> build/bdist.linux-loongarch64/wheel/./smtbx/source_generators copying build/lib/smtbx/source_generators/__init__.py -> build/bdist.linux-loongarch64/wheel/./smtbx/source_generators copying build/lib/smtbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./smtbx creating build/bdist.linux-loongarch64/wheel/fast_linalg copying build/lib/fast_linalg/__init__.py -> build/bdist.linux-loongarch64/wheel/./fast_linalg creating build/bdist.linux-loongarch64/wheel/ccp4io_adaptbx copying build/lib/ccp4io_adaptbx/tst.py -> build/bdist.linux-loongarch64/wheel/./ccp4io_adaptbx copying build/lib/ccp4io_adaptbx/copy_files.py -> build/bdist.linux-loongarch64/wheel/./ccp4io_adaptbx copying build/lib/ccp4io_adaptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./ccp4io_adaptbx creating build/bdist.linux-loongarch64/wheel/wxtbx copying build/lib/wxtbx/segmentedctrl.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/mtz_dump.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/bitmaps.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/layout.py -> build/bdist.linux-loongarch64/wheel/./wxtbx creating build/bdist.linux-loongarch64/wheel/wxtbx/reports copying build/lib/wxtbx/reports/pdb_symmetry.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/reports copying build/lib/wxtbx/reports/blast.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/reports copying build/lib/wxtbx/reports/__init__.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/reports copying build/lib/wxtbx/info_panels.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/listeditor.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/checklistctrl.py -> build/bdist.linux-loongarch64/wheel/./wxtbx creating build/bdist.linux-loongarch64/wheel/wxtbx/command_line copying build/lib/wxtbx/command_line/plan_sad_experiment.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/loggraph.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/pdb_editor.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/inspect_r_free_flags.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/plot_anomalous_scattering.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/xtriage.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/anomalous_differences_histogram.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/b_plot.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/wxpython.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/show_file_info.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/command_line/pdb_statistics.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/command_line copying build/lib/wxtbx/windows.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/icons.py -> build/bdist.linux-loongarch64/wheel/./wxtbx creating build/bdist.linux-loongarch64/wheel/wxtbx/regression copying build/lib/wxtbx/regression/tst_process_control.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/regression copying build/lib/wxtbx/regression/tst_headless_construct.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/regression copying build/lib/wxtbx/regression/_warnings.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/regression copying build/lib/wxtbx/regression/tst_b_plot.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/regression copying build/lib/wxtbx/regression/_headless_construct_cases.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/regression copying build/lib/wxtbx/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/regression copying build/lib/wxtbx/regression/tst_imports.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/regression copying build/lib/wxtbx/pdb_editor.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/anomalous_scattering.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/misc_dialogs.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/metallicbutton.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/xtriage.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/browser.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/polygon.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/b_plot.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/sequence_view.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/tables.py -> build/bdist.linux-loongarch64/wheel/./wxtbx creating build/bdist.linux-loongarch64/wheel/wxtbx/plots copying build/lib/wxtbx/plots/molprobity.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/plots copying build/lib/wxtbx/plots/emringer.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/plots copying build/lib/wxtbx/plots/__init__.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/plots copying build/lib/wxtbx/monitor.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/path_dialogs.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/app.py -> build/bdist.linux-loongarch64/wheel/./wxtbx creating build/bdist.linux-loongarch64/wheel/wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/choice_multi.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/boolctrl.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/tribool.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/tree.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/choice.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/strctrl.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/floats.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/misc_ctrls.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/floatctrl.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/symop.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/strings.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/numbers.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/space_group.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/__init__.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/ints.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/path.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/array_label.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/text_base.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/intctrl.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/unit_cell.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/phil_controls/simple_dialogs.py -> build/bdist.linux-loongarch64/wheel/./wxtbx/phil_controls copying build/lib/wxtbx/symmetry_dialog.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/adp_statistics.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/process_control.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/errors.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/heavy_atoms.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/custom_restraints.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/qstat_view.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/ensemble_validation.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/polygon_db_viewer.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/utils.py -> build/bdist.linux-loongarch64/wheel/./wxtbx copying build/lib/wxtbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./wxtbx creating build/bdist.linux-loongarch64/wheel/cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/xray copying build/lib/cctbx/xray/scatterer.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray copying build/lib/cctbx/xray/target_functors.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray creating build/bdist.linux-loongarch64/wheel/cctbx/xray/targets copying build/lib/cctbx/xray/targets/r1.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/targets copying build/lib/cctbx/xray/targets/tst_shelxl_wght_ls.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/targets copying build/lib/cctbx/xray/targets/tst_r1.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/targets copying build/lib/cctbx/xray/targets/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/targets copying build/lib/cctbx/xray/minimization.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray copying build/lib/cctbx/xray/structure.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray copying build/lib/cctbx/xray/ext.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray copying build/lib/cctbx/xray/weighting_schemes.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray copying build/lib/cctbx/xray/observation_types.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray creating build/bdist.linux-loongarch64/wheel/cctbx/xray/observations copying build/lib/cctbx/xray/observations/tst_observations.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/observations copying build/lib/cctbx/xray/observations/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/observations copying build/lib/cctbx/xray/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray creating build/bdist.linux-loongarch64/wheel/cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/from_scatterers_direct_parallel.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/manager.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/from_scatterers.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradient_flags.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/from_scatterers_fft.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/from_scatterers_direct.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradients_base.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/algorithm.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/global_counters.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradients_direct.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/misc.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradients_fft.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors copying build/lib/cctbx/xray/structure_factors/gradients.py -> build/bdist.linux-loongarch64/wheel/./cctbx/xray/structure_factors creating build/bdist.linux-loongarch64/wheel/cctbx/masks copying build/lib/cctbx/masks/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/masks copying build/lib/cctbx/r_free_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/command_line copying build/lib/cctbx/command_line/structure_factor_timings.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/subgroups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/samosa_scale.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/space_group_info.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/cod_select_and_pickle.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/cctbx_test_nightly.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/brehm_diederichs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/samosa_join.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/euclidean_model_matching.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/precession_view.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/version.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/qscore.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/segment_and_split_map.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/wavelength_units.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/auto_sharpen.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/find_reticular_twin_laws.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/diffuse.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/eltbx.show_fp_fdp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line copying build/lib/cctbx/command_line/form_factor_query.py -> build/bdist.linux-loongarch64/wheel/./cctbx/command_line creating build/bdist.linux-loongarch64/wheel/cctbx/sgtbx copying build/lib/cctbx/sgtbx/sys_abs_equiv.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/sub_lattice_tools.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/plane_groups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/reticular_pg_tools.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/subgroups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/harker.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/cosets.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx creating build/bdist.linux-loongarch64/wheel/cctbx/sgtbx/direct_space_asu creating build/bdist.linux-loongarch64/wheel/cctbx/sgtbx/direct_space_asu/proto copying build/lib/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu/proto copying build/lib/cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu/proto copying build/lib/cctbx/sgtbx/direct_space_asu/proto/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu/proto copying build/lib/cctbx/sgtbx/direct_space_asu/short_cuts.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/check_redundancies.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/reference_table.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/cut_plane.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/direct_space_asu/facet_analysis.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx/direct_space_asu copying build/lib/cctbx/sgtbx/rational_matrices_point_groups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/show_cosets.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/bravais_types.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/lattice_symmetry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/literal_description.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/reticular_twin_laws.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/pointgroup_tools.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx copying build/lib/cctbx/sgtbx/symbol_confidence.py -> build/bdist.linux-loongarch64/wheel/./cctbx/sgtbx creating build/bdist.linux-loongarch64/wheel/cctbx/covariance copying build/lib/cctbx/covariance/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/covariance creating build/bdist.linux-loongarch64/wheel/cctbx/geometry copying build/lib/cctbx/geometry/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry creating build/bdist.linux-loongarch64/wheel/cctbx/maptbx copying build/lib/cctbx/maptbx/refine_scales_errors.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_qscore.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_resolution_from_map_and_model.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/real_space_refinement_simple.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/resolution_from_map_and_model.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/servalcat_difference_map.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/box.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx creating build/bdist.linux-loongarch64/wheel/cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_qmap_02.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_example.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_vrm.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/compute_tables.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/bcr.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/qmap.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_vrm2.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_two_atoms.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_adp_refine.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/bcr/tst_table.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx/bcr copying build/lib/cctbx/maptbx/tst_mask.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_asymmetric_map.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_interpolation_2.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_real_space_refinement_simple.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/minimization.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/fsc_curve.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/prepare_map_for_docking.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_target_and_gradients.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/prepare_map_for_refinement.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_get_percentile_cutoffs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_MapPeakLocator.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/qscore.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_atom_curves.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_map_peak_3d_as_2d.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/segment_and_split_map.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_ccp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/mask.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_bcr.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/auto_sharpen.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/refine_sharpening.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/mem.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/map_symmetry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_interpolation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_loft.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx copying build/lib/cctbx/maptbx/tst_peak_volume_estimate.py -> build/bdist.linux-loongarch64/wheel/./cctbx/maptbx creating build/bdist.linux-loongarch64/wheel/cctbx/regression copying build/lib/cctbx/regression/tst_geometry_restraints_lbfgs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_crystal_asu_clusters.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_tidy_pickling.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_site_constraints.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_krivy_gruber.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_french_wilson.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_minimization.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_wavelength_units.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_special_op_simplifier.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_merge_equivalents.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_prepare_map_for_docking.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_show_cosets.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_web_change_basis.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_minimization_failure.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_create_models_or_maps.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_double_step_filtration.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_adp_constraints_cartesian.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_fast_gradients.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_f_model.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_adp_constraints.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_pair_asu_table.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_geometry_restraints.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray_target_functors.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_grm_modifications_rm.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_coordination_sequences.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_expand_to_p1.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_xray.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_crystal.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_mem_2.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_twin_target.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_statistics_graphs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sf_low_res_accuracy.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_find_best_cell.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_maptbx_structure_factors.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_data_manipulation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_subgroups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_reflection_statistics.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_connectivity_allsym.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sphericity.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_connectivity.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sampled_model_density.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_geometry_restraints_2.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_amplitude_normalisation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_maptbx_mask.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_statistics.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_fourier_transform_real_part_at_x.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_map_is_periodic.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_harker.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_diffuse.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_wilson_plot.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_pointgroup_tools.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_crystal_close_packing.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_weighting_schemes.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_loc_res.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_grm_pickling.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_r_free_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_grm_modifications.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_mem.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_denominators.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_fast_nv1995.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_adp_aniso_restraints.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_math_module.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_direct_space_asu.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_triplet_generator.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_lookup_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_match_bijvoet_mates.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_reciprocal_space_asu.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_fcalc_fft_stability.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_map_weights_for_symmetry_summation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_maptbx_box.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_emma.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_niggli_reduction_cpp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_direct_scaling.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_sgtbx_lattice_symmetry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_refine_xray_curvs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_change_basis.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_miller_fft_map.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression copying build/lib/cctbx/regression/tst_grouped_data.py -> build/bdist.linux-loongarch64/wheel/./cctbx/regression creating build/bdist.linux-loongarch64/wheel/cctbx/web copying build/lib/cctbx/web/dispatcher.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web creating build/bdist.linux-loongarch64/wheel/cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/jvx.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/jv_asu.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/guide_to_notation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/jv_index.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/asu_gallery/web_links.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web/asu_gallery copying build/lib/cctbx/web/change_setting.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/iotbx_cif_validate.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/frac_cart.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/explore_symmetry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/libtbx_help.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/change_hand.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/browse_settings.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/shelx.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/structure_factors_pdb.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/phase_o_phrenia.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/emma.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/multiple_cell.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/lattice_symmetry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/all_axes.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/wyckoff.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/cgi_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/replay.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/structure_factors.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/io_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web copying build/lib/cctbx/web/change_basis.py -> build/bdist.linux-loongarch64/wheel/./cctbx/web creating build/bdist.linux-loongarch64/wheel/cctbx/development copying build/lib/cctbx/development/debug_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/run_shelx.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/approx_amplitude_vs_resolution.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/make_cns_input.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/tst_cns_epsilon.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/make_settings.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/fmt_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/github.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/electron_density_sampling.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/create_models_or_maps.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/cns_density_modification.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/random_structure.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/tst_cns_hl.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/direct_or_fft.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/run_shelx76.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/space_group_option_parser.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/development/structure_factor_utils.py -> build/bdist.linux-loongarch64/wheel/./cctbx/development copying build/lib/cctbx/translation_search.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/macro_mol copying build/lib/cctbx/macro_mol/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/macro_mol copying build/lib/cctbx/macro_mol/rotation_parameters.py -> build/bdist.linux-loongarch64/wheel/./cctbx/macro_mol creating build/bdist.linux-loongarch64/wheel/cctbx/omz copying build/lib/cctbx/omz/eval_iso_vs_refined.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/tst_bfgs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/cod_refine.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/cod_select_and_pickle.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/dev.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/bfgs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/pdb_dev.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/tst_dev.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/tardy_adaptor.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz copying build/lib/cctbx/omz/cif_refine.py -> build/bdist.linux-loongarch64/wheel/./cctbx/omz creating build/bdist.linux-loongarch64/wheel/cctbx/examples copying build/lib/cctbx/examples/space_group_matrices.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/g_exp_i_alpha_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/site_symmetry_constraints.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/list_non_principal_continuous_shifts.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_phase_o_phrenia.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/adp_symmetry_constraints.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/unit_cell_minimizers.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/hirshfeld_test.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/sub_group_graph.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/random_puckers.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples creating build/bdist.linux-loongarch64/wheel/cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/u_star_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/site_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/sites_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_calculus/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/structure_factor_calculus copying build/lib/cctbx/examples/structure_factor_derivatives_4.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/fft_map_electron_density_around_atom.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/miller_transform.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_structure_factor_derivatives_4.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/view_fft_map.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/cr2o3_consistency_checks.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/structure_factor_derivatives_3.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/neutron_structure_factors.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_g_exp_i_alpha_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/f_model_example.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/find_sys_abs_equiv_space_groups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/miller_common_sets.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/change_hand_p31.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/cr2o3_primitive_cell.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/ccp4_map.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/site_symmetry_table.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_structure_factor_derivatives_3.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/g_exp_i_partial_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/lebedev_2005_perturbation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/unit_cell_refinement.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/analyze_adp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_space_subgroups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/random_f_calc.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_structure_factor_derivatives_2.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/phase_o_phrenia.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/find_distances_using_cpp_objects.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/exp_i_alpha_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/symops_530.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/all_axes.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/convert_ccp4_symop_lib.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/map_skewness.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/reduced_cell_two_folds.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/location_part.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/le_page_1982_vs_lebedev_2005.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/quartz_structure.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/space_subgroups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/steve_collins.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/maximum_subgroups.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/trigonal_r_vs_tetragonal_i.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/tst_exp_i_alpha_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/structure_factor_derivatives_2.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/structure_factor_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/examples/getting_started.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples creating build/bdist.linux-loongarch64/wheel/cctbx/examples/merging copying build/lib/cctbx/examples/merging/test1.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/test_levenberg_sparse.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/data_utilities.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/sigma_correction.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/task4.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging creating build/bdist.linux-loongarch64/wheel/cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/samosa/join.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/samosa/per_lattice_postrefinement.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/samosa/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/samosa/scale.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging/samosa copying build/lib/cctbx/examples/merging/show_results.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/tst_permutations.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/test_cc_half.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/merging/data_subset.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples/merging copying build/lib/cctbx/examples/tst_structure_factor_derivatives.py -> build/bdist.linux-loongarch64/wheel/./cctbx/examples copying build/lib/cctbx/euclidean_model_matching.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/adptbx.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/dmtbx.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/eltbx copying build/lib/cctbx/eltbx/attenuation_coefficient.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/e_scattering.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/henke.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/van_der_waals_radii.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx creating build/bdist.linux-loongarch64/wheel/cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/e_scattering_plots.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_approx.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/kissel_io.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_kissel.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_fits.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/rez_rez_grant.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/combine_fits.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/kissel_fits.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_cross_validation.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/itvc_section61_io.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/create_n_gaussian_raw_cpp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/format_gaussian_fits.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/development/hydrogen_plots.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/development copying build/lib/cctbx/eltbx/distance_based_connectivity.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx creating build/bdist.linux-loongarch64/wheel/cctbx/eltbx/xray_scattering copying build/lib/cctbx/eltbx/xray_scattering/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx/xray_scattering copying build/lib/cctbx/eltbx/read_custom_scattering_dict.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/chemical_elements.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/fp_fdp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/sasaki.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/icsd_radii.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/wavelengths.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/gaussian_fit.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/tiny_pse.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/covalent_radii.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/neutron.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/eltbx/formula.py -> build/bdist.linux-loongarch64/wheel/./cctbx/eltbx copying build/lib/cctbx/run_examples.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/math_module.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/french_wilson.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/neutron copying build/lib/cctbx/neutron/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/neutron copying build/lib/cctbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/miller copying build/lib/cctbx/miller/tst_reindexing.py -> build/bdist.linux-loongarch64/wheel/./cctbx/miller copying build/lib/cctbx/miller/reindexing.py -> build/bdist.linux-loongarch64/wheel/./cctbx/miller copying build/lib/cctbx/miller/tst_map_to_asu_isym.py -> build/bdist.linux-loongarch64/wheel/./cctbx/miller copying build/lib/cctbx/miller/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/miller copying build/lib/cctbx/miller/display.py -> build/bdist.linux-loongarch64/wheel/./cctbx/miller copying build/lib/cctbx/anharmonic.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/statistics.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/symmetry_search.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/crystal copying build/lib/cctbx/crystal/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/burzlaff_zimmermann_dewolff.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/direct_space_asu.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/tst_distance_based_connectivity.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/distance_based_connectivity.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/super_cell.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/coordination_sequences.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/tst_super_cell.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/close_packing.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/reindex.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal copying build/lib/cctbx/crystal/find_best_cell.py -> build/bdist.linux-loongarch64/wheel/./cctbx/crystal creating build/bdist.linux-loongarch64/wheel/cctbx/adp_restraints copying build/lib/cctbx/adp_restraints/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./cctbx/adp_restraints copying build/lib/cctbx/adp_restraints/energies.py -> build/bdist.linux-loongarch64/wheel/./cctbx/adp_restraints copying build/lib/cctbx/adp_restraints/flags.py -> build/bdist.linux-loongarch64/wheel/./cctbx/adp_restraints copying build/lib/cctbx/adp_restraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/adp_restraints creating build/bdist.linux-loongarch64/wheel/cctbx/array_family copying build/lib/cctbx/array_family/flex.py -> build/bdist.linux-loongarch64/wheel/./cctbx/array_family copying build/lib/cctbx/array_family/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/array_family creating build/bdist.linux-loongarch64/wheel/cctbx/source_generators creating build/bdist.linux-loongarch64/wheel/cctbx/source_generators/eltbx copying build/lib/cctbx/source_generators/eltbx/generate_sasaki_cpp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/source_generators/eltbx copying build/lib/cctbx/source_generators/eltbx/generate_henke_cpp.py -> build/bdist.linux-loongarch64/wheel/./cctbx/source_generators/eltbx copying build/lib/cctbx/source_generators/eltbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/source_generators/eltbx copying build/lib/cctbx/source_generators/flex_fwd_h.py -> build/bdist.linux-loongarch64/wheel/./cctbx/source_generators copying build/lib/cctbx/source_generators/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/source_generators creating build/bdist.linux-loongarch64/wheel/cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/lbfgs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/manager.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/linking_class.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/standard_cif_links.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/auto_linking_types.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_motif.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/base_geometry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/process_nonbonded_proxies.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/energies.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/flags.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_proxy_registry.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/tst_angle_derivs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/geometry_restraints/distance_least_squares.py -> build/bdist.linux-loongarch64/wheel/./cctbx/geometry_restraints copying build/lib/cctbx/multipolar.py -> build/bdist.linux-loongarch64/wheel/./cctbx copying build/lib/cctbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/cctbx/uctbx copying build/lib/cctbx/uctbx/reduction_base.py -> build/bdist.linux-loongarch64/wheel/./cctbx/uctbx creating build/bdist.linux-loongarch64/wheel/cctbx/uctbx/determine_unit_cell copying build/lib/cctbx/uctbx/determine_unit_cell/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/uctbx/determine_unit_cell copying build/lib/cctbx/uctbx/krivy_gruber_1976.py -> build/bdist.linux-loongarch64/wheel/./cctbx/uctbx copying build/lib/cctbx/uctbx/gruber_1973_table_1.py -> build/bdist.linux-loongarch64/wheel/./cctbx/uctbx copying build/lib/cctbx/uctbx/gruber_1973.py -> build/bdist.linux-loongarch64/wheel/./cctbx/uctbx copying build/lib/cctbx/uctbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/uctbx creating build/bdist.linux-loongarch64/wheel/cctbx/merging copying build/lib/cctbx/merging/brehm_diederichs.py -> build/bdist.linux-loongarch64/wheel/./cctbx/merging copying build/lib/cctbx/merging/__init__.py -> build/bdist.linux-loongarch64/wheel/./cctbx/merging copying build/lib/cctbx/crystal_orientation.py -> build/bdist.linux-loongarch64/wheel/./cctbx creating build/bdist.linux-loongarch64/wheel/iotbx copying build/lib/iotbx/map_model_manager.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/crystal_symmetry_from_any.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/fullprof copying build/lib/iotbx/fullprof/write_pcr.py -> build/bdist.linux-loongarch64/wheel/./iotbx/fullprof copying build/lib/iotbx/fullprof/read_pcr.py -> build/bdist.linux-loongarch64/wheel/./iotbx/fullprof copying build/lib/iotbx/fullprof/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/fullprof copying build/lib/iotbx/ranges.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/cif copying build/lib/iotbx/cif/cod_tools.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/model.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/restraints.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/builders.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/geometry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/citations.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/errors.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/restraint_file_merge.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/validation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/cif/crystal_symmetry_from_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cif copying build/lib/iotbx/merging_statistics.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/mtz copying build/lib/iotbx/mtz/tst_unmerged.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst_miller_dict.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst_dano.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/tst_extract_from_symmetry_lib.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/extract_from_symmetry_lib.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/mtz/crystal_symmetry_from_mtz.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mtz copying build/lib/iotbx/phases.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/dsn6 copying build/lib/iotbx/dsn6/tst.py -> build/bdist.linux-loongarch64/wheel/./iotbx/dsn6 copying build/lib/iotbx/dsn6/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/dsn6 copying build/lib/iotbx/csv_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/scalepack copying build/lib/iotbx/scalepack/merge.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/no_merge_original_index.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/crystal_symmetry_from_hkl.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/space_group_dictionary.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/tst_merge.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/scalepack/tst_no_merge_original_index.py -> build/bdist.linux-loongarch64/wheel/./iotbx/scalepack copying build/lib/iotbx/option_parser.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/command_line copying build/lib/iotbx/command_line/crystal_symmetry_from_any.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/show_distances.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.as_xray_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/merging_statistics.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cns.sdb_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/r_free_flags_accumulation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/sort_atoms.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.hierarchy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_labels_diff.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.superpose_atoms_by_name.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cif.as_miller_arrays.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/blast_pdb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/flip_symmetric_amino_acids.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.box_around_molecule.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cif.as_xray_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_labels_comparison.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cns.transfer_crystal_symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/mtz_as_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.link_as_geometry_restraints_edits.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reflection_file_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.join_fragment_files.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.insert_scale_records.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/mtrix_reconstruction.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/build_phil_cache.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/get_pubmed_citation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cbf_read.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/show_systematic_absences.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/unique_with_biomt.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_split_models.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_as_fasta.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/dano_as_amplitudes.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/csv_as_mtz.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/export_scalepack_unmerged.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_show_connectivity.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cif_as_pdb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/biomt_reconstruction.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reflection_file_editor.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_cif_conversion.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/emma.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/dtrek.to_cns.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reflection_statistics.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_get_citation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/explore_metric_symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/lattice_symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_add_conformations.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/r_free_flags_as_cns.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/french_wilson.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/file_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/shelx.dump_as_python.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.b_factor_stats.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/r_free_flags_completion_simple.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/shelx.as_xray_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/mtz.dump.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/simple_map_coefficients.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/phil.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/patterson_map.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/poscar_as_xray_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/shelx.as_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.superpose_centers_of_mass.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/split_data_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cif.validate.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/symmetry_search.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reindex.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/reflection_file_converter.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/xplor.map.show_summary.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cns.reflection_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/distance_least_squares.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/effective_resolution.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/cns_as_mtz.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_as_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb.print_sequence.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/detector_image_as_png.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line copying build/lib/iotbx/command_line/pdb_remediator.py -> build/bdist.linux-loongarch64/wheel/./iotbx/command_line creating build/bdist.linux-loongarch64/wheel/iotbx/file_io copying build/lib/iotbx/file_io/reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/file_io copying build/lib/iotbx/file_io/_maps.py -> build/bdist.linux-loongarch64/wheel/./iotbx/file_io copying build/lib/iotbx/file_io/detection.py -> build/bdist.linux-loongarch64/wheel/./iotbx/file_io copying build/lib/iotbx/file_io/text_detection.py -> build/bdist.linux-loongarch64/wheel/./iotbx/file_io copying build/lib/iotbx/file_io/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/file_io creating build/bdist.linux-loongarch64/wheel/iotbx/data_manager copying build/lib/iotbx/data_manager/yaml.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/sequence.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/model.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/json.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/real_map.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/ncs_spec.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/common.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/miller_array.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/map_coefficients.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/restraint.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/phil.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/data_manager/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/data_manager copying build/lib/iotbx/table_one.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/regression copying build/lib/iotbx/regression/tst_all_chain_ids.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_manager_wrapping.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_fetch.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_simple_parser.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_resname_2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_file_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_cli_parser.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_show_systematic_absences.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_link_records.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_miller_sort_asu.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_bioinformatics.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_extract_xtal_data.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_poscar.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reindex.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_lattice_symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_cif_as_pdb_1atom.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_csv_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_crystal_symmetry_from_any.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdbx_mmcif_tutorial.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_manager.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_restraints_merge.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_split_models.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_tls_from_map_8.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_tools.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mmcif_input.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_cif_1.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_model_sharpening_5.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_generate_n_char_string.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_merging_statistics.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_resname_4.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_manager_2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_resname_3.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_cif_inputs.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_xray_scale.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression creating build/bdist.linux-loongarch64/wheel/iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_search_shortcut_1.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_without_validation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_input.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_reordered_chains.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_search_broken_chain.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_user_selections.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_input_preserves_iseqs.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/ncs/tst_ncs_search_ligs.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression/ncs copying build/lib/iotbx/regression/tst_simple_map_coefficients.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reflection_statistics.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_as_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_cif_cells.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mmcif_segids.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_pdb_as_fasta.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_export_scalepack_unmerged.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mmcif_multimodel.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_atom_selections_10k.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_sort_atoms.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_pdb_v3.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mmcif_to_from_hierarchy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_add_conformations.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_id_str.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_occupancies_rounding.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_box_around_molecule.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_split_data_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reflection_file_editor.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_phil.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_wildcard.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_chain_ids_1.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_file_io.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mrc_io.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_patterson.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_local_resolution_10.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_external_sharpening_7.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_long_resname_1.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_call_consistency.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_data_manager.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_3.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_4.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_group_rounding.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_examples.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_map_model_manager_2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reflection_file_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_phases.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_reflection_file_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_text_detection.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_mtz_as_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_altlocs.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_data_plots.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_copy_select.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/regression/tst_selected_hierarchy_flip.py -> build/bdist.linux-loongarch64/wheel/./iotbx/regression copying build/lib/iotbx/symmetry.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/pdb copying build/lib/iotbx/pdb/tst_mmcif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/nucleic_acid_codes.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_hierarchy_atom_sort.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/crystal_symmetry_from_pdb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_atom_selection_string.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_read_mtrix_records_from_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/fetch.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_hierarchy_flip_symmetric_2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/rcsb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/extract_rfactors_resolutions_sigma.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_secondary_structure_2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/amino_acid_codes.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_rna_dna_atom_names.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/atom_name_interpretation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/experiment_type.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_atom_name_interpretation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/mmcif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/hybrid_36.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/modified_aa_names.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_input_pickling.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/records.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/remark_290_interpretation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/secondary_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/aa_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/cryst1_interpretation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/web_service_api.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/download.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_hierarchy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/xray_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/rna_dna_detection.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/misc_records_output.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/remark_2_interpretation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/forward_compatible_pdb_cif_conversion.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/modified_rna_dna_names.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_tls.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/atom_selection.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/remark_3_interpretation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_atom_selection.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_mmcif_hierarchy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/pdbe.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_secondary_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/pdb_v3_cif_conversion.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb creating build/bdist.linux-loongarch64/wheel/iotbx/pdb/remediation copying build/lib/iotbx/pdb/remediation/remediator.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb/remediation copying build/lib/iotbx/pdb/remediation/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb/remediation copying build/lib/iotbx/pdb/remediation/tst_remediator.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb/remediation copying build/lib/iotbx/pdb/tst_pdb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/hierarchy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_hierarchy_flip_symmetric.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb copying build/lib/iotbx/pdb/tst_mmcif_hierarchy_2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/pdb creating build/bdist.linux-loongarch64/wheel/iotbx/xds copying build/lib/iotbx/xds/xds_cbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/gain_cbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/xds_inp.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/xparm.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/integrate_hkl.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/crystal_symmetry_from_hkl.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/spot_xds.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/read_ascii.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/geometry.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/blank_cbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds copying build/lib/iotbx/xds/correction.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xds creating build/bdist.linux-loongarch64/wheel/iotbx/detectors copying build/lib/iotbx/detectors/raxis_nonsquare.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/tst_py_cbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/tst_detectors.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/generic_detector.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/pilatus_minicbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/edf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/cspad_detector_formats.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/image_from_http_request.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/raxis.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/raxisbase.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/bruker.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/adsc.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/npy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/active_area_filter.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/url_support.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/macscience.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/test_raxis2.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/detectorbase.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/beam_center_convention.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/noir.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/tst_adsc.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/mar.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/tst_debug_write.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/saturn.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors creating build/bdist.linux-loongarch64/wheel/iotbx/detectors/context copying build/lib/iotbx/detectors/context/spot_xy_convention.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/config_detector.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/camera_convention.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/endstation.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/endstation_max_iv_trial.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/context/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/context copying build/lib/iotbx/detectors/adsc_module.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/eiger_minicbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/eiger.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors creating build/bdist.linux-loongarch64/wheel/iotbx/detectors/util copying build/lib/iotbx/detectors/util/filters.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/util copying build/lib/iotbx/detectors/util/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors/util copying build/lib/iotbx/detectors/tst_cbf_comp_read_meth.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/dtrek.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/cbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/hamamatsu.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/pilatus_slice.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/marIP.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/test_mar.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/detectors/adsc_minicbf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/detectors copying build/lib/iotbx/map_manager.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/map_tools.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/PrettyPrint copying build/lib/iotbx/PrettyPrint/tables.py -> build/bdist.linux-loongarch64/wheel/./iotbx/PrettyPrint copying build/lib/iotbx/PrettyPrint/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/PrettyPrint creating build/bdist.linux-loongarch64/wheel/iotbx/kriber copying build/lib/iotbx/kriber/strudat.py -> build/bdist.linux-loongarch64/wheel/./iotbx/kriber copying build/lib/iotbx/kriber/tst_strudat.py -> build/bdist.linux-loongarch64/wheel/./iotbx/kriber copying build/lib/iotbx/kriber/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/kriber creating build/bdist.linux-loongarch64/wheel/iotbx/ccp4_map copying build/lib/iotbx/ccp4_map/tst.py -> build/bdist.linux-loongarch64/wheel/./iotbx/ccp4_map copying build/lib/iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py -> build/bdist.linux-loongarch64/wheel/./iotbx/ccp4_map copying build/lib/iotbx/ccp4_map/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/ccp4_map copying build/lib/iotbx/simple_parser.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/xplor copying build/lib/iotbx/xplor/tst_xplormap.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xplor copying build/lib/iotbx/xplor/ext.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xplor copying build/lib/iotbx/xplor/map.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xplor copying build/lib/iotbx/xplor/crystal_symmetry_from_map.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xplor copying build/lib/iotbx/xplor/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/xplor copying build/lib/iotbx/reflection_file_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/mtrix_biomt.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/reflection_file_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/examples copying build/lib/iotbx/examples/libtbx_phil_examples.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/prepare_model_for_rsr.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_shake.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/recalculate_phenix_refine_r_factors.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/direct_methods_light.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_split_chains.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdbx_mmcif_tutorial.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/tst_mtz_free_flipper.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/mtz_convert_free_to_work.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_tardy_conf_sampling_simple.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/mtz_free_flipper.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_symmetry_copies.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_hierarchy.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples creating build/bdist.linux-loongarch64/wheel/iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/tst.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v3_better.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v2_simple.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples/pdb_truncate_to_ala copying build/lib/iotbx/examples/shelx_latt_sym_to_space_group_symbol.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples copying build/lib/iotbx/examples/pdb_to_map_simple.py -> build/bdist.linux-loongarch64/wheel/./iotbx/examples creating build/bdist.linux-loongarch64/wheel/iotbx/dtrek copying build/lib/iotbx/dtrek/reflnlist_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/dtrek copying build/lib/iotbx/dtrek/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/dtrek copying build/lib/iotbx/dtrek/crystal_symmetry_from_ref.py -> build/bdist.linux-loongarch64/wheel/./iotbx/dtrek copying build/lib/iotbx/dtrek/dtrek_symmetry_dict.py -> build/bdist.linux-loongarch64/wheel/./iotbx/dtrek copying build/lib/iotbx/extract_xtal_data.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/ebi_wu_blast_xml.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/pdb_info.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/homologues.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/xmlbuild.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/ncbi_blast_xml.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/pubmed.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/alignment_as_hsearch.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/local_blast.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics copying build/lib/iotbx/bioinformatics/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/bioinformatics creating build/bdist.linux-loongarch64/wheel/iotbx/ncs copying build/lib/iotbx/ncs/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/ncs copying build/lib/iotbx/wildcard.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/cns copying build/lib/iotbx/cns/crystal_symmetry_from_inp.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/crystal_symmetry_from_sdb.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/crystal_symmetry_utils.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/sdb_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/sdb_writer.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/index_fobs_sigma_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/miller_array.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/reflection_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/tst_cns.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/space_group_symbols.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/xray_structure.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/cns/pdb_remarks.py -> build/bdist.linux-loongarch64/wheel/./iotbx/cns copying build/lib/iotbx/pymol.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/builders.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/logfiles.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/format.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/cif_mtz_data_labels.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/cli_parser.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/reflection_file_editor.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/programs copying build/lib/iotbx/programs/unique_with_biomt.py -> build/bdist.linux-loongarch64/wheel/./iotbx/programs copying build/lib/iotbx/programs/box_around_molecule.py -> build/bdist.linux-loongarch64/wheel/./iotbx/programs copying build/lib/iotbx/programs/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/programs copying build/lib/iotbx/programs/split_data_cif.py -> build/bdist.linux-loongarch64/wheel/./iotbx/programs creating build/bdist.linux-loongarch64/wheel/iotbx/solve copying build/lib/iotbx/solve/crystal_symmetry_from_inp.py -> build/bdist.linux-loongarch64/wheel/./iotbx/solve copying build/lib/iotbx/solve/fpfm_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx/solve copying build/lib/iotbx/solve/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/solve copying build/lib/iotbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/shelx copying build/lib/iotbx/shelx/parsers.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/hklf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tst_lex_parse_build.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tokens.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/fcf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tst_hklf.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/writer.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tst_fvar_encoding.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/lexer.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/tst_writer.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/write_ins.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/errors.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/crystal_symmetry_from_ins.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/shelx/fvar_encoding.py -> build/bdist.linux-loongarch64/wheel/./iotbx/shelx copying build/lib/iotbx/file_reader.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/builders_depending_on_smtbx.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/mrcfile copying build/lib/iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mrcfile copying build/lib/iotbx/mrcfile/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/mrcfile copying build/lib/iotbx/phil.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/data_plots.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/poscar.py -> build/bdist.linux-loongarch64/wheel/./iotbx copying build/lib/iotbx/reflection_file_converter.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/iotbx/gui_tools copying build/lib/iotbx/gui_tools/tst.py -> build/bdist.linux-loongarch64/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/cif_conversions.py -> build/bdist.linux-loongarch64/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/__init__.py -> build/bdist.linux-loongarch64/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/import_data_and_flags.py -> build/bdist.linux-loongarch64/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/models.py -> build/bdist.linux-loongarch64/wheel/./iotbx/gui_tools copying build/lib/iotbx/gui_tools/reflections.py -> build/bdist.linux-loongarch64/wheel/./iotbx/gui_tools copying build/lib/iotbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./iotbx creating build/bdist.linux-loongarch64/wheel/annlib_adaptbx creating build/bdist.linux-loongarch64/wheel/annlib_adaptbx/annlib_adaptbx copying build/lib/annlib_adaptbx/annlib_adaptbx/self_match.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx/annlib_adaptbx copying build/lib/annlib_adaptbx/annlib_adaptbx/sample.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx/annlib_adaptbx copying build/lib/annlib_adaptbx/annlib_adaptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx/annlib_adaptbx copying build/lib/annlib_adaptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx creating build/bdist.linux-loongarch64/wheel/annlib_adaptbx/source_generators copying build/lib/annlib_adaptbx/source_generators/generate_all.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx/source_generators copying build/lib/annlib_adaptbx/source_generators/__init__.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx/source_generators copying build/lib/annlib_adaptbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./annlib_adaptbx creating build/bdist.linux-loongarch64/wheel/spotfinder creating build/bdist.linux-loongarch64/wheel/spotfinder/applications copying build/lib/spotfinder/applications/practical_heuristics.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications copying build/lib/spotfinder/applications/stats_distl.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications copying build/lib/spotfinder/applications/image_viewer.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications creating build/bdist.linux-loongarch64/wheel/spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/method2_resolution.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/ice2.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/spotreporter.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/heuristic_tbx copying build/lib/spotfinder/applications/heuristic_tbx/ice_nztt.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/heuristic_tbx creating build/bdist.linux-loongarch64/wheel/spotfinder/applications/xfel copying build/lib/spotfinder/applications/xfel/cxi_run3.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/xfel copying build/lib/spotfinder/applications/xfel/cxi_phil.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/xfel copying build/lib/spotfinder/applications/xfel/correction_vector_plot.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/xfel copying build/lib/spotfinder/applications/xfel/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications/xfel copying build/lib/spotfinder/applications/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications copying build/lib/spotfinder/applications/wrappers.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications copying build/lib/spotfinder/applications/signal_strength.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/applications creating build/bdist.linux-loongarch64/wheel/spotfinder/servers copying build/lib/spotfinder/servers/specific_client_example.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/general_client_example.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/thin_client.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/spotfinder_server_read_file.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/apache.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/bcsb_client_example.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/multipart_encoder.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/apache_bcsb.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/mp_spotfinder_server_is_alive.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/mp_spotfinder_server_read_file.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/pilatus_client.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/adsc_client.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/spotfinder_server_client_push.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/apache_utils.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers copying build/lib/spotfinder/servers/apache_dials.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/servers creating build/bdist.linux-loongarch64/wheel/spotfinder/command_line copying build/lib/spotfinder/command_line/thin_client.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/image_viewer.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/mp_spotfinder_server_read_file.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/find_active_area.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/sweep_strength.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/command_line/signal_strength.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/command_line copying build/lib/spotfinder/exception.py -> build/bdist.linux-loongarch64/wheel/./spotfinder creating build/bdist.linux-loongarch64/wheel/spotfinder/dxtbx_toolbox copying build/lib/spotfinder/dxtbx_toolbox/practical_heuristics.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/dxtbx_toolbox copying build/lib/spotfinder/dxtbx_toolbox/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/dxtbx_toolbox creating build/bdist.linux-loongarch64/wheel/spotfinder/core_toolbox copying build/lib/spotfinder/core_toolbox/close_spots_detail.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/core_toolbox copying build/lib/spotfinder/core_toolbox/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/core_toolbox creating build/bdist.linux-loongarch64/wheel/spotfinder/diffraction copying build/lib/spotfinder/diffraction/imagefiles.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/diffraction copying build/lib/spotfinder/diffraction/geometry.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/diffraction copying build/lib/spotfinder/diffraction/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/diffraction copying build/lib/spotfinder/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder creating build/bdist.linux-loongarch64/wheel/spotfinder/math_support copying build/lib/spotfinder/math_support/sphere_formulae.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/math_support copying build/lib/spotfinder/math_support/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/math_support creating build/bdist.linux-loongarch64/wheel/spotfinder/array_family copying build/lib/spotfinder/array_family/flex.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/array_family copying build/lib/spotfinder/array_family/__init__.py -> build/bdist.linux-loongarch64/wheel/./spotfinder/array_family copying build/lib/spotfinder/run_tests.py -> build/bdist.linux-loongarch64/wheel/./spotfinder creating build/bdist.linux-loongarch64/wheel/rstbx creating build/bdist.linux-loongarch64/wheel/rstbx/apps copying build/lib/rstbx/apps/spot_markup.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps creating build/bdist.linux-loongarch64/wheel/rstbx/apps/stills copying build/lib/rstbx/apps/stills/dials_refinement_preceding_integration.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/deltapsi_refinement_preceding_integration.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/util.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/simple_integration.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/stills/stills_integration.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps/stills copying build/lib/rstbx/apps/dual_resolution_helpers.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps copying build/lib/rstbx/apps/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps copying build/lib/rstbx/apps/slip_helpers.py -> build/bdist.linux-loongarch64/wheel/./rstbx/apps creating build/bdist.linux-loongarch64/wheel/rstbx/simulation copying build/lib/rstbx/simulation/constants.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simulation copying build/lib/rstbx/simulation/sim_pdf.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simulation copying build/lib/rstbx/simulation/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simulation copying build/lib/rstbx/simulation/tst_xfel1_simple.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simulation copying build/lib/rstbx/simulation/sim_utils.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simulation creating build/bdist.linux-loongarch64/wheel/rstbx/phil copying build/lib/rstbx/phil/scope.py -> build/bdist.linux-loongarch64/wheel/./rstbx/phil copying build/lib/rstbx/phil/phil_preferences.py -> build/bdist.linux-loongarch64/wheel/./rstbx/phil copying build/lib/rstbx/phil/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/phil copying build/lib/rstbx/phil/preferences.py -> build/bdist.linux-loongarch64/wheel/./rstbx/phil creating build/bdist.linux-loongarch64/wheel/rstbx/outlier_spots copying build/lib/rstbx/outlier_spots/fit_distribution.py -> build/bdist.linux-loongarch64/wheel/./rstbx/outlier_spots copying build/lib/rstbx/outlier_spots/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/outlier_spots creating build/bdist.linux-loongarch64/wheel/rstbx/command_line copying build/lib/rstbx/command_line/example_viewer.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/index.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/simage.explore_completeness.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/simage.create.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/slip_viewer.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/viewer.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/simage.solver.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line copying build/lib/rstbx/command_line/simage.wx_display.py -> build/bdist.linux-loongarch64/wheel/./rstbx/command_line creating build/bdist.linux-loongarch64/wheel/rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/ring_frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/pyslip.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/example_frame_plugin_hidden.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/tile_generation.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/score_frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/slip_viewer_image_factory.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/uc_frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/slip_display.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer copying build/lib/rstbx/slip_viewer/calibration_frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/slip_viewer creating build/bdist.linux-loongarch64/wheel/rstbx/detectors copying build/lib/rstbx/detectors/silicon.py -> build/bdist.linux-loongarch64/wheel/./rstbx/detectors copying build/lib/rstbx/detectors/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/detectors creating build/bdist.linux-loongarch64/wheel/rstbx/symmetry copying build/lib/rstbx/symmetry/sgtbx_adaptor.py -> build/bdist.linux-loongarch64/wheel/./rstbx/symmetry creating build/bdist.linux-loongarch64/wheel/rstbx/symmetry/constraints copying build/lib/rstbx/symmetry/constraints/parameter_reduction.py -> build/bdist.linux-loongarch64/wheel/./rstbx/symmetry/constraints copying build/lib/rstbx/symmetry/constraints/g_gradients.py -> build/bdist.linux-loongarch64/wheel/./rstbx/symmetry/constraints copying build/lib/rstbx/symmetry/constraints/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/symmetry/constraints copying build/lib/rstbx/symmetry/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/symmetry copying build/lib/rstbx/symmetry/subgroup.py -> build/bdist.linux-loongarch64/wheel/./rstbx/symmetry creating build/bdist.linux-loongarch64/wheel/rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2_validate.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2_positions.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2a.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2_positions_idx.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/compare_mosflm_xds.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/uc1_2.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx creating build/bdist.linux-loongarch64/wheel/rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/detector_model/detector.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/detector_model/instrument_specifics.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/detector_model/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/detector_model/tst_detector_model.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx/detector_model copying build/lib/rstbx/bpcx/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx copying build/lib/rstbx/bpcx/ersatz_misset.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bpcx creating build/bdist.linux-loongarch64/wheel/rstbx/dps_core copying build/lib/rstbx/dps_core/cell_assessment.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/tst_iotbx_converter.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/basis_choice.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/lepage.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/zuoreduction.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/constrainment.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core copying build/lib/rstbx/dps_core/sampling.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dps_core creating build/bdist.linux-loongarch64/wheel/rstbx/indexing_api copying build/lib/rstbx/indexing_api/outlier_procedure.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/lattice.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/nearest_neighbor.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/force_cell.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/basis_choice.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/tools.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/test_dps.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/outlier_detection.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api copying build/lib/rstbx/indexing_api/sampling.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing_api creating build/bdist.linux-loongarch64/wheel/rstbx/indexing copying build/lib/rstbx/indexing/tst_auto_monoscan.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing copying build/lib/rstbx/indexing/do_index.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing copying build/lib/rstbx/indexing/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing copying build/lib/rstbx/indexing/tst_dataset1.py -> build/bdist.linux-loongarch64/wheel/./rstbx/indexing creating build/bdist.linux-loongarch64/wheel/rstbx/new_horizons copying build/lib/rstbx/new_horizons/index.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/speckfinder.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/stats_index.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/spot_shape.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/pixel_spread.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons copying build/lib/rstbx/new_horizons/oscillation_shots.py -> build/bdist.linux-loongarch64/wheel/./rstbx/new_horizons creating build/bdist.linux-loongarch64/wheel/rstbx/diffraction creating build/bdist.linux-loongarch64/wheel/rstbx/diffraction/fastbragg copying build/lib/rstbx/diffraction/fastbragg/tst_bragg_minimal.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction/fastbragg copying build/lib/rstbx/diffraction/fastbragg/tst_utils_clustering.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction/fastbragg copying build/lib/rstbx/diffraction/fastbragg/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction/fastbragg copying build/lib/rstbx/diffraction/tst_ewald_sphere.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction copying build/lib/rstbx/diffraction/tst_partial_derivatives.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction copying build/lib/rstbx/diffraction/tst_predict.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction copying build/lib/rstbx/diffraction/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/diffraction copying build/lib/rstbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx creating build/bdist.linux-loongarch64/wheel/rstbx/simage copying build/lib/rstbx/simage/run_spotfinder.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/refine_uc_cr.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/integrate_crude.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/tst.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/run_labelit_index.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/explore_completeness.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/create.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/solver.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage copying build/lib/rstbx/simage/wx_display.py -> build/bdist.linux-loongarch64/wheel/./rstbx/simage creating build/bdist.linux-loongarch64/wheel/rstbx/viewer copying build/lib/rstbx/viewer/results_base.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/dataset.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/processing.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/tst.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/drivers.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/pixels3d.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/calibration.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/controls.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/spotfinder_wrap.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/indexing.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/integration.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/display.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/calibration_frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer copying build/lib/rstbx/viewer/spotfinder_frame.py -> build/bdist.linux-loongarch64/wheel/./rstbx/viewer creating build/bdist.linux-loongarch64/wheel/rstbx/array_family copying build/lib/rstbx/array_family/flex.py -> build/bdist.linux-loongarch64/wheel/./rstbx/array_family copying build/lib/rstbx/array_family/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/array_family copying build/lib/rstbx/utils.py -> build/bdist.linux-loongarch64/wheel/./rstbx creating build/bdist.linux-loongarch64/wheel/rstbx/cftbx copying build/lib/rstbx/cftbx/coordinate_frame_converter.py -> build/bdist.linux-loongarch64/wheel/./rstbx/cftbx copying build/lib/rstbx/cftbx/coordinate_frame_helpers.py -> build/bdist.linux-loongarch64/wheel/./rstbx/cftbx copying build/lib/rstbx/cftbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/cftbx copying build/lib/rstbx/cftbx/tst_coordinate_frame_converter.py -> build/bdist.linux-loongarch64/wheel/./rstbx/cftbx creating build/bdist.linux-loongarch64/wheel/rstbx/sublattice_support copying build/lib/rstbx/sublattice_support/tst_sublattice.py -> build/bdist.linux-loongarch64/wheel/./rstbx/sublattice_support copying build/lib/rstbx/sublattice_support/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/sublattice_support copying build/lib/rstbx/sublattice_support/change_basis.py -> build/bdist.linux-loongarch64/wheel/./rstbx/sublattice_support creating build/bdist.linux-loongarch64/wheel/rstbx/dials_core copying build/lib/rstbx/dials_core/integration_core.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dials_core copying build/lib/rstbx/dials_core/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/dials_core copying build/lib/rstbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./rstbx creating build/bdist.linux-loongarch64/wheel/rstbx/bandpass copying build/lib/rstbx/bandpass/simulated_annealing.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bandpass copying build/lib/rstbx/bandpass/__init__.py -> build/bdist.linux-loongarch64/wheel/./rstbx/bandpass creating build/bdist.linux-loongarch64/wheel/cma_es copying build/lib/cma_es/cma_es_interface.py -> build/bdist.linux-loongarch64/wheel/./cma_es copying build/lib/cma_es/tst_cma_es.py -> build/bdist.linux-loongarch64/wheel/./cma_es copying build/lib/cma_es/__init__.py -> build/bdist.linux-loongarch64/wheel/./cma_es copying build/lib/cma_es/run_tests.py -> build/bdist.linux-loongarch64/wheel/./cma_es creating build/bdist.linux-loongarch64/wheel/cbflib_adaptbx creating build/bdist.linux-loongarch64/wheel/cbflib_adaptbx/command_line copying build/lib/cbflib_adaptbx/command_line/dump.py -> build/bdist.linux-loongarch64/wheel/./cbflib_adaptbx/command_line copying build/lib/cbflib_adaptbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./cbflib_adaptbx/command_line copying build/lib/cbflib_adaptbx/copy_files.py -> build/bdist.linux-loongarch64/wheel/./cbflib_adaptbx copying build/lib/cbflib_adaptbx/exercise_compression.py -> build/bdist.linux-loongarch64/wheel/./cbflib_adaptbx copying build/lib/cbflib_adaptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./cbflib_adaptbx copying build/lib/cbflib_adaptbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./cbflib_adaptbx creating build/bdist.linux-loongarch64/wheel/libtbx copying build/lib/libtbx/containers.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/jobs copying build/lib/libtbx/jobs/manager.py -> build/bdist.linux-loongarch64/wheel/./libtbx/jobs creating build/bdist.linux-loongarch64/wheel/libtbx/jobs/backends copying build/lib/libtbx/jobs/backends/base.py -> build/bdist.linux-loongarch64/wheel/./libtbx/jobs/backends copying build/lib/libtbx/jobs/backends/batch.py -> build/bdist.linux-loongarch64/wheel/./libtbx/jobs/backends copying build/lib/libtbx/jobs/backends/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/jobs/backends copying build/lib/libtbx/jobs/backends/local.py -> build/bdist.linux-loongarch64/wheel/./libtbx/jobs/backends copying build/lib/libtbx/jobs/backends/slurm.py -> build/bdist.linux-loongarch64/wheel/./libtbx/jobs/backends copying build/lib/libtbx/jobs/tst_slurm.py -> build/bdist.linux-loongarch64/wheel/./libtbx/jobs copying build/lib/libtbx/jobs/tst_batch.py -> build/bdist.linux-loongarch64/wheel/./libtbx/jobs copying build/lib/libtbx/jobs/tst_manager.py -> build/bdist.linux-loongarch64/wheel/./libtbx/jobs copying build/lib/libtbx/jobs/fake_slurm.py -> build/bdist.linux-loongarch64/wheel/./libtbx/jobs copying build/lib/libtbx/jobs/tst_local.py -> build/bdist.linux-loongarch64/wheel/./libtbx/jobs copying build/lib/libtbx/jobs/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/jobs copying build/lib/libtbx/pyplot.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_run_tests_parallel_unique_dirs.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_word_index_generator.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/assert_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_fully_buffered_timeout.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/cpp_function_name.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/program_template.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_python_code_parsing.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/phil copying build/lib/libtbx/phil/interface.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/tokenizer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/command_line.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/tst.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/tst_experimental.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/experimental.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/gui_objects.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/parser.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/tst_tokenizer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/phil/tst_interface.py -> build/bdist.linux-loongarch64/wheel/./libtbx/phil copying build/lib/libtbx/tst_easy_mp_multicore.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/clear_paths.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/console_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/start_print_trace.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_representation.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_citations.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/complex_math.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_t96_roster.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/runtime_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_topological_sort.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/word_index_generator.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/dlite.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/option_parser.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/thread_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/command_line copying build/lib/libtbx/command_line/show_module_dependencies.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/start_binary_bundle.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/env_run.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_env.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/prime_factors_of.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_python_sys_executable.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_host_and_user.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_tests.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/clear_paths.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/make_sphinx_html.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/sge_available_slots.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_not_show_diff.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_include_paths.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_build_options.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_dist_paths.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/add_docstrings_with_ai.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/printenv.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_but_no_repr.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/line_count.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/start_process.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/extract_code_from_txt.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/nequal.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/import_all_python.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/wait_for_file.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_commands.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/remove_tree.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_files.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/path_utility.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_numpy_version.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_unused_imports.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/check_libcpp.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/parallel_simple.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/cctbx_chunk.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_stdin_contains_strings.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_repository_paths.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/scons.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_mac_app.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/list_source_files_sorted_by_size.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_full_command_path.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/list_files.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/run_tests_parallel.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_windows_exe.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/epydoc_run.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_number_of_processors.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_unzipsfx.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/remote_processing.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/sphinx_build.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_pdb_mmcif_problems.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/import_all_ext.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_reserved_names.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/raise_exception_for_testing.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_bin_path.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_untested.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_python_dependencies.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/bundle_as_exe.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_selfx.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_pythonpath.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/resource_monitor_plot.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_date_and_time.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/make_dist.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_in_repositories.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_cctbx_bundle_for_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_line_count.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_all_on_path.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/py_compile_all.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/analyse_code_comments.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/install_conda.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/clean_clutter.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/phil.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_under_build.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/easy_qsub.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/bootstrap.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/help.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/ipython_shell_start.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/create_install_script_bat.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_stdin_ends_with.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/git_avoid_merges.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/remove_unused_imports.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/install.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_lib_path.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_old_style_classes.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/reindent.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_clutter.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/run_pickled_function.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/list_modules.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_build_path.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/find_unused_imports_crude.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_environ_usage.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/sge_qstat_counts.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_variable_names.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/assert_stdin.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/dtrace.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/any2unix.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/show_numeric_version.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line copying build/lib/libtbx/command_line/seconds_since_the_epoch.py -> build/bdist.linux-loongarch64/wheel/./libtbx/command_line creating build/bdist.linux-loongarch64/wheel/libtbx/sphinx copying build/lib/libtbx/sphinx/pubmed.py -> build/bdist.linux-loongarch64/wheel/./libtbx/sphinx copying build/lib/libtbx/sphinx/python_string.py -> build/bdist.linux-loongarch64/wheel/./libtbx/sphinx copying build/lib/libtbx/sphinx/phil.py -> build/bdist.linux-loongarch64/wheel/./libtbx/sphinx copying build/lib/libtbx/sphinx/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/sphinx creating build/bdist.linux-loongarch64/wheel/libtbx/scheduling copying build/lib/libtbx/scheduling/mp_handler.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/job_scheduler.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/shared_resource.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/result.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/thread_handler.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/socket_queue.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/process_pool.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/file_queue.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/stacktrace.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/mainthread.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/parallel_for.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/philgen.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/scheduling/cluster_handler.py -> build/bdist.linux-loongarch64/wheel/./libtbx/scheduling copying build/lib/libtbx/cli.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/easy_run.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_runtime_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/subprocess_with_fixes.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_guided_coding.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/object_oriented_patterns.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/bundle copying build/lib/libtbx/bundle/copy_all.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/copy_runtime_sources.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/install_bat.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/copy_build_libtbx.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/bundle/install_csh.py -> build/bdist.linux-loongarch64/wheel/./libtbx/bundle copying build/lib/libtbx/easy_mp.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/program_utils copying build/lib/libtbx/program_utils/result.py -> build/bdist.linux-loongarch64/wheel/./libtbx/program_utils copying build/lib/libtbx/program_utils/statistics_info.py -> build/bdist.linux-loongarch64/wheel/./libtbx/program_utils copying build/lib/libtbx/program_utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/program_utils copying build/lib/libtbx/tst_containers.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/introspection.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/development copying build/lib/libtbx/development/timers.py -> build/bdist.linux-loongarch64/wheel/./libtbx/development copying build/lib/libtbx/development/xcode_build_phase.py -> build/bdist.linux-loongarch64/wheel/./libtbx/development copying build/lib/libtbx/development/except_Exception.py -> build/bdist.linux-loongarch64/wheel/./libtbx/development copying build/lib/libtbx/development/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/development copying build/lib/libtbx/xmlrpc_server_example.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/topological_sort.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_math_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/env_config.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/server copying build/lib/libtbx/server/StartServer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/server copying build/lib/libtbx/server/FileServer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/server copying build/lib/libtbx/server/SocketServer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/server copying build/lib/libtbx/server/FileSocket.py -> build/bdist.linux-loongarch64/wheel/./libtbx/server copying build/lib/libtbx/server/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/server copying build/lib/libtbx/server/FileClient.py -> build/bdist.linux-loongarch64/wheel/./libtbx/server copying build/lib/libtbx/math_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/pkg_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/forward_compatibility.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/crossmingw.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/find_reference_cycles.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_xmlrpc_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/configure.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/file_clutter.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/clusterTests.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_thread_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/python_code_parsing.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/smart_open.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/easy_pickle.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_version.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/callbacks.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/version.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/scheduling_helpers.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/sge_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/tst.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/pbs_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/remote.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/generic.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/lsf.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils creating build/bdist.linux-loongarch64/wheel/libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/transfer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/util.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/status.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/polling.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/submission.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/processing/errors.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils/processing copying build/lib/libtbx/queuing_system_utils/looping.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/communication.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/queuing_system_utils/scheduling.py -> build/bdist.linux-loongarch64/wheel/./libtbx/queuing_system_utils copying build/lib/libtbx/citations.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/test_utils copying build/lib/libtbx/test_utils/t96_roster.py -> build/bdist.linux-loongarch64/wheel/./libtbx/test_utils copying build/lib/libtbx/test_utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/test_utils copying build/lib/libtbx/test_utils/parallel.py -> build/bdist.linux-loongarch64/wheel/./libtbx/test_utils copying build/lib/libtbx/tst_mahalanobis.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/easy_profile.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/pyframe.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/libtbx/auto_build copying build/lib/libtbx/auto_build/write_gui_dispatcher_include.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/regenerate_module_files.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/install_base_packages.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/plus_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/installer_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_mac_app.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_windows_exe.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/make_bundle.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_cctbx_bundle_for_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_mac_pkg.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/package_defs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/install_conda.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/create_windows_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/setup_installer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/bootstrap.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/install_distribution.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build copying build/lib/libtbx/auto_build/rpath.py -> build/bdist.linux-loongarch64/wheel/./libtbx/auto_build creating build/bdist.linux-loongarch64/wheel/libtbx/langchain copying build/lib/libtbx/langchain/phenix_knowledge.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/hypothesis_evaluator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/graph.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/program_registry.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/file_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/workflow_state.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/validation_inspector.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/session_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/template_builder.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/rate_limit_handler.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/nl_to_phil.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/session.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/format_validation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/dry_run_manager.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/docs_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/workflow_engine.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/validation_history.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/pattern_manager.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/program_validator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/event_log.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/advice_preprocessor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/graph_nodes.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/rules_selector.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/phenix_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/error_classifier.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/metric_evaluator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/thinking_agent.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/command_builder.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/generate_logic_doc.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/r_factors.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/directive_extractor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/generate_safety_docs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/intent_classifier.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/sanity_checker.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/config_loader.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/contract.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/gate_evaluator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/memory.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/metrics_analyzer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/raw_advice_scanner.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/transport.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/log_section_extractor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/mtz_inspector.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/graph_state.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/api_client.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/phil_validator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/error_analyzer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/tst_agent_enhancements.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/planner.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/structure_model.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/failure_diagnoser.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/yaml_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/kb_tags.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/event_formatter.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/file_metadata.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/best_files_tracker.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/display_data_model.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/strategy_memory.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/placement_checker.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/plan_generator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/perceive_checks.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/command_postprocessor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent copying build/lib/libtbx/langchain/agent/directive_validator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/agent creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/commands copying build/lib/libtbx/langchain/commands/base.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/commands copying build/lib/libtbx/langchain/commands/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/commands copying build/lib/libtbx/langchain/run_build_db.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/utils copying build/lib/libtbx/langchain/utils/text_processing.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/utils copying build/lib/libtbx/langchain/utils/query.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/utils copying build/lib/libtbx/langchain/utils/run_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/utils copying build/lib/libtbx/langchain/utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/utils creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/yaml_loader.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/thinking_prompts.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/prompts_hybrid.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/program_registration.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/explanation_prompts.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/plan_schema.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/prompts.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/summary_display.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/phenix_programs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/plan_template_loader.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/api_schema.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/metric_patterns.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/kb_loader.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/html_report_template.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge copying build/lib/libtbx/langchain/knowledge/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/knowledge creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/examples copying build/lib/libtbx/langchain/examples/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/examples creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/core copying build/lib/libtbx/langchain/core/_build_info.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/core copying build/lib/libtbx/langchain/core/llm.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/core copying build/lib/libtbx/langchain/core/types.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/core copying build/lib/libtbx/langchain/core/_version.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/core copying build/lib/libtbx/langchain/core/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/core creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/strategies copying build/lib/libtbx/langchain/strategies/base.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/strategies copying build/lib/libtbx/langchain/strategies/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/strategies creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/agent_session_analyzer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/analysis_request.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/state_extractor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/report_verifier.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/orientation_strip.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/summarizer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/analyzer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/log_info.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/program_identity.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/analysis/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/analysis copying build/lib/libtbx/langchain/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/log_extraction copying build/lib/libtbx/langchain/log_extraction/validate.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/log_extraction copying build/lib/libtbx/langchain/log_extraction/corpus_paths.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/log_extraction copying build/lib/libtbx/langchain/log_extraction/run_controls.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/log_extraction copying build/lib/libtbx/langchain/log_extraction/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/log_extraction copying build/lib/libtbx/langchain/log_extraction/run_measurements.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/log_extraction copying build/lib/libtbx/langchain/log_extraction/log_structure_extractor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/log_extraction creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/document_loader.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/retriever.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/vector_store.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/_chroma_resilience.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/rag/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/rag copying build/lib/libtbx/langchain/run_inspect_db.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain copying build/lib/libtbx/langchain/run_query_docs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_contract_compliance.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase4_history_flags.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_spurious_stop_after_requested.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_v112_13_fixes.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_settings_list_coercion.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_session_directives.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase5_error_classification.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/canary_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_protocol_version.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_canary.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase9_llm_perturbation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_force_no_ai_server.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_cryoem_metric_evaluator_validation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_scenario_tracer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_action_item_1.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_stop_condition_false_positive.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_diagnosed_failure_stop.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/tests/integration copying build/lib/libtbx/langchain/tests/integration/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests/integration copying build/lib/libtbx/langchain/tests/tst_planning_framework.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/test_api_keys.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_intent_classifier.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_dry_run.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_data_input_filter.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests creating build/bdist.linux-loongarch64/wheel/libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_b1_stop_after_requested.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_planning.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_directive_extraction.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_b2_gated_wipe_planning.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/framework.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/run_llm_tests.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_a1_extractor_smoke.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_c1_raw_authority.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/tst_framework_self.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/llm/canary_check.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests/llm copying build/lib/libtbx/langchain/tests/tst_density_modify_experiment_type.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_diagnostic_messages.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_solve_action_keywords.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_report_verifier.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_file_encoding.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase2_path_consistency.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_plan_autostop_validation_suppression.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_extractor_grounding.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_new_programs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_h17_strip_executor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_backward_compat.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase3d_motivating_tutorial.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_autobuild_hl_recovery.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_integration.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_rfree_resolution_stop.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_structure_model.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase8_command_building.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_log_structure_extractor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_workflow_complete_stop.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_rfree_lock_reconciliation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_old_client_compat.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_sequence_only_routing.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_state_serialization.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_placement_skip_rebuild.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_autobuild_sequence_waiver.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_summary_file.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_extractor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_program_registration.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_initialize_plan_smoke.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_validate_step_after_program_guard.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_stop_reason_prompt.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_extract_raw_advice.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase1_contract_gaps.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_safe_float_consolidation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_n_bugs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/audit_phase_rename.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_mtz_phases_session_blocking.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_obs_labels_auto_fill.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_stop_condition_fix.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_silent_stop_abort_messages.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_command_builder.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_input_mtz_has_rfree_plumbing.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_event_formatter_file_categories.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phaser_multimodel.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_session_summary.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_agent_build_info.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_mode_isolation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_api_schema.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_workflow_state.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_yaml_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase3_serialization_symmetry.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_session_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_rebuild_template_selection.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_llm_unavailable_notice.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_raw_advice_scanner.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_user_advice_filter.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase6_category_consumer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_audit_fixes.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_transport.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_halfmap_sigmaa_inventory.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_dependencies.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_resolve_cryo_em_ncs_inject.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_extractor_behavior_regression.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_program_identity.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_decision_flow.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directives_integration.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_template.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_file_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_ligandfit_patterns.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_supported_providers_single_source.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_provider_error_classification.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_reasoning_command_divergence.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_after_program_fill_from_raw.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_metric_patterns.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_reactive_deviation_hold.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_extended_stop_phrasings.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_space_group_validation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_validator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_resume_reopen_stages.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_cryoem_stop_validation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase2b_activation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_program_requirements.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_file_categorization.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_ligand_workflow_restart.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_abort_message_all_stops.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_sanity_checker.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phil_namespace_cleaner.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_build_experiment_type_and_rfree.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_copies_tracking.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_plan_lead_program_offer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_validate_file_overrides.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_docs_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_transport_surfaces.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_strategy_memory.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_advice_preprocessing.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_hypothesis_evaluator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_after_program_prompt.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_file_categorizer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_predict_and_build_no_ncs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_autosol_bugs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_metrics_analyzer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_v120_providers.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_stop_reason_codes.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phil_validation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_plan_catchup_failure_semantics.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_classify_mtz_type_001.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_rfree_generate_guard.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_validation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_refine_final_rfree.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_error_classifier.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_langchain_tools.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_grounding_stop_after_requested.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_skip_to_program.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_best_files_tracker.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_validator_typo_hints.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_provider_lock.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_display_data_model.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_hardcoded_cleanup.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_analysis_request.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_perceive_stop_checks.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_rfree_flags_missing.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_extraction_failure_visibility.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase0_static_audit.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_optional_dep_resilience.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/run_all_tests.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_error_analyzer.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_yaml_config.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_thinking_defense.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_summary_display.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_gate_evaluator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_event_system.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_preprocessor_file_override.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_validation_history.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_log_extractor.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_portkey_embedding_model.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_h18_1_phil_roundtrip.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_plan_generator.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase7_routing_simulation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_mtz_crosscheck.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_fix_verification.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_cc_key_extraction.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_simple_extractor_validation.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_history_analysis.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_skip_promotion.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_layer_diagnostics.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/analyze_tutorial_runs.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_dock_and_stop.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_fabricated_stop_condition.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_directive_extractor_sentinel_space_group.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_step1f_single_emit.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_standalone_consistency.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_default_models.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_pattern_manager.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_thinking_agent.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_phase3_bug5.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_plan_schema.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_general_resolver.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_shared_code_imports.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/langchain/tests/tst_explanation_prompts.py -> build/bdist.linux-loongarch64/wheel/./libtbx/langchain/tests copying build/lib/libtbx/tst_easy_mp_state.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_object_oriented_patterns.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/load_env.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/log.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_scheduling.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_easy_pickle.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_easy_mp.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/str_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/code_analysis.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_conda_dispatcher.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_binary_search.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/metric_prefixes.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/wingide.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_program_template.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_path.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/binary_search.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_find_unused_imports.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/xmlrpc_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/path.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/mpi4py.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/simplexml.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_run_tests_parallel_retry.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/progress.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_citation_encoding.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/objgraph.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/table_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/resource_monitor.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_str_utils.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_dlite.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/cluster.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/tst_add_docstrings_with_ai.py -> build/bdist.linux-loongarch64/wheel/./libtbx copying build/lib/libtbx/try_hello_world_c.py -> build/bdist.linux-loongarch64/wheel/./libtbx creating build/bdist.linux-loongarch64/wheel/simtbx creating build/bdist.linux-loongarch64/wheel/simtbx/diffBragg copying build/lib/simtbx/diffBragg/mpi_logger.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/psf.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/prep_stage2_input.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg creating build/bdist.linux-loongarch64/wheel/simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/refiners/base_refiner.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/refiners/stage_two_refiner.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners creating build/bdist.linux-loongarch64/wheel/simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/manager.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/hexagonal.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/tetragonal.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/crystal_systems/monoclinic.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners/crystal_systems copying build/lib/simtbx/diffBragg/refiners/parameters.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/refiners/geometry.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/refiners/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg/refiners copying build/lib/simtbx/diffBragg/device.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/attr_list.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/ensemble_refine_launcher.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/parameter_errors.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/hopper_utils.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/hopper_ensemble_utils.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/phil.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/hopper_io.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/stage_two_utils.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg copying build/lib/simtbx/diffBragg/utils.py -> build/bdist.linux-loongarch64/wheel/./simtbx/diffBragg creating build/bdist.linux-loongarch64/wheel/simtbx/modeling copying build/lib/simtbx/modeling/FormatHDF5AttributeGeometry.py -> build/bdist.linux-loongarch64/wheel/./simtbx/modeling copying build/lib/simtbx/modeling/forward_models.py -> build/bdist.linux-loongarch64/wheel/./simtbx/modeling copying build/lib/simtbx/modeling/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/modeling copying build/lib/simtbx/modeling/predictions.py -> build/bdist.linux-loongarch64/wheel/./simtbx/modeling creating build/bdist.linux-loongarch64/wheel/simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_minimal.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_threads.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_gui_init.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_anisotropic_mosaicity.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_beam.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_gauss_argchk.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_multisource_background.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_multipanel.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_input.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_gaussian_mosaicity2.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_crystal.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_basic.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_pilatus.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/anisotropic_mosaicity.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/sim_data.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_gui_frames.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/utils.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_gaussian_mosaicity.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_mosaic.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/tst_nanoBragg_cbf_write.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg copying build/lib/simtbx/nanoBragg/nanoBragg_gui_dialogs.py -> build/bdist.linux-loongarch64/wheel/./simtbx/nanoBragg creating build/bdist.linux-loongarch64/wheel/simtbx/gpu copying build/lib/simtbx/gpu/tst_gpu_multisource_background.py -> build/bdist.linux-loongarch64/wheel/./simtbx/gpu copying build/lib/simtbx/gpu/tst_shoeboxes.py -> build/bdist.linux-loongarch64/wheel/./simtbx/gpu copying build/lib/simtbx/gpu/tst_exafel_api.py -> build/bdist.linux-loongarch64/wheel/./simtbx/gpu copying build/lib/simtbx/gpu/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/gpu creating build/bdist.linux-loongarch64/wheel/simtbx/kokkos copying build/lib/simtbx/kokkos/tst_kokkos_lib.py -> build/bdist.linux-loongarch64/wheel/./simtbx/kokkos copying build/lib/simtbx/kokkos/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/kokkos copying build/lib/simtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx copying build/lib/simtbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./simtbx creating build/bdist.linux-loongarch64/wheel/simtbx/pixel copying build/lib/simtbx/pixel/__init__.py -> build/bdist.linux-loongarch64/wheel/./simtbx/pixel creating build/bdist.linux-loongarch64/wheel/omptbx copying build/lib/omptbx/tst.py -> build/bdist.linux-loongarch64/wheel/./omptbx copying build/lib/omptbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./omptbx creating build/bdist.linux-loongarch64/wheel/gltbx copying build/lib/gltbx/gl_managed.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/generate_functions_bpl.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/images.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_cube.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_motion_on_tab.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_viewers_images.py -> build/bdist.linux-loongarch64/wheel/./gltbx creating build/bdist.linux-loongarch64/wheel/gltbx/command_line copying build/lib/gltbx/command_line/try_imports.py -> build/bdist.linux-loongarch64/wheel/./gltbx/command_line copying build/lib/gltbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./gltbx/command_line copying build/lib/gltbx/wx_scene.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/viewer_utils.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/tst.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/util.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_viewer_leapmotion.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/quadrics.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_viewer_example.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/tst_ellipsoids.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/generate_fonts_ucs_cpp.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/extract_opengl_specs.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/gl.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_viewer.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/tst_fonts.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/fonts.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/glu.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/generate_defines_bpl.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/tst_viewer_utils.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/wx_ellipsoids_test.py -> build/bdist.linux-loongarch64/wheel/./gltbx copying build/lib/gltbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./gltbx creating build/bdist.linux-loongarch64/wheel/serialtbx creating build/bdist.linux-loongarch64/wheel/serialtbx/mono_simulation copying build/lib/serialtbx/mono_simulation/util.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/mono_simulation copying build/lib/serialtbx/mono_simulation/__init__.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/mono_simulation copying build/lib/serialtbx/mono_simulation/max_like.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/mono_simulation creating build/bdist.linux-loongarch64/wheel/serialtbx/detector copying build/lib/serialtbx/detector/jungfrau.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector copying build/lib/serialtbx/detector/rayonix.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector copying build/lib/serialtbx/detector/cspad.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector copying build/lib/serialtbx/detector/xtc.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector copying build/lib/serialtbx/detector/__init__.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector creating build/bdist.linux-loongarch64/wheel/serialtbx/detector/legacy_metrology copying build/lib/serialtbx/detector/legacy_metrology/generic_detector.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector/legacy_metrology copying build/lib/serialtbx/detector/legacy_metrology/cspad_detector.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector/legacy_metrology copying build/lib/serialtbx/detector/legacy_metrology/metrology.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector/legacy_metrology copying build/lib/serialtbx/detector/legacy_metrology/__init__.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/detector/legacy_metrology copying build/lib/serialtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./serialtbx creating build/bdist.linux-loongarch64/wheel/serialtbx/util copying build/lib/serialtbx/util/construct_frame.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/util copying build/lib/serialtbx/util/energy_scan_notch_finder.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/util copying build/lib/serialtbx/util/time.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/util copying build/lib/serialtbx/util/__init__.py -> build/bdist.linux-loongarch64/wheel/./serialtbx/util creating build/bdist.linux-loongarch64/wheel/scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/serialization copying build/lib/scitbx/serialization/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/serialization copying build/lib/scitbx/cubicle_neighbors.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/r3_utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/suffixtree copying build/lib/scitbx/suffixtree/single.py -> build/bdist.linux-loongarch64/wheel/./scitbx/suffixtree creating build/bdist.linux-loongarch64/wheel/scitbx/suffixtree/test copying build/lib/scitbx/suffixtree/test/tst_single.py -> build/bdist.linux-loongarch64/wheel/./scitbx/suffixtree/test copying build/lib/scitbx/suffixtree/test/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/suffixtree/test creating build/bdist.linux-loongarch64/wheel/scitbx/suffixtree/boost_python copying build/lib/scitbx/suffixtree/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/suffixtree/boost_python copying build/lib/scitbx/suffixtree/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/suffixtree creating build/bdist.linux-loongarch64/wheel/scitbx/command_line copying build/lib/scitbx/command_line/show_sizes.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/apply_tapenade_hints.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/generate_error_h.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/histogram.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/show_exp_times.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/command_line/unicode_examples.py -> build/bdist.linux-loongarch64/wheel/./scitbx/command_line copying build/lib/scitbx/smoothing.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/regular_grid_on_unit_sphere.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/linalg copying build/lib/scitbx/linalg/svd.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg copying build/lib/scitbx/linalg/eigensystem.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg copying build/lib/scitbx/linalg/ext.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg creating build/bdist.linux-loongarch64/wheel/scitbx/linalg/boost_python copying build/lib/scitbx/linalg/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/boost_python copying build/lib/scitbx/linalg/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg creating build/bdist.linux-loongarch64/wheel/scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_lapack_dsyev.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_cholesky.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_matrix.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_eigensystem.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_lapack_svd.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/tests/tst_svd.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg/tests copying build/lib/scitbx/linalg/householder.py -> build/bdist.linux-loongarch64/wheel/./scitbx/linalg creating build/bdist.linux-loongarch64/wheel/scitbx/stdlib copying build/lib/scitbx/stdlib/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stdlib creating build/bdist.linux-loongarch64/wheel/scitbx/misc copying build/lib/scitbx/misc/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/misc copying build/lib/scitbx/differential_evolution.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/restraints.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/line_search copying build/lib/scitbx/line_search/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/line_search copying build/lib/scitbx/minimizers.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/matrix copying build/lib/scitbx/matrix/row_echelon.py -> build/bdist.linux-loongarch64/wheel/./scitbx/matrix copying build/lib/scitbx/matrix/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/matrix creating build/bdist.linux-loongarch64/wheel/scitbx/matrix/tests copying build/lib/scitbx/matrix/tests/tst_row_echelon.py -> build/bdist.linux-loongarch64/wheel/./scitbx/matrix/tests copying build/lib/scitbx/matrix/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/matrix/tests copying build/lib/scitbx/matrix/tests/tst_householder.py -> build/bdist.linux-loongarch64/wheel/./scitbx/matrix/tests copying build/lib/scitbx/cross_entropy.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/examples copying build/lib/scitbx/examples/minimizer_comparisons.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/immoptibox_ports.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/lbfgs_recipe.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/flex_grid.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/chebyshev_lsq_example.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/flex_array_loops.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/integrating_a_weighted_sinc_function.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/principal_axes_of_inertia.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/bootstrap.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/functions.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples copying build/lib/scitbx/examples/lbfgs_linear_least_squares_fit.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples creating build/bdist.linux-loongarch64/wheel/scitbx/examples/bevington copying build/lib/scitbx/examples/bevington/silver.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples/bevington copying build/lib/scitbx/examples/bevington/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples/bevington copying build/lib/scitbx/examples/rigid_body_refinement_core.py -> build/bdist.linux-loongarch64/wheel/./scitbx/examples creating build/bdist.linux-loongarch64/wheel/scitbx/iso_surface copying build/lib/scitbx/iso_surface/tst_iso_surface.py -> build/bdist.linux-loongarch64/wheel/./scitbx/iso_surface copying build/lib/scitbx/iso_surface/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/iso_surface copying build/lib/scitbx/simplex.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/error copying build/lib/scitbx/error/tst_error.py -> build/bdist.linux-loongarch64/wheel/./scitbx/error copying build/lib/scitbx/error/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/error creating build/bdist.linux-loongarch64/wheel/scitbx/glmtbx creating build/bdist.linux-loongarch64/wheel/scitbx/glmtbx/boost_python copying build/lib/scitbx/glmtbx/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/glmtbx/boost_python copying build/lib/scitbx/glmtbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/glmtbx creating build/bdist.linux-loongarch64/wheel/scitbx/glmtbx/tests copying build/lib/scitbx/glmtbx/tests/tst.py -> build/bdist.linux-loongarch64/wheel/./scitbx/glmtbx/tests copying build/lib/scitbx/glmtbx/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/glmtbx/tests creating build/bdist.linux-loongarch64/wheel/scitbx/sparse creating build/bdist.linux-loongarch64/wheel/scitbx/sparse/boost_python copying build/lib/scitbx/sparse/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/sparse/boost_python copying build/lib/scitbx/sparse/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/sparse creating build/bdist.linux-loongarch64/wheel/scitbx/sparse/tests copying build/lib/scitbx/sparse/tests/tst_sparse.py -> build/bdist.linux-loongarch64/wheel/./scitbx/sparse/tests copying build/lib/scitbx/sparse/tests/tst_lu_factorization.py -> build/bdist.linux-loongarch64/wheel/./scitbx/sparse/tests copying build/lib/scitbx/sparse/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/sparse/tests creating build/bdist.linux-loongarch64/wheel/scitbx/random creating build/bdist.linux-loongarch64/wheel/scitbx/random/boost_python copying build/lib/scitbx/random/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/random/boost_python copying build/lib/scitbx/random/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/random creating build/bdist.linux-loongarch64/wheel/scitbx/random/tests copying build/lib/scitbx/random/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/random/tests copying build/lib/scitbx/random/tests/tst_random.py -> build/bdist.linux-loongarch64/wheel/./scitbx/random/tests copying build/lib/scitbx/direct_search_simulated_annealing.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/lbfgsb.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/lbfgs copying build/lib/scitbx/lbfgs/tst_func_free_line_search.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs copying build/lib/scitbx/lbfgs/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs creating build/bdist.linux-loongarch64/wheel/scitbx/lbfgs/dev copying build/lib/scitbx/lbfgs/dev/twisted_gaussian.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs/dev copying build/lib/scitbx/lbfgs/dev/run.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs/dev copying build/lib/scitbx/lbfgs/dev/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs/dev copying build/lib/scitbx/lbfgs/tst_curvatures.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs copying build/lib/scitbx/lbfgs/tst_mpi_split_evaluator.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs copying build/lib/scitbx/lbfgs/tst_lbfgs_fem.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs copying build/lib/scitbx/lbfgs/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lbfgs creating build/bdist.linux-loongarch64/wheel/scitbx/wigner copying build/lib/scitbx/wigner/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/wigner copying build/lib/scitbx/wigner/tst_wigner3j.py -> build/bdist.linux-loongarch64/wheel/./scitbx/wigner creating build/bdist.linux-loongarch64/wheel/scitbx/stl copying build/lib/scitbx/stl/tst_set.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl copying build/lib/scitbx/stl/vector.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl copying build/lib/scitbx/stl/tst_map.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl copying build/lib/scitbx/stl/set.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl copying build/lib/scitbx/stl/map.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl copying build/lib/scitbx/stl/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl copying build/lib/scitbx/stl/tst_vector.py -> build/bdist.linux-loongarch64/wheel/./scitbx/stl creating build/bdist.linux-loongarch64/wheel/scitbx/boost_python copying build/lib/scitbx/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/boost_python creating build/bdist.linux-loongarch64/wheel/scitbx/rigid_body creating build/bdist.linux-loongarch64/wheel/scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_featherstone.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_free_motion_hard.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/free_motion_reference_impl.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/test_utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_spherical_refinement.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_molecules.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/joint_lib.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/wx_molecules.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/featherstone.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/wx_joint_lib.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_singular.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_joint_lib.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/tst_free_motion.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/test_simulation.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/proto/wx_free_motion.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/proto copying build/lib/scitbx/rigid_body/tst.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body creating build/bdist.linux-loongarch64/wheel/scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/tardy.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/body_lib.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/spatial_lib.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/tst_tardy.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/joint_lib.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/featherstone.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/make_bundles.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/wx_tardy.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/tst_basic.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/essence/tst_energy_plots.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body/essence copying build/lib/scitbx/rigid_body/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/rigid_body creating build/bdist.linux-loongarch64/wheel/scitbx/dtmin copying build/lib/scitbx/dtmin/realsymmetricpseudoinverse.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/twisted_gaussian.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/bounds.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin creating build/bdist.linux-loongarch64/wheel/scitbx/dtmin/regression copying build/lib/scitbx/dtmin/regression/tst_dtmin_booth.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin/regression copying build/lib/scitbx/dtmin/regression/tst_dtmin_basic.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin/regression copying build/lib/scitbx/dtmin/regression/tst_dtmin_twisted.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin/regression copying build/lib/scitbx/dtmin/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin/regression copying build/lib/scitbx/dtmin/refinebase.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/min_logging.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/optional.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/compulsory.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/auxiliary.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/reparams.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/dtmin/minimizer.py -> build/bdist.linux-loongarch64/wheel/./scitbx/dtmin copying build/lib/scitbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/genetic_algorithm_with_mp.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/fftpack.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/math copying build/lib/scitbx/math/so3_lie_algebra.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/curve_fitting.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/incremental_SO3_sampling.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/sphere_sphere_intersection.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_undirected_graph.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/undirected_graph.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/distributions.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/gaussian.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_zernike_mom.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/cubic_spline.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/zernike_align_fft.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/superpose.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_bessel_zeros.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_2d_zernike.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math creating build/bdist.linux-loongarch64/wheel/scitbx/math/dev copying build/lib/scitbx/math/dev/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/dev copying build/lib/scitbx/math/clustering.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/scale_curves.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/spe.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/ext.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_zernike.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/chebyshev_lsq_fit.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/lefebvre.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/des_3_240_21.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/des_3_100_13.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/fit_quadratic_function.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math creating build/bdist.linux-loongarch64/wheel/scitbx/math/boost_python copying build/lib/scitbx/math/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/boost_python copying build/lib/scitbx/math/tst_multivariate_moments.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/fliege_mayer_900_ylm.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/multiple_superposition.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/gumbel.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/besselk.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/sieve_of_eratosthenes.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/periodogram.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/fliege_mayer_900.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/gaussian_fit.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/breakpoint.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/euler_angles.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/tst_so3_lie_algebra.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/fit_peak.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/farey.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math copying build/lib/scitbx/math/minimum_covering_ellipsoid.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math creating build/bdist.linux-loongarch64/wheel/scitbx/math/erf copying build/lib/scitbx/math/erf/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/erf copying build/lib/scitbx/math/fliege_mayer_400.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math creating build/bdist.linux-loongarch64/wheel/scitbx/math/tests copying build/lib/scitbx/math/tests/tst_periodogram.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_euler_angles.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_curve_fitting.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_similarity_indices.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_r3_rotation.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_g_function.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_resample.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_line_search.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_math.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_angle_derivative.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_tetrahedron.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_exp_functions.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_weighted_correlation.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_error_propagation_matrix_inverse.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_halton.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_bessel.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_gaussian.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_superpose.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_fit_peak.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_orthonormal_basis.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_quadrature.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_gcd.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_cubic_equation.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_minimum_covering_ellipsoid.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_dmatrix.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_fit_quadratic_function.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_clustering.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_uniform_rotation_matrix.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py -> build/bdist.linux-loongarch64/wheel/./scitbx/math/tests copying build/lib/scitbx/minpack.py -> build/bdist.linux-loongarch64/wheel/./scitbx copying build/lib/scitbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/slatec copying build/lib/scitbx/slatec/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/slatec creating build/bdist.linux-loongarch64/wheel/scitbx/lstbx copying build/lib/scitbx/lstbx/normal_eqns.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx copying build/lib/scitbx/lstbx/normal_eqns_solving.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx creating build/bdist.linux-loongarch64/wheel/scitbx/lstbx/benchmarks copying build/lib/scitbx/lstbx/benchmarks/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx/benchmarks creating build/bdist.linux-loongarch64/wheel/scitbx/lstbx/boost_python copying build/lib/scitbx/lstbx/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx/boost_python copying build/lib/scitbx/lstbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx creating build/bdist.linux-loongarch64/wheel/scitbx/lstbx/tests copying build/lib/scitbx/lstbx/tests/tst_normal_equations.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx/tests copying build/lib/scitbx/lstbx/tests/test_problems.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx/tests copying build/lib/scitbx/lstbx/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/lstbx/tests creating build/bdist.linux-loongarch64/wheel/scitbx/array_family copying build/lib/scitbx/array_family/flex.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family creating build/bdist.linux-loongarch64/wheel/scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_numpy_bridge.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/regression_test.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_flex.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_numpy_scalar_conversions.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_smart_selection.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_flex_argument_passing.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python copying build/lib/scitbx/array_family/boost_python/tst_shared.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/boost_python creating build/bdist.linux-loongarch64/wheel/scitbx/array_family/accessors copying build/lib/scitbx/array_family/accessors/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/accessors copying build/lib/scitbx/array_family/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family creating build/bdist.linux-loongarch64/wheel/scitbx/array_family/detail copying build/lib/scitbx/array_family/detail/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family/detail copying build/lib/scitbx/array_family/shared.py -> build/bdist.linux-loongarch64/wheel/./scitbx/array_family copying build/lib/scitbx/golden_section_search.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/source_generators copying build/lib/scitbx/source_generators/lbfgs_fem.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators copying build/lib/scitbx/source_generators/flex_fwd_h.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators copying build/lib/scitbx/source_generators/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators creating build/bdist.linux-loongarch64/wheel/scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_apply.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_algebras.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_operator_traits_builtin.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_operator_functors.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_reductions.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/operator_functor_info.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_all.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/generate_std_imports.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/array_family/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators/array_family copying build/lib/scitbx/source_generators/utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/source_generators creating build/bdist.linux-loongarch64/wheel/scitbx/graph copying build/lib/scitbx/graph/tst_tardy_tree_find_paths.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/rigidity_matrix_symbolic.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/tardy_tree.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/rigidity.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/tst_rigidity.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/tst_tardy_tree.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/test_cases_tardy_pdb.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/tst_utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph copying build/lib/scitbx/graph/utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graph creating build/bdist.linux-loongarch64/wheel/scitbx/python_utils copying build/lib/scitbx/python_utils/tst_random_transform.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/command_line.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/robust_statistics.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/signal_utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/tst_robust.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/graph_tools.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/random_transform.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/misc.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/tst_graph.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/python_utils/dicts.py -> build/bdist.linux-loongarch64/wheel/./scitbx/python_utils copying build/lib/scitbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./scitbx creating build/bdist.linux-loongarch64/wheel/scitbx/graphics_utils copying build/lib/scitbx/graphics_utils/tst.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graphics_utils copying build/lib/scitbx/graphics_utils/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/graphics_utils creating build/bdist.linux-loongarch64/wheel/scitbx/tests copying build/lib/scitbx/tests/tst_r3_utils.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_smoothing.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/differential_evolution.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/simplex.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/direct_search_simulated_annealing.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_genetic_algorithm_with_mp.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_regular_grid_on_unit_sphere.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_basic.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/__init__.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_cubicle_neighbors.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/golden_section_search.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests copying build/lib/scitbx/tests/tst_minimizer_lbfgs_general.py -> build/bdist.linux-loongarch64/wheel/./scitbx/tests creating build/bdist.linux-loongarch64/wheel/qttbx copying build/lib/qttbx/qt.py -> build/bdist.linux-loongarch64/wheel/./qttbx creating build/bdist.linux-loongarch64/wheel/qttbx/regression copying build/lib/qttbx/regression/tst_chat_message_input.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_subagent.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_skills.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_window_chrome.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_storage.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_run_tests_manifest.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_overlay_anchor.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_session.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_message_bubble.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_markdown.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_image.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_storage_session.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_eliding.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_agent_core.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_tool_approval.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_phil_widgets.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_diagnostics.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_profile.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_subagent_view.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_conversation_widgets.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_logging_setup.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_mcp_client.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_data_manager_widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_runner.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_search.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_credentials_dialog.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_question_card.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/__init__.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_approval_coordinator.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_auto_height.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_artifact_panel.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression copying build/lib/qttbx/regression/tst_chat_tools.py -> build/bdist.linux-loongarch64/wheel/./qttbx/regression creating build/bdist.linux-loongarch64/wheel/qttbx/viewers copying build/lib/qttbx/viewers/chimerax.py -> build/bdist.linux-loongarch64/wheel/./qttbx/viewers copying build/lib/qttbx/viewers/__init__.py -> build/bdist.linux-loongarch64/wheel/./qttbx/viewers creating build/bdist.linux-loongarch64/wheel/qttbx/examples copying build/lib/qttbx/examples/phil_widgets_example.py -> build/bdist.linux-loongarch64/wheel/./qttbx/examples copying build/lib/qttbx/examples/data_manager_example.py -> build/bdist.linux-loongarch64/wheel/./qttbx/examples copying build/lib/qttbx/examples/__init__.py -> build/bdist.linux-loongarch64/wheel/./qttbx/examples copying build/lib/qttbx/examples/_helpers.py -> build/bdist.linux-loongarch64/wheel/./qttbx/examples creating build/bdist.linux-loongarch64/wheel/qttbx/widgets creating build/bdist.linux-loongarch64/wheel/qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/strings_widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/words_widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/key_widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/ints_widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/path_widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/float_widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/int_widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/_colors.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/str_widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/atom_selection.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/space_group.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/choice_widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/bool_widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/delegate.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/__init__.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/floats_widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/multiple.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/text_base.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/unit_cell.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil copying build/lib/qttbx/widgets/phil/qstr_widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/phil creating build/bdist.linux-loongarch64/wheel/qttbx/widgets/data_manager copying build/lib/qttbx/widgets/data_manager/_binding_popup.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/data_manager copying build/lib/qttbx/widgets/data_manager/widget.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/data_manager copying build/lib/qttbx/widgets/data_manager/_table_model.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/data_manager copying build/lib/qttbx/widgets/data_manager/_delegate.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/data_manager copying build/lib/qttbx/widgets/data_manager/__init__.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/data_manager copying build/lib/qttbx/widgets/data_manager/_phil_helpers.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/data_manager creating build/bdist.linux-loongarch64/wheel/qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/artifact.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/message_input.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat creating build/bdist.linux-loongarch64/wheel/qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/conversation.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/session.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/subagent.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/skills.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/paths.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/tools.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/mcp_client.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/base.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/storage.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/profile.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/runner.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/events.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/__init__.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/errors.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/agent/approval.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat/agent copying build/lib/qttbx/widgets/chat/credentials_dialog.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/eliding.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/overlay_anchor.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/tool_approval.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/chat_top_bar.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/conversation_view.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/auto_height.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/search_bar.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/edge_rail.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/conversation_list.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/logging_setup.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/artifact_panel.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/image_cache.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/conversation_search.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/message_bubble.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/markdown_view.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/markdown_export.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/diagnostics.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/__init__.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/tool_call_disclosure.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/question_card.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/chat/image_lightbox.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets/chat copying build/lib/qttbx/widgets/__init__.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets copying build/lib/qttbx/widgets/font_init.py -> build/bdist.linux-loongarch64/wheel/./qttbx/widgets copying build/lib/qttbx/phil.py -> build/bdist.linux-loongarch64/wheel/./qttbx copying build/lib/qttbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./qttbx copying build/lib/qttbx/run_tests.py -> build/bdist.linux-loongarch64/wheel/./qttbx creating build/bdist.linux-loongarch64/wheel/fftw3tbx copying build/lib/fftw3tbx/tst_ext.py -> build/bdist.linux-loongarch64/wheel/./fftw3tbx copying build/lib/fftw3tbx/libtbx_refresh.py -> build/bdist.linux-loongarch64/wheel/./fftw3tbx copying build/lib/fftw3tbx/__init__.py -> build/bdist.linux-loongarch64/wheel/./fftw3tbx running install_egg_info Copying cctbx.egg-info to build/bdist.linux-loongarch64/wheel/./cctbx-2023.12.egg-info running install_scripts creating build/bdist.linux-loongarch64/wheel/cctbx-2023.12.dist-info/WHEEL creating '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/.tmp-9s1e010v/cctbx-2023.12-py3-none-any.whl' and adding 'build/bdist.linux-loongarch64/wheel' to it adding 'annlib_adaptbx/__init__.py' adding 'annlib_adaptbx/run_tests.py' adding 'annlib_adaptbx/annlib_adaptbx/__init__.py' adding 'annlib_adaptbx/annlib_adaptbx/sample.py' adding 'annlib_adaptbx/annlib_adaptbx/self_match.py' adding 'annlib_adaptbx/source_generators/__init__.py' adding 'annlib_adaptbx/source_generators/generate_all.py' adding 'boost_adaptbx/__init__.py' adding 'boost_adaptbx/hybrid_times.py' adding 'boost_adaptbx/libtbx_refresh.py' adding 'boost_adaptbx/run_tests.py' adding 'boost_adaptbx/boost/__init__.py' adding 'boost_adaptbx/boost/optional.py' adding 'boost_adaptbx/boost/python.py' adding 'boost_adaptbx/boost/rational.py' adding 'boost_adaptbx/boost/std_pair.py' adding 'boost_adaptbx/boost/tuple.py' adding 'boost_adaptbx/command_line/__init__.py' adding 'boost_adaptbx/command_line/divide_by_zero.py' adding 'boost_adaptbx/command_line/double_overflow.py' adding 'boost_adaptbx/command_line/gcd.py' adding 'boost_adaptbx/command_line/inexact.py' adding 'boost_adaptbx/command_line/int_overflow.py' adding 'boost_adaptbx/command_line/lcm.py' adding 'boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py' adding 'boost_adaptbx/command_line/segmentation_fault.py' adding 'boost_adaptbx/command_line/show_environ_usage.py' adding 'boost_adaptbx/command_line/show_platform_info.py' adding 'boost_adaptbx/graph/__init__.py' adding 'boost_adaptbx/graph/breadth_first_search.py' adding 'boost_adaptbx/graph/clustering_algorithm.py' adding 'boost_adaptbx/graph/connected_component_algorithm.py' adding 'boost_adaptbx/graph/graph_structure_comparison.py' adding 'boost_adaptbx/graph/maximum_clique.py' adding 'boost_adaptbx/graph/metric.py' adding 'boost_adaptbx/graph/min_cut_max_flow.py' adding 'boost_adaptbx/graph/minimum_cut_enumerate.py' adding 'boost_adaptbx/graph/utility.py' adding 'cbflib_adaptbx/__init__.py' adding 'cbflib_adaptbx/copy_files.py' adding 'cbflib_adaptbx/exercise_compression.py' adding 'cbflib_adaptbx/run_tests.py' adding 'cbflib_adaptbx/command_line/__init__.py' adding 'cbflib_adaptbx/command_line/dump.py' adding 'ccp4io_adaptbx/__init__.py' adding 'ccp4io_adaptbx/copy_files.py' adding 'ccp4io_adaptbx/tst.py' adding 'cctbx/__init__.py' adding 'cctbx/adptbx.py' adding 'cctbx/anharmonic.py' adding 'cctbx/crystal_orientation.py' adding 'cctbx/dmtbx.py' adding 'cctbx/euclidean_model_matching.py' adding 'cctbx/french_wilson.py' adding 'cctbx/libtbx_refresh.py' adding 'cctbx/math_module.py' adding 'cctbx/multipolar.py' adding 'cctbx/r_free_utils.py' adding 'cctbx/run_examples.py' adding 'cctbx/run_tests.py' adding 'cctbx/statistics.py' adding 'cctbx/symmetry_search.py' adding 'cctbx/translation_search.py' adding 'cctbx/adp_restraints/__init__.py' adding 'cctbx/adp_restraints/energies.py' adding 'cctbx/adp_restraints/flags.py' adding 'cctbx/adp_restraints/tst_ext.py' adding 'cctbx/array_family/__init__.py' adding 'cctbx/array_family/flex.py' adding 'cctbx/command_line/__init__.py' adding 'cctbx/command_line/auto_sharpen.py' adding 'cctbx/command_line/brehm_diederichs.py' adding 'cctbx/command_line/cctbx_test_nightly.py' adding 'cctbx/command_line/cod_select_and_pickle.py' adding 'cctbx/command_line/diffuse.py' adding 'cctbx/command_line/eltbx.show_fp_fdp.py' adding 'cctbx/command_line/euclidean_model_matching.py' adding 'cctbx/command_line/find_reticular_twin_laws.py' adding 'cctbx/command_line/form_factor_query.py' adding 'cctbx/command_line/precession_view.py' adding 'cctbx/command_line/qscore.py' adding 'cctbx/command_line/samosa_join.py' adding 'cctbx/command_line/samosa_scale.py' adding 'cctbx/command_line/segment_and_split_map.py' adding 'cctbx/command_line/space_group_info.py' adding 'cctbx/command_line/structure_factor_timings.py' adding 'cctbx/command_line/subgroups.py' adding 'cctbx/command_line/version.py' adding 'cctbx/command_line/wavelength_units.py' adding 'cctbx/covariance/__init__.py' adding 'cctbx/crystal/__init__.py' adding 'cctbx/crystal/burzlaff_zimmermann_dewolff.py' adding 'cctbx/crystal/close_packing.py' adding 'cctbx/crystal/coordination_sequences.py' adding 'cctbx/crystal/direct_space_asu.py' adding 'cctbx/crystal/distance_based_connectivity.py' adding 'cctbx/crystal/find_best_cell.py' adding 'cctbx/crystal/reindex.py' adding 'cctbx/crystal/super_cell.py' adding 'cctbx/crystal/tst_distance_based_connectivity.py' adding 'cctbx/crystal/tst_ext.py' adding 'cctbx/crystal/tst_super_cell.py' adding 'cctbx/development/__init__.py' adding 'cctbx/development/approx_amplitude_vs_resolution.py' adding 'cctbx/development/cns_density_modification.py' adding 'cctbx/development/create_models_or_maps.py' adding 'cctbx/development/debug_utils.py' adding 'cctbx/development/direct_or_fft.py' adding 'cctbx/development/electron_density_sampling.py' adding 'cctbx/development/fmt_utils.py' adding 'cctbx/development/github.py' adding 'cctbx/development/make_cns_input.py' adding 'cctbx/development/make_settings.py' adding 'cctbx/development/random_structure.py' adding 'cctbx/development/run_shelx.py' adding 'cctbx/development/run_shelx76.py' adding 'cctbx/development/space_group_option_parser.py' adding 'cctbx/development/structure_factor_utils.py' adding 'cctbx/development/tst_cns_epsilon.py' adding 'cctbx/development/tst_cns_hl.py' adding 'cctbx/eltbx/__init__.py' adding 'cctbx/eltbx/attenuation_coefficient.py' adding 'cctbx/eltbx/chemical_elements.py' adding 'cctbx/eltbx/covalent_radii.py' adding 'cctbx/eltbx/distance_based_connectivity.py' adding 'cctbx/eltbx/e_scattering.py' adding 'cctbx/eltbx/formula.py' adding 'cctbx/eltbx/fp_fdp.py' adding 'cctbx/eltbx/gaussian_fit.py' adding 'cctbx/eltbx/henke.py' adding 'cctbx/eltbx/icsd_radii.py' adding 'cctbx/eltbx/neutron.py' adding 'cctbx/eltbx/read_custom_scattering_dict.py' adding 'cctbx/eltbx/sasaki.py' adding 'cctbx/eltbx/tiny_pse.py' adding 'cctbx/eltbx/van_der_waals_radii.py' adding 'cctbx/eltbx/wavelengths.py' adding 'cctbx/eltbx/development/__init__.py' adding 'cctbx/eltbx/development/combine_fits.py' adding 'cctbx/eltbx/development/create_n_gaussian_raw_cpp.py' adding 'cctbx/eltbx/development/e_scattering_plots.py' adding 'cctbx/eltbx/development/format_gaussian_fits.py' adding 'cctbx/eltbx/development/hydrogen_plots.py' adding 'cctbx/eltbx/development/itvc_approx.py' adding 'cctbx/eltbx/development/itvc_cross_validation.py' adding 'cctbx/eltbx/development/itvc_fits.py' adding 'cctbx/eltbx/development/itvc_kissel.py' adding 'cctbx/eltbx/development/itvc_section61_io.py' adding 'cctbx/eltbx/development/kissel_fits.py' adding 'cctbx/eltbx/development/kissel_io.py' adding 'cctbx/eltbx/development/rez_rez_grant.py' adding 'cctbx/eltbx/xray_scattering/__init__.py' adding 'cctbx/examples/__init__.py' adding 'cctbx/examples/adp_symmetry_constraints.py' adding 'cctbx/examples/all_axes.py' adding 'cctbx/examples/analyze_adp.py' adding 'cctbx/examples/ccp4_map.py' adding 'cctbx/examples/change_hand_p31.py' adding 'cctbx/examples/convert_ccp4_symop_lib.py' adding 'cctbx/examples/cr2o3_consistency_checks.py' adding 'cctbx/examples/cr2o3_primitive_cell.py' adding 'cctbx/examples/exp_i_alpha_derivatives.py' adding 'cctbx/examples/f_model_example.py' adding 'cctbx/examples/fft_map_electron_density_around_atom.py' adding 'cctbx/examples/find_distances_using_cpp_objects.py' adding 'cctbx/examples/find_sys_abs_equiv_space_groups.py' adding 'cctbx/examples/g_exp_i_alpha_derivatives.py' adding 'cctbx/examples/g_exp_i_partial_derivatives.py' adding 'cctbx/examples/getting_started.py' adding 'cctbx/examples/hirshfeld_test.py' adding 'cctbx/examples/le_page_1982_vs_lebedev_2005.py' adding 'cctbx/examples/lebedev_2005_perturbation.py' adding 'cctbx/examples/list_non_principal_continuous_shifts.py' adding 'cctbx/examples/location_part.py' adding 'cctbx/examples/map_skewness.py' adding 'cctbx/examples/maximum_subgroups.py' adding 'cctbx/examples/miller_common_sets.py' adding 'cctbx/examples/miller_transform.py' adding 'cctbx/examples/neutron_structure_factors.py' adding 'cctbx/examples/phase_o_phrenia.py' adding 'cctbx/examples/quartz_structure.py' adding 'cctbx/examples/random_f_calc.py' adding 'cctbx/examples/random_puckers.py' adding 'cctbx/examples/reduced_cell_two_folds.py' adding 'cctbx/examples/site_symmetry_constraints.py' adding 'cctbx/examples/site_symmetry_table.py' adding 'cctbx/examples/space_group_matrices.py' adding 'cctbx/examples/space_subgroups.py' adding 'cctbx/examples/steve_collins.py' adding 'cctbx/examples/structure_factor_derivatives.py' adding 'cctbx/examples/structure_factor_derivatives_2.py' adding 'cctbx/examples/structure_factor_derivatives_3.py' adding 'cctbx/examples/structure_factor_derivatives_4.py' adding 'cctbx/examples/sub_group_graph.py' adding 'cctbx/examples/symops_530.py' adding 'cctbx/examples/trigonal_r_vs_tetragonal_i.py' adding 'cctbx/examples/tst_exp_i_alpha_derivatives.py' adding 'cctbx/examples/tst_g_exp_i_alpha_derivatives.py' adding 'cctbx/examples/tst_phase_o_phrenia.py' adding 'cctbx/examples/tst_space_subgroups.py' adding 'cctbx/examples/tst_structure_factor_derivatives.py' adding 'cctbx/examples/tst_structure_factor_derivatives_2.py' adding 'cctbx/examples/tst_structure_factor_derivatives_3.py' adding 'cctbx/examples/tst_structure_factor_derivatives_4.py' adding 'cctbx/examples/unit_cell_minimizers.py' adding 'cctbx/examples/unit_cell_refinement.py' adding 'cctbx/examples/view_fft_map.py' adding 'cctbx/examples/merging/__init__.py' adding 'cctbx/examples/merging/data_subset.py' adding 'cctbx/examples/merging/data_utilities.py' adding 'cctbx/examples/merging/show_results.py' adding 'cctbx/examples/merging/sigma_correction.py' adding 'cctbx/examples/merging/task4.py' adding 'cctbx/examples/merging/test1.py' adding 'cctbx/examples/merging/test_cc_half.py' adding 'cctbx/examples/merging/test_levenberg_sparse.py' adding 'cctbx/examples/merging/tst_permutations.py' adding 'cctbx/examples/merging/samosa/__init__.py' adding 'cctbx/examples/merging/samosa/join.py' adding 'cctbx/examples/merging/samosa/per_lattice_postrefinement.py' adding 'cctbx/examples/merging/samosa/scale.py' adding 'cctbx/examples/structure_factor_calculus/__init__.py' adding 'cctbx/examples/structure_factor_calculus/site_derivatives.py' adding 'cctbx/examples/structure_factor_calculus/sites_derivatives.py' adding 'cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py' adding 'cctbx/examples/structure_factor_calculus/u_star_derivatives.py' adding 'cctbx/geometry/__init__.py' adding 'cctbx/geometry_restraints/__init__.py' adding 'cctbx/geometry_restraints/auto_linking_types.py' adding 'cctbx/geometry_restraints/base_geometry.py' adding 'cctbx/geometry_restraints/distance_least_squares.py' adding 'cctbx/geometry_restraints/energies.py' adding 'cctbx/geometry_restraints/flags.py' adding 'cctbx/geometry_restraints/lbfgs.py' adding 'cctbx/geometry_restraints/linking_class.py' adding 'cctbx/geometry_restraints/manager.py' adding 'cctbx/geometry_restraints/process_nonbonded_proxies.py' adding 'cctbx/geometry_restraints/standard_cif_links.py' adding 'cctbx/geometry_restraints/tst_angle_derivs.py' adding 'cctbx/geometry_restraints/tst_ext.py' adding 'cctbx/geometry_restraints/tst_motif.py' adding 'cctbx/geometry_restraints/tst_process_nonbonded_proxies.py' adding 'cctbx/geometry_restraints/tst_proxy_registry.py' adding 'cctbx/macro_mol/__init__.py' adding 'cctbx/macro_mol/rotation_parameters.py' adding 'cctbx/maptbx/__init__.py' adding 'cctbx/maptbx/auto_sharpen.py' adding 'cctbx/maptbx/box.py' adding 'cctbx/maptbx/fsc_curve.py' adding 'cctbx/maptbx/map_symmetry.py' adding 'cctbx/maptbx/mask.py' adding 'cctbx/maptbx/mem.py' adding 'cctbx/maptbx/minimization.py' adding 'cctbx/maptbx/prepare_map_for_docking.py' adding 'cctbx/maptbx/prepare_map_for_refinement.py' adding 'cctbx/maptbx/qscore.py' adding 'cctbx/maptbx/real_space_refinement_simple.py' adding 'cctbx/maptbx/refine_scales_errors.py' adding 'cctbx/maptbx/refine_sharpening.py' adding 'cctbx/maptbx/resolution_from_map_and_model.py' adding 'cctbx/maptbx/segment_and_split_map.py' adding 'cctbx/maptbx/servalcat_difference_map.py' adding 'cctbx/maptbx/tst_MapPeakLocator.py' adding 'cctbx/maptbx/tst_asymmetric_map.py' adding 'cctbx/maptbx/tst_atom_curves.py' adding 'cctbx/maptbx/tst_atom_radius_as_central_peak_width.py' adding 'cctbx/maptbx/tst_bcr.py' adding 'cctbx/maptbx/tst_ccp.py' adding 'cctbx/maptbx/tst_get_percentile_cutoffs.py' adding 'cctbx/maptbx/tst_interpolation.py' adding 'cctbx/maptbx/tst_interpolation_2.py' adding 'cctbx/maptbx/tst_loft.py' adding 'cctbx/maptbx/tst_map_peak_3d_as_2d.py' adding 'cctbx/maptbx/tst_mask.py' adding 'cctbx/maptbx/tst_peak_volume_estimate.py' adding 'cctbx/maptbx/tst_qscore.py' adding 'cctbx/maptbx/tst_real_space_refinement_simple.py' adding 'cctbx/maptbx/tst_resolution_from_map_and_model.py' adding 'cctbx/maptbx/tst_target_and_gradients.py' adding 'cctbx/maptbx/bcr/__init__.py' adding 'cctbx/maptbx/bcr/bcr.py' adding 'cctbx/maptbx/bcr/compute_tables.py' adding 'cctbx/maptbx/bcr/qmap.py' adding 'cctbx/maptbx/bcr/tst_adp_refine.py' adding 'cctbx/maptbx/bcr/tst_example.py' adding 'cctbx/maptbx/bcr/tst_qmap_02.py' adding 'cctbx/maptbx/bcr/tst_table.py' adding 'cctbx/maptbx/bcr/tst_two_atoms.py' adding 'cctbx/maptbx/bcr/tst_vrm.py' adding 'cctbx/maptbx/bcr/tst_vrm2.py' adding 'cctbx/masks/__init__.py' adding 'cctbx/merging/__init__.py' adding 'cctbx/merging/brehm_diederichs.py' adding 'cctbx/miller/__init__.py' adding 'cctbx/miller/display.py' adding 'cctbx/miller/reindexing.py' adding 'cctbx/miller/tst_map_to_asu_isym.py' adding 'cctbx/miller/tst_reindexing.py' adding 'cctbx/neutron/__init__.py' adding 'cctbx/omz/__init__.py' adding 'cctbx/omz/bfgs.py' adding 'cctbx/omz/cif_refine.py' adding 'cctbx/omz/cod_refine.py' adding 'cctbx/omz/cod_select_and_pickle.py' adding 'cctbx/omz/dev.py' adding 'cctbx/omz/eval_iso_vs_refined.py' adding 'cctbx/omz/pdb_dev.py' adding 'cctbx/omz/tardy_adaptor.py' adding 'cctbx/omz/tst_bfgs.py' adding 'cctbx/omz/tst_dev.py' adding 'cctbx/regression/__init__.py' adding 'cctbx/regression/tst_adp_aniso_restraints.py' adding 'cctbx/regression/tst_adp_constraints.py' adding 'cctbx/regression/tst_adp_constraints_cartesian.py' adding 'cctbx/regression/tst_amplitude_normalisation.py' adding 'cctbx/regression/tst_change_basis.py' adding 'cctbx/regression/tst_connectivity.py' adding 'cctbx/regression/tst_connectivity_allsym.py' adding 'cctbx/regression/tst_coordination_sequences.py' adding 'cctbx/regression/tst_create_models_or_maps.py' adding 'cctbx/regression/tst_crystal.py' adding 'cctbx/regression/tst_crystal_asu_clusters.py' adding 'cctbx/regression/tst_crystal_close_packing.py' adding 'cctbx/regression/tst_diffuse.py' adding 'cctbx/regression/tst_direct_scaling.py' adding 'cctbx/regression/tst_direct_space_asu.py' adding 'cctbx/regression/tst_emma.py' adding 'cctbx/regression/tst_expand_to_p1.py' adding 'cctbx/regression/tst_f_model.py' adding 'cctbx/regression/tst_fast_nv1995.py' adding 'cctbx/regression/tst_fcalc_fft_stability.py' adding 'cctbx/regression/tst_find_best_cell.py' adding 'cctbx/regression/tst_fourier_transform_real_part_at_x.py' adding 'cctbx/regression/tst_french_wilson.py' adding 'cctbx/regression/tst_geometry_restraints.py' adding 'cctbx/regression/tst_geometry_restraints_2.py' adding 'cctbx/regression/tst_geometry_restraints_lbfgs.py' adding 'cctbx/regression/tst_grm_modifications.py' adding 'cctbx/regression/tst_grm_modifications_rm.py' adding 'cctbx/regression/tst_grm_pickling.py' adding 'cctbx/regression/tst_grouped_data.py' adding 'cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py' adding 'cctbx/regression/tst_krivy_gruber.py' adding 'cctbx/regression/tst_loc_res.py' adding 'cctbx/regression/tst_map_is_periodic.py' adding 'cctbx/regression/tst_map_weights_for_symmetry_summation.py' adding 'cctbx/regression/tst_maptbx_box.py' adding 'cctbx/regression/tst_maptbx_mask.py' adding 'cctbx/regression/tst_maptbx_structure_factors.py' adding 'cctbx/regression/tst_match_bijvoet_mates.py' adding 'cctbx/regression/tst_math_module.py' adding 'cctbx/regression/tst_mem.py' adding 'cctbx/regression/tst_mem_2.py' adding 'cctbx/regression/tst_miller.py' adding 'cctbx/regression/tst_miller_data_manipulation.py' adding 'cctbx/regression/tst_miller_double_step_filtration.py' adding 'cctbx/regression/tst_miller_fft_map.py' adding 'cctbx/regression/tst_miller_lookup_utils.py' adding 'cctbx/regression/tst_miller_merge_equivalents.py' adding 'cctbx/regression/tst_miller_statistics.py' adding 'cctbx/regression/tst_niggli_reduction_cpp.py' adding 'cctbx/regression/tst_pair_asu_table.py' adding 'cctbx/regression/tst_pointgroup_tools.py' adding 'cctbx/regression/tst_prepare_map_for_docking.py' adding 'cctbx/regression/tst_r_free_utils.py' adding 'cctbx/regression/tst_reciprocal_space_asu.py' adding 'cctbx/regression/tst_refine_xray_curvs.py' adding 'cctbx/regression/tst_reflection_statistics.py' adding 'cctbx/regression/tst_sampled_model_density.py' adding 'cctbx/regression/tst_sf_low_res_accuracy.py' adding 'cctbx/regression/tst_sgtbx.py' adding 'cctbx/regression/tst_sgtbx_denominators.py' adding 'cctbx/regression/tst_sgtbx_harker.py' adding 'cctbx/regression/tst_sgtbx_lattice_symmetry.py' adding 'cctbx/regression/tst_sgtbx_site_constraints.py' adding 'cctbx/regression/tst_sgtbx_special_op_simplifier.py' adding 'cctbx/regression/tst_sgtbx_subgroups.py' adding 'cctbx/regression/tst_sgtbx_tidy_pickling.py' adding 'cctbx/regression/tst_show_cosets.py' adding 'cctbx/regression/tst_space_group_type_tidy_cb_op_t.py' adding 'cctbx/regression/tst_sphericity.py' adding 'cctbx/regression/tst_statistics_graphs.py' adding 'cctbx/regression/tst_triplet_generator.py' adding 'cctbx/regression/tst_twin_target.py' adding 'cctbx/regression/tst_wavelength_units.py' adding 'cctbx/regression/tst_web_change_basis.py' adding 'cctbx/regression/tst_weighting_schemes.py' adding 'cctbx/regression/tst_wilson_plot.py' adding 'cctbx/regression/tst_xray.py' adding 'cctbx/regression/tst_xray_derivatives.py' adding 'cctbx/regression/tst_xray_fast_gradients.py' adding 'cctbx/regression/tst_xray_minimization.py' adding 'cctbx/regression/tst_xray_minimization_failure.py' adding 'cctbx/regression/tst_xray_target_functors.py' adding 'cctbx/sgtbx/__init__.py' adding 'cctbx/sgtbx/bravais_types.py' adding 'cctbx/sgtbx/cosets.py' adding 'cctbx/sgtbx/harker.py' adding 'cctbx/sgtbx/lattice_symmetry.py' adding 'cctbx/sgtbx/literal_description.py' adding 'cctbx/sgtbx/plane_groups.py' adding 'cctbx/sgtbx/pointgroup_tools.py' adding 'cctbx/sgtbx/rational_matrices_point_groups.py' adding 'cctbx/sgtbx/reticular_pg_tools.py' adding 'cctbx/sgtbx/reticular_twin_laws.py' adding 'cctbx/sgtbx/show_cosets.py' adding 'cctbx/sgtbx/sub_lattice_tools.py' adding 'cctbx/sgtbx/subgroups.py' adding 'cctbx/sgtbx/symbol_confidence.py' adding 'cctbx/sgtbx/sys_abs_equiv.py' adding 'cctbx/sgtbx/direct_space_asu/__init__.py' adding 'cctbx/sgtbx/direct_space_asu/check_redundancies.py' adding 'cctbx/sgtbx/direct_space_asu/cut_plane.py' adding 'cctbx/sgtbx/direct_space_asu/facet_analysis.py' adding 'cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py' adding 'cctbx/sgtbx/direct_space_asu/reference_table.py' adding 'cctbx/sgtbx/direct_space_asu/short_cuts.py' adding 'cctbx/sgtbx/direct_space_asu/proto/__init__.py' adding 'cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py' adding 'cctbx/sgtbx/direct_space_asu/proto/tst_asu.py' adding 'cctbx/source_generators/__init__.py' adding 'cctbx/source_generators/flex_fwd_h.py' adding 'cctbx/source_generators/eltbx/__init__.py' adding 'cctbx/source_generators/eltbx/generate_henke_cpp.py' adding 'cctbx/source_generators/eltbx/generate_sasaki_cpp.py' adding 'cctbx/uctbx/__init__.py' adding 'cctbx/uctbx/gruber_1973.py' adding 'cctbx/uctbx/gruber_1973_table_1.py' adding 'cctbx/uctbx/krivy_gruber_1976.py' adding 'cctbx/uctbx/reduction_base.py' adding 'cctbx/uctbx/determine_unit_cell/__init__.py' adding 'cctbx/web/__init__.py' adding 'cctbx/web/all_axes.py' adding 'cctbx/web/browse_settings.py' adding 'cctbx/web/cgi_utils.py' adding 'cctbx/web/change_basis.py' adding 'cctbx/web/change_hand.py' adding 'cctbx/web/change_setting.py' adding 'cctbx/web/dispatcher.py' adding 'cctbx/web/emma.py' adding 'cctbx/web/explore_symmetry.py' adding 'cctbx/web/frac_cart.py' adding 'cctbx/web/io_utils.py' adding 'cctbx/web/iotbx_cif_validate.py' adding 'cctbx/web/lattice_symmetry.py' adding 'cctbx/web/libtbx_help.py' adding 'cctbx/web/multiple_cell.py' adding 'cctbx/web/phase_o_phrenia.py' adding 'cctbx/web/replay.py' adding 'cctbx/web/shelx.py' adding 'cctbx/web/structure_factors.py' adding 'cctbx/web/structure_factors_pdb.py' adding 'cctbx/web/wyckoff.py' adding 'cctbx/web/asu_gallery/__init__.py' adding 'cctbx/web/asu_gallery/guide_to_notation.py' adding 'cctbx/web/asu_gallery/jv_asu.py' adding 'cctbx/web/asu_gallery/jv_index.py' adding 'cctbx/web/asu_gallery/jvx.py' adding 'cctbx/web/asu_gallery/web_links.py' adding 'cctbx/xray/__init__.py' adding 'cctbx/xray/ext.py' adding 'cctbx/xray/minimization.py' adding 'cctbx/xray/observation_types.py' adding 'cctbx/xray/scatterer.py' adding 'cctbx/xray/structure.py' adding 'cctbx/xray/target_functors.py' adding 'cctbx/xray/weighting_schemes.py' adding 'cctbx/xray/observations/__init__.py' adding 'cctbx/xray/observations/tst_observations.py' adding 'cctbx/xray/structure_factors/__init__.py' adding 'cctbx/xray/structure_factors/algorithm.py' adding 'cctbx/xray/structure_factors/from_scatterers.py' adding 'cctbx/xray/structure_factors/from_scatterers_direct.py' adding 'cctbx/xray/structure_factors/from_scatterers_direct_parallel.py' adding 'cctbx/xray/structure_factors/from_scatterers_fft.py' adding 'cctbx/xray/structure_factors/global_counters.py' adding 'cctbx/xray/structure_factors/gradient_flags.py' adding 'cctbx/xray/structure_factors/gradients.py' adding 'cctbx/xray/structure_factors/gradients_base.py' adding 'cctbx/xray/structure_factors/gradients_direct.py' adding 'cctbx/xray/structure_factors/gradients_fft.py' adding 'cctbx/xray/structure_factors/manager.py' adding 'cctbx/xray/structure_factors/misc.py' adding 'cctbx/xray/targets/__init__.py' adding 'cctbx/xray/targets/r1.py' adding 'cctbx/xray/targets/tst_r1.py' adding 'cctbx/xray/targets/tst_shelxl_wght_ls.py' adding 'cctbx-2023.12.dist-info/licenses/LICENSE.txt' adding 'cctbx_website/__init__.py' adding 'cctbx_website/libtbx_refresh.py' adding 'cctbx_website/run_tests.py' adding 'cctbx_website/command_line/__init__.py' adding 'cctbx_website/command_line/comment_to_docstring.py' adding 'cctbx_website/command_line/edit_for_boost.py' adding 'cctbx_website/command_line/edit_html.py' adding 'cctbx_website/command_line/extract_script_from_html_cctbx_doc.py' adding 'cctbx_website/command_line/run_pdoc_cctbx_api.py' adding 'cctbx_website/command_line/tst_comment_to_docstring.py' adding 'cctbx_website/regression/__init__.py' adding 'cctbx_website/regression/exercise.py' adding 'cctbx_website/regression/tst_10_doc_programming_tips_1.py' adding 'cctbx_website/regression/tst_11_script_1.py' adding 'cctbx_website/regression/tst_12_script_compare_ss.py' adding 'cctbx_website/regression/tst_13_script_ideal_ss.py' adding 'cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py' adding 'cctbx_website/regression/tst_15_doc_models_hierarchy.py' adding 'cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py' adding 'cctbx_website/regression/tst_17_script_rfactors.py' adding 'cctbx_website/regression/tst_18_doc_programming_tips_2.py' adding 'cctbx_website/regression/tst_19_doc_programming_tips_3.py' adding 'cctbx_website/regression/tst_1_template.py' adding 'cctbx_website/regression/tst_2_doc_hlo_intro.py' adding 'cctbx_website/regression/tst_3_doc_hlo_model_manager.py' adding 'cctbx_website/regression/tst_4_doc_hlo_data_manager.py' adding 'cctbx_website/regression/tst_5_doc_hlo_map_manager.py' adding 'cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py' adding 'cctbx_website/regression/tst_7_doc_low_flex_advanced.py' adding 'cctbx_website/regression/tst_8_doc_maps_intro.py' adding 'cctbx_website/regression/tst_9_doc_maps_boxing.py' adding 'cctbx_website/regression/tst_py_from_html.py' adding 'cma_es/__init__.py' adding 'cma_es/cma_es_interface.py' adding 'cma_es/run_tests.py' adding 'cma_es/tst_cma_es.py' adding 'cootbx/__init__.py' adding 'cootbx/hydrogens_button.py' adding 'cootbx/interactive_edit.py' adding 'cootbx/ligand_checklist.py' adding 'cootbx/simple_zoom_list.py' adding 'cootbx/validation_lists.py' adding 'cootbx/view_refinement.py' adding 'cootbx/watch_file.py' adding 'cootbx/xmlrpc_server.py' adding 'fable/__init__.py' adding 'fable/cout.py' adding 'fable/equivalence.py' adding 'fable/intrinsics.py' adding 'fable/read.py' adding 'fable/run_tests.py' adding 'fable/simple_compilation.py' adding 'fable/tokenization.py' adding 'fable/tst_cout.py' adding 'fable/tst_cout_compile.py' adding 'fable/tst_equivalence.py' adding 'fable/tst_ext.py' adding 'fable/tst_read.py' adding 'fable/utils.py' adding 'fable/command_line/__init__.py' adding 'fable/command_line/cout.py' adding 'fable/command_line/fem_include_search_paths.py' adding 'fable/command_line/insert_write_at_start_of_each_procedure.py' adding 'fable/command_line/read.py' adding 'fable/command_line/show_calls.py' adding 'fable/command_line/split.py' adding 'fast_linalg/__init__.py' adding 'fftw3tbx/__init__.py' adding 'fftw3tbx/libtbx_refresh.py' adding 'fftw3tbx/tst_ext.py' adding 'gltbx/__init__.py' adding 'gltbx/extract_opengl_specs.py' adding 'gltbx/fonts.py' adding 'gltbx/generate_defines_bpl.py' adding 'gltbx/generate_fonts_ucs_cpp.py' adding 'gltbx/generate_functions_bpl.py' adding 'gltbx/gl.py' adding 'gltbx/gl_managed.py' adding 'gltbx/glu.py' adding 'gltbx/images.py' adding 'gltbx/libtbx_refresh.py' adding 'gltbx/quadrics.py' adding 'gltbx/run_tests.py' adding 'gltbx/tst.py' adding 'gltbx/tst_ellipsoids.py' adding 'gltbx/tst_fonts.py' adding 'gltbx/tst_viewer_utils.py' adding 'gltbx/util.py' adding 'gltbx/viewer_utils.py' adding 'gltbx/wx_cube.py' adding 'gltbx/wx_ellipsoids_test.py' adding 'gltbx/wx_motion_on_tab.py' adding 'gltbx/wx_scene.py' adding 'gltbx/wx_viewer.py' adding 'gltbx/wx_viewer_example.py' adding 'gltbx/wx_viewer_leapmotion.py' adding 'gltbx/wx_viewers_images.py' adding 'gltbx/command_line/__init__.py' adding 'gltbx/command_line/try_imports.py' adding 'iotbx/__init__.py' adding 'iotbx/builders.py' adding 'iotbx/builders_depending_on_smtbx.py' adding 'iotbx/cif_mtz_data_labels.py' adding 'iotbx/cli_parser.py' adding 'iotbx/crystal_symmetry_from_any.py' adding 'iotbx/csv_utils.py' adding 'iotbx/data_plots.py' adding 'iotbx/extract_xtal_data.py' adding 'iotbx/file_reader.py' adding 'iotbx/format.py' adding 'iotbx/libtbx_refresh.py' adding 'iotbx/logfiles.py' adding 'iotbx/map_manager.py' adding 'iotbx/map_model_manager.py' adding 'iotbx/map_tools.py' adding 'iotbx/merging_statistics.py' adding 'iotbx/mtrix_biomt.py' adding 'iotbx/option_parser.py' adding 'iotbx/phases.py' adding 'iotbx/phil.py' adding 'iotbx/poscar.py' adding 'iotbx/pymol.py' adding 'iotbx/ranges.py' adding 'iotbx/reflection_file_converter.py' adding 'iotbx/reflection_file_editor.py' adding 'iotbx/reflection_file_reader.py' adding 'iotbx/reflection_file_utils.py' adding 'iotbx/run_tests.py' adding 'iotbx/simple_parser.py' adding 'iotbx/symmetry.py' adding 'iotbx/table_one.py' adding 'iotbx/wildcard.py' adding 'iotbx/PrettyPrint/__init__.py' adding 'iotbx/PrettyPrint/tables.py' adding 'iotbx/bioinformatics/__init__.py' adding 'iotbx/bioinformatics/alignment_as_hsearch.py' adding 'iotbx/bioinformatics/ebi_wu_blast_xml.py' adding 'iotbx/bioinformatics/homologues.py' adding 'iotbx/bioinformatics/local_blast.py' adding 'iotbx/bioinformatics/ncbi_blast_xml.py' adding 'iotbx/bioinformatics/pdb_info.py' adding 'iotbx/bioinformatics/pubmed.py' adding 'iotbx/bioinformatics/structure.py' adding 'iotbx/bioinformatics/xmlbuild.py' adding 'iotbx/ccp4_map/__init__.py' adding 'iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py' adding 'iotbx/ccp4_map/tst.py' adding 'iotbx/cif/__init__.py' adding 'iotbx/cif/builders.py' adding 'iotbx/cif/citations.py' adding 'iotbx/cif/cod_tools.py' adding 'iotbx/cif/crystal_symmetry_from_cif.py' adding 'iotbx/cif/errors.py' adding 'iotbx/cif/geometry.py' adding 'iotbx/cif/model.py' adding 'iotbx/cif/restraint_file_merge.py' adding 'iotbx/cif/restraints.py' adding 'iotbx/cif/validation.py' adding 'iotbx/cns/__init__.py' adding 'iotbx/cns/crystal_symmetry_from_inp.py' adding 'iotbx/cns/crystal_symmetry_from_sdb.py' adding 'iotbx/cns/crystal_symmetry_utils.py' adding 'iotbx/cns/index_fobs_sigma_reader.py' adding 'iotbx/cns/miller_array.py' adding 'iotbx/cns/pdb_remarks.py' adding 'iotbx/cns/reflection_reader.py' adding 'iotbx/cns/sdb_reader.py' adding 'iotbx/cns/sdb_writer.py' adding 'iotbx/cns/space_group_symbols.py' adding 'iotbx/cns/tst_cns.py' adding 'iotbx/cns/xray_structure.py' adding 'iotbx/command_line/__init__.py' adding 'iotbx/command_line/biomt_reconstruction.py' adding 'iotbx/command_line/blast_pdb.py' adding 'iotbx/command_line/build_phil_cache.py' adding 'iotbx/command_line/cbf_read.py' adding 'iotbx/command_line/cif.as_miller_arrays.py' adding 'iotbx/command_line/cif.as_xray_structure.py' adding 'iotbx/command_line/cif.validate.py' adding 'iotbx/command_line/cif_as_pdb.py' adding 'iotbx/command_line/cns.reflection_reader.py' adding 'iotbx/command_line/cns.sdb_reader.py' adding 'iotbx/command_line/cns.transfer_crystal_symmetry.py' adding 'iotbx/command_line/cns_as_mtz.py' adding 'iotbx/command_line/crystal_symmetry_from_any.py' adding 'iotbx/command_line/csv_as_mtz.py' adding 'iotbx/command_line/dano_as_amplitudes.py' adding 'iotbx/command_line/detector_image_as_png.py' adding 'iotbx/command_line/distance_least_squares.py' adding 'iotbx/command_line/dtrek.to_cns.py' adding 'iotbx/command_line/effective_resolution.py' adding 'iotbx/command_line/emma.py' adding 'iotbx/command_line/explore_metric_symmetry.py' adding 'iotbx/command_line/export_scalepack_unmerged.py' adding 'iotbx/command_line/file_reader.py' adding 'iotbx/command_line/flip_symmetric_amino_acids.py' adding 'iotbx/command_line/french_wilson.py' adding 'iotbx/command_line/get_pubmed_citation.py' adding 'iotbx/command_line/lattice_symmetry.py' adding 'iotbx/command_line/merging_statistics.py' adding 'iotbx/command_line/mtrix_reconstruction.py' adding 'iotbx/command_line/mtz.dump.py' adding 'iotbx/command_line/mtz_as_cif.py' adding 'iotbx/command_line/patterson_map.py' adding 'iotbx/command_line/pdb.as_xray_structure.py' adding 'iotbx/command_line/pdb.b_factor_stats.py' adding 'iotbx/command_line/pdb.box_around_molecule.py' adding 'iotbx/command_line/pdb.hierarchy.py' adding 'iotbx/command_line/pdb.insert_scale_records.py' adding 'iotbx/command_line/pdb.join_fragment_files.py' adding 'iotbx/command_line/pdb.link_as_geometry_restraints_edits.py' adding 'iotbx/command_line/pdb.print_sequence.py' adding 'iotbx/command_line/pdb.superpose_atoms_by_name.py' adding 'iotbx/command_line/pdb.superpose_centers_of_mass.py' adding 'iotbx/command_line/pdb_add_conformations.py' adding 'iotbx/command_line/pdb_as_cif.py' adding 'iotbx/command_line/pdb_as_fasta.py' adding 'iotbx/command_line/pdb_cif_conversion.py' adding 'iotbx/command_line/pdb_get_citation.py' adding 'iotbx/command_line/pdb_labels_comparison.py' adding 'iotbx/command_line/pdb_labels_diff.py' adding 'iotbx/command_line/pdb_remediator.py' adding 'iotbx/command_line/pdb_show_connectivity.py' adding 'iotbx/command_line/pdb_split_models.py' adding 'iotbx/command_line/phil.py' adding 'iotbx/command_line/poscar_as_xray_structure.py' adding 'iotbx/command_line/r_free_flags_accumulation.py' adding 'iotbx/command_line/r_free_flags_as_cns.py' adding 'iotbx/command_line/r_free_flags_completion_simple.py' adding 'iotbx/command_line/reflection_file_converter.py' adding 'iotbx/command_line/reflection_file_editor.py' adding 'iotbx/command_line/reflection_file_reader.py' adding 'iotbx/command_line/reflection_statistics.py' adding 'iotbx/command_line/reindex.py' adding 'iotbx/command_line/shelx.as_cif.py' adding 'iotbx/command_line/shelx.as_xray_structure.py' adding 'iotbx/command_line/shelx.dump_as_python.py' adding 'iotbx/command_line/show_distances.py' adding 'iotbx/command_line/show_systematic_absences.py' adding 'iotbx/command_line/simple_map_coefficients.py' adding 'iotbx/command_line/sort_atoms.py' adding 'iotbx/command_line/split_data_cif.py' adding 'iotbx/command_line/symmetry_search.py' adding 'iotbx/command_line/unique_with_biomt.py' adding 'iotbx/command_line/xplor.map.show_summary.py' adding 'iotbx/data_manager/__init__.py' adding 'iotbx/data_manager/common.py' adding 'iotbx/data_manager/json.py' adding 'iotbx/data_manager/map_coefficients.py' adding 'iotbx/data_manager/miller_array.py' adding 'iotbx/data_manager/model.py' adding 'iotbx/data_manager/ncs_spec.py' adding 'iotbx/data_manager/phil.py' adding 'iotbx/data_manager/real_map.py' adding 'iotbx/data_manager/restraint.py' adding 'iotbx/data_manager/sequence.py' adding 'iotbx/data_manager/yaml.py' adding 'iotbx/detectors/__init__.py' adding 'iotbx/detectors/active_area_filter.py' adding 'iotbx/detectors/adsc.py' adding 'iotbx/detectors/adsc_minicbf.py' adding 'iotbx/detectors/adsc_module.py' adding 'iotbx/detectors/beam_center_convention.py' adding 'iotbx/detectors/bruker.py' adding 'iotbx/detectors/cbf.py' adding 'iotbx/detectors/cspad_detector_formats.py' adding 'iotbx/detectors/detectorbase.py' adding 'iotbx/detectors/dtrek.py' adding 'iotbx/detectors/edf.py' adding 'iotbx/detectors/eiger.py' adding 'iotbx/detectors/eiger_minicbf.py' adding 'iotbx/detectors/generic_detector.py' adding 'iotbx/detectors/hamamatsu.py' adding 'iotbx/detectors/image_from_http_request.py' adding 'iotbx/detectors/macscience.py' adding 'iotbx/detectors/mar.py' adding 'iotbx/detectors/marIP.py' adding 'iotbx/detectors/noir.py' adding 'iotbx/detectors/npy.py' adding 'iotbx/detectors/pilatus_minicbf.py' adding 'iotbx/detectors/pilatus_slice.py' adding 'iotbx/detectors/raxis.py' adding 'iotbx/detectors/raxis_nonsquare.py' adding 'iotbx/detectors/raxisbase.py' adding 'iotbx/detectors/saturn.py' adding 'iotbx/detectors/test_mar.py' adding 'iotbx/detectors/test_raxis2.py' adding 'iotbx/detectors/tst_adsc.py' adding 'iotbx/detectors/tst_cbf_comp_read_meth.py' adding 'iotbx/detectors/tst_debug_write.py' adding 'iotbx/detectors/tst_detectors.py' adding 'iotbx/detectors/tst_py_cbf.py' adding 'iotbx/detectors/url_support.py' adding 'iotbx/detectors/context/__init__.py' adding 'iotbx/detectors/context/camera_convention.py' adding 'iotbx/detectors/context/config_detector.py' adding 'iotbx/detectors/context/endstation.py' adding 'iotbx/detectors/context/endstation_max_iv_trial.py' adding 'iotbx/detectors/context/spot_xy_convention.py' adding 'iotbx/detectors/util/__init__.py' adding 'iotbx/detectors/util/filters.py' adding 'iotbx/dsn6/__init__.py' adding 'iotbx/dsn6/tst.py' adding 'iotbx/dtrek/__init__.py' adding 'iotbx/dtrek/crystal_symmetry_from_ref.py' adding 'iotbx/dtrek/dtrek_symmetry_dict.py' adding 'iotbx/dtrek/reflnlist_reader.py' adding 'iotbx/examples/__init__.py' adding 'iotbx/examples/direct_methods_light.py' adding 'iotbx/examples/libtbx_phil_examples.py' adding 'iotbx/examples/mtz_convert_free_to_work.py' adding 'iotbx/examples/mtz_free_flipper.py' adding 'iotbx/examples/pdb_hierarchy.py' adding 'iotbx/examples/pdb_shake.py' adding 'iotbx/examples/pdb_split_chains.py' adding 'iotbx/examples/pdb_symmetry_copies.py' adding 'iotbx/examples/pdb_tardy_conf_sampling_simple.py' adding 'iotbx/examples/pdb_to_map_simple.py' adding 'iotbx/examples/pdbx_mmcif_tutorial.py' adding 'iotbx/examples/prepare_model_for_rsr.py' adding 'iotbx/examples/recalculate_phenix_refine_r_factors.py' adding 'iotbx/examples/shelx_latt_sym_to_space_group_symbol.py' adding 'iotbx/examples/tst_mtz_free_flipper.py' adding 'iotbx/examples/pdb_truncate_to_ala/__init__.py' adding 'iotbx/examples/pdb_truncate_to_ala/tst.py' adding 'iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py' adding 'iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py' adding 'iotbx/examples/pdb_truncate_to_ala/v2_simple.py' adding 'iotbx/examples/pdb_truncate_to_ala/v3_better.py' adding 'iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py' adding 'iotbx/file_io/__init__.py' adding 'iotbx/file_io/_maps.py' adding 'iotbx/file_io/detection.py' adding 'iotbx/file_io/reader.py' adding 'iotbx/file_io/text_detection.py' adding 'iotbx/fullprof/__init__.py' adding 'iotbx/fullprof/read_pcr.py' adding 'iotbx/fullprof/write_pcr.py' adding 'iotbx/gui_tools/__init__.py' adding 'iotbx/gui_tools/cif_conversions.py' adding 'iotbx/gui_tools/import_data_and_flags.py' adding 'iotbx/gui_tools/models.py' adding 'iotbx/gui_tools/reflections.py' adding 'iotbx/gui_tools/tst.py' adding 'iotbx/kriber/__init__.py' adding 'iotbx/kriber/strudat.py' adding 'iotbx/kriber/tst_strudat.py' adding 'iotbx/mrcfile/__init__.py' adding 'iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py' adding 'iotbx/mtz/__init__.py' adding 'iotbx/mtz/crystal_symmetry_from_mtz.py' adding 'iotbx/mtz/extract_from_symmetry_lib.py' adding 'iotbx/mtz/tst.py' adding 'iotbx/mtz/tst_dano.py' adding 'iotbx/mtz/tst_ext.py' adding 'iotbx/mtz/tst_extract_from_symmetry_lib.py' adding 'iotbx/mtz/tst_miller_dict.py' adding 'iotbx/mtz/tst_unmerged.py' adding 'iotbx/ncs/__init__.py' adding 'iotbx/pdb/__init__.py' adding 'iotbx/pdb/aa_utils.py' adding 'iotbx/pdb/amino_acid_codes.py' adding 'iotbx/pdb/atom_name_interpretation.py' adding 'iotbx/pdb/atom_selection.py' adding 'iotbx/pdb/cryst1_interpretation.py' adding 'iotbx/pdb/crystal_symmetry_from_pdb.py' adding 'iotbx/pdb/download.py' adding 'iotbx/pdb/experiment_type.py' adding 'iotbx/pdb/extract_rfactors_resolutions_sigma.py' adding 'iotbx/pdb/fetch.py' adding 'iotbx/pdb/forward_compatible_pdb_cif_conversion.py' adding 'iotbx/pdb/hierarchy.py' adding 'iotbx/pdb/hybrid_36.py' adding 'iotbx/pdb/misc_records_output.py' adding 'iotbx/pdb/mmcif.py' adding 'iotbx/pdb/modified_aa_names.py' adding 'iotbx/pdb/modified_rna_dna_names.py' adding 'iotbx/pdb/nucleic_acid_codes.py' adding 'iotbx/pdb/pdb_v3_cif_conversion.py' adding 'iotbx/pdb/pdbe.py' adding 'iotbx/pdb/rcsb.py' adding 'iotbx/pdb/records.py' adding 'iotbx/pdb/remark_290_interpretation.py' adding 'iotbx/pdb/remark_2_interpretation.py' adding 'iotbx/pdb/remark_3_interpretation.py' adding 'iotbx/pdb/rna_dna_detection.py' adding 'iotbx/pdb/secondary_structure.py' adding 'iotbx/pdb/tst_atom_name_interpretation.py' adding 'iotbx/pdb/tst_atom_selection.py' adding 'iotbx/pdb/tst_atom_selection_string.py' adding 'iotbx/pdb/tst_ext.py' adding 'iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py' adding 'iotbx/pdb/tst_hierarchy.py' adding 'iotbx/pdb/tst_hierarchy_atom_sort.py' adding 'iotbx/pdb/tst_hierarchy_flip_symmetric.py' adding 'iotbx/pdb/tst_hierarchy_flip_symmetric_2.py' adding 'iotbx/pdb/tst_input_pickling.py' adding 'iotbx/pdb/tst_mmcif.py' adding 'iotbx/pdb/tst_mmcif_hierarchy.py' adding 'iotbx/pdb/tst_mmcif_hierarchy_2.py' adding 'iotbx/pdb/tst_pdb.py' adding 'iotbx/pdb/tst_read_mtrix_records_from_cif.py' adding 'iotbx/pdb/tst_rna_dna_atom_names.py' adding 'iotbx/pdb/tst_secondary_structure.py' adding 'iotbx/pdb/tst_secondary_structure_2.py' adding 'iotbx/pdb/tst_tls.py' adding 'iotbx/pdb/tst_utils.py' adding 'iotbx/pdb/utils.py' adding 'iotbx/pdb/web_service_api.py' adding 'iotbx/pdb/xray_structure.py' adding 'iotbx/pdb/remediation/__init__.py' adding 'iotbx/pdb/remediation/remediator.py' adding 'iotbx/pdb/remediation/tst_remediator.py' adding 'iotbx/programs/__init__.py' adding 'iotbx/programs/box_around_molecule.py' adding 'iotbx/programs/split_data_cif.py' adding 'iotbx/programs/unique_with_biomt.py' adding 'iotbx/regression/__init__.py' adding 'iotbx/regression/tst_add_conformations.py' adding 'iotbx/regression/tst_all_chain_ids.py' adding 'iotbx/regression/tst_atom_selections_10k.py' adding 'iotbx/regression/tst_bioinformatics.py' adding 'iotbx/regression/tst_box_around_molecule.py' adding 'iotbx/regression/tst_cif_1.py' adding 'iotbx/regression/tst_cif_as_pdb_1atom.py' adding 'iotbx/regression/tst_cli_parser.py' adding 'iotbx/regression/tst_crystal_symmetry_from_any.py' adding 'iotbx/regression/tst_csv_utils.py' adding 'iotbx/regression/tst_data_manager.py' adding 'iotbx/regression/tst_data_plots.py' adding 'iotbx/regression/tst_examples.py' adding 'iotbx/regression/tst_export_scalepack_unmerged.py' adding 'iotbx/regression/tst_extract_xtal_data.py' adding 'iotbx/regression/tst_fetch.py' adding 'iotbx/regression/tst_file_io.py' adding 'iotbx/regression/tst_file_reader.py' adding 'iotbx/regression/tst_generate_n_char_string.py' adding 'iotbx/regression/tst_group_rounding.py' adding 'iotbx/regression/tst_hierarchy_altlocs.py' adding 'iotbx/regression/tst_hierarchy_copy_select.py' adding 'iotbx/regression/tst_hierarchy_forward_compatible_pdb.py' adding 'iotbx/regression/tst_hierarchy_id_str.py' adding 'iotbx/regression/tst_hierarchy_long_chain_ids_1.py' adding 'iotbx/regression/tst_hierarchy_long_resname_1.py' adding 'iotbx/regression/tst_hierarchy_long_resname_2.py' adding 'iotbx/regression/tst_hierarchy_long_resname_3.py' adding 'iotbx/regression/tst_hierarchy_long_resname_4.py' adding 'iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py' adding 'iotbx/regression/tst_hierarchy_occupancies_rounding.py' adding 'iotbx/regression/tst_hierarchy_pdb_v3.py' adding 'iotbx/regression/tst_lattice_symmetry.py' adding 'iotbx/regression/tst_map_manager.py' adding 'iotbx/regression/tst_map_manager_2.py' adding 'iotbx/regression/tst_map_manager_wrapping.py' adding 'iotbx/regression/tst_map_model_manager.py' adding 'iotbx/regression/tst_map_model_manager_2.py' adding 'iotbx/regression/tst_map_model_manager_3.py' adding 'iotbx/regression/tst_map_model_manager_4.py' adding 'iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py' adding 'iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py' adding 'iotbx/regression/tst_map_model_manager_call_consistency.py' adding 'iotbx/regression/tst_map_model_manager_cif.py' adding 'iotbx/regression/tst_map_model_manager_external_sharpening_7.py' adding 'iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py' adding 'iotbx/regression/tst_map_model_manager_local_resolution_10.py' adding 'iotbx/regression/tst_map_model_manager_model_sharpening_5.py' adding 'iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py' adding 'iotbx/regression/tst_map_model_manager_tls_from_map_8.py' adding 'iotbx/regression/tst_map_tools.py' adding 'iotbx/regression/tst_merging_statistics.py' adding 'iotbx/regression/tst_miller_sort_asu.py' adding 'iotbx/regression/tst_mmcif_input.py' adding 'iotbx/regression/tst_mmcif_multimodel.py' adding 'iotbx/regression/tst_mmcif_segids.py' adding 'iotbx/regression/tst_mmcif_to_from_hierarchy.py' adding 'iotbx/regression/tst_mrc_io.py' adding 'iotbx/regression/tst_mtz_as_cif.py' adding 'iotbx/regression/tst_patterson.py' adding 'iotbx/regression/tst_pdb_as_cif.py' adding 'iotbx/regression/tst_pdb_as_fasta.py' adding 'iotbx/regression/tst_pdb_cif_cells.py' adding 'iotbx/regression/tst_pdb_cif_inputs.py' adding 'iotbx/regression/tst_pdb_link_records.py' adding 'iotbx/regression/tst_pdbx_mmcif_tutorial.py' adding 'iotbx/regression/tst_phases.py' adding 'iotbx/regression/tst_phil.py' adding 'iotbx/regression/tst_poscar.py' adding 'iotbx/regression/tst_reflection_file_editor.py' adding 'iotbx/regression/tst_reflection_file_reader.py' adding 'iotbx/regression/tst_reflection_file_utils.py' adding 'iotbx/regression/tst_reflection_statistics.py' adding 'iotbx/regression/tst_reindex.py' adding 'iotbx/regression/tst_restraints_merge.py' adding 'iotbx/regression/tst_selected_hierarchy_flip.py' adding 'iotbx/regression/tst_show_systematic_absences.py' adding 'iotbx/regression/tst_simple_map_coefficients.py' adding 'iotbx/regression/tst_simple_parser.py' adding 'iotbx/regression/tst_sort_atoms.py' adding 'iotbx/regression/tst_split_data_cif.py' adding 'iotbx/regression/tst_split_models.py' adding 'iotbx/regression/tst_symmetry.py' adding 'iotbx/regression/tst_text_detection.py' adding 'iotbx/regression/tst_wildcard.py' adding 'iotbx/regression/tst_xray_scale.py' adding 'iotbx/regression/utils.py' adding 'iotbx/regression/ncs/__init__.py' adding 'iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py' adding 'iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py' adding 'iotbx/regression/ncs/tst_ncs.py' adding 'iotbx/regression/ncs/tst_ncs_groups_preprocessing.py' adding 'iotbx/regression/ncs/tst_ncs_input.py' adding 'iotbx/regression/ncs/tst_ncs_input_preserves_iseqs.py' adding 'iotbx/regression/ncs/tst_ncs_reordered_chains.py' adding 'iotbx/regression/ncs/tst_ncs_search_broken_chain.py' adding 'iotbx/regression/ncs/tst_ncs_search_ligs.py' adding 'iotbx/regression/ncs/tst_ncs_search_shortcut_1.py' adding 'iotbx/regression/ncs/tst_ncs_user_selections.py' adding 'iotbx/regression/ncs/tst_ncs_without_validation.py' adding 'iotbx/scalepack/__init__.py' adding 'iotbx/scalepack/crystal_symmetry_from_hkl.py' adding 'iotbx/scalepack/merge.py' adding 'iotbx/scalepack/no_merge_original_index.py' adding 'iotbx/scalepack/space_group_dictionary.py' adding 'iotbx/scalepack/tst_merge.py' adding 'iotbx/scalepack/tst_no_merge_original_index.py' adding 'iotbx/shelx/__init__.py' adding 'iotbx/shelx/crystal_symmetry_from_ins.py' adding 'iotbx/shelx/errors.py' adding 'iotbx/shelx/fcf.py' adding 'iotbx/shelx/fvar_encoding.py' adding 'iotbx/shelx/hklf.py' adding 'iotbx/shelx/lexer.py' adding 'iotbx/shelx/parsers.py' adding 'iotbx/shelx/tokens.py' adding 'iotbx/shelx/tst_fvar_encoding.py' adding 'iotbx/shelx/tst_hklf.py' adding 'iotbx/shelx/tst_lex_parse_build.py' adding 'iotbx/shelx/tst_writer.py' adding 'iotbx/shelx/write_ins.py' adding 'iotbx/shelx/writer.py' adding 'iotbx/solve/__init__.py' adding 'iotbx/solve/crystal_symmetry_from_inp.py' adding 'iotbx/solve/fpfm_reader.py' adding 'iotbx/xds/__init__.py' adding 'iotbx/xds/blank_cbf.py' adding 'iotbx/xds/correction.py' adding 'iotbx/xds/crystal_symmetry_from_hkl.py' adding 'iotbx/xds/gain_cbf.py' adding 'iotbx/xds/geometry.py' adding 'iotbx/xds/integrate_hkl.py' adding 'iotbx/xds/read_ascii.py' adding 'iotbx/xds/spot_xds.py' adding 'iotbx/xds/xds_cbf.py' adding 'iotbx/xds/xds_inp.py' adding 'iotbx/xds/xparm.py' adding 'iotbx/xplor/__init__.py' adding 'iotbx/xplor/crystal_symmetry_from_map.py' adding 'iotbx/xplor/ext.py' adding 'iotbx/xplor/map.py' adding 'iotbx/xplor/tst_xplormap.py' adding 'libtbx/__init__.py' adding 'libtbx/assert_utils.py' adding 'libtbx/binary_search.py' adding 'libtbx/callbacks.py' adding 'libtbx/citations.py' adding 'libtbx/clear_paths.py' adding 'libtbx/cli.py' adding 'libtbx/cluster.py' adding 'libtbx/clusterTests.py' adding 'libtbx/code_analysis.py' adding 'libtbx/complex_math.py' adding 'libtbx/configure.py' adding 'libtbx/console_utils.py' adding 'libtbx/containers.py' adding 'libtbx/cpp_function_name.py' adding 'libtbx/crossmingw.py' adding 'libtbx/dlite.py' adding 'libtbx/easy_mp.py' adding 'libtbx/easy_pickle.py' adding 'libtbx/easy_profile.py' adding 'libtbx/easy_run.py' adding 'libtbx/env_config.py' adding 'libtbx/file_clutter.py' adding 'libtbx/find_reference_cycles.py' adding 'libtbx/forward_compatibility.py' adding 'libtbx/introspection.py' adding 'libtbx/libtbx_refresh.py' adding 'libtbx/load_env.py' adding 'libtbx/log.py' adding 'libtbx/math_utils.py' adding 'libtbx/metric_prefixes.py' adding 'libtbx/mpi4py.py' adding 'libtbx/object_oriented_patterns.py' adding 'libtbx/objgraph.py' adding 'libtbx/option_parser.py' adding 'libtbx/path.py' adding 'libtbx/pkg_utils.py' adding 'libtbx/program_template.py' adding 'libtbx/progress.py' adding 'libtbx/pyframe.py' adding 'libtbx/pyplot.py' adding 'libtbx/python_code_parsing.py' adding 'libtbx/resource_monitor.py' adding 'libtbx/run_tests.py' adding 'libtbx/runtime_utils.py' adding 'libtbx/simplexml.py' adding 'libtbx/smart_open.py' adding 'libtbx/start_print_trace.py' adding 'libtbx/str_utils.py' adding 'libtbx/subprocess_with_fixes.py' adding 'libtbx/table_utils.py' adding 'libtbx/thread_utils.py' adding 'libtbx/topological_sort.py' adding 'libtbx/try_hello_world_c.py' adding 'libtbx/tst_add_docstrings_with_ai.py' adding 'libtbx/tst_binary_search.py' adding 'libtbx/tst_citation_encoding.py' adding 'libtbx/tst_citations.py' adding 'libtbx/tst_conda_dispatcher.py' adding 'libtbx/tst_containers.py' adding 'libtbx/tst_dlite.py' adding 'libtbx/tst_easy_mp.py' adding 'libtbx/tst_easy_mp_multicore.py' adding 'libtbx/tst_easy_mp_state.py' adding 'libtbx/tst_easy_pickle.py' adding 'libtbx/tst_find_unused_imports.py' adding 'libtbx/tst_fully_buffered_timeout.py' adding 'libtbx/tst_guided_coding.py' adding 'libtbx/tst_mahalanobis.py' adding 'libtbx/tst_math_utils.py' adding 'libtbx/tst_object_oriented_patterns.py' adding 'libtbx/tst_path.py' adding 'libtbx/tst_program_template.py' adding 'libtbx/tst_python_code_parsing.py' adding 'libtbx/tst_representation.py' adding 'libtbx/tst_run_tests_parallel_retry.py' adding 'libtbx/tst_run_tests_parallel_unique_dirs.py' adding 'libtbx/tst_runtime_utils.py' adding 'libtbx/tst_scheduling.py' adding 'libtbx/tst_str_utils.py' adding 'libtbx/tst_t96_roster.py' adding 'libtbx/tst_thread_utils.py' adding 'libtbx/tst_topological_sort.py' adding 'libtbx/tst_utils.py' adding 'libtbx/tst_version.py' adding 'libtbx/tst_word_index_generator.py' adding 'libtbx/tst_xmlrpc_utils.py' adding 'libtbx/utils.py' adding 'libtbx/version.py' adding 'libtbx/wingide.py' adding 'libtbx/word_index_generator.py' adding 'libtbx/xmlrpc_server_example.py' adding 'libtbx/xmlrpc_utils.py' adding 'libtbx/auto_build/__init__.py' adding 'libtbx/auto_build/bootstrap.py' adding 'libtbx/auto_build/create_cctbx_bundle_for_installer.py' adding 'libtbx/auto_build/create_installer.py' adding 'libtbx/auto_build/create_mac_app.py' adding 'libtbx/auto_build/create_mac_pkg.py' adding 'libtbx/auto_build/create_windows_exe.py' adding 'libtbx/auto_build/create_windows_installer.py' adding 'libtbx/auto_build/install_base_packages.py' adding 'libtbx/auto_build/install_conda.py' adding 'libtbx/auto_build/install_distribution.py' adding 'libtbx/auto_build/installer_utils.py' adding 'libtbx/auto_build/make_bundle.py' adding 'libtbx/auto_build/package_defs.py' adding 'libtbx/auto_build/plus_installer.py' adding 'libtbx/auto_build/regenerate_module_files.py' adding 'libtbx/auto_build/rpath.py' adding 'libtbx/auto_build/setup_installer.py' adding 'libtbx/auto_build/write_gui_dispatcher_include.py' adding 'libtbx/bundle/__init__.py' adding 'libtbx/bundle/copy_all.py' adding 'libtbx/bundle/copy_build_libtbx.py' adding 'libtbx/bundle/copy_runtime_sources.py' adding 'libtbx/bundle/install_bat.py' adding 'libtbx/bundle/install_csh.py' adding 'libtbx/bundle/utils.py' adding 'libtbx/command_line/__init__.py' adding 'libtbx/command_line/add_docstrings_with_ai.py' adding 'libtbx/command_line/analyse_code_comments.py' adding 'libtbx/command_line/any2unix.py' adding 'libtbx/command_line/assert_line_count.py' adding 'libtbx/command_line/assert_not_show_diff.py' adding 'libtbx/command_line/assert_stdin.py' adding 'libtbx/command_line/assert_stdin_contains_strings.py' adding 'libtbx/command_line/assert_stdin_ends_with.py' adding 'libtbx/command_line/bootstrap.py' adding 'libtbx/command_line/bundle_as_exe.py' adding 'libtbx/command_line/cctbx_chunk.py' adding 'libtbx/command_line/check_libcpp.py' adding 'libtbx/command_line/clean_clutter.py' adding 'libtbx/command_line/clear_paths.py' adding 'libtbx/command_line/create_cctbx_bundle_for_installer.py' adding 'libtbx/command_line/create_install_script_bat.py' adding 'libtbx/command_line/create_installer.py' adding 'libtbx/command_line/create_mac_app.py' adding 'libtbx/command_line/create_selfx.py' adding 'libtbx/command_line/create_unzipsfx.py' adding 'libtbx/command_line/create_windows_exe.py' adding 'libtbx/command_line/dtrace.py' adding 'libtbx/command_line/easy_qsub.py' adding 'libtbx/command_line/env_run.py' adding 'libtbx/command_line/epydoc_run.py' adding 'libtbx/command_line/extract_code_from_txt.py' adding 'libtbx/command_line/find_clutter.py' adding 'libtbx/command_line/find_files.py' adding 'libtbx/command_line/find_in_repositories.py' adding 'libtbx/command_line/find_old_style_classes.py' adding 'libtbx/command_line/find_pdb_mmcif_problems.py' adding 'libtbx/command_line/find_reserved_names.py' adding 'libtbx/command_line/find_under_build.py' adding 'libtbx/command_line/find_untested.py' adding 'libtbx/command_line/find_unused_imports.py' adding 'libtbx/command_line/find_unused_imports_crude.py' adding 'libtbx/command_line/git_avoid_merges.py' adding 'libtbx/command_line/help.py' adding 'libtbx/command_line/import_all_ext.py' adding 'libtbx/command_line/import_all_python.py' adding 'libtbx/command_line/install.py' adding 'libtbx/command_line/install_conda.py' adding 'libtbx/command_line/ipython_shell_start.py' adding 'libtbx/command_line/line_count.py' adding 'libtbx/command_line/list_files.py' adding 'libtbx/command_line/list_modules.py' adding 'libtbx/command_line/list_source_files_sorted_by_size.py' adding 'libtbx/command_line/make_dist.py' adding 'libtbx/command_line/make_sphinx_html.py' adding 'libtbx/command_line/nequal.py' adding 'libtbx/command_line/parallel_simple.py' adding 'libtbx/command_line/path_utility.py' adding 'libtbx/command_line/phil.py' adding 'libtbx/command_line/prime_factors_of.py' adding 'libtbx/command_line/printenv.py' adding 'libtbx/command_line/py_compile_all.py' adding 'libtbx/command_line/raise_exception_for_testing.py' adding 'libtbx/command_line/reindent.py' adding 'libtbx/command_line/remote_processing.py' adding 'libtbx/command_line/remove_tree.py' adding 'libtbx/command_line/remove_unused_imports.py' adding 'libtbx/command_line/resource_monitor_plot.py' adding 'libtbx/command_line/run_pickled_function.py' adding 'libtbx/command_line/run_tests_parallel.py' adding 'libtbx/command_line/scons.py' adding 'libtbx/command_line/seconds_since_the_epoch.py' adding 'libtbx/command_line/sge_available_slots.py' adding 'libtbx/command_line/sge_qstat_counts.py' adding 'libtbx/command_line/show_all_on_path.py' adding 'libtbx/command_line/show_bin_path.py' adding 'libtbx/command_line/show_build_options.py' adding 'libtbx/command_line/show_build_path.py' adding 'libtbx/command_line/show_but_no_repr.py' adding 'libtbx/command_line/show_commands.py' adding 'libtbx/command_line/show_date_and_time.py' adding 'libtbx/command_line/show_dist_paths.py' adding 'libtbx/command_line/show_env.py' adding 'libtbx/command_line/show_environ_usage.py' adding 'libtbx/command_line/show_full_command_path.py' adding 'libtbx/command_line/show_host_and_user.py' adding 'libtbx/command_line/show_include_paths.py' adding 'libtbx/command_line/show_lib_path.py' adding 'libtbx/command_line/show_module_dependencies.py' adding 'libtbx/command_line/show_number_of_processors.py' adding 'libtbx/command_line/show_numeric_version.py' adding 'libtbx/command_line/show_numpy_version.py' adding 'libtbx/command_line/show_python_dependencies.py' adding 'libtbx/command_line/show_python_sys_executable.py' adding 'libtbx/command_line/show_pythonpath.py' adding 'libtbx/command_line/show_repository_paths.py' adding 'libtbx/command_line/show_tests.py' adding 'libtbx/command_line/show_variable_names.py' adding 'libtbx/command_line/sphinx_build.py' adding 'libtbx/command_line/start_binary_bundle.py' adding 'libtbx/command_line/start_process.py' adding 'libtbx/command_line/wait_for_file.py' adding 'libtbx/development/__init__.py' adding 'libtbx/development/except_Exception.py' adding 'libtbx/development/timers.py' adding 'libtbx/development/xcode_build_phase.py' adding 'libtbx/jobs/__init__.py' adding 'libtbx/jobs/fake_slurm.py' adding 'libtbx/jobs/manager.py' adding 'libtbx/jobs/tst_batch.py' adding 'libtbx/jobs/tst_local.py' adding 'libtbx/jobs/tst_manager.py' adding 'libtbx/jobs/tst_slurm.py' adding 'libtbx/jobs/backends/__init__.py' adding 'libtbx/jobs/backends/base.py' adding 'libtbx/jobs/backends/batch.py' adding 'libtbx/jobs/backends/local.py' adding 'libtbx/jobs/backends/slurm.py' adding 'libtbx/langchain/__init__.py' adding 'libtbx/langchain/phenix_knowledge.py' adding 'libtbx/langchain/run_build_db.py' adding 'libtbx/langchain/run_inspect_db.py' adding 'libtbx/langchain/run_query_docs.py' adding 'libtbx/langchain/agent/__init__.py' adding 'libtbx/langchain/agent/advice_preprocessor.py' adding 'libtbx/langchain/agent/api_client.py' adding 'libtbx/langchain/agent/best_files_tracker.py' adding 'libtbx/langchain/agent/command_builder.py' adding 'libtbx/langchain/agent/command_postprocessor.py' adding 'libtbx/langchain/agent/config_loader.py' adding 'libtbx/langchain/agent/contract.py' adding 'libtbx/langchain/agent/directive_extractor.py' adding 'libtbx/langchain/agent/directive_validator.py' adding 'libtbx/langchain/agent/display_data_model.py' adding 'libtbx/langchain/agent/docs_tools.py' adding 'libtbx/langchain/agent/dry_run_manager.py' adding 'libtbx/langchain/agent/error_analyzer.py' adding 'libtbx/langchain/agent/error_classifier.py' adding 'libtbx/langchain/agent/event_formatter.py' adding 'libtbx/langchain/agent/event_log.py' adding 'libtbx/langchain/agent/failure_diagnoser.py' adding 'libtbx/langchain/agent/file_metadata.py' adding 'libtbx/langchain/agent/file_utils.py' adding 'libtbx/langchain/agent/format_validation.py' adding 'libtbx/langchain/agent/gate_evaluator.py' adding 'libtbx/langchain/agent/generate_logic_doc.py' adding 'libtbx/langchain/agent/generate_safety_docs.py' adding 'libtbx/langchain/agent/graph.py' adding 'libtbx/langchain/agent/graph_nodes.py' adding 'libtbx/langchain/agent/graph_state.py' adding 'libtbx/langchain/agent/hypothesis_evaluator.py' adding 'libtbx/langchain/agent/intent_classifier.py' adding 'libtbx/langchain/agent/kb_tags.py' adding 'libtbx/langchain/agent/log_section_extractor.py' adding 'libtbx/langchain/agent/memory.py' adding 'libtbx/langchain/agent/metric_evaluator.py' adding 'libtbx/langchain/agent/metrics_analyzer.py' adding 'libtbx/langchain/agent/mtz_inspector.py' adding 'libtbx/langchain/agent/nl_to_phil.py' adding 'libtbx/langchain/agent/pattern_manager.py' adding 'libtbx/langchain/agent/perceive_checks.py' adding 'libtbx/langchain/agent/phenix_utils.py' adding 'libtbx/langchain/agent/phil_validator.py' adding 'libtbx/langchain/agent/placement_checker.py' adding 'libtbx/langchain/agent/plan_generator.py' adding 'libtbx/langchain/agent/planner.py' adding 'libtbx/langchain/agent/program_registry.py' adding 'libtbx/langchain/agent/program_validator.py' adding 'libtbx/langchain/agent/r_factors.py' adding 'libtbx/langchain/agent/rate_limit_handler.py' adding 'libtbx/langchain/agent/raw_advice_scanner.py' adding 'libtbx/langchain/agent/rules_selector.py' adding 'libtbx/langchain/agent/sanity_checker.py' adding 'libtbx/langchain/agent/session.py' adding 'libtbx/langchain/agent/session_tools.py' adding 'libtbx/langchain/agent/strategy_memory.py' adding 'libtbx/langchain/agent/structure_model.py' adding 'libtbx/langchain/agent/template_builder.py' adding 'libtbx/langchain/agent/thinking_agent.py' adding 'libtbx/langchain/agent/transport.py' adding 'libtbx/langchain/agent/tst_agent_enhancements.py' adding 'libtbx/langchain/agent/utils.py' adding 'libtbx/langchain/agent/validation_history.py' adding 'libtbx/langchain/agent/validation_inspector.py' adding 'libtbx/langchain/agent/workflow_engine.py' adding 'libtbx/langchain/agent/workflow_state.py' adding 'libtbx/langchain/agent/yaml_tools.py' adding 'libtbx/langchain/analysis/__init__.py' adding 'libtbx/langchain/analysis/agent_session_analyzer.py' adding 'libtbx/langchain/analysis/analysis_request.py' adding 'libtbx/langchain/analysis/analyzer.py' adding 'libtbx/langchain/analysis/log_info.py' adding 'libtbx/langchain/analysis/orientation_strip.py' adding 'libtbx/langchain/analysis/program_identity.py' adding 'libtbx/langchain/analysis/report_verifier.py' adding 'libtbx/langchain/analysis/state_extractor.py' adding 'libtbx/langchain/analysis/summarizer.py' adding 'libtbx/langchain/commands/__init__.py' adding 'libtbx/langchain/commands/base.py' adding 'libtbx/langchain/core/__init__.py' adding 'libtbx/langchain/core/_build_info.py' adding 'libtbx/langchain/core/_version.py' adding 'libtbx/langchain/core/llm.py' adding 'libtbx/langchain/core/types.py' adding 'libtbx/langchain/examples/__init__.py' adding 'libtbx/langchain/knowledge/__init__.py' adding 'libtbx/langchain/knowledge/api_schema.py' adding 'libtbx/langchain/knowledge/explanation_prompts.py' adding 'libtbx/langchain/knowledge/html_report_template.py' adding 'libtbx/langchain/knowledge/kb_loader.py' adding 'libtbx/langchain/knowledge/metric_patterns.py' adding 'libtbx/langchain/knowledge/phenix_programs.py' adding 'libtbx/langchain/knowledge/plan_schema.py' adding 'libtbx/langchain/knowledge/plan_template_loader.py' adding 'libtbx/langchain/knowledge/program_registration.py' adding 'libtbx/langchain/knowledge/prompts.py' adding 'libtbx/langchain/knowledge/prompts_hybrid.py' adding 'libtbx/langchain/knowledge/summary_display.py' adding 'libtbx/langchain/knowledge/thinking_prompts.py' adding 'libtbx/langchain/knowledge/yaml_loader.py' adding 'libtbx/langchain/log_extraction/__init__.py' adding 'libtbx/langchain/log_extraction/corpus_paths.py' adding 'libtbx/langchain/log_extraction/log_structure_extractor.py' adding 'libtbx/langchain/log_extraction/run_controls.py' adding 'libtbx/langchain/log_extraction/run_measurements.py' adding 'libtbx/langchain/log_extraction/validate.py' adding 'libtbx/langchain/rag/__init__.py' adding 'libtbx/langchain/rag/_chroma_resilience.py' adding 'libtbx/langchain/rag/document_loader.py' adding 'libtbx/langchain/rag/retriever.py' adding 'libtbx/langchain/rag/vector_store.py' adding 'libtbx/langchain/strategies/__init__.py' adding 'libtbx/langchain/strategies/base.py' adding 'libtbx/langchain/tests/__init__.py' adding 'libtbx/langchain/tests/analyze_tutorial_runs.py' adding 'libtbx/langchain/tests/audit_phase_rename.py' adding 'libtbx/langchain/tests/canary_utils.py' adding 'libtbx/langchain/tests/run_all_tests.py' adding 'libtbx/langchain/tests/test_api_keys.py' adding 'libtbx/langchain/tests/tst_abort_message_all_stops.py' adding 'libtbx/langchain/tests/tst_action_item_1.py' adding 'libtbx/langchain/tests/tst_advice_preprocessing.py' adding 'libtbx/langchain/tests/tst_after_program_fill_from_raw.py' adding 'libtbx/langchain/tests/tst_after_program_prompt.py' adding 'libtbx/langchain/tests/tst_agent_build_info.py' adding 'libtbx/langchain/tests/tst_analysis_request.py' adding 'libtbx/langchain/tests/tst_api_schema.py' adding 'libtbx/langchain/tests/tst_audit_fixes.py' adding 'libtbx/langchain/tests/tst_autobuild_hl_recovery.py' adding 'libtbx/langchain/tests/tst_autobuild_sequence_waiver.py' adding 'libtbx/langchain/tests/tst_autosol_bugs.py' adding 'libtbx/langchain/tests/tst_backward_compat.py' adding 'libtbx/langchain/tests/tst_best_files_tracker.py' adding 'libtbx/langchain/tests/tst_build_experiment_type_and_rfree.py' adding 'libtbx/langchain/tests/tst_canary.py' adding 'libtbx/langchain/tests/tst_cc_key_extraction.py' adding 'libtbx/langchain/tests/tst_classify_mtz_type_001.py' adding 'libtbx/langchain/tests/tst_command_builder.py' adding 'libtbx/langchain/tests/tst_contract_compliance.py' adding 'libtbx/langchain/tests/tst_copies_tracking.py' adding 'libtbx/langchain/tests/tst_cryoem_metric_evaluator_validation.py' adding 'libtbx/langchain/tests/tst_cryoem_stop_validation.py' adding 'libtbx/langchain/tests/tst_data_input_filter.py' adding 'libtbx/langchain/tests/tst_decision_flow.py' adding 'libtbx/langchain/tests/tst_default_models.py' adding 'libtbx/langchain/tests/tst_density_modify_experiment_type.py' adding 'libtbx/langchain/tests/tst_dependencies.py' adding 'libtbx/langchain/tests/tst_diagnosed_failure_stop.py' adding 'libtbx/langchain/tests/tst_diagnostic_messages.py' adding 'libtbx/langchain/tests/tst_directive_extractor.py' adding 'libtbx/langchain/tests/tst_directive_extractor_behavior_regression.py' adding 'libtbx/langchain/tests/tst_directive_extractor_grounding.py' adding 'libtbx/langchain/tests/tst_directive_extractor_sentinel_space_group.py' adding 'libtbx/langchain/tests/tst_directive_layer_diagnostics.py' adding 'libtbx/langchain/tests/tst_directive_validation.py' adding 'libtbx/langchain/tests/tst_directive_validator.py' adding 'libtbx/langchain/tests/tst_directive_validator_typo_hints.py' adding 'libtbx/langchain/tests/tst_directives_integration.py' adding 'libtbx/langchain/tests/tst_display_data_model.py' adding 'libtbx/langchain/tests/tst_dock_and_stop.py' adding 'libtbx/langchain/tests/tst_docs_tools.py' adding 'libtbx/langchain/tests/tst_dry_run.py' adding 'libtbx/langchain/tests/tst_error_analyzer.py' adding 'libtbx/langchain/tests/tst_error_classifier.py' adding 'libtbx/langchain/tests/tst_event_formatter_file_categories.py' adding 'libtbx/langchain/tests/tst_event_system.py' adding 'libtbx/langchain/tests/tst_explanation_prompts.py' adding 'libtbx/langchain/tests/tst_extended_stop_phrasings.py' adding 'libtbx/langchain/tests/tst_extract_raw_advice.py' adding 'libtbx/langchain/tests/tst_extraction_failure_visibility.py' adding 'libtbx/langchain/tests/tst_fabricated_stop_condition.py' adding 'libtbx/langchain/tests/tst_file_categorization.py' adding 'libtbx/langchain/tests/tst_file_categorizer.py' adding 'libtbx/langchain/tests/tst_file_encoding.py' adding 'libtbx/langchain/tests/tst_file_utils.py' adding 'libtbx/langchain/tests/tst_fix_verification.py' adding 'libtbx/langchain/tests/tst_force_no_ai_server.py' adding 'libtbx/langchain/tests/tst_gate_evaluator.py' adding 'libtbx/langchain/tests/tst_general_resolver.py' adding 'libtbx/langchain/tests/tst_grounding_stop_after_requested.py' adding 'libtbx/langchain/tests/tst_h17_strip_executor.py' adding 'libtbx/langchain/tests/tst_h18_1_phil_roundtrip.py' adding 'libtbx/langchain/tests/tst_halfmap_sigmaa_inventory.py' adding 'libtbx/langchain/tests/tst_hardcoded_cleanup.py' adding 'libtbx/langchain/tests/tst_history_analysis.py' adding 'libtbx/langchain/tests/tst_hypothesis_evaluator.py' adding 'libtbx/langchain/tests/tst_initialize_plan_smoke.py' adding 'libtbx/langchain/tests/tst_input_mtz_has_rfree_plumbing.py' adding 'libtbx/langchain/tests/tst_integration.py' adding 'libtbx/langchain/tests/tst_intent_classifier.py' adding 'libtbx/langchain/tests/tst_langchain_tools.py' adding 'libtbx/langchain/tests/tst_ligand_workflow_restart.py' adding 'libtbx/langchain/tests/tst_ligandfit_patterns.py' adding 'libtbx/langchain/tests/tst_llm_unavailable_notice.py' adding 'libtbx/langchain/tests/tst_log_extractor.py' adding 'libtbx/langchain/tests/tst_log_structure_extractor.py' adding 'libtbx/langchain/tests/tst_metric_patterns.py' adding 'libtbx/langchain/tests/tst_metrics_analyzer.py' adding 'libtbx/langchain/tests/tst_mode_isolation.py' adding 'libtbx/langchain/tests/tst_mtz_crosscheck.py' adding 'libtbx/langchain/tests/tst_mtz_phases_session_blocking.py' adding 'libtbx/langchain/tests/tst_n_bugs.py' adding 'libtbx/langchain/tests/tst_new_programs.py' adding 'libtbx/langchain/tests/tst_obs_labels_auto_fill.py' adding 'libtbx/langchain/tests/tst_old_client_compat.py' adding 'libtbx/langchain/tests/tst_optional_dep_resilience.py' adding 'libtbx/langchain/tests/tst_pattern_manager.py' adding 'libtbx/langchain/tests/tst_perceive_stop_checks.py' adding 'libtbx/langchain/tests/tst_phase0_static_audit.py' adding 'libtbx/langchain/tests/tst_phase1_contract_gaps.py' adding 'libtbx/langchain/tests/tst_phase2_path_consistency.py' adding 'libtbx/langchain/tests/tst_phase2b_activation.py' adding 'libtbx/langchain/tests/tst_phase3_bug5.py' adding 'libtbx/langchain/tests/tst_phase3_serialization_symmetry.py' adding 'libtbx/langchain/tests/tst_phase3d_motivating_tutorial.py' adding 'libtbx/langchain/tests/tst_phase4_history_flags.py' adding 'libtbx/langchain/tests/tst_phase5_error_classification.py' adding 'libtbx/langchain/tests/tst_phase6_category_consumer.py' adding 'libtbx/langchain/tests/tst_phase7_routing_simulation.py' adding 'libtbx/langchain/tests/tst_phase8_command_building.py' adding 'libtbx/langchain/tests/tst_phase9_llm_perturbation.py' adding 'libtbx/langchain/tests/tst_phaser_multimodel.py' adding 'libtbx/langchain/tests/tst_phil_namespace_cleaner.py' adding 'libtbx/langchain/tests/tst_phil_validation.py' adding 'libtbx/langchain/tests/tst_placement_skip_rebuild.py' adding 'libtbx/langchain/tests/tst_plan_autostop_validation_suppression.py' adding 'libtbx/langchain/tests/tst_plan_catchup_failure_semantics.py' adding 'libtbx/langchain/tests/tst_plan_generator.py' adding 'libtbx/langchain/tests/tst_plan_lead_program_offer.py' adding 'libtbx/langchain/tests/tst_plan_schema.py' adding 'libtbx/langchain/tests/tst_planning_framework.py' adding 'libtbx/langchain/tests/tst_portkey_embedding_model.py' adding 'libtbx/langchain/tests/tst_predict_and_build_no_ncs.py' adding 'libtbx/langchain/tests/tst_preprocessor_file_override.py' adding 'libtbx/langchain/tests/tst_program_identity.py' adding 'libtbx/langchain/tests/tst_program_registration.py' adding 'libtbx/langchain/tests/tst_program_requirements.py' adding 'libtbx/langchain/tests/tst_protocol_version.py' adding 'libtbx/langchain/tests/tst_provider_error_classification.py' adding 'libtbx/langchain/tests/tst_provider_lock.py' adding 'libtbx/langchain/tests/tst_raw_advice_scanner.py' adding 'libtbx/langchain/tests/tst_reactive_deviation_hold.py' adding 'libtbx/langchain/tests/tst_reasoning_command_divergence.py' adding 'libtbx/langchain/tests/tst_rebuild_template_selection.py' adding 'libtbx/langchain/tests/tst_refine_final_rfree.py' adding 'libtbx/langchain/tests/tst_report_verifier.py' adding 'libtbx/langchain/tests/tst_resolve_cryo_em_ncs_inject.py' adding 'libtbx/langchain/tests/tst_resume_reopen_stages.py' adding 'libtbx/langchain/tests/tst_rfree_flags_missing.py' adding 'libtbx/langchain/tests/tst_rfree_generate_guard.py' adding 'libtbx/langchain/tests/tst_rfree_lock_reconciliation.py' adding 'libtbx/langchain/tests/tst_rfree_resolution_stop.py' adding 'libtbx/langchain/tests/tst_safe_float_consolidation.py' adding 'libtbx/langchain/tests/tst_sanity_checker.py' adding 'libtbx/langchain/tests/tst_scenario_tracer.py' adding 'libtbx/langchain/tests/tst_sequence_only_routing.py' adding 'libtbx/langchain/tests/tst_session_directives.py' adding 'libtbx/langchain/tests/tst_session_summary.py' adding 'libtbx/langchain/tests/tst_session_tools.py' adding 'libtbx/langchain/tests/tst_settings_list_coercion.py' adding 'libtbx/langchain/tests/tst_shared_code_imports.py' adding 'libtbx/langchain/tests/tst_silent_stop_abort_messages.py' adding 'libtbx/langchain/tests/tst_simple_extractor_validation.py' adding 'libtbx/langchain/tests/tst_skip_promotion.py' adding 'libtbx/langchain/tests/tst_skip_to_program.py' adding 'libtbx/langchain/tests/tst_solve_action_keywords.py' adding 'libtbx/langchain/tests/tst_space_group_validation.py' adding 'libtbx/langchain/tests/tst_spurious_stop_after_requested.py' adding 'libtbx/langchain/tests/tst_standalone_consistency.py' adding 'libtbx/langchain/tests/tst_state_serialization.py' adding 'libtbx/langchain/tests/tst_step1f_single_emit.py' adding 'libtbx/langchain/tests/tst_stop_condition_false_positive.py' adding 'libtbx/langchain/tests/tst_stop_condition_fix.py' adding 'libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py' adding 'libtbx/langchain/tests/tst_stop_reason_codes.py' adding 'libtbx/langchain/tests/tst_stop_reason_prompt.py' adding 'libtbx/langchain/tests/tst_strategy_memory.py' adding 'libtbx/langchain/tests/tst_structure_model.py' adding 'libtbx/langchain/tests/tst_summary_display.py' adding 'libtbx/langchain/tests/tst_summary_file.py' adding 'libtbx/langchain/tests/tst_supported_providers_single_source.py' adding 'libtbx/langchain/tests/tst_template.py' adding 'libtbx/langchain/tests/tst_thinking_agent.py' adding 'libtbx/langchain/tests/tst_thinking_defense.py' adding 'libtbx/langchain/tests/tst_transport.py' adding 'libtbx/langchain/tests/tst_transport_surfaces.py' adding 'libtbx/langchain/tests/tst_user_advice_filter.py' adding 'libtbx/langchain/tests/tst_utils.py' adding 'libtbx/langchain/tests/tst_v112_13_fixes.py' adding 'libtbx/langchain/tests/tst_v120_providers.py' adding 'libtbx/langchain/tests/tst_validate_file_overrides.py' adding 'libtbx/langchain/tests/tst_validate_step_after_program_guard.py' adding 'libtbx/langchain/tests/tst_validation_history.py' adding 'libtbx/langchain/tests/tst_workflow_complete_stop.py' adding 'libtbx/langchain/tests/tst_workflow_state.py' adding 'libtbx/langchain/tests/tst_yaml_config.py' adding 'libtbx/langchain/tests/tst_yaml_tools.py' adding 'libtbx/langchain/tests/integration/__init__.py' adding 'libtbx/langchain/tests/llm/__init__.py' adding 'libtbx/langchain/tests/llm/canary_check.py' adding 'libtbx/langchain/tests/llm/framework.py' adding 'libtbx/langchain/tests/llm/run_llm_tests.py' adding 'libtbx/langchain/tests/llm/tst_a1_extractor_smoke.py' adding 'libtbx/langchain/tests/llm/tst_b1_stop_after_requested.py' adding 'libtbx/langchain/tests/llm/tst_b2_gated_wipe_planning.py' adding 'libtbx/langchain/tests/llm/tst_c1_raw_authority.py' adding 'libtbx/langchain/tests/llm/tst_directive_extraction.py' adding 'libtbx/langchain/tests/llm/tst_framework_self.py' adding 'libtbx/langchain/tests/llm/tst_planning.py' adding 'libtbx/langchain/utils/__init__.py' adding 'libtbx/langchain/utils/query.py' adding 'libtbx/langchain/utils/run_utils.py' adding 'libtbx/langchain/utils/text_processing.py' adding 'libtbx/phil/__init__.py' adding 'libtbx/phil/command_line.py' adding 'libtbx/phil/experimental.py' adding 'libtbx/phil/gui_objects.py' adding 'libtbx/phil/interface.py' adding 'libtbx/phil/parser.py' adding 'libtbx/phil/tokenizer.py' adding 'libtbx/phil/tst.py' adding 'libtbx/phil/tst_experimental.py' adding 'libtbx/phil/tst_interface.py' adding 'libtbx/phil/tst_tokenizer.py' adding 'libtbx/program_utils/__init__.py' adding 'libtbx/program_utils/result.py' adding 'libtbx/program_utils/statistics_info.py' adding 'libtbx/queuing_system_utils/__init__.py' adding 'libtbx/queuing_system_utils/communication.py' adding 'libtbx/queuing_system_utils/generic.py' adding 'libtbx/queuing_system_utils/looping.py' adding 'libtbx/queuing_system_utils/lsf.py' adding 'libtbx/queuing_system_utils/pbs_utils.py' adding 'libtbx/queuing_system_utils/remote.py' adding 'libtbx/queuing_system_utils/scheduling.py' adding 'libtbx/queuing_system_utils/scheduling_helpers.py' adding 'libtbx/queuing_system_utils/sge_utils.py' adding 'libtbx/queuing_system_utils/tst.py' adding 'libtbx/queuing_system_utils/processing/__init__.py' adding 'libtbx/queuing_system_utils/processing/errors.py' adding 'libtbx/queuing_system_utils/processing/polling.py' adding 'libtbx/queuing_system_utils/processing/status.py' adding 'libtbx/queuing_system_utils/processing/submission.py' adding 'libtbx/queuing_system_utils/processing/transfer.py' adding 'libtbx/queuing_system_utils/processing/util.py' adding 'libtbx/scheduling/__init__.py' adding 'libtbx/scheduling/cluster_handler.py' adding 'libtbx/scheduling/file_queue.py' adding 'libtbx/scheduling/job_scheduler.py' adding 'libtbx/scheduling/mainthread.py' adding 'libtbx/scheduling/mp_handler.py' adding 'libtbx/scheduling/parallel_for.py' adding 'libtbx/scheduling/philgen.py' adding 'libtbx/scheduling/process_pool.py' adding 'libtbx/scheduling/result.py' adding 'libtbx/scheduling/shared_resource.py' adding 'libtbx/scheduling/socket_queue.py' adding 'libtbx/scheduling/stacktrace.py' adding 'libtbx/scheduling/thread_handler.py' adding 'libtbx/server/FileClient.py' adding 'libtbx/server/FileServer.py' adding 'libtbx/server/FileSocket.py' adding 'libtbx/server/SocketServer.py' adding 'libtbx/server/StartServer.py' adding 'libtbx/server/__init__.py' adding 'libtbx/sphinx/__init__.py' adding 'libtbx/sphinx/phil.py' adding 'libtbx/sphinx/pubmed.py' adding 'libtbx/sphinx/python_string.py' adding 'libtbx/test_utils/__init__.py' adding 'libtbx/test_utils/parallel.py' adding 'libtbx/test_utils/t96_roster.py' adding 'mmtbx/__init__.py' adding 'mmtbx/arrays.py' adding 'mmtbx/clashes.py' adding 'mmtbx/domains_from_pae.py' adding 'mmtbx/f_model_info.py' adding 'mmtbx/find_peaks.py' adding 'mmtbx/grow_density.py' adding 'mmtbx/invariant_domain.py' adding 'mmtbx/lattice.py' adding 'mmtbx/libtbx_refresh.py' adding 'mmtbx/map_tools.py' adding 'mmtbx/model_vs_data.py' adding 'mmtbx/msa.py' adding 'mmtbx/pdb_distances.py' adding 'mmtbx/pdb_symmetry.py' adding 'mmtbx/pdbtools.py' adding 'mmtbx/process_predicted_model.py' adding 'mmtbx/proq2.py' adding 'mmtbx/real_space_correlation.py' adding 'mmtbx/resolve_resources.py' adding 'mmtbx/restraints.py' adding 'mmtbx/run_tests.py' adding 'mmtbx/superpose.py' adding 'mmtbx/xmanip.py' adding 'mmtbx/xmanip_tasks.py' adding 'mmtbx/alignment/__init__.py' adding 'mmtbx/atomic_environment_vectors/__init__.py' adding 'mmtbx/atomic_environment_vectors/tst.py' adding 'mmtbx/building/__init__.py' adding 'mmtbx/building/cablam_idealization.py' adding 'mmtbx/building/extend_sidechains.py' adding 'mmtbx/building/loop_idealization.py' adding 'mmtbx/building/merge_models.py' adding 'mmtbx/building/minimize_chain.py' adding 'mmtbx/building/tst_extend_sidechains.py' adding 'mmtbx/building/tst_extend_sidechains_2.py' adding 'mmtbx/building/ligands/__init__.py' adding 'mmtbx/building/ligands/lifi.py' adding 'mmtbx/building/ligands/tst_00.py' adding 'mmtbx/building/loop_closure/__init__.py' adding 'mmtbx/building/loop_closure/berkeley_ramalyze.py' adding 'mmtbx/building/loop_closure/ccd.py' adding 'mmtbx/building/loop_closure/starting_conformations.py' adding 'mmtbx/building/loop_closure/utils.py' adding 'mmtbx/bulk_solvent/__init__.py' adding 'mmtbx/bulk_solvent/bulk_solvent_and_scaling.py' adding 'mmtbx/bulk_solvent/example.py' adding 'mmtbx/bulk_solvent/example2.py' adding 'mmtbx/bulk_solvent/f_model_all_scales.py' adding 'mmtbx/bulk_solvent/kbu_refinery.py' adding 'mmtbx/bulk_solvent/mosaic.py' adding 'mmtbx/bulk_solvent/multi_mask_bulk_solvent.py' adding 'mmtbx/bulk_solvent/scaler.py' adding 'mmtbx/bulk_solvent/tst_aniso_scaler.py' adding 'mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py' adding 'mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py' adding 'mmtbx/bulk_solvent/tst_flat_nonuniform.py' adding 'mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py' adding 'mmtbx/bulk_solvent/tst_mosaic.py' adding 'mmtbx/bulk_solvent/tst_scaler.py' adding 'mmtbx/chemical_components/__init__.py' adding 'mmtbx/chemical_components/cif_parser.py' adding 'mmtbx/chemical_components/tst.py' adding 'mmtbx/command_line/__init__.py' adding 'mmtbx/command_line/altloc_remediate.py' adding 'mmtbx/command_line/angle.py' adding 'mmtbx/command_line/apply_ncs_to_ligand.py' adding 'mmtbx/command_line/arginine_geometry.py' adding 'mmtbx/command_line/atom_valence_simple.py' adding 'mmtbx/command_line/barbed_wire_analysis.py' adding 'mmtbx/command_line/cablam.py' adding 'mmtbx/command_line/cablam_idealization.py' adding 'mmtbx/command_line/cbetadev.py' adding 'mmtbx/command_line/cc_star.py' adding 'mmtbx/command_line/chiral_validation.py' adding 'mmtbx/command_line/cif_as_mtz.py' adding 'mmtbx/command_line/clashscore.py' adding 'mmtbx/command_line/clashscore2.py' adding 'mmtbx/command_line/comparama.py' adding 'mmtbx/command_line/debug_riding.py' adding 'mmtbx/command_line/density_modification.py' adding 'mmtbx/command_line/development_aev.py' adding 'mmtbx/command_line/development_fem.py' adding 'mmtbx/command_line/distance_difference.py' adding 'mmtbx/command_line/dynamics.py' adding 'mmtbx/command_line/electrons.py' adding 'mmtbx/command_line/emringer.py' adding 'mmtbx/command_line/emringer_score.py' adding 'mmtbx/command_line/estimate_bijvoet_ratio.py' adding 'mmtbx/command_line/f000.py' adding 'mmtbx/command_line/fab_elbow_angle.py' adding 'mmtbx/command_line/fake_f_obs.py' adding 'mmtbx/command_line/fetch_pdb.py' adding 'mmtbx/command_line/find_peaks_holes.py' adding 'mmtbx/command_line/find_residue_in_pdb.py' adding 'mmtbx/command_line/find_tls_groups.py' adding 'mmtbx/command_line/fmodel.py' adding 'mmtbx/command_line/fobs_minus_fobs_map.py' adding 'mmtbx/command_line/geometry_minimization.py' adding 'mmtbx/command_line/grow_density.py' adding 'mmtbx/command_line/hbond.py' adding 'mmtbx/command_line/helix_sheet_recs_as_pdb_files.py' adding 'mmtbx/command_line/holton_geometry_validation.py' adding 'mmtbx/command_line/hydrogenate.py' adding 'mmtbx/command_line/kinemage.py' adding 'mmtbx/command_line/ligand_restraints_validation.py' adding 'mmtbx/command_line/map_box.py' adding 'mmtbx/command_line/map_comparison.py' adding 'mmtbx/command_line/map_to_model_histogram.py' adding 'mmtbx/command_line/map_to_structure_factors.py' adding 'mmtbx/command_line/maps.py' adding 'mmtbx/command_line/mask.py' adding 'mmtbx/command_line/massage_data.py' adding 'mmtbx/command_line/matthews.py' adding 'mmtbx/command_line/maximum_entropy_map.py' adding 'mmtbx/command_line/model_idealization.py' adding 'mmtbx/command_line/model_map.py' adding 'mmtbx/command_line/model_model_distances.py' adding 'mmtbx/command_line/model_vs_data.py' adding 'mmtbx/command_line/model_vs_map.py' adding 'mmtbx/command_line/model_vs_sequence.py' adding 'mmtbx/command_line/models_as_chains.py' adding 'mmtbx/command_line/molprobity.py' adding 'mmtbx/command_line/mon_lib_cif_triage.py' adding 'mmtbx/command_line/mp_geo.py' adding 'mmtbx/command_line/mp_validate_bonds.py' adding 'mmtbx/command_line/mtz2map.py' adding 'mmtbx/command_line/next_gen_atom_typing.py' adding 'mmtbx/command_line/next_gen_residue_typing.py' adding 'mmtbx/command_line/nonbonded_overlaps.py' adding 'mmtbx/command_line/omegalyze.py' adding 'mmtbx/command_line/pdb_atom_selection.py' adding 'mmtbx/command_line/pdb_interpretation.py' adding 'mmtbx/command_line/pdbtools.py' adding 'mmtbx/command_line/perigee.py' adding 'mmtbx/command_line/plan_sad_experiment.py' adding 'mmtbx/command_line/polder.py' adding 'mmtbx/command_line/prepare_pdb_deposition.py' adding 'mmtbx/command_line/probe2.py' adding 'mmtbx/command_line/probescore_ligand.py' adding 'mmtbx/command_line/process_predicted_model.py' adding 'mmtbx/command_line/prune_model.py' adding 'mmtbx/command_line/quantum_interface.py' adding 'mmtbx/command_line/r_factor_statistics.py' adding 'mmtbx/command_line/rama_z.py' adding 'mmtbx/command_line/ramalyze.py' adding 'mmtbx/command_line/rank_scale_map.py' adding 'mmtbx/command_line/real_space_correlation.py' adding 'mmtbx/command_line/real_space_diff_map.py' adding 'mmtbx/command_line/rebuild_cablam_cache.py' adding 'mmtbx/command_line/rebuild_rotarama_cache.py' adding 'mmtbx/command_line/reciprocal_space_arrays.py' adding 'mmtbx/command_line/reduce2.py' adding 'mmtbx/command_line/reduce_cryoem_resolution.py' adding 'mmtbx/command_line/refine_anomalous_substructure.py' adding 'mmtbx/command_line/remove_outliers.py' adding 'mmtbx/command_line/ribbons.py' adding 'mmtbx/command_line/rigid_bond_test.py' adding 'mmtbx/command_line/ringer.py' adding 'mmtbx/command_line/rna_validate.py' adding 'mmtbx/command_line/rna_validate_bonds.py' adding 'mmtbx/command_line/rna_validate_puckers.py' adding 'mmtbx/command_line/rna_validate_suites.py' adding 'mmtbx/command_line/rotalyze.py' adding 'mmtbx/command_line/search_pdb_symmetry.py' adding 'mmtbx/command_line/secondary_structure_restraints.py' adding 'mmtbx/command_line/secondary_structure_validation.py' adding 'mmtbx/command_line/select_best_starting_model.py' adding 'mmtbx/command_line/show_r_factors_by_shell.py' adding 'mmtbx/command_line/sisa.py' adding 'mmtbx/command_line/sort_hetatms.py' adding 'mmtbx/command_line/ss_idealization.py' adding 'mmtbx/command_line/suitename.py' adding 'mmtbx/command_line/suitename_old.py' adding 'mmtbx/command_line/super.py' adding 'mmtbx/command_line/superpose.py' adding 'mmtbx/command_line/taam_minus_iam.py' adding 'mmtbx/command_line/table_one.py' adding 'mmtbx/command_line/tls.py' adding 'mmtbx/command_line/tls_analysis.py' adding 'mmtbx/command_line/tls_as_xyz.py' adding 'mmtbx/command_line/undowser.py' adding 'mmtbx/command_line/undowser2.py' adding 'mmtbx/command_line/validate_H_cl_app.py' adding 'mmtbx/command_line/validate_ligands.py' adding 'mmtbx/command_line/validation_summary.py' adding 'mmtbx/command_line/verify_mon_lib_data.py' adding 'mmtbx/command_line/water_b_factors.py' adding 'mmtbx/command_line/where_is_that_cif_file.py' adding 'mmtbx/command_line/xmanip.py' adding 'mmtbx/command_line/xtrapol8.py' adding 'mmtbx/command_line/xtriage.py' adding 'mmtbx/conformation_dependent_library/LinkedResidues.py' adding 'mmtbx/conformation_dependent_library/__init__.py' adding 'mmtbx/conformation_dependent_library/altloc_weighting.py' adding 'mmtbx/conformation_dependent_library/bond_angle_registry.py' adding 'mmtbx/conformation_dependent_library/cdl_database.py' adding 'mmtbx/conformation_dependent_library/cdl_setup.py' adding 'mmtbx/conformation_dependent_library/cdl_svl_database.py' adding 'mmtbx/conformation_dependent_library/cdl_utils.py' adding 'mmtbx/conformation_dependent_library/check_cdl_database.py' adding 'mmtbx/conformation_dependent_library/density_dependent_restraints.py' adding 'mmtbx/conformation_dependent_library/enol_peptide_restraints.py' adding 'mmtbx/conformation_dependent_library/histidines.py' adding 'mmtbx/conformation_dependent_library/hpdl_database.py' adding 'mmtbx/conformation_dependent_library/hydrogen_bonding.py' adding 'mmtbx/conformation_dependent_library/investigate_rotamer_space.py' adding 'mmtbx/conformation_dependent_library/mcl.py' adding 'mmtbx/conformation_dependent_library/mcl_sf4_coordination.py' adding 'mmtbx/conformation_dependent_library/metal_coordination_library.py' adding 'mmtbx/conformation_dependent_library/multi_base_class.py' adding 'mmtbx/conformation_dependent_library/multi_residue_cdl_class.py' adding 'mmtbx/conformation_dependent_library/multi_residue_class.py' adding 'mmtbx/conformation_dependent_library/nucleotides.py' adding 'mmtbx/conformation_dependent_library/omega.py' adding 'mmtbx/conformation_dependent_library/omega_database.py' adding 'mmtbx/conformation_dependent_library/pH_dependent_restraints.py' adding 'mmtbx/conformation_dependent_library/rdl_database.py' adding 'mmtbx/conformation_dependent_library/rotamers.py' adding 'mmtbx/conformation_dependent_library/sf4_restraints.py' adding 'mmtbx/conformation_dependent_library/testing_utils.py' adding 'mmtbx/conformation_dependent_library/tst_cdl.py' adding 'mmtbx/conformation_dependent_library/tst_cdl_esd.py' adding 'mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py' adding 'mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py' adding 'mmtbx/conformation_dependent_library/tst_enol_peptide.py' adding 'mmtbx/conformation_dependent_library/tst_hpdl.py' adding 'mmtbx/conformation_dependent_library/tst_mcl_01.py' adding 'mmtbx/conformation_dependent_library/tst_mcl_02.py' adding 'mmtbx/conformation_dependent_library/tst_mcl_03.py' adding 'mmtbx/conformation_dependent_library/tst_multi_residue_rna.py' adding 'mmtbx/conformation_dependent_library/tst_mutli_residue.py' adding 'mmtbx/conformation_dependent_library/tst_omega_cdl.py' adding 'mmtbx/conformation_dependent_library/tst_pH_mechanism.py' adding 'mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py' adding 'mmtbx/conformation_dependent_library/tst_rdl.py' adding 'mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py' adding 'mmtbx/conformation_dependent_library/utils.py' adding 'mmtbx/den/__init__.py' adding 'mmtbx/den/plot_weights.py' adding 'mmtbx/den/refinement.py' adding 'mmtbx/density_modification/__init__.py' adding 'mmtbx/density_modification/tst_density_modification.py' adding 'mmtbx/disorder/__init__.py' adding 'mmtbx/disorder/analyze_model.py' adding 'mmtbx/disorder/backbone.py' adding 'mmtbx/disorder/tst.py' adding 'mmtbx/disorder/tst_analyze_model.py' adding 'mmtbx/disorder/tst_backbone.py' adding 'mmtbx/dynamics/__init__.py' adding 'mmtbx/dynamics/cartesian_dynamics.py' adding 'mmtbx/dynamics/constants.py' adding 'mmtbx/dynamics/ensemble_cd.py' adding 'mmtbx/dynamics/simulated_annealing.py' adding 'mmtbx/dynamics/tst_cartesian_dynamics.py' adding 'mmtbx/dynamics/tst_sa.py' adding 'mmtbx/f_model/__init__.py' adding 'mmtbx/f_model/f_model.py' adding 'mmtbx/f_model/f_model_info.py' adding 'mmtbx/geometry/__init__.py' adding 'mmtbx/geometry/altloc.py' adding 'mmtbx/geometry/asa.py' adding 'mmtbx/geometry/clash.py' adding 'mmtbx/geometry/indexing.py' adding 'mmtbx/geometry/shared_types.py' adding 'mmtbx/geometry/sphere_surface_sampling.py' adding 'mmtbx/geometry/topology.py' adding 'mmtbx/geometry_restraints/__init__.py' adding 'mmtbx/geometry_restraints/afitt.py' adding 'mmtbx/geometry_restraints/base_qm_manager.py' adding 'mmtbx/geometry_restraints/c_beta.py' adding 'mmtbx/geometry_restraints/external.py' adding 'mmtbx/geometry_restraints/geo_file_parsing.py' adding 'mmtbx/geometry_restraints/mopac_manager.py' adding 'mmtbx/geometry_restraints/orca_manager.py' adding 'mmtbx/geometry_restraints/qi_utils.py' adding 'mmtbx/geometry_restraints/qm_manager.py' adding 'mmtbx/geometry_restraints/quantum_interface.py' adding 'mmtbx/geometry_restraints/quantum_restraints_manager.py' adding 'mmtbx/geometry_restraints/ramachandran.py' adding 'mmtbx/geometry_restraints/reference.py' adding 'mmtbx/geometry_restraints/tst_c_beta_restraints.py' adding 'mmtbx/geometry_restraints/tst_geo_file_parsing.py' adding 'mmtbx/geometry_restraints/tst_manager.py' adding 'mmtbx/geometry_restraints/tst_orca_manager.py' adding 'mmtbx/geometry_restraints/tst_ramachandran.py' adding 'mmtbx/geometry_restraints/tst_reference_coordinate.py' adding 'mmtbx/geometry_restraints/tst_reference_coordinate2.py' adding 'mmtbx/geometry_restraints/tst_replace_in_place.py' adding 'mmtbx/geometry_restraints/tst_xtb_manager.py' adding 'mmtbx/geometry_restraints/xtb_manager.py' adding 'mmtbx/geometry_restraints/torsion_restraints/__init__.py' adding 'mmtbx/geometry_restraints/torsion_restraints/reference_model.py' adding 'mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py' adding 'mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_reference_hbond.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_reference_ramachandran.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_ter_records.py' adding 'mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py' adding 'mmtbx/geometry_restraints/torsion_restraints/utils.py' adding 'mmtbx/hydrogens/__init__.py' adding 'mmtbx/hydrogens/build_hydrogens.py' adding 'mmtbx/hydrogens/connectivity.py' adding 'mmtbx/hydrogens/neutron_utils.py' adding 'mmtbx/hydrogens/parameterization.py' adding 'mmtbx/hydrogens/reduce_hydrogen.py' adding 'mmtbx/hydrogens/riding.py' adding 'mmtbx/hydrogens/specialised_hydrogen_atoms.py' adding 'mmtbx/hydrogens/tst.py' adding 'mmtbx/hydrogens/tst_add_hydrogen.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_1.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_10.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_11.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_12.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_13.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_14.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_15.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_16.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_2.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_3.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_4.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_5.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_6.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_7.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_8.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_9.py' adding 'mmtbx/hydrogens/tst_add_hydrogen_time.py' adding 'mmtbx/hydrogens/tst_connectivity.py' adding 'mmtbx/hydrogens/tst_const_dihedral.py' adding 'mmtbx/hydrogens/tst_parameterization_1.py' adding 'mmtbx/hydrogens/tst_parameterization_2.py' adding 'mmtbx/hydrogens/tst_parameterization_3.py' adding 'mmtbx/hydrogens/tst_parameterization_4.py' adding 'mmtbx/hydrogens/tst_parameterization_5.py' adding 'mmtbx/hydrogens/tst_parameterization_6.py' adding 'mmtbx/hydrogens/tst_parameterization_7.py' adding 'mmtbx/hydrogens/tst_parameterization_8.py' adding 'mmtbx/hydrogens/tst_parameterization_9.py' adding 'mmtbx/hydrogens/tst_riding_coefficients.py' adding 'mmtbx/hydrogens/tst_riding_fd_1.py' adding 'mmtbx/hydrogens/tst_riding_fd_2.py' adding 'mmtbx/hydrogens/tst_riding_fd_3.py' adding 'mmtbx/hydrogens/tst_riding_fd_4.py' adding 'mmtbx/hydrogens/tst_riding_fd_5.py' adding 'mmtbx/hydrogens/tst_riding_manager.py' adding 'mmtbx/hydrogens/tst_riding_minimize.py' adding 'mmtbx/hydrogens/tst_validate_H.py' adding 'mmtbx/hydrogens/validate_H.py' adding 'mmtbx/ias/__init__.py' adding 'mmtbx/ias/tst_ias.py' adding 'mmtbx/idealized_aa_residues/__init__.py' adding 'mmtbx/idealized_aa_residues/all_his.py' adding 'mmtbx/idealized_aa_residues/rotamer_manager.py' adding 'mmtbx/idealized_aa_residues/sample_rotamers.py' adding 'mmtbx/idealized_aa_residues/tst.py' adding 'mmtbx/ions/__init__.py' adding 'mmtbx/ions/build.py' adding 'mmtbx/ions/environment.py' adding 'mmtbx/ions/geometry.py' adding 'mmtbx/ions/halides.py' adding 'mmtbx/ions/identify.py' adding 'mmtbx/ions/tst_environment.py' adding 'mmtbx/ions/tst_geometries.py' adding 'mmtbx/ions/tst_parameters.py' adding 'mmtbx/ions/tst_pick_approx_zn.py' adding 'mmtbx/ions/tst_pick_ca.py' adding 'mmtbx/ions/tst_pick_ca_svm.py' adding 'mmtbx/ions/tst_pick_k.py' adding 'mmtbx/ions/tst_pick_mg.py' adding 'mmtbx/ions/tst_pickle.py' adding 'mmtbx/ions/tst_symmetry_axis.py' adding 'mmtbx/ions/tst_utils.py' adding 'mmtbx/ions/tst_validate_ca.py' adding 'mmtbx/ions/tst_validate_mg.py' adding 'mmtbx/ions/utils.py' adding 'mmtbx/ions/svm/__init__.py' adding 'mmtbx/ions/svm/dump_sites.py' adding 'mmtbx/ions/svm/tst_classifier_01.py' adding 'mmtbx/ions/svm/tst_classifier_02.py' adding 'mmtbx/ions/svm/utils.py' adding 'mmtbx/kinemage/__init__.py' adding 'mmtbx/kinemage/nrubs.py' adding 'mmtbx/kinemage/ribbon_rendering.py' adding 'mmtbx/kinemage/ribbons.py' adding 'mmtbx/kinemage/tst_validation.py' adding 'mmtbx/kinemage/validation.py' adding 'mmtbx/ligands/__init__.py' adding 'mmtbx/ligands/chemistry.py' adding 'mmtbx/ligands/electrons.py' adding 'mmtbx/ligands/hierarchy_utils.py' adding 'mmtbx/ligands/rdkit_utils.py' adding 'mmtbx/ligands/ready_set_basics.py' adding 'mmtbx/ligands/ready_set_utils.py' adding 'mmtbx/ligands/tst_electron_scripting.py' adding 'mmtbx/ligands/tst_ready_set_utils.py' adding 'mmtbx/ligands/tst_xtal_screens.py' adding 'mmtbx/ligands/xtal_screens.py' adding 'mmtbx/maps/__init__.py' adding 'mmtbx/maps/composite_omit_map.py' adding 'mmtbx/maps/correlation.py' adding 'mmtbx/maps/fem.py' adding 'mmtbx/maps/fobs_minus_fobs_map.py' adding 'mmtbx/maps/kick.py' adding 'mmtbx/maps/map_model_cc.py' adding 'mmtbx/maps/mtriage.py' adding 'mmtbx/maps/polder.py' adding 'mmtbx/maps/superpose.py' adding 'mmtbx/maps/tst_composite_omit_map.py' adding 'mmtbx/maps/tst_composite_omit_map_2.py' adding 'mmtbx/maps/tst_composite_omit_map_3.py' adding 'mmtbx/maps/tst_correlation.py' adding 'mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py' adding 'mmtbx/maps/utils.py' adding 'mmtbx/maps/xtrapol8.py' adding 'mmtbx/masks/__init__.py' adding 'mmtbx/masks/tst_asu_mask.py' adding 'mmtbx/masks/tst_masks.py' adding 'mmtbx/max_lik/__init__.py' adding 'mmtbx/max_lik/max_like_non_uniform.py' adding 'mmtbx/max_lik/maxlik.py' adding 'mmtbx/max_lik/tst_max_lik.py' adding 'mmtbx/max_lik/tst_maxlik.py' adding 'mmtbx/model/__init__.py' adding 'mmtbx/model/model.py' adding 'mmtbx/model/restraints.py' adding 'mmtbx/model/statistics.py' adding 'mmtbx/model/utils.py' adding 'mmtbx/monomer_library/__init__.py' adding 'mmtbx/monomer_library/bondlength_defaults.py' adding 'mmtbx/monomer_library/cif_triage.py' adding 'mmtbx/monomer_library/cif_types.py' adding 'mmtbx/monomer_library/conformation_dependent_restraints.py' adding 'mmtbx/monomer_library/conv_v2_v3.py' adding 'mmtbx/monomer_library/correct_hydrogen_geometries.py' adding 'mmtbx/monomer_library/geostd_utils.py' adding 'mmtbx/monomer_library/glyco_chiral_values.py' adding 'mmtbx/monomer_library/glyco_utils.py' adding 'mmtbx/monomer_library/hydrogen_restrictions.py' adding 'mmtbx/monomer_library/idealized_aa.py' adding 'mmtbx/monomer_library/linking_mixins.py' adding 'mmtbx/monomer_library/linking_setup.py' adding 'mmtbx/monomer_library/linking_utils.py' adding 'mmtbx/monomer_library/mmtbx_utils.py' adding 'mmtbx/monomer_library/pdb_interpretation.py' adding 'mmtbx/monomer_library/populate_auto_linking_origin_ids.py' adding 'mmtbx/monomer_library/rna_sugar_pucker_analysis.py' adding 'mmtbx/monomer_library/rotamer_utils.py' adding 'mmtbx/monomer_library/server.py' adding 'mmtbx/monomer_library/tst_all_cif_files.py' adding 'mmtbx/monomer_library/tst_carbo_linking.py' adding 'mmtbx/monomer_library/tst_chg.py' adding 'mmtbx/monomer_library/tst_cif_triage.py' adding 'mmtbx/monomer_library/tst_cif_types.py' adding 'mmtbx/monomer_library/tst_correct_hydrogens.py' adding 'mmtbx/monomer_library/tst_deuterium_terminii.py' adding 'mmtbx/monomer_library/tst_geo_reduce_for_tardy.py' adding 'mmtbx/monomer_library/tst_glyco_coordination.py' adding 'mmtbx/monomer_library/tst_glyco_hand.py' adding 'mmtbx/monomer_library/tst_idealized_aa.py' adding 'mmtbx/monomer_library/tst_iron_sulfur_clusters.py' adding 'mmtbx/monomer_library/tst_linking.py' adding 'mmtbx/monomer_library/tst_metal_coordination.py' adding 'mmtbx/monomer_library/tst_motif.py' adding 'mmtbx/monomer_library/tst_neutron_distance.py' adding 'mmtbx/monomer_library/tst_paral_geo.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_2.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_3.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_4.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_5.py' adding 'mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py' adding 'mmtbx/monomer_library/tst_protein_interpretation.py' adding 'mmtbx/monomer_library/tst_rna_dna_interpretation.py' adding 'mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py' adding 'mmtbx/monomer_library/tst_rotamer_utils.py' adding 'mmtbx/monomer_library/tst_selection.py' adding 'mmtbx/monomer_library/tst_server.py' adding 'mmtbx/monomer_library/tst_superpose_ideal.py' adding 'mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py' adding 'mmtbx/monomer_library/tst_user_supplied_library.py' adding 'mmtbx/nci/__init__.py' adding 'mmtbx/nci/data_filtering.py' adding 'mmtbx/nci/hbond.py' adding 'mmtbx/nci/skew_kurt_plot.py' adding 'mmtbx/nci/tst_hbond.py' adding 'mmtbx/ncs/__init__.py' adding 'mmtbx/ncs/cartesian_restraints.py' adding 'mmtbx/ncs/ligands.py' adding 'mmtbx/ncs/ncs.py' adding 'mmtbx/ncs/ncs_params.py' adding 'mmtbx/ncs/ncs_restraints_group_list.py' adding 'mmtbx/ncs/ncs_search.py' adding 'mmtbx/ncs/ncs_utils.py' adding 'mmtbx/ncs/tncs.py' adding 'mmtbx/pair_interaction/__init__.py' adding 'mmtbx/pair_interaction/pair_interaction.py' adding 'mmtbx/pair_interaction/tst_00.py' adding 'mmtbx/pair_interaction/tst_01.py' adding 'mmtbx/pair_interaction/tst_02.py' adding 'mmtbx/pair_interaction/tst_03.py' adding 'mmtbx/pair_interaction/tst_04.py' adding 'mmtbx/pair_interaction/tst_05.py' adding 'mmtbx/polygon/__init__.py' adding 'mmtbx/polygon/output.py' adding 'mmtbx/polygon/tst.py' adding 'mmtbx/polygon/tst_gui.py' adding 'mmtbx/polygon/tst_polygon_data.py' adding 'mmtbx/probe/AtomTypes.py' adding 'mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py' adding 'mmtbx/probe/Helpers.py' adding 'mmtbx/probe/__init__.py' adding 'mmtbx/probe/tst_mmtbx_probe_ext.py' adding 'mmtbx/programs/__init__.py' adding 'mmtbx/programs/arginine_geometry.py' adding 'mmtbx/programs/atom_selection.py' adding 'mmtbx/programs/atom_valence_simple.py' adding 'mmtbx/programs/barbed_wire_analysis.py' adding 'mmtbx/programs/cablam.py' adding 'mmtbx/programs/cablam_idealization.py' adding 'mmtbx/programs/cbetadev.py' adding 'mmtbx/programs/chiral_validation.py' adding 'mmtbx/programs/clashscore.py' adding 'mmtbx/programs/clashscore2.py' adding 'mmtbx/programs/comparama.py' adding 'mmtbx/programs/debug_riding.py' adding 'mmtbx/programs/elbow_services.py' adding 'mmtbx/programs/emringer.py' adding 'mmtbx/programs/fetch.py' adding 'mmtbx/programs/fmodel.py' adding 'mmtbx/programs/hbond.py' adding 'mmtbx/programs/holton_geometry_validation.py' adding 'mmtbx/programs/hydrogenate.py' adding 'mmtbx/programs/ligand_restraints_validation.py' adding 'mmtbx/programs/mask.py' adding 'mmtbx/programs/matthews.py' adding 'mmtbx/programs/model_vs_sequence.py' adding 'mmtbx/programs/mp_validate_bonds.py' adding 'mmtbx/programs/next_gen_atom_typing.py' adding 'mmtbx/programs/next_gen_residue_typing.py' adding 'mmtbx/programs/nonbonded_overlaps.py' adding 'mmtbx/programs/omegalyze.py' adding 'mmtbx/programs/pdb_as_cif.py' adding 'mmtbx/programs/pdbtools.py' adding 'mmtbx/programs/polder.py' adding 'mmtbx/programs/prepare_pdb_deposition.py' adding 'mmtbx/programs/probe2.py' adding 'mmtbx/programs/probescore_ligand.py' adding 'mmtbx/programs/process_predicted_model.py' adding 'mmtbx/programs/quantum_interface.py' adding 'mmtbx/programs/rama_z.py' adding 'mmtbx/programs/ramalyze.py' adding 'mmtbx/programs/real_space_correlation.py' adding 'mmtbx/programs/reduce2.py' adding 'mmtbx/programs/reduce_cryoem_resolution.py' adding 'mmtbx/programs/ribbons.py' adding 'mmtbx/programs/rna_validate.py' adding 'mmtbx/programs/rna_validate_bonds.py' adding 'mmtbx/programs/rna_validate_puckers.py' adding 'mmtbx/programs/rna_validate_suites.py' adding 'mmtbx/programs/rotalyze.py' adding 'mmtbx/programs/ss_idealization.py' adding 'mmtbx/programs/ss_validation.py' adding 'mmtbx/programs/suitename.py' adding 'mmtbx/programs/suitename_old.py' adding 'mmtbx/programs/taam_minus_iam.py' adding 'mmtbx/programs/undowser.py' adding 'mmtbx/programs/undowser2.py' adding 'mmtbx/programs/validate_ligands.py' adding 'mmtbx/programs/water_b_factors.py' adding 'mmtbx/programs/xtrapol8.py' adding 'mmtbx/real_space/__init__.py' adding 'mmtbx/real_space/tst.py' adding 'mmtbx/reduce/InteractionGraph.py' adding 'mmtbx/reduce/Movers.py' adding 'mmtbx/reduce/Optimizers.py' adding 'mmtbx/reduce/__init__.py' adding 'mmtbx/reduce/tst_mmtbx_reduce_ext.py' adding 'mmtbx/refinement/__init__.py' adding 'mmtbx/refinement/adp_refinement.py' adding 'mmtbx/refinement/anomalous_scatterer_groups.py' adding 'mmtbx/refinement/calculators.py' adding 'mmtbx/refinement/data.py' adding 'mmtbx/refinement/energy_monitor.py' adding 'mmtbx/refinement/flip_peptide_side_chain.py' adding 'mmtbx/refinement/geometry_minimization.py' adding 'mmtbx/refinement/group.py' adding 'mmtbx/refinement/inspect_tardy_trajectory.py' adding 'mmtbx/refinement/minimization.py' adding 'mmtbx/refinement/minimization_monitor.py' adding 'mmtbx/refinement/minimization_ncs_constraints.py' adding 'mmtbx/refinement/occupancies.py' adding 'mmtbx/refinement/orca.py' adding 'mmtbx/refinement/print_statistics.py' adding 'mmtbx/refinement/refinement_flags.py' adding 'mmtbx/refinement/restraints.py' adding 'mmtbx/refinement/rigid_body.py' adding 'mmtbx/refinement/select_best_starting_model.py' adding 'mmtbx/refinement/tardy.py' adding 'mmtbx/refinement/targets.py' adding 'mmtbx/refinement/tst_anomalous_scatterer_groups.py' adding 'mmtbx/refinement/tst_fit_rotamers.py' adding 'mmtbx/refinement/tst_group.py' adding 'mmtbx/refinement/tst_group_2.py' adding 'mmtbx/refinement/tst_misc.py' adding 'mmtbx/refinement/tst_occupancy_selections.py' adding 'mmtbx/refinement/tst_real_space_simple.py' adding 'mmtbx/refinement/tst_refinement_flags.py' adding 'mmtbx/refinement/tst_rigid_body.py' adding 'mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py' adding 'mmtbx/refinement/tst_select_best_starting_model.py' adding 'mmtbx/refinement/utils.py' adding 'mmtbx/refinement/weights.py' adding 'mmtbx/refinement/weights_params.py' adding 'mmtbx/refinement/wrappers.py' adding 'mmtbx/refinement/ensemble_refinement/__init__.py' adding 'mmtbx/refinement/ensemble_refinement/ensemble_probability.py' adding 'mmtbx/refinement/ensemble_refinement/ensemble_utils.py' adding 'mmtbx/refinement/real_space/__init__.py' adding 'mmtbx/refinement/real_space/adp.py' adding 'mmtbx/refinement/real_space/explode_and_refine.py' adding 'mmtbx/refinement/real_space/fit_his.py' adding 'mmtbx/refinement/real_space/fit_residue.py' adding 'mmtbx/refinement/real_space/fit_residues.py' adding 'mmtbx/refinement/real_space/fit_small_molecule.py' adding 'mmtbx/refinement/real_space/fit_water.py' adding 'mmtbx/refinement/real_space/individual_sites.py' adding 'mmtbx/refinement/real_space/occupancy.py' adding 'mmtbx/refinement/real_space/rigid_body.py' adding 'mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_0.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_0H.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_1.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_1H.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_2.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_3.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_4.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_5.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_6.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_7.py' adding 'mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_1.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_1H.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_2.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_3.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_4.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_5.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_6.py' adding 'mmtbx/refinement/real_space/tst_fit_residues_selection.py' adding 'mmtbx/refinement/real_space/tst_fit_water.py' adding 'mmtbx/refinement/real_space/tst_individual_sites_1.py' adding 'mmtbx/refinement/real_space/tst_individual_sites_2.py' adding 'mmtbx/refinement/real_space/tst_individual_sites_3.py' adding 'mmtbx/refinement/real_space/tst_monitor.py' adding 'mmtbx/refinement/real_space/tst_rigid_body.py' adding 'mmtbx/refinement/real_space/tst_weight.py' adding 'mmtbx/refinement/real_space/utils.py' adding 'mmtbx/refinement/real_space/weight.py' adding 'mmtbx/regression/__init__.py' adding 'mmtbx/regression/make_fake_anomalous_data.py' adding 'mmtbx/regression/tst_add_arrows_on_plot.py' adding 'mmtbx/regression/tst_add_h_to_water.py' adding 'mmtbx/regression/tst_adp_restraints.py' adding 'mmtbx/regression/tst_alignment.py' adding 'mmtbx/regression/tst_altloc_chain_break.py' adding 'mmtbx/regression/tst_altloc_remediate.py' adding 'mmtbx/regression/tst_angle.py' adding 'mmtbx/regression/tst_anomalous_substructure.py' adding 'mmtbx/regression/tst_apply_cif_restraints.py' adding 'mmtbx/regression/tst_arginine_geometry.py' adding 'mmtbx/regression/tst_cc_star.py' adding 'mmtbx/regression/tst_chain_comparison.py' adding 'mmtbx/regression/tst_chain_comparison_cif.py' adding 'mmtbx/regression/tst_cif_as_mtz_wavelengths.py' adding 'mmtbx/regression/tst_cis_trans_peptide_link.py' adding 'mmtbx/regression/tst_clashes.py' adding 'mmtbx/regression/tst_command_line_input.py' adding 'mmtbx/regression/tst_domains_from_pae.py' adding 'mmtbx/regression/tst_domains_from_pae_cif.py' adding 'mmtbx/regression/tst_dynamics_cli.py' adding 'mmtbx/regression/tst_examples.py' adding 'mmtbx/regression/tst_find_ncs.py' adding 'mmtbx/regression/tst_find_ss_structure.py' adding 'mmtbx/regression/tst_find_ss_structure_cif.py' adding 'mmtbx/regression/tst_flipping_his.py' adding 'mmtbx/regression/tst_fmodel.py' adding 'mmtbx/regression/tst_fmodel_2.py' adding 'mmtbx/regression/tst_fmodel_and_dm.py' adding 'mmtbx/regression/tst_fmodel_fd.py' adding 'mmtbx/regression/tst_fmodel_misc.py' adding 'mmtbx/regression/tst_fmodel_no_cryst1.py' adding 'mmtbx/regression/tst_geo_min_restraints_phil.py' adding 'mmtbx/regression/tst_geometry_minimization.py' adding 'mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py' adding 'mmtbx/regression/tst_holton_geometry_validation.py' adding 'mmtbx/regression/tst_isomorphous_difference_misc.py' adding 'mmtbx/regression/tst_ligand_interactions.py' adding 'mmtbx/regression/tst_ligand_ncs.py' adding 'mmtbx/regression/tst_loop_closure.py' adding 'mmtbx/regression/tst_lrv.py' adding 'mmtbx/regression/tst_map_model_cc.py' adding 'mmtbx/regression/tst_map_type_parser.py' adding 'mmtbx/regression/tst_maps_misc.py' adding 'mmtbx/regression/tst_metal_link_1.py' adding 'mmtbx/regression/tst_minimize_chain.py' adding 'mmtbx/regression/tst_ml_estimate.py' adding 'mmtbx/regression/tst_mmtbx_refinement_wrappers.py' adding 'mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py' adding 'mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py' adding 'mmtbx/regression/tst_model_map.py' adding 'mmtbx/regression/tst_model_vs_map.py' adding 'mmtbx/regression/tst_model_vs_sequence.py' adding 'mmtbx/regression/tst_models_to_from_chains.py' adding 'mmtbx/regression/tst_msa.py' adding 'mmtbx/regression/tst_mtz2map.py' adding 'mmtbx/regression/tst_multi_residue_class.py' adding 'mmtbx/regression/tst_ordered_solvent.py' adding 'mmtbx/regression/tst_origin_ids.py' adding 'mmtbx/regression/tst_pdbtools.py' adding 'mmtbx/regression/tst_polder.py' adding 'mmtbx/regression/tst_polder_1.py' adding 'mmtbx/regression/tst_polder_2.py' adding 'mmtbx/regression/tst_polder_3.py' adding 'mmtbx/regression/tst_polder_4.py' adding 'mmtbx/regression/tst_polder_box.py' adding 'mmtbx/regression/tst_polder_ccs.py' adding 'mmtbx/regression/tst_probe.py' adding 'mmtbx/regression/tst_process_predicted_model.py' adding 'mmtbx/regression/tst_process_predicted_model_cif.py' adding 'mmtbx/regression/tst_prune_model.py' adding 'mmtbx/regression/tst_psi_phi_extraction.py' adding 'mmtbx/regression/tst_rank_scale_map.py' adding 'mmtbx/regression/tst_rdkit_utils_fragmentation.py' adding 'mmtbx/regression/tst_rdkit_utils_molecule.py' adding 'mmtbx/regression/tst_real_space_correlation.py' adding 'mmtbx/regression/tst_reduce.py' adding 'mmtbx/regression/tst_reduce2_no_symmetry.py' adding 'mmtbx/regression/tst_reduce_cryoem_resolution.py' adding 'mmtbx/regression/tst_reduce_custom_bond.py' adding 'mmtbx/regression/tst_reduce_switch.py' adding 'mmtbx/regression/tst_reduce_timeout.py' adding 'mmtbx/regression/tst_refine_anomalous_substructure.py' adding 'mmtbx/regression/tst_regularize_from_pdb.py' adding 'mmtbx/regression/tst_regularize_from_pdb_cif.py' adding 'mmtbx/regression/tst_ribbons.py' adding 'mmtbx/regression/tst_rigid_bond_test.py' adding 'mmtbx/regression/tst_ringer.py' adding 'mmtbx/regression/tst_sampled_model_density.py' adding 'mmtbx/regression/tst_scattering_table.py' adding 'mmtbx/regression/tst_scattering_type_registry.py' adding 'mmtbx/regression/tst_schrodinger_interface.py' adding 'mmtbx/regression/tst_sequence_validation.py' adding 'mmtbx/regression/tst_sort_hetatms.py' adding 'mmtbx/regression/tst_special_term_at_end.py' adding 'mmtbx/regression/tst_ss_validation_long_chainids.py' adding 'mmtbx/regression/tst_statistics_output.py' adding 'mmtbx/regression/tst_superpose.py' adding 'mmtbx/regression/tst_table_one.py' adding 'mmtbx/regression/tst_utils.py' adding 'mmtbx/regression/tst_validate_ligands.py' adding 'mmtbx/regression/tst_validate_ligands_2.py' adding 'mmtbx/regression/tst_validate_ligands_3.py' adding 'mmtbx/regression/tst_validate_ligands_4.py' adding 'mmtbx/regression/tst_validation_summary.py' adding 'mmtbx/regression/model/__init__.py' adding 'mmtbx/regression/model/tst_model.py' adding 'mmtbx/regression/model/tst_model_2.py' adding 'mmtbx/regression/model/tst_model_biomt_mtrix.py' adding 'mmtbx/regression/model/tst_model_biomt_mtrix_2.py' adding 'mmtbx/regression/model/tst_model_cart_ref_restraints.py' adding 'mmtbx/regression/model/tst_model_dedeuterate.py' adding 'mmtbx/regression/model/tst_model_get_vdw_radii.py' adding 'mmtbx/regression/model/tst_model_merge.py' adding 'mmtbx/regression/model/tst_model_mtrix.py' adding 'mmtbx/regression/model/tst_model_ncs.py' adding 'mmtbx/regression/model/tst_model_neutralize_scatterers.py' adding 'mmtbx/regression/model/tst_model_pairs_within.py' adding 'mmtbx/regression/model/tst_model_ramachandran.py' adding 'mmtbx/regression/model/tst_model_remove_alternative_conformations.py' adding 'mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py' adding 'mmtbx/regression/model/tst_model_symmetry.py' adding 'mmtbx/regression/model/tst_model_tors_ref_restraints.py' adding 'mmtbx/regression/model/tst_model_utils_merge_models.py' adding 'mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py' adding 'mmtbx/regression/ncs/__init__.py' adding 'mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py' adding 'mmtbx/regression/ncs/tst_minimization_ncs_constraints.py' adding 'mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py' adding 'mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py' adding 'mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py' adding 'mmtbx/regression/ncs/tst_ncs_restraints_group_list.py' adding 'mmtbx/regression/ncs/tst_ncs_search.py' adding 'mmtbx/regression/ncs/tst_ncs_search_flips.py' adding 'mmtbx/regression/ncs/tst_ncs_utils.py' adding 'mmtbx/regression/ncs/tst_restraints.py' adding 'mmtbx/regression/tls/__init__.py' adding 'mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py' adding 'mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py' adding 'mmtbx/regression/tls/tst_get_t_scheme.py' adding 'mmtbx/regression/tls/tst_tls.py' adding 'mmtbx/regression/tls/tst_tls_analysis.py' adding 'mmtbx/regression/tls/tst_tls_as_xyz.py' adding 'mmtbx/regression/tls/tst_tls_optimise_amplitudes.py' adding 'mmtbx/regression/tls/tst_tls_refinement_fft.py' adding 'mmtbx/regression/tls/tst_tls_utils.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py' adding 'mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py' adding 'mmtbx/ringer/__init__.py' adding 'mmtbx/ringer/em_rolling.py' adding 'mmtbx/ringer/em_rscc.py' adding 'mmtbx/ringer/em_scoring.py' adding 'mmtbx/ringer/emringer.py' adding 'mmtbx/ringer/tst_em_rscc.py' adding 'mmtbx/ringer/tst_emringer.py' adding 'mmtbx/rotamer/__init__.py' adding 'mmtbx/rotamer/graphics.py' adding 'mmtbx/rotamer/n_dim_table.py' adding 'mmtbx/rotamer/nqh.py' adding 'mmtbx/rotamer/ramachandran_eval.py' adding 'mmtbx/rotamer/ramachandran_eval_deprecated.py' adding 'mmtbx/rotamer/rotamer_eval.py' adding 'mmtbx/rotamer/sidechain_angles.py' adding 'mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py' adding 'mmtbx/rotamer/tst_rotamer_eval.py' adding 'mmtbx/rsr/__init__.py' adding 'mmtbx/rsr/tst.py' adding 'mmtbx/scaling/__init__.py' adding 'mmtbx/scaling/absence_likelihood.py' adding 'mmtbx/scaling/absences.py' adding 'mmtbx/scaling/absolute_scaling.py' adding 'mmtbx/scaling/basic_analyses.py' adding 'mmtbx/scaling/bayesian_estimator.py' adding 'mmtbx/scaling/data_statistics.py' adding 'mmtbx/scaling/fa_estimation.py' adding 'mmtbx/scaling/make_param.py' adding 'mmtbx/scaling/massage_twin_detwin_data.py' adding 'mmtbx/scaling/matthews.py' adding 'mmtbx/scaling/mean_f_rms_f.py' adding 'mmtbx/scaling/outlier_plots.py' adding 'mmtbx/scaling/outlier_rejection.py' adding 'mmtbx/scaling/pair_analyses.py' adding 'mmtbx/scaling/plan_sad_experiment.py' adding 'mmtbx/scaling/pre_scale.py' adding 'mmtbx/scaling/random_omit.py' adding 'mmtbx/scaling/relative_scaling.py' adding 'mmtbx/scaling/relative_wilson.py' adding 'mmtbx/scaling/remove_outliers.py' adding 'mmtbx/scaling/sigmaa_estimation.py' adding 'mmtbx/scaling/ta_alpha_beta_calc.py' adding 'mmtbx/scaling/thorough_outlier_test.py' adding 'mmtbx/scaling/tst_absences.py' adding 'mmtbx/scaling/tst_bayesian_estimator.py' adding 'mmtbx/scaling/tst_massage_data.py' adding 'mmtbx/scaling/tst_mean_f_rms_f.py' adding 'mmtbx/scaling/tst_outlier.py' adding 'mmtbx/scaling/tst_plan_sad_experiment.py' adding 'mmtbx/scaling/tst_scaling.py' adding 'mmtbx/scaling/tst_sigmaa.py' adding 'mmtbx/scaling/tst_xtriage.py' adding 'mmtbx/scaling/tst_xtriage_twin_analyses.py' adding 'mmtbx/scaling/twin_analyses.py' adding 'mmtbx/scaling/twmad_scale.py' adding 'mmtbx/scaling/xtriage.py' adding 'mmtbx/secondary_structure/__init__.py' adding 'mmtbx/secondary_structure/find_ss_from_ca.py' adding 'mmtbx/secondary_structure/nucleic_acids.py' adding 'mmtbx/secondary_structure/proteins.py' adding 'mmtbx/secondary_structure/regularize_from_pdb.py' adding 'mmtbx/secondary_structure/secondary_structure_params.py' adding 'mmtbx/secondary_structure/ss_validation.py' adding 'mmtbx/secondary_structure/tst.py' adding 'mmtbx/secondary_structure/tst_insertion_codes.py' adding 'mmtbx/secondary_structure/tst_segid.py' adding 'mmtbx/secondary_structure/utils.py' adding 'mmtbx/secondary_structure/build/__init__.py' adding 'mmtbx/secondary_structure/build/ss_idealization.py' adding 'mmtbx/secondary_structure/build/tst_1.py' adding 'mmtbx/secondary_structure/build/tst_2.py' adding 'mmtbx/secondary_structure/build/tst_3.py' adding 'mmtbx/secondary_structure/build/tst_io.py' adding 'mmtbx/secondary_structure/build/tst_ss_id_ncs.py' adding 'mmtbx/sisa/__init__.py' adding 'mmtbx/sisa/optimize/__init__.py' adding 'mmtbx/sisa/optimize/mod_ga.py' adding 'mmtbx/sisa/optimize/mod_input.py' adding 'mmtbx/sisa/optimize/mod_masks.py' adding 'mmtbx/sisa/optimize/mod_mtz.py' adding 'mmtbx/sisa/optimize/mod_optimize.py' adding 'mmtbx/sisa/optimize/mod_util.py' adding 'mmtbx/solvent/__init__.py' adding 'mmtbx/solvent/ensemble_ordered_solvent.py' adding 'mmtbx/solvent/map_to_water.py' adding 'mmtbx/solvent/ordered_solvent.py' adding 'mmtbx/suitename/__init__.py' adding 'mmtbx/suitename/diangle.py' adding 'mmtbx/suitename/dualparse.py' adding 'mmtbx/suitename/mainchain.py' adding 'mmtbx/suitename/suitealyze.py' adding 'mmtbx/suitename/suitename.py' adding 'mmtbx/suitename/suitenamedefs.py' adding 'mmtbx/suitename/suiteninit.py' adding 'mmtbx/suitename/suiteninput.py' adding 'mmtbx/suitename/suitenout.py' adding 'mmtbx/suitename/suites.py' adding 'mmtbx/suitename/transdent.py' adding 'mmtbx/tls/__init__.py' adding 'mmtbx/tls/analysis.py' adding 'mmtbx/tls/command_line.py' adding 'mmtbx/tls/decompose.py' adding 'mmtbx/tls/ladp.py' adding 'mmtbx/tls/optimise_amplitudes.py' adding 'mmtbx/tls/perm10.py' adding 'mmtbx/tls/perm11.py' adding 'mmtbx/tls/perm12.py' adding 'mmtbx/tls/perm13.py' adding 'mmtbx/tls/perm14.py' adding 'mmtbx/tls/perm15.py' adding 'mmtbx/tls/tls_as_xyz.py' adding 'mmtbx/tls/tools.py' adding 'mmtbx/tls/utils.py' adding 'mmtbx/twinning/__init__.py' adding 'mmtbx/twinning/probabalistic_detwinning.py' adding 'mmtbx/twinning/twin_f_model.py' adding 'mmtbx/utils/__init__.py' adding 'mmtbx/utils/fab_elbow_angle.py' adding 'mmtbx/utils/grid2d.py' adding 'mmtbx/utils/ntc.py' adding 'mmtbx/utils/rotatable_bonds.py' adding 'mmtbx/utils/tst_switch_rotamers.py' adding 'mmtbx/validation/__init__.py' adding 'mmtbx/validation/analyze_peptides.py' adding 'mmtbx/validation/barbed_wire_analysis.py' adding 'mmtbx/validation/cablam.py' adding 'mmtbx/validation/cbd_utils.py' adding 'mmtbx/validation/cbetadev.py' adding 'mmtbx/validation/chain_comparison.py' adding 'mmtbx/validation/clashscore.py' adding 'mmtbx/validation/clashscore2.py' adding 'mmtbx/validation/comparama.py' adding 'mmtbx/validation/comprehensive_residue.py' adding 'mmtbx/validation/convert_lists.py' adding 'mmtbx/validation/datasets.py' adding 'mmtbx/validation/ensembles.py' adding 'mmtbx/validation/experimental.py' adding 'mmtbx/validation/fav_lists.py' adding 'mmtbx/validation/graphics.py' adding 'mmtbx/validation/holton_geometry_validation.py' adding 'mmtbx/validation/ligand_interactions.py' adding 'mmtbx/validation/ligands.py' adding 'mmtbx/validation/mean_devs_PRO_phi_psi.py' adding 'mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py' adding 'mmtbx/validation/mean_devs_others_phi_psi.py' adding 'mmtbx/validation/model_properties.py' adding 'mmtbx/validation/mp_validate_bonds.py' adding 'mmtbx/validation/omegalyze.py' adding 'mmtbx/validation/phi_psi_2_data.py' adding 'mmtbx/validation/rama_z.py' adding 'mmtbx/validation/ramalyze.py' adding 'mmtbx/validation/restraints.py' adding 'mmtbx/validation/rna_validate.py' adding 'mmtbx/validation/rotalyze.py' adding 'mmtbx/validation/sequence.py' adding 'mmtbx/validation/undowser.py' adding 'mmtbx/validation/undowser2.py' adding 'mmtbx/validation/utils.py' adding 'mmtbx/validation/validate_ligands.py' adding 'mmtbx/validation/waters.py' adding 'mmtbx/validation/molprobity/__init__.py' adding 'mmtbx/validation/molprobity/kinemage_templates.py' adding 'mmtbx/validation/molprobity/mp_geo.py' adding 'mmtbx/validation/molprobity/percentile_clashscore.py' adding 'mmtbx/validation/molprobity/percentile_mpscore.py' adding 'mmtbx/validation/molprobity/probescore_ligand.py' adding 'mmtbx/validation/molprobity/table_from_json.py' adding 'mmtbx/validation/ramachandran/__init__.py' adding 'mmtbx/validation/ramachandran/convert_from_text.py' adding 'mmtbx/validation/regression/__init__.py' adding 'mmtbx/validation/regression/run_restraints.py' adding 'mmtbx/validation/regression/tst_barbed_wire_analysis.py' adding 'mmtbx/validation/regression/tst_cablam.py' adding 'mmtbx/validation/regression/tst_cablam_2.py' adding 'mmtbx/validation/regression/tst_cbetadev.py' adding 'mmtbx/validation/regression/tst_cbetadev_02.py' adding 'mmtbx/validation/regression/tst_chiral_validation.py' adding 'mmtbx/validation/regression/tst_clashscore.py' adding 'mmtbx/validation/regression/tst_clashscore_2.py' adding 'mmtbx/validation/regression/tst_do_flips_clashscore.py' adding 'mmtbx/validation/regression/tst_experimental.py' adding 'mmtbx/validation/regression/tst_find_region_max_value.py' adding 'mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py' adding 'mmtbx/validation/regression/tst_keep_hydrogens.py' adding 'mmtbx/validation/regression/tst_model_properties.py' adding 'mmtbx/validation/regression/tst_molprobity_1.py' adding 'mmtbx/validation/regression/tst_molprobity_2.py' adding 'mmtbx/validation/regression/tst_molprobity_3.py' adding 'mmtbx/validation/regression/tst_molprobity_4.py' adding 'mmtbx/validation/regression/tst_molprobity_5.py' adding 'mmtbx/validation/regression/tst_molprobity_arguments.py' adding 'mmtbx/validation/regression/tst_mp_geo.py' adding 'mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py' adding 'mmtbx/validation/regression/tst_mp_geo_endtoend.py' adding 'mmtbx/validation/regression/tst_mp_validate_bonds.py' adding 'mmtbx/validation/regression/tst_omegalyze.py' adding 'mmtbx/validation/regression/tst_probe2_asu_bond_proxies.py' adding 'mmtbx/validation/regression/tst_rama_z_01.py' adding 'mmtbx/validation/regression/tst_rama_z_02.py' adding 'mmtbx/validation/regression/tst_ramalyze.py' adding 'mmtbx/validation/regression/tst_ramalyze2.py' adding 'mmtbx/validation/regression/tst_ramalyze_rare.py' adding 'mmtbx/validation/regression/tst_restraints.py' adding 'mmtbx/validation/regression/tst_rna_validate.py' adding 'mmtbx/validation/regression/tst_rotalyze.py' adding 'mmtbx/validation/regression/tst_suitename.py' adding 'mmtbx/validation/regression/tst_symmetry_SS.py' adding 'mmtbx/validation/regression/tst_undowser.py' adding 'mmtbx/validation/regression/tst_undowser2.py' adding 'mmtbx/validation/regression/tst_utils.py' adding 'mmtbx/validation/regression/tst_waters.py' adding 'mmtbx/wwpdb/__init__.py' adding 'mmtbx/wwpdb/rcsb_entry_request.py' adding 'mmtbx/wwpdb/rcsb_web_services.py' adding 'mmtbx/wwpdb/tst_rcsb_entry_request.py' adding 'mmtbx/wwpdb/tst_rcsb_web_services.py' adding 'omptbx/__init__.py' adding 'omptbx/tst.py' adding 'qttbx/__init__.py' adding 'qttbx/phil.py' adding 'qttbx/qt.py' adding 'qttbx/run_tests.py' adding 'qttbx/examples/__init__.py' adding 'qttbx/examples/_helpers.py' adding 'qttbx/examples/data_manager_example.py' adding 'qttbx/examples/phil_widgets_example.py' adding 'qttbx/regression/__init__.py' adding 'qttbx/regression/tst_chat_agent_core.py' adding 'qttbx/regression/tst_chat_approval_coordinator.py' adding 'qttbx/regression/tst_chat_artifact_panel.py' adding 'qttbx/regression/tst_chat_auto_height.py' adding 'qttbx/regression/tst_chat_conversation_widgets.py' adding 'qttbx/regression/tst_chat_credentials_dialog.py' adding 'qttbx/regression/tst_chat_diagnostics.py' adding 'qttbx/regression/tst_chat_eliding.py' adding 'qttbx/regression/tst_chat_image.py' adding 'qttbx/regression/tst_chat_logging_setup.py' adding 'qttbx/regression/tst_chat_markdown.py' adding 'qttbx/regression/tst_chat_mcp_client.py' adding 'qttbx/regression/tst_chat_message_bubble.py' adding 'qttbx/regression/tst_chat_message_input.py' adding 'qttbx/regression/tst_chat_overlay_anchor.py' adding 'qttbx/regression/tst_chat_profile.py' adding 'qttbx/regression/tst_chat_question_card.py' adding 'qttbx/regression/tst_chat_runner.py' adding 'qttbx/regression/tst_chat_search.py' adding 'qttbx/regression/tst_chat_session.py' adding 'qttbx/regression/tst_chat_skills.py' adding 'qttbx/regression/tst_chat_storage.py' adding 'qttbx/regression/tst_chat_storage_session.py' adding 'qttbx/regression/tst_chat_subagent.py' adding 'qttbx/regression/tst_chat_subagent_view.py' adding 'qttbx/regression/tst_chat_tool_approval.py' adding 'qttbx/regression/tst_chat_tools.py' adding 'qttbx/regression/tst_chat_window_chrome.py' adding 'qttbx/regression/tst_data_manager_widget.py' adding 'qttbx/regression/tst_phil_widgets.py' adding 'qttbx/regression/tst_run_tests_manifest.py' adding 'qttbx/viewers/__init__.py' adding 'qttbx/viewers/chimerax.py' adding 'qttbx/widgets/__init__.py' adding 'qttbx/widgets/font_init.py' adding 'qttbx/widgets/chat/__init__.py' adding 'qttbx/widgets/chat/artifact.py' adding 'qttbx/widgets/chat/artifact_panel.py' adding 'qttbx/widgets/chat/auto_height.py' adding 'qttbx/widgets/chat/chat_top_bar.py' adding 'qttbx/widgets/chat/conversation_list.py' adding 'qttbx/widgets/chat/conversation_search.py' adding 'qttbx/widgets/chat/conversation_view.py' adding 'qttbx/widgets/chat/credentials_dialog.py' adding 'qttbx/widgets/chat/diagnostics.py' adding 'qttbx/widgets/chat/edge_rail.py' adding 'qttbx/widgets/chat/eliding.py' adding 'qttbx/widgets/chat/image_cache.py' adding 'qttbx/widgets/chat/image_lightbox.py' adding 'qttbx/widgets/chat/logging_setup.py' adding 'qttbx/widgets/chat/markdown_export.py' adding 'qttbx/widgets/chat/markdown_view.py' adding 'qttbx/widgets/chat/message_bubble.py' adding 'qttbx/widgets/chat/message_input.py' adding 'qttbx/widgets/chat/overlay_anchor.py' adding 'qttbx/widgets/chat/question_card.py' adding 'qttbx/widgets/chat/search_bar.py' adding 'qttbx/widgets/chat/tool_approval.py' adding 'qttbx/widgets/chat/tool_call_disclosure.py' adding 'qttbx/widgets/chat/agent/__init__.py' adding 'qttbx/widgets/chat/agent/approval.py' adding 'qttbx/widgets/chat/agent/base.py' adding 'qttbx/widgets/chat/agent/conversation.py' adding 'qttbx/widgets/chat/agent/errors.py' adding 'qttbx/widgets/chat/agent/events.py' adding 'qttbx/widgets/chat/agent/mcp_client.py' adding 'qttbx/widgets/chat/agent/paths.py' adding 'qttbx/widgets/chat/agent/profile.py' adding 'qttbx/widgets/chat/agent/runner.py' adding 'qttbx/widgets/chat/agent/session.py' adding 'qttbx/widgets/chat/agent/skills.py' adding 'qttbx/widgets/chat/agent/storage.py' adding 'qttbx/widgets/chat/agent/subagent.py' adding 'qttbx/widgets/chat/agent/tools.py' adding 'qttbx/widgets/data_manager/__init__.py' adding 'qttbx/widgets/data_manager/_binding_popup.py' adding 'qttbx/widgets/data_manager/_delegate.py' adding 'qttbx/widgets/data_manager/_phil_helpers.py' adding 'qttbx/widgets/data_manager/_table_model.py' adding 'qttbx/widgets/data_manager/widget.py' adding 'qttbx/widgets/phil/__init__.py' adding 'qttbx/widgets/phil/_colors.py' adding 'qttbx/widgets/phil/atom_selection.py' adding 'qttbx/widgets/phil/bool_widget.py' adding 'qttbx/widgets/phil/choice_widget.py' adding 'qttbx/widgets/phil/delegate.py' adding 'qttbx/widgets/phil/float_widget.py' adding 'qttbx/widgets/phil/floats_widget.py' adding 'qttbx/widgets/phil/int_widget.py' adding 'qttbx/widgets/phil/ints_widget.py' adding 'qttbx/widgets/phil/key_widget.py' adding 'qttbx/widgets/phil/multiple.py' adding 'qttbx/widgets/phil/path_widget.py' adding 'qttbx/widgets/phil/qstr_widget.py' adding 'qttbx/widgets/phil/space_group.py' adding 'qttbx/widgets/phil/str_widget.py' adding 'qttbx/widgets/phil/strings_widget.py' adding 'qttbx/widgets/phil/text_base.py' adding 'qttbx/widgets/phil/unit_cell.py' adding 'qttbx/widgets/phil/words_widget.py' adding 'rstbx/__init__.py' adding 'rstbx/run_tests.py' adding 'rstbx/utils.py' adding 'rstbx/apps/__init__.py' adding 'rstbx/apps/dual_resolution_helpers.py' adding 'rstbx/apps/slip_helpers.py' adding 'rstbx/apps/spot_markup.py' adding 'rstbx/apps/stills/__init__.py' adding 'rstbx/apps/stills/deltapsi_refinement_preceding_integration.py' adding 'rstbx/apps/stills/dials_refinement_preceding_integration.py' adding 'rstbx/apps/stills/simple_integration.py' adding 'rstbx/apps/stills/stills_integration.py' adding 'rstbx/apps/stills/util.py' adding 'rstbx/array_family/__init__.py' adding 'rstbx/array_family/flex.py' adding 'rstbx/bandpass/__init__.py' adding 'rstbx/bandpass/simulated_annealing.py' adding 'rstbx/bpcx/__init__.py' adding 'rstbx/bpcx/compare_mosflm_xds.py' adding 'rstbx/bpcx/ersatz_misset.py' adding 'rstbx/bpcx/uc1_2.py' adding 'rstbx/bpcx/uc1_2_positions.py' adding 'rstbx/bpcx/uc1_2_positions_idx.py' adding 'rstbx/bpcx/uc1_2_validate.py' adding 'rstbx/bpcx/uc1_2a.py' adding 'rstbx/bpcx/detector_model/__init__.py' adding 'rstbx/bpcx/detector_model/detector.py' adding 'rstbx/bpcx/detector_model/instrument_specifics.py' adding 'rstbx/bpcx/detector_model/tst_detector_model.py' adding 'rstbx/cftbx/__init__.py' adding 'rstbx/cftbx/coordinate_frame_converter.py' adding 'rstbx/cftbx/coordinate_frame_helpers.py' adding 'rstbx/cftbx/tst_coordinate_frame_converter.py' adding 'rstbx/command_line/__init__.py' adding 'rstbx/command_line/example_viewer.py' adding 'rstbx/command_line/index.py' adding 'rstbx/command_line/simage.create.py' adding 'rstbx/command_line/simage.explore_completeness.py' adding 'rstbx/command_line/simage.solver.py' adding 'rstbx/command_line/simage.wx_display.py' adding 'rstbx/command_line/slip_viewer.py' adding 'rstbx/command_line/viewer.py' adding 'rstbx/detectors/__init__.py' adding 'rstbx/detectors/silicon.py' adding 'rstbx/dials_core/__init__.py' adding 'rstbx/dials_core/integration_core.py' adding 'rstbx/diffraction/__init__.py' adding 'rstbx/diffraction/tst_ewald_sphere.py' adding 'rstbx/diffraction/tst_partial_derivatives.py' adding 'rstbx/diffraction/tst_predict.py' adding 'rstbx/diffraction/fastbragg/__init__.py' adding 'rstbx/diffraction/fastbragg/tst_bragg_minimal.py' adding 'rstbx/diffraction/fastbragg/tst_utils_clustering.py' adding 'rstbx/dps_core/__init__.py' adding 'rstbx/dps_core/basis_choice.py' adding 'rstbx/dps_core/cell_assessment.py' adding 'rstbx/dps_core/constrainment.py' adding 'rstbx/dps_core/lepage.py' adding 'rstbx/dps_core/sampling.py' adding 'rstbx/dps_core/tst_iotbx_converter.py' adding 'rstbx/dps_core/zuoreduction.py' adding 'rstbx/indexing/__init__.py' adding 'rstbx/indexing/do_index.py' adding 'rstbx/indexing/tst_auto_monoscan.py' adding 'rstbx/indexing/tst_dataset1.py' adding 'rstbx/indexing_api/__init__.py' adding 'rstbx/indexing_api/basis_choice.py' adding 'rstbx/indexing_api/force_cell.py' adding 'rstbx/indexing_api/lattice.py' adding 'rstbx/indexing_api/nearest_neighbor.py' adding 'rstbx/indexing_api/outlier_detection.py' adding 'rstbx/indexing_api/outlier_procedure.py' adding 'rstbx/indexing_api/sampling.py' adding 'rstbx/indexing_api/test_dps.py' adding 'rstbx/indexing_api/tools.py' adding 'rstbx/new_horizons/__init__.py' adding 'rstbx/new_horizons/index.py' adding 'rstbx/new_horizons/oscillation_shots.py' adding 'rstbx/new_horizons/pixel_spread.py' adding 'rstbx/new_horizons/speckfinder.py' adding 'rstbx/new_horizons/spot_shape.py' adding 'rstbx/new_horizons/stats_index.py' adding 'rstbx/outlier_spots/__init__.py' adding 'rstbx/outlier_spots/fit_distribution.py' adding 'rstbx/phil/__init__.py' adding 'rstbx/phil/phil_preferences.py' adding 'rstbx/phil/preferences.py' adding 'rstbx/phil/scope.py' adding 'rstbx/simage/__init__.py' adding 'rstbx/simage/create.py' adding 'rstbx/simage/explore_completeness.py' adding 'rstbx/simage/integrate_crude.py' adding 'rstbx/simage/refine_uc_cr.py' adding 'rstbx/simage/run_labelit_index.py' adding 'rstbx/simage/run_spotfinder.py' adding 'rstbx/simage/solver.py' adding 'rstbx/simage/tst.py' adding 'rstbx/simage/wx_display.py' adding 'rstbx/simulation/__init__.py' adding 'rstbx/simulation/constants.py' adding 'rstbx/simulation/sim_pdf.py' adding 'rstbx/simulation/sim_utils.py' adding 'rstbx/simulation/tst_xfel1_simple.py' adding 'rstbx/slip_viewer/__init__.py' adding 'rstbx/slip_viewer/calibration_frame.py' adding 'rstbx/slip_viewer/example_frame_plugin_hidden.py' adding 'rstbx/slip_viewer/frame.py' adding 'rstbx/slip_viewer/pyslip.py' adding 'rstbx/slip_viewer/ring_frame.py' adding 'rstbx/slip_viewer/score_frame.py' adding 'rstbx/slip_viewer/slip_display.py' adding 'rstbx/slip_viewer/slip_viewer_image_factory.py' adding 'rstbx/slip_viewer/tile_generation.py' adding 'rstbx/slip_viewer/uc_frame.py' adding 'rstbx/sublattice_support/__init__.py' adding 'rstbx/sublattice_support/change_basis.py' adding 'rstbx/sublattice_support/tst_sublattice.py' adding 'rstbx/symmetry/__init__.py' adding 'rstbx/symmetry/sgtbx_adaptor.py' adding 'rstbx/symmetry/subgroup.py' adding 'rstbx/symmetry/constraints/__init__.py' adding 'rstbx/symmetry/constraints/g_gradients.py' adding 'rstbx/symmetry/constraints/parameter_reduction.py' adding 'rstbx/viewer/__init__.py' adding 'rstbx/viewer/calibration.py' adding 'rstbx/viewer/calibration_frame.py' adding 'rstbx/viewer/controls.py' adding 'rstbx/viewer/dataset.py' adding 'rstbx/viewer/display.py' adding 'rstbx/viewer/drivers.py' adding 'rstbx/viewer/frame.py' adding 'rstbx/viewer/indexing.py' adding 'rstbx/viewer/integration.py' adding 'rstbx/viewer/pixels3d.py' adding 'rstbx/viewer/processing.py' adding 'rstbx/viewer/results_base.py' adding 'rstbx/viewer/spotfinder_frame.py' adding 'rstbx/viewer/spotfinder_wrap.py' adding 'rstbx/viewer/tst.py' adding 'scitbx/__init__.py' adding 'scitbx/cross_entropy.py' adding 'scitbx/cubicle_neighbors.py' adding 'scitbx/differential_evolution.py' adding 'scitbx/direct_search_simulated_annealing.py' adding 'scitbx/fftpack.py' adding 'scitbx/genetic_algorithm_with_mp.py' adding 'scitbx/golden_section_search.py' adding 'scitbx/lbfgsb.py' adding 'scitbx/libtbx_refresh.py' adding 'scitbx/minimizers.py' adding 'scitbx/minpack.py' adding 'scitbx/r3_utils.py' adding 'scitbx/regular_grid_on_unit_sphere.py' adding 'scitbx/restraints.py' adding 'scitbx/run_tests.py' adding 'scitbx/simplex.py' adding 'scitbx/smoothing.py' adding 'scitbx/array_family/__init__.py' adding 'scitbx/array_family/flex.py' adding 'scitbx/array_family/shared.py' adding 'scitbx/array_family/accessors/__init__.py' adding 'scitbx/array_family/boost_python/__init__.py' adding 'scitbx/array_family/boost_python/regression_test.py' adding 'scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py' adding 'scitbx/array_family/boost_python/tst_flex.py' adding 'scitbx/array_family/boost_python/tst_flex_argument_passing.py' adding 'scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py' adding 'scitbx/array_family/boost_python/tst_numpy_bridge.py' adding 'scitbx/array_family/boost_python/tst_numpy_scalar_conversions.py' adding 'scitbx/array_family/boost_python/tst_shared.py' adding 'scitbx/array_family/boost_python/tst_smart_selection.py' adding 'scitbx/array_family/detail/__init__.py' adding 'scitbx/boost_python/__init__.py' adding 'scitbx/command_line/__init__.py' adding 'scitbx/command_line/apply_tapenade_hints.py' adding 'scitbx/command_line/generate_error_h.py' adding 'scitbx/command_line/histogram.py' adding 'scitbx/command_line/show_exp_times.py' adding 'scitbx/command_line/show_sizes.py' adding 'scitbx/command_line/unicode_examples.py' adding 'scitbx/dtmin/__init__.py' adding 'scitbx/dtmin/auxiliary.py' adding 'scitbx/dtmin/bounds.py' adding 'scitbx/dtmin/compulsory.py' adding 'scitbx/dtmin/min_logging.py' adding 'scitbx/dtmin/minimizer.py' adding 'scitbx/dtmin/optional.py' adding 'scitbx/dtmin/realsymmetricpseudoinverse.py' adding 'scitbx/dtmin/refinebase.py' adding 'scitbx/dtmin/reparams.py' adding 'scitbx/dtmin/twisted_gaussian.py' adding 'scitbx/dtmin/regression/__init__.py' adding 'scitbx/dtmin/regression/tst_dtmin_basic.py' adding 'scitbx/dtmin/regression/tst_dtmin_booth.py' adding 'scitbx/dtmin/regression/tst_dtmin_twisted.py' adding 'scitbx/error/__init__.py' adding 'scitbx/error/tst_error.py' adding 'scitbx/examples/__init__.py' adding 'scitbx/examples/bootstrap.py' adding 'scitbx/examples/chebyshev_lsq_example.py' adding 'scitbx/examples/flex_array_loops.py' adding 'scitbx/examples/flex_grid.py' adding 'scitbx/examples/functions.py' adding 'scitbx/examples/immoptibox_ports.py' adding 'scitbx/examples/integrating_a_weighted_sinc_function.py' adding 'scitbx/examples/lbfgs_linear_least_squares_fit.py' adding 'scitbx/examples/lbfgs_recipe.py' adding 'scitbx/examples/minimizer_comparisons.py' adding 'scitbx/examples/principal_axes_of_inertia.py' adding 'scitbx/examples/rigid_body_refinement_core.py' adding 'scitbx/examples/bevington/__init__.py' adding 'scitbx/examples/bevington/silver.py' adding 'scitbx/glmtbx/__init__.py' adding 'scitbx/glmtbx/boost_python/__init__.py' adding 'scitbx/glmtbx/tests/__init__.py' adding 'scitbx/glmtbx/tests/tst.py' adding 'scitbx/graph/__init__.py' adding 'scitbx/graph/rigidity.py' adding 'scitbx/graph/rigidity_matrix_symbolic.py' adding 'scitbx/graph/tardy_tree.py' adding 'scitbx/graph/test_cases_tardy_pdb.py' adding 'scitbx/graph/tst_rigidity.py' adding 'scitbx/graph/tst_tardy_tree.py' adding 'scitbx/graph/tst_tardy_tree_find_paths.py' adding 'scitbx/graph/tst_utils.py' adding 'scitbx/graph/utils.py' adding 'scitbx/graphics_utils/__init__.py' adding 'scitbx/graphics_utils/tst.py' adding 'scitbx/iso_surface/__init__.py' adding 'scitbx/iso_surface/tst_iso_surface.py' adding 'scitbx/lbfgs/__init__.py' adding 'scitbx/lbfgs/tst_curvatures.py' adding 'scitbx/lbfgs/tst_ext.py' adding 'scitbx/lbfgs/tst_func_free_line_search.py' adding 'scitbx/lbfgs/tst_lbfgs_fem.py' adding 'scitbx/lbfgs/tst_mpi_split_evaluator.py' adding 'scitbx/lbfgs/dev/__init__.py' adding 'scitbx/lbfgs/dev/run.py' adding 'scitbx/lbfgs/dev/twisted_gaussian.py' adding 'scitbx/linalg/__init__.py' adding 'scitbx/linalg/eigensystem.py' adding 'scitbx/linalg/ext.py' adding 'scitbx/linalg/householder.py' adding 'scitbx/linalg/svd.py' adding 'scitbx/linalg/boost_python/__init__.py' adding 'scitbx/linalg/tests/__init__.py' adding 'scitbx/linalg/tests/tst_cholesky.py' adding 'scitbx/linalg/tests/tst_eigensystem.py' adding 'scitbx/linalg/tests/tst_lapack_dsyev.py' adding 'scitbx/linalg/tests/tst_lapack_svd.py' adding 'scitbx/linalg/tests/tst_matrix.py' adding 'scitbx/linalg/tests/tst_svd.py' adding 'scitbx/line_search/__init__.py' adding 'scitbx/lstbx/__init__.py' adding 'scitbx/lstbx/normal_eqns.py' adding 'scitbx/lstbx/normal_eqns_solving.py' adding 'scitbx/lstbx/benchmarks/__init__.py' adding 'scitbx/lstbx/boost_python/__init__.py' adding 'scitbx/lstbx/tests/__init__.py' adding 'scitbx/lstbx/tests/test_problems.py' adding 'scitbx/lstbx/tests/tst_normal_equations.py' adding 'scitbx/math/__init__.py' adding 'scitbx/math/besselk.py' adding 'scitbx/math/breakpoint.py' adding 'scitbx/math/chebyshev_lsq_fit.py' adding 'scitbx/math/clustering.py' adding 'scitbx/math/cubic_spline.py' adding 'scitbx/math/curve_fitting.py' adding 'scitbx/math/des_3_100_13.py' adding 'scitbx/math/des_3_240_21.py' adding 'scitbx/math/distributions.py' adding 'scitbx/math/euler_angles.py' adding 'scitbx/math/ext.py' adding 'scitbx/math/farey.py' adding 'scitbx/math/fit_peak.py' adding 'scitbx/math/fit_quadratic_function.py' adding 'scitbx/math/fliege_mayer_400.py' adding 'scitbx/math/fliege_mayer_900.py' adding 'scitbx/math/fliege_mayer_900_ylm.py' adding 'scitbx/math/gaussian.py' adding 'scitbx/math/gaussian_fit.py' adding 'scitbx/math/gumbel.py' adding 'scitbx/math/incremental_SO3_sampling.py' adding 'scitbx/math/lefebvre.py' adding 'scitbx/math/minimum_covering_ellipsoid.py' adding 'scitbx/math/multiple_superposition.py' adding 'scitbx/math/periodogram.py' adding 'scitbx/math/scale_curves.py' adding 'scitbx/math/sieve_of_eratosthenes.py' adding 'scitbx/math/so3_lie_algebra.py' adding 'scitbx/math/spe.py' adding 'scitbx/math/sphere_sphere_intersection.py' adding 'scitbx/math/superpose.py' adding 'scitbx/math/tst_2d_zernike.py' adding 'scitbx/math/tst_bessel_zeros.py' adding 'scitbx/math/tst_multivariate_moments.py' adding 'scitbx/math/tst_so3_lie_algebra.py' adding 'scitbx/math/tst_undirected_graph.py' adding 'scitbx/math/tst_zernike.py' adding 'scitbx/math/tst_zernike_mom.py' adding 'scitbx/math/undirected_graph.py' adding 'scitbx/math/zernike_align_fft.py' adding 'scitbx/math/boost_python/__init__.py' adding 'scitbx/math/dev/__init__.py' adding 'scitbx/math/erf/__init__.py' adding 'scitbx/math/tests/__init__.py' adding 'scitbx/math/tests/tst_angle_derivative.py' adding 'scitbx/math/tests/tst_bessel.py' adding 'scitbx/math/tests/tst_clustering.py' adding 'scitbx/math/tests/tst_cubic_equation.py' adding 'scitbx/math/tests/tst_curve_fitting.py' adding 'scitbx/math/tests/tst_dmatrix.py' adding 'scitbx/math/tests/tst_error_propagation_matrix_inverse.py' adding 'scitbx/math/tests/tst_euler_angles.py' adding 'scitbx/math/tests/tst_exp_functions.py' adding 'scitbx/math/tests/tst_fit_peak.py' adding 'scitbx/math/tests/tst_fit_quadratic_function.py' adding 'scitbx/math/tests/tst_g_function.py' adding 'scitbx/math/tests/tst_gaussian.py' adding 'scitbx/math/tests/tst_gaussian_fit_1d_analytical.py' adding 'scitbx/math/tests/tst_gcd.py' adding 'scitbx/math/tests/tst_halton.py' adding 'scitbx/math/tests/tst_line_search.py' adding 'scitbx/math/tests/tst_math.py' adding 'scitbx/math/tests/tst_minimum_covering_ellipsoid.py' adding 'scitbx/math/tests/tst_orthonormal_basis.py' adding 'scitbx/math/tests/tst_periodogram.py' adding 'scitbx/math/tests/tst_quadrature.py' adding 'scitbx/math/tests/tst_r3_rotation.py' adding 'scitbx/math/tests/tst_resample.py' adding 'scitbx/math/tests/tst_similarity_indices.py' adding 'scitbx/math/tests/tst_superpose.py' adding 'scitbx/math/tests/tst_tetrahedron.py' adding 'scitbx/math/tests/tst_uniform_rotation_matrix.py' adding 'scitbx/math/tests/tst_weighted_correlation.py' adding 'scitbx/matrix/__init__.py' adding 'scitbx/matrix/row_echelon.py' adding 'scitbx/matrix/tests/__init__.py' adding 'scitbx/matrix/tests/tst_householder.py' adding 'scitbx/matrix/tests/tst_row_echelon.py' adding 'scitbx/misc/__init__.py' adding 'scitbx/python_utils/__init__.py' adding 'scitbx/python_utils/command_line.py' adding 'scitbx/python_utils/dicts.py' adding 'scitbx/python_utils/graph_tools.py' adding 'scitbx/python_utils/misc.py' adding 'scitbx/python_utils/random_transform.py' adding 'scitbx/python_utils/robust_statistics.py' adding 'scitbx/python_utils/signal_utils.py' adding 'scitbx/python_utils/tst_graph.py' adding 'scitbx/python_utils/tst_random_transform.py' adding 'scitbx/python_utils/tst_robust.py' adding 'scitbx/random/__init__.py' adding 'scitbx/random/boost_python/__init__.py' adding 'scitbx/random/tests/__init__.py' adding 'scitbx/random/tests/tst_random.py' adding 'scitbx/rigid_body/__init__.py' adding 'scitbx/rigid_body/tst.py' adding 'scitbx/rigid_body/essence/__init__.py' adding 'scitbx/rigid_body/essence/body_lib.py' adding 'scitbx/rigid_body/essence/featherstone.py' adding 'scitbx/rigid_body/essence/joint_lib.py' adding 'scitbx/rigid_body/essence/make_bundles.py' adding 'scitbx/rigid_body/essence/spatial_lib.py' adding 'scitbx/rigid_body/essence/tardy.py' adding 'scitbx/rigid_body/essence/tst_basic.py' adding 'scitbx/rigid_body/essence/tst_energy_plots.py' adding 'scitbx/rigid_body/essence/tst_tardy.py' adding 'scitbx/rigid_body/essence/wx_tardy.py' adding 'scitbx/rigid_body/proto/__init__.py' adding 'scitbx/rigid_body/proto/featherstone.py' adding 'scitbx/rigid_body/proto/free_motion_reference_impl.py' adding 'scitbx/rigid_body/proto/joint_lib.py' adding 'scitbx/rigid_body/proto/test_simulation.py' adding 'scitbx/rigid_body/proto/test_utils.py' adding 'scitbx/rigid_body/proto/tst_featherstone.py' adding 'scitbx/rigid_body/proto/tst_free_motion.py' adding 'scitbx/rigid_body/proto/tst_free_motion_hard.py' adding 'scitbx/rigid_body/proto/tst_joint_lib.py' adding 'scitbx/rigid_body/proto/tst_molecules.py' adding 'scitbx/rigid_body/proto/tst_singular.py' adding 'scitbx/rigid_body/proto/tst_spherical_refinement.py' adding 'scitbx/rigid_body/proto/utils.py' adding 'scitbx/rigid_body/proto/wx_free_motion.py' adding 'scitbx/rigid_body/proto/wx_joint_lib.py' adding 'scitbx/rigid_body/proto/wx_molecules.py' adding 'scitbx/serialization/__init__.py' adding 'scitbx/slatec/__init__.py' adding 'scitbx/source_generators/__init__.py' adding 'scitbx/source_generators/flex_fwd_h.py' adding 'scitbx/source_generators/lbfgs_fem.py' adding 'scitbx/source_generators/utils.py' adding 'scitbx/source_generators/array_family/__init__.py' adding 'scitbx/source_generators/array_family/generate_algebras.py' adding 'scitbx/source_generators/array_family/generate_all.py' adding 'scitbx/source_generators/array_family/generate_apply.py' adding 'scitbx/source_generators/array_family/generate_operator_functors.py' adding 'scitbx/source_generators/array_family/generate_operator_traits_builtin.py' adding 'scitbx/source_generators/array_family/generate_reductions.py' adding 'scitbx/source_generators/array_family/generate_std_imports.py' adding 'scitbx/source_generators/array_family/operator_functor_info.py' adding 'scitbx/sparse/__init__.py' adding 'scitbx/sparse/boost_python/__init__.py' adding 'scitbx/sparse/tests/__init__.py' adding 'scitbx/sparse/tests/tst_lu_factorization.py' adding 'scitbx/sparse/tests/tst_sparse.py' adding 'scitbx/stdlib/__init__.py' adding 'scitbx/stl/__init__.py' adding 'scitbx/stl/map.py' adding 'scitbx/stl/set.py' adding 'scitbx/stl/tst_map.py' adding 'scitbx/stl/tst_set.py' adding 'scitbx/stl/tst_vector.py' adding 'scitbx/stl/vector.py' adding 'scitbx/suffixtree/__init__.py' adding 'scitbx/suffixtree/single.py' adding 'scitbx/suffixtree/boost_python/__init__.py' adding 'scitbx/suffixtree/test/__init__.py' adding 'scitbx/suffixtree/test/tst_single.py' adding 'scitbx/tests/__init__.py' adding 'scitbx/tests/differential_evolution.py' adding 'scitbx/tests/direct_search_simulated_annealing.py' adding 'scitbx/tests/golden_section_search.py' adding 'scitbx/tests/simplex.py' adding 'scitbx/tests/tst_basic.py' adding 'scitbx/tests/tst_cubicle_neighbors.py' adding 'scitbx/tests/tst_genetic_algorithm_with_mp.py' adding 'scitbx/tests/tst_minimizer_lbfgs_general.py' adding 'scitbx/tests/tst_r3_utils.py' adding 'scitbx/tests/tst_regular_grid_on_unit_sphere.py' adding 'scitbx/tests/tst_smoothing.py' adding 'scitbx/wigner/__init__.py' adding 'scitbx/wigner/tst_wigner3j.py' adding 'serialtbx/__init__.py' adding 'serialtbx/detector/__init__.py' adding 'serialtbx/detector/cspad.py' adding 'serialtbx/detector/jungfrau.py' adding 'serialtbx/detector/rayonix.py' adding 'serialtbx/detector/xtc.py' adding 'serialtbx/detector/legacy_metrology/__init__.py' adding 'serialtbx/detector/legacy_metrology/cspad_detector.py' adding 'serialtbx/detector/legacy_metrology/generic_detector.py' adding 'serialtbx/detector/legacy_metrology/metrology.py' adding 'serialtbx/mono_simulation/__init__.py' adding 'serialtbx/mono_simulation/max_like.py' adding 'serialtbx/mono_simulation/util.py' adding 'serialtbx/util/__init__.py' adding 'serialtbx/util/construct_frame.py' adding 'serialtbx/util/energy_scan_notch_finder.py' adding 'serialtbx/util/time.py' adding 'simtbx/__init__.py' adding 'simtbx/run_tests.py' adding 'simtbx/diffBragg/__init__.py' adding 'simtbx/diffBragg/attr_list.py' adding 'simtbx/diffBragg/device.py' adding 'simtbx/diffBragg/ensemble_refine_launcher.py' adding 'simtbx/diffBragg/hopper_ensemble_utils.py' adding 'simtbx/diffBragg/hopper_io.py' adding 'simtbx/diffBragg/hopper_utils.py' adding 'simtbx/diffBragg/mpi_logger.py' adding 'simtbx/diffBragg/parameter_errors.py' adding 'simtbx/diffBragg/phil.py' adding 'simtbx/diffBragg/prep_stage2_input.py' adding 'simtbx/diffBragg/psf.py' adding 'simtbx/diffBragg/stage_two_utils.py' adding 'simtbx/diffBragg/utils.py' adding 'simtbx/diffBragg/refiners/__init__.py' adding 'simtbx/diffBragg/refiners/base_refiner.py' adding 'simtbx/diffBragg/refiners/geometry.py' adding 'simtbx/diffBragg/refiners/parameters.py' adding 'simtbx/diffBragg/refiners/stage_two_refiner.py' adding 'simtbx/diffBragg/refiners/crystal_systems/__init__.py' adding 'simtbx/diffBragg/refiners/crystal_systems/hexagonal.py' adding 'simtbx/diffBragg/refiners/crystal_systems/manager.py' adding 'simtbx/diffBragg/refiners/crystal_systems/monoclinic.py' adding 'simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py' adding 'simtbx/diffBragg/refiners/crystal_systems/tetragonal.py' adding 'simtbx/gpu/__init__.py' adding 'simtbx/gpu/tst_exafel_api.py' adding 'simtbx/gpu/tst_gpu_multisource_background.py' adding 'simtbx/gpu/tst_shoeboxes.py' adding 'simtbx/kokkos/__init__.py' adding 'simtbx/kokkos/tst_kokkos_lib.py' adding 'simtbx/modeling/FormatHDF5AttributeGeometry.py' adding 'simtbx/modeling/__init__.py' adding 'simtbx/modeling/forward_models.py' adding 'simtbx/modeling/predictions.py' adding 'simtbx/nanoBragg/__init__.py' adding 'simtbx/nanoBragg/anisotropic_mosaicity.py' adding 'simtbx/nanoBragg/nanoBragg_beam.py' adding 'simtbx/nanoBragg/nanoBragg_crystal.py' adding 'simtbx/nanoBragg/nanoBragg_gui_dialogs.py' adding 'simtbx/nanoBragg/nanoBragg_gui_frames.py' adding 'simtbx/nanoBragg/nanoBragg_gui_init.py' adding 'simtbx/nanoBragg/nanoBragg_input.py' adding 'simtbx/nanoBragg/nanoBragg_threads.py' adding 'simtbx/nanoBragg/sim_data.py' adding 'simtbx/nanoBragg/tst_anisotropic_mosaicity.py' adding 'simtbx/nanoBragg/tst_gauss_argchk.py' adding 'simtbx/nanoBragg/tst_gaussian_mosaicity.py' adding 'simtbx/nanoBragg/tst_gaussian_mosaicity2.py' adding 'simtbx/nanoBragg/tst_multisource_background.py' adding 'simtbx/nanoBragg/tst_nanoBragg_basic.py' adding 'simtbx/nanoBragg/tst_nanoBragg_cbf_write.py' adding 'simtbx/nanoBragg/tst_nanoBragg_minimal.py' adding 'simtbx/nanoBragg/tst_nanoBragg_mosaic.py' adding 'simtbx/nanoBragg/tst_nanoBragg_multipanel.py' adding 'simtbx/nanoBragg/tst_nanoBragg_pilatus.py' adding 'simtbx/nanoBragg/utils.py' adding 'simtbx/pixel/__init__.py' adding 'smtbx/__init__.py' adding 'smtbx/development.py' adding 'smtbx/libtbx_refresh.py' adding 'smtbx/run_tests.py' adding 'smtbx/utils.py' adding 'smtbx/ab_initio/__init__.py' adding 'smtbx/ab_initio/charge_flipping.py' adding 'smtbx/ab_initio/tests/__init__.py' adding 'smtbx/ab_initio/tests/tst_ab_initio_ext.py' adding 'smtbx/ab_initio/tests/tst_charge_flipping.py' adding 'smtbx/absolute_structure/__init__.py' adding 'smtbx/array_family/__init__.py' adding 'smtbx/command_line/__init__.py' adding 'smtbx/command_line/absolute_structure.py' adding 'smtbx/command_line/anom_refine.py' adding 'smtbx/command_line/benchmark_refinement.py' adding 'smtbx/command_line/masks.py' adding 'smtbx/command_line/refine.py' adding 'smtbx/masks/__init__.py' adding 'smtbx/refinement/__init__.py' adding 'smtbx/refinement/least_squares.py' adding 'smtbx/refinement/weighting_schemes.py' adding 'smtbx/refinement/constraints/__init__.py' adding 'smtbx/refinement/constraints/adp.py' adding 'smtbx/refinement/constraints/all.py' adding 'smtbx/refinement/constraints/fpfdp.py' adding 'smtbx/refinement/constraints/occupancy.py' adding 'smtbx/refinement/constraints/rigid.py' adding 'smtbx/refinement/constraints/site.py' adding 'smtbx/refinement/constraints/geometrical/__init__.py' adding 'smtbx/refinement/constraints/geometrical/all.py' adding 'smtbx/refinement/constraints/geometrical/hydrogens.py' adding 'smtbx/refinement/constraints/tests/__init__.py' adding 'smtbx/refinement/constraints/tests/tst_constrained_structure.py' adding 'smtbx/refinement/constraints/tests/tst_direction.py' adding 'smtbx/refinement/constraints/tests/tst_disorder.py' adding 'smtbx/refinement/constraints/tests/tst_lbfgs.py' adding 'smtbx/refinement/constraints/tests/tst_occupancies.py' adding 'smtbx/refinement/constraints/tests/tst_reparametrisation.py' adding 'smtbx/refinement/constraints/tests/tst_rigid.py' adding 'smtbx/refinement/constraints/tests/tst_same_group.py' adding 'smtbx/refinement/restraints/__init__.py' adding 'smtbx/refinement/restraints/adp_restraints.py' adding 'smtbx/refinement/restraints/origin_fixing_restraints.py' adding 'smtbx/regression/__init__.py' adding 'smtbx/regression/tst_commandline_anomrefine.py' adding 'smtbx/regression/tst_commandline_refine.py' adding 'smtbx/regression/test_data/__init__.py' adding 'smtbx/source_generators/__init__.py' adding 'smtbx/source_generators/flex_fwd_h.py' adding 'smtbx/stl/__init__.py' adding 'smtbx/stl/map.py' adding 'smtbx/structure_factors/__init__.py' adding 'smtbx/structure_factors/direct/__init__.py' adding 'spotfinder/__init__.py' adding 'spotfinder/exception.py' adding 'spotfinder/run_tests.py' adding 'spotfinder/applications/__init__.py' adding 'spotfinder/applications/image_viewer.py' adding 'spotfinder/applications/practical_heuristics.py' adding 'spotfinder/applications/signal_strength.py' adding 'spotfinder/applications/stats_distl.py' adding 'spotfinder/applications/wrappers.py' adding 'spotfinder/applications/heuristic_tbx/__init__.py' adding 'spotfinder/applications/heuristic_tbx/ice2.py' adding 'spotfinder/applications/heuristic_tbx/ice_nztt.py' adding 'spotfinder/applications/heuristic_tbx/method2_resolution.py' adding 'spotfinder/applications/heuristic_tbx/spotreporter.py' adding 'spotfinder/applications/xfel/__init__.py' adding 'spotfinder/applications/xfel/correction_vector_plot.py' adding 'spotfinder/applications/xfel/cxi_phil.py' adding 'spotfinder/applications/xfel/cxi_run3.py' adding 'spotfinder/array_family/__init__.py' adding 'spotfinder/array_family/flex.py' adding 'spotfinder/command_line/__init__.py' adding 'spotfinder/command_line/find_active_area.py' adding 'spotfinder/command_line/image_viewer.py' adding 'spotfinder/command_line/mp_spotfinder_server_read_file.py' adding 'spotfinder/command_line/signal_strength.py' adding 'spotfinder/command_line/sweep_strength.py' adding 'spotfinder/command_line/thin_client.py' adding 'spotfinder/core_toolbox/__init__.py' adding 'spotfinder/core_toolbox/close_spots_detail.py' adding 'spotfinder/diffraction/__init__.py' adding 'spotfinder/diffraction/geometry.py' adding 'spotfinder/diffraction/imagefiles.py' adding 'spotfinder/dxtbx_toolbox/__init__.py' adding 'spotfinder/dxtbx_toolbox/practical_heuristics.py' adding 'spotfinder/math_support/__init__.py' adding 'spotfinder/math_support/sphere_formulae.py' adding 'spotfinder/servers/__init__.py' adding 'spotfinder/servers/adsc_client.py' adding 'spotfinder/servers/apache.py' adding 'spotfinder/servers/apache_bcsb.py' adding 'spotfinder/servers/apache_dials.py' adding 'spotfinder/servers/apache_utils.py' adding 'spotfinder/servers/bcsb_client_example.py' adding 'spotfinder/servers/general_client_example.py' adding 'spotfinder/servers/mp_spotfinder_server_is_alive.py' adding 'spotfinder/servers/mp_spotfinder_server_read_file.py' adding 'spotfinder/servers/multipart_encoder.py' adding 'spotfinder/servers/pilatus_client.py' adding 'spotfinder/servers/specific_client_example.py' adding 'spotfinder/servers/spotfinder_server_client_push.py' adding 'spotfinder/servers/spotfinder_server_read_file.py' adding 'spotfinder/servers/thin_client.py' adding 'wxtbx/__init__.py' adding 'wxtbx/adp_statistics.py' adding 'wxtbx/anomalous_scattering.py' adding 'wxtbx/app.py' adding 'wxtbx/b_plot.py' adding 'wxtbx/bitmaps.py' adding 'wxtbx/browser.py' adding 'wxtbx/checklistctrl.py' adding 'wxtbx/custom_restraints.py' adding 'wxtbx/ensemble_validation.py' adding 'wxtbx/errors.py' adding 'wxtbx/heavy_atoms.py' adding 'wxtbx/icons.py' adding 'wxtbx/info_panels.py' adding 'wxtbx/layout.py' adding 'wxtbx/listeditor.py' adding 'wxtbx/metallicbutton.py' adding 'wxtbx/misc_dialogs.py' adding 'wxtbx/monitor.py' adding 'wxtbx/mtz_dump.py' adding 'wxtbx/path_dialogs.py' adding 'wxtbx/pdb_editor.py' adding 'wxtbx/polygon.py' adding 'wxtbx/polygon_db_viewer.py' adding 'wxtbx/process_control.py' adding 'wxtbx/qstat_view.py' adding 'wxtbx/run_tests.py' adding 'wxtbx/segmentedctrl.py' adding 'wxtbx/sequence_view.py' adding 'wxtbx/symmetry_dialog.py' adding 'wxtbx/tables.py' adding 'wxtbx/utils.py' adding 'wxtbx/windows.py' adding 'wxtbx/xtriage.py' adding 'wxtbx/command_line/__init__.py' adding 'wxtbx/command_line/anomalous_differences_histogram.py' adding 'wxtbx/command_line/b_plot.py' adding 'wxtbx/command_line/inspect_r_free_flags.py' adding 'wxtbx/command_line/loggraph.py' adding 'wxtbx/command_line/pdb_editor.py' adding 'wxtbx/command_line/pdb_statistics.py' adding 'wxtbx/command_line/plan_sad_experiment.py' adding 'wxtbx/command_line/plot_anomalous_scattering.py' adding 'wxtbx/command_line/show_file_info.py' adding 'wxtbx/command_line/wxpython.py' adding 'wxtbx/command_line/xtriage.py' adding 'wxtbx/phil_controls/__init__.py' adding 'wxtbx/phil_controls/array_label.py' adding 'wxtbx/phil_controls/boolctrl.py' adding 'wxtbx/phil_controls/choice.py' adding 'wxtbx/phil_controls/choice_multi.py' adding 'wxtbx/phil_controls/floatctrl.py' adding 'wxtbx/phil_controls/floats.py' adding 'wxtbx/phil_controls/intctrl.py' adding 'wxtbx/phil_controls/ints.py' adding 'wxtbx/phil_controls/misc_ctrls.py' adding 'wxtbx/phil_controls/numbers.py' adding 'wxtbx/phil_controls/path.py' adding 'wxtbx/phil_controls/simple_dialogs.py' adding 'wxtbx/phil_controls/space_group.py' adding 'wxtbx/phil_controls/strctrl.py' adding 'wxtbx/phil_controls/strings.py' adding 'wxtbx/phil_controls/symop.py' adding 'wxtbx/phil_controls/text_base.py' adding 'wxtbx/phil_controls/tree.py' adding 'wxtbx/phil_controls/tribool.py' adding 'wxtbx/phil_controls/unit_cell.py' adding 'wxtbx/plots/__init__.py' adding 'wxtbx/plots/emringer.py' adding 'wxtbx/plots/molprobity.py' adding 'wxtbx/regression/__init__.py' adding 'wxtbx/regression/_headless_construct_cases.py' adding 'wxtbx/regression/_warnings.py' adding 'wxtbx/regression/tst_b_plot.py' adding 'wxtbx/regression/tst_headless_construct.py' adding 'wxtbx/regression/tst_imports.py' adding 'wxtbx/regression/tst_process_control.py' adding 'wxtbx/reports/__init__.py' adding 'wxtbx/reports/blast.py' adding 'wxtbx/reports/pdb_symmetry.py' adding 'xcif/__init__.py' adding 'xcif/run_tests.py' adding 'xcif/benchmarks/__init__.py' adding 'xcif/benchmarks/run_benchmarks.py' adding 'xcif/regression/__init__.py' adding 'xcif/regression/tst_api_compat.py' adding 'xcif/regression/tst_bindings.py' adding 'xcif/regression/tst_example_parse.py' adding 'xcif/regression/tst_example_tokenize.py' adding 'xcif/regression/tst_gil_release.py' adding 'xcif/regression/tst_iotbx_cif_reader_engine.py' adding 'xcif/regression/tst_iotbx_cif_reader_parity.py' adding 'xcif/regression/tst_memory.py' adding 'xcif/regression/tst_non_strict_mode.py' adding 'xcif/regression/tst_parse_verify.py' adding 'xcif/regression/tst_pdb_coordinates.py' adding 'xcif/regression/tst_pdb_sf.py' adding 'xcif/regression/tst_quoted_string_delimiter.py' adding 'xcif/regression/tst_roundtrip.py' adding 'xcif/regression/tst_semicolon_field_strict.py' adding 'xcif/regression/tst_string_interning.py' adding 'xcif/regression/tst_utf8.py' adding 'cctbx-2023.12.dist-info/METADATA' adding 'cctbx-2023.12.dist-info/WHEEL' adding 'cctbx-2023.12.dist-info/top_level.txt' adding 'cctbx-2023.12.dist-info/RECORD' removing build/bdist.linux-loongarch64/wheel Successfully built cctbx-2023.12-py3-none-any.whl I: pybuild plugin_pyproject:168: Unpacking wheel built for python3.14 with "installer" module dh_auto_build --sourcedirectory=dxtbx -- --name dxtbx pybuild --build -i python{version} -p "3.15 3.14" --name dxtbx --dir dxtbx --parallel=8 I: pybuild plugin_pyproject:142: Building wheel for python3.15 with "build" module I: pybuild base:383: python3.15 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_dxtbx * Building wheel... Successfully built dxtbx-3.30.0-py3-none-any.whl I: pybuild plugin_pyproject:168: Unpacking wheel built for python3.15 with "installer" module I: pybuild plugin_pyproject:142: Building wheel for python3.14 with "build" module I: pybuild base:383: python3.14 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_dxtbx * Building wheel... Successfully built dxtbx-3.30.0-py3-none-any.whl I: pybuild plugin_pyproject:168: Unpacking wheel built for python3.14 with "installer" module dh_auto_build -- --name cctbx -s custom --build-args="cd {build_dir}_ && ./bin/libtbx.scons -j 8" pybuild --build -i python{version} -p "3.15 3.14" --name cctbx -s custom --build-args="cd {build_dir}_ && ./bin/libtbx.scons -j 8" --parallel=8 I: pybuild base:383: cd '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build'_ && ./bin/libtbx.scons -j 8 scons: Reading SConscript files ... libtbx.scons: using flags from initial environment: CXXFLAGS = -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 CFLAGS = -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security CPPFLAGS = -Wdate-time -D_FORTIFY_SOURCE=2 LDFLAGS = -Wl,-z,relro -lhdf5_serial libtbx.scons: OpenMP is disabled. BOOST_PYTHON_LIB_VERSION: boost_python315 BOOST_NUMPY_LIB_VERSION: boost_numpy315 BOOST_VERSION: 109200 Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/exe_dev/cbflib.tst_memory' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/exe_dev/cctbx.getting_started' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/exe_dev/cctbx.sym_equiv_sites' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/exe_dev/cctbx.convert_ccp4_symop_lib' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/exe_dev/cctbx.lattice_symmetry' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/exe_dev/cctbx.find_distances' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/exe_dev/cctbx.sys_abs_equiv_space_groups' scons: done reading SConscript files. scons: Building targets ... g++ -o annlib_adaptbx/ann/ann_adaptor.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -Iannlib_adaptbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/src -Iannlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/ann/ann_adaptor.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o annlib_adaptbx/ann/boost_python/annlib_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/usr/include/python3.15 -Iannlib_adaptbx/ann/boost_python/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/ann/boost_python/src -Iannlib_adaptbx/ann/boost_python/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/ann/boost_python/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/ann/boost_python/annlib_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/blobs_cmd.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/blobs_cmd.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/asymmetric_map.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/asymmetric_map.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/skeletons.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/skeletons.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/dijkstra.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/dijkstra.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/xplor/map_reader.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/xplor/map_reader.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/xplor/map_writer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/xplor/map_writer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/cut.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/direct_space_asu/proto/cut.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/reference_table.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/direct_space_asu/proto/reference_table.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libiotbx_xplor.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libiotbx_xplor.so.0 iotbx/xplor/map_reader.o iotbx/xplor/map_writer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm Create symlinks for: 'lib/libiotbx_xplor.so.0.0.1' 'lib/libiotbx_xplor.so.0'->'lib/libiotbx_xplor.so.0.0.1' 'lib/libiotbx_xplor.so'->'lib/libiotbx_xplor.so.0.0.1' g++ -o cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/basic.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/basic.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/xray_scattering/it1992.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering/it1992.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/xray_scattering/wk1995.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering/wk1995.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/xray_scattering/n_gaussian_raw.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering/n_gaussian_raw.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/xray_scattering/n_gaussian.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering/n_gaussian.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/fp_fdp.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/fp_fdp.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_01_12.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke_tables_01_12.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_13_24.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke_tables_13_24.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_25_36.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke_tables_25_36.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_37_48.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke_tables_37_48.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_49_60.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke_tables_49_60.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_61_72.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke_tables_61_72.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_73_84.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke_tables_73_84.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_85_92.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke_tables_85_92.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/icsd_radii.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/icsd_radii.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/covalent_radii.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/covalent_radii.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/neutron.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/neutron.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/sasaki.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_01_12.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_01_12.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_13_24.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_13_24.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_25_36.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_25_36.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_37_48.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_37_48.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_49_60.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_49_60.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_61_72.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_61_72.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_73_82.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_73_82.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/tiny_pse.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/tiny_pse.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/wavelengths.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/wavelengths.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/electron_scattering/peng1996.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/electron_scattering/peng1996.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/attenuation_coefficient.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/attenuation_coefficient.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/bins.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/bins.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/index_generator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/index_generator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/index_span.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/index_span.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/match_bijvoet_mates.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match_bijvoet_mates.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/match_indices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match_indices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/match_multi_indices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match_multi_indices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/sym_equiv.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/sym_equiv.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/bricks.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/bricks.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/change_of_basis_op.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/find_affine.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/find_affine.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/group_codes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/group_codes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/hall_in.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/hall_in.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/lattice_tr.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/lattice_tr.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/lattice_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/lattice_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/miller.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/miller.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reciprocal_space_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/reciprocal_space_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reciprocal_space_ref_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/reciprocal_space_ref_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/rot_mx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/rot_mx_info.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx_info.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/row_echelon_solve.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/row_echelon_solve.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/rt_mx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rt_mx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/select_generators.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/select_generators.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/seminvariant.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/seminvariant.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/site_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/space_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/space_group_type.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group_type.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/symbols.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/symbols.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/tensor_rank_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensor_rank_2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/tr_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/tr_vec.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_vec.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/wyckoff.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/wyckoff.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reference_settings/hall_symbol_table.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/reference_settings/hall_symbol_table.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reference_settings/matrix_group_code_table.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/reference_settings/matrix_group_code_table.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reference_settings/normalizer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/reference_settings/normalizer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reference_settings/wyckoff.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/reference_settings/wyckoff.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/uctbx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx/uctbx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/spoil_optimization.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx/spoil_optimization.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/crystal_orientation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx/crystal_orientation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o omptbx/stubs.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/omptbx/stubs.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/breadth_first_search_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/breadth_first_search_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/clustering_algorithm_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/clustering_algorithm_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libomptbx.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libomptbx.so.0 omptbx/stubs.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread Create symlinks for: 'lib/libomptbx.so.0.0.1' 'lib/libomptbx.so.0'->'lib/libomptbx.so.0.0.1' 'lib/libomptbx.so'->'lib/libomptbx.so.0.0.1' g++ -o boost_adaptbx/graph/connected_component_algorithm_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/connected_component_algorithm_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/graph_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/graph_structure_comparison_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_structure_comparison_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/maximum_clique_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/maximum_clique_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libcctbx.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libcctbx.so.0 cctbx/eltbx/basic.o cctbx/eltbx/xray_scattering/it1992.o cctbx/eltbx/xray_scattering/wk1995.o cctbx/eltbx/xray_scattering/n_gaussian_raw.o cctbx/eltbx/xray_scattering/n_gaussian.o cctbx/eltbx/fp_fdp.o cctbx/eltbx/henke.o cctbx/eltbx/henke_tables_01_12.o cctbx/eltbx/henke_tables_13_24.o cctbx/eltbx/henke_tables_25_36.o cctbx/eltbx/henke_tables_37_48.o cctbx/eltbx/henke_tables_49_60.o cctbx/eltbx/henke_tables_61_72.o cctbx/eltbx/henke_tables_73_84.o cctbx/eltbx/henke_tables_85_92.o cctbx/eltbx/icsd_radii.o cctbx/eltbx/covalent_radii.o cctbx/eltbx/neutron.o cctbx/eltbx/sasaki.o cctbx/eltbx/sasaki_tables_01_12.o cctbx/eltbx/sasaki_tables_13_24.o cctbx/eltbx/sasaki_tables_25_36.o cctbx/eltbx/sasaki_tables_37_48.o cctbx/eltbx/sasaki_tables_49_60.o cctbx/eltbx/sasaki_tables_61_72.o cctbx/eltbx/sasaki_tables_73_82.o cctbx/eltbx/tiny_pse.o cctbx/eltbx/wavelengths.o cctbx/eltbx/electron_scattering/peng1996.o cctbx/eltbx/attenuation_coefficient.o cctbx/miller/asu.o cctbx/miller/bins.o cctbx/miller/index_generator.o cctbx/miller/index_span.o cctbx/miller/match_bijvoet_mates.o cctbx/miller/match_indices.o cctbx/miller/match_multi_indices.o cctbx/miller/sym_equiv.o cctbx/sgtbx/bricks.o cctbx/sgtbx/change_of_basis_op.o cctbx/sgtbx/find_affine.o cctbx/sgtbx/group_codes.o cctbx/sgtbx/hall_in.o cctbx/sgtbx/lattice_tr.o cctbx/sgtbx/lattice_symmetry.o cctbx/sgtbx/miller.o cctbx/sgtbx/reciprocal_space_asu.o cctbx/sgtbx/reciprocal_space_ref_asu.o cctbx/sgtbx/rot_mx.o cctbx/sgtbx/rot_mx_info.o cctbx/sgtbx/row_echelon_solve.o cctbx/sgtbx/rt_mx.o cctbx/sgtbx/select_generators.o cctbx/sgtbx/seminvariant.o cctbx/sgtbx/site_symmetry.o cctbx/sgtbx/space_group.o cctbx/sgtbx/space_group_type.o cctbx/sgtbx/symbols.o cctbx/sgtbx/tensor_rank_2.o cctbx/sgtbx/tr_group.o cctbx/sgtbx/tr_vec.o cctbx/sgtbx/utils.o cctbx/sgtbx/wyckoff.o cctbx/sgtbx/reference_settings/hall_symbol_table.o cctbx/sgtbx/reference_settings/matrix_group_code_table.o cctbx/sgtbx/reference_settings/normalizer.o cctbx/sgtbx/reference_settings/wyckoff.o cctbx/uctbx/uctbx.o cctbx/uctbx/spoil_optimization.o cctbx/uctbx/crystal_orientation.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm Create symlinks for: 'lib/libcctbx.so.0.0.1' 'lib/libcctbx.so.0'->'lib/libcctbx.so.0.0.1' 'lib/libcctbx.so'->'lib/libcctbx.so.0.0.1' g++ -o boost_adaptbx/graph/metric_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/metric_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/breadth_first_search_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/clustering_algorithm_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/connected_component_algorithm_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_structure_comparison_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/maximum_clique_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/metric_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/graph/min_cut_max_flow_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/min_cut_max_flow_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/utility_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/utility_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/hybrid_times_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/hybrid_times_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/meta_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/meta_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/min_cut_max_flow_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/optional_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/optional_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/utility_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/rational_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/rational_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/std_pair_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/std_pair_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/tests/boost_thread_test.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/tests/boost_thread_test.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/tests/python_streambuf_test_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/tests/python_streambuf_test_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/tests/tst_optional_copy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/tests/tst_optional_copy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/tests/tst_optional_copy -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread boost_adaptbx/tests/tst_optional_copy.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o boost_adaptbx/tuple_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/tuple_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/boost_python/cbflib_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DSWIG_PYTHON_STRICT_BYTE_CHAR -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx/detectors/boost_python/cbflib_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/buffer_based_service.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx/detectors/buffer_based_service.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/cbf_adaptor.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx/detectors/cbf_adaptor.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/cbf_byte_offset_optimized.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx/detectors/cbf_byte_offset_optimized.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/mar_adaptor.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx/detectors/mar_adaptor.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/tst_memory.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCBF_NO_REGEX -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx/detectors/tst_memory.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ gcc -o ccp4io_adaptbx/fortran_call_stubs.o -c -std=gnu17 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ccp4io -I. -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ccp4io_adaptbx/fortran_call_stubs.c gcc -o ccp4io_adaptbx/printf_wrappers.o -c -std=gnu17 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ccp4io -I. -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ccp4io_adaptbx/printf_wrappers.c g++ -o cctbx/adp_restraints/adp_restraints_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adp_restraints/adp_restraints_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/adp_restraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adp_restraints/adp_restraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/adp_similarity_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adp_restraints/adp_similarity_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/aniso_restraints_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adp_restraints/aniso_restraints_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/fixed_u_eq_adp_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adp_restraints/fixed_u_eq_adp_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/isotropic_adp_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adp_restraints/isotropic_adp_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libcctbx_sgtbx_asu.so.0.0.1 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread -shared -Wl,-z,relro -lhdf5_serial -Wl,-soname=libcctbx_sgtbx_asu.so.0 cctbx/sgtbx/direct_space_asu/proto/cut.o cctbx/sgtbx/direct_space_asu/proto/reference_table.o cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lm Create symlinks for: 'lib/libcctbx_sgtbx_asu.so.0.0.1' 'lib/libcctbx_sgtbx_asu.so.0'->'lib/libcctbx_sgtbx_asu.so.0.0.1' 'lib/libcctbx_sgtbx_asu.so'->'lib/libcctbx_sgtbx_asu.so.0.0.1' g++ -o lib/libasymmetric_map.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libasymmetric_map.so.0 cctbx/maptbx/asymmetric_map.o cctbx/maptbx/skeletons.o cctbx/maptbx/dijkstra.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lm Create symlinks for: 'lib/libasymmetric_map.so.0.0.1' 'lib/libasymmetric_map.so.0'->'lib/libasymmetric_map.so.0.0.1' 'lib/libasymmetric_map.so'->'lib/libasymmetric_map.so.0.0.1' g++ -o bin/cctbx_blobs -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/maptbx/blobs_cmd.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lasymmetric_map -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lm g++ -o cctbx/adp_restraints/rigid_bond_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adp_restraints/rigid_bond_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/rigu_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adp_restraints/rigu_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adptbx/boost_python/adptbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adptbx/boost_python/adptbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adptbx/boost_python/anharmonic_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adptbx/boost_python/anharmonic_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adptbx/boost_python/hirshfeld.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adptbx/boost_python/hirshfeld.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/array_family/boost_python/flex_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/array_family/boost_python/flex_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/array_family/boost_python/flex_hendrickson_lattman.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/array_family/boost_python/flex_hendrickson_lattman.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/array_family/boost_python/flex_miller_index.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/array_family/boost_python/flex_miller_index.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/array_family/boost_python/flex_xray_scatterer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/array_family/boost_python/flex_xray_scatterer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/boost_python/emma_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/boost_python/emma_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/boost_python/french_wilson_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/boost_python/french_wilson_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/boost_python/orientation_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/boost_python/orientation_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/boost_python/statistics_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/boost_python/statistics_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/covariance/boost_python/covariance_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/covariance/boost_python/covariance_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/asu_clusters_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/asu_clusters_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/close_packing_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/close_packing_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/coordination_sequences_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/coordination_sequences_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/crystal_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/crystal_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/direct_space_asu_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/incremental_pairs_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/incremental_pairs_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/neighbors_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/neighbors_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/pair_tables_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/pair_tables_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/site_cluster_analysis_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/site_cluster_analysis_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/symmetry_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/symmetry_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/dmtbx/boost_python/dmtbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/dmtbx/boost_python/dmtbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/dmtbx/boost_python/triplet_generator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/dmtbx/boost_python/triplet_generator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/dmtbx/boost_python/triplet_phase_relation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/dmtbx/boost_python/triplet_phase_relation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/attenuation_coefficient_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/attenuation_coefficient_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/chemical_elements_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/chemical_elements_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/covalent_radii_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/covalent_radii_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/fp_fdp_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/fp_fdp_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/henke_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/henke_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/icsd_radii_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/icsd_radii_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/neutron_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/neutron_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/sasaki_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/sasaki_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/tiny_pse_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/tiny_pse_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/wavelengths_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/wavelengths_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/xray_scattering_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/xray_scattering_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/convert_ccp4_symop_lib.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples/convert_ccp4_symop_lib.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/find_distances.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples/find_distances.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/getting_started.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples/getting_started.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/lattice_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples/lattice_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/sym_equiv_sites.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples/sym_equiv_sites.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/sys_abs_equiv_space_groups.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples/sys_abs_equiv_space_groups.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry/boost_python/geometry_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry/boost_python/geometry_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/angle_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/angle_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/bond_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/bond_similarity_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/restraints.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/angle.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/angle_bpl.cpp:13: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_misc.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_bpl.cpp:14: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::angle_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/angle_bpl.cpp:75:65: required from here 75 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 76 | "shared_angle_proxy") | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/geometry_restraints/bond_sorted_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_sorted_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_bpl.cpp:10: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::map; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_bpl.cpp:129:23: required from here 129 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 130 | "bond_params_table") | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::bond_simple_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_bpl.cpp:232:25: required from here 232 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 233 | "shared_bond_simple_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::bond_asu_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_bpl.cpp:340:25: required from here 340 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 341 | "shared_bond_asu_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/geometry_restraints/chirality_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/chirality_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/restraints.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_similarity.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp:12: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i, scitbx::af::trivial_accessor>&, const cctbx::geometry_restraints::bond_similarity_proxy&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_similarity.h:84:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 84 | for(int i=0;i, scitbx::af::trivial_accessor>&, const cctbx::geometry_restraints::bond_similarity_proxy&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_similarity.h:108:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 108 | for(int i=0;i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::bond_similarity_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp:55:44: required from here 54 | scitbx::af::boost_python::shared_wrapper< | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | bond_similarity_proxy, rir>::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 56 | "shared_bond_similarity_proxy"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared, 2> >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared, 2> >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny, 2>; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp:79:54: required from here 78 | scitbx::af::boost_python::shared_wrapper< | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 | af::tiny, 2>, rbv>::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 80 | "sites_array"); | ~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_sorted.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_sorted_bpl.cpp:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu.h: In instantiation of ‘int cctbx::crystal::direct_space_asu::asu_mappings::find_i_sym(unsigned int, const cctbx::sgtbx::rt_mx&) const [with FloatType = double; IntShiftType = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/pair_tables.h:643:46: required from ‘bool cctbx::crystal::pair_asu_table::process_pair(unsigned int, unsigned int, const cctbx::sgtbx::rt_mx&) [with FloatType = double; IntShiftType = int]’ 643 | int j_sym = asu_mappings_->find_i_sym(j_seq, rt_mx_j); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/pair_tables.h:543:35: required from ‘cctbx::crystal::pair_asu_table& cctbx::crystal::pair_asu_table::add_pair(const scitbx::af::tiny&) [with FloatType = double; IntShiftType = int]’ 543 | bool is_new = process_pair(i_seqs[0], i_seqs[1], rt_mx_ji); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_sorted.h:16:30: required from here 16 | pair_asu_table.add_pair(bond_simple_proxies[i].i_seqs); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu.h:859:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 859 | for(int i_sym=0; i_sym, std::allocator > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 869 | for(int i_sym=0; i_sym::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/chirality_bpl.cpp:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::chirality_proxy; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/chirality_bpl.cpp:75:60: required from here 75 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 76 | "shared_chirality_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/geometry_restraints/nonbonded_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/restraints.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/dihedral.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp:12: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /usr/include/boost/python/tuple.hpp:10, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/shared_wrapper_pickle.hpp:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/angle_bpl.cpp:2: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp:13: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/proxy_select.h: In instantiation of ‘scitbx::af::shared cctbx::geometry_restraints::shared_proxy_remove(const scitbx::af::const_ref&, const scitbx::af::const_ref&) [with ProxyType = dihedral_proxy]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp:110:17: required from here 110 | shared_proxy_remove, ( | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/proxy_select.h:187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 187 | if (match_ctr != i_seqs.size()) { | ~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::dihedral_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp:84:65: required from here 84 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 85 | "shared_dihedral_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp:10: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::nonbonded_simple_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp:92:25: required from here 92 | shared_w_t::wrap("shared_nonbonded_simple_proxy") | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::nonbonded_asu_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp:125:25: required from here 125 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 126 | "shared_nonbonded_asu_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/geometry_restraints/nonbonded_sorted_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_sorted_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/parallelity_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/parallelity_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/planarity_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/planarity_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_sorted.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_sorted_bpl.cpp:8: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::parallelity_proxy; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/parallelity_bpl.cpp:82:60: required from here 82 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 83 | "shared_parallelity_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/neighbors_fast.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/pair_tables.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_sorted.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicles.h: In instantiation of ‘scitbx::vec3 scitbx::cubicles::i_cubicle(const SiteType&) const [with SiteType = cctbx::cartesian; CubicleContentType = std::vector; FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/neighbors_fast.h:77:34: required from ‘cctbx::crystal::neighbors::fast_pair_generator::fast_pair_generator(const boost::shared_ptr >&, const FloatType&, bool, const FloatType&, const FloatType&) [with FloatType = double; IntShiftType = int]’ 77 | cubicles_.i_cubicle(mappings[mi.i_seq][mi.i_sym].mapped_site())); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_sorted.h:80:27: required from here 80 | min_cubicle_edge); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicles.h:176:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 176 | else if (j >= ref.accessor()[i]) j = ref.accessor()[i]-1; | ~~^~~~~~~~~~~~~~~~~~ g++ -o cctbx/maptbx/asymmetric_map_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/asymmetric_map_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/planarity_bpl.cpp:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::planarity_proxy; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/planarity_bpl.cpp:62:23: required from here 62 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 63 | "shared_planarity_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/maptbx/bcr/bcr_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/bcr/bcr_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/coordinate_transformers.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/coordinate_transformers.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/grid_indices_around_sites.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/grid_indices_around_sites.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/grid_tags.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/grid_tags.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/gridding.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/gridding.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/maptbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/maptbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/misc.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/misc.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/peak_search.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/peak_search.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/pymol_interface.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/pymol_interface.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/statistics.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/statistics.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/structure_factors.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/structure_factors.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/masks/boost_python/masks_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/masks/boost_python/masks_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/math/boost_python/math_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/math/boost_python/math_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/math/time_trigonometry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/math/time_trigonometry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/merging/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/merging/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/math/time_trigonometry -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/math/time_trigonometry.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_timer -lm g++ -o cctbx/miller/boost_python/amplitude_normalisation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/amplitude_normalisation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/bins.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/bins.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/change_basis.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/change_basis.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/expand_to_p1.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/expand_to_p1.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/f_calc_map.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/f_calc_map.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/index_generator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/index_generator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/index_span.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/index_span.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/lookup_utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/lookup_utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/match_bijvoet_mates.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/match_bijvoet_mates.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/match_indices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/match_indices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/match_multi_indices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/match_multi_indices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/merge_equivalents.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/merge_equivalents.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/miller_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/miller_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/phase_integrator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/phase_integrator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/phase_transfer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/phase_transfer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/randomize_amplitude_and_phase.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/randomize_amplitude_and_phase.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/slices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/slices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/sym_equiv.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/sym_equiv.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/multipolar/aspherical_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/multipolar/aspherical_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/brick.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/brick.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/change_of_basis.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/change_of_basis.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/find_affine.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/find_affine.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/lattice_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/lattice_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/phase_info.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/phase_info.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/reciprocal_space_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/reciprocal_space_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/rot_mx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/rot_mx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/rt_mx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/rt_mx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/search_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/search_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/select_generators.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/select_generators.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/seminvariant.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/seminvariant.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/sgtbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/sgtbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/site_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/site_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/space_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/space_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/space_group_type.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/space_group_type.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/sym_equiv_sites.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/sym_equiv_sites.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/symbols.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/symbols.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/tensor_rank_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/tensor_rank_2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/tensors.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/tensors.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/tr_vec.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/tr_vec.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/wyckoff.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/wyckoff.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/asu_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/direct_space_asu/proto/asu_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/tst_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/direct_space_asu/proto/tst_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/symmetry_search/boost_python/symmetry_search_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/symmetry_search/boost_python/symmetry_search_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/translation_search/boost_python/fast_nv1995.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/translation_search/boost_python/fast_nv1995.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/translation_search/boost_python/fast_terms.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/translation_search/boost_python/fast_terms.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/translation_search/boost_python/symmetry_flags.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/translation_search/boost_python/symmetry_flags.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/tst_asu -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/sgtbx/direct_space_asu/proto/tst_asu.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lm g++ -o cctbx/translation_search/boost_python/translation_search_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/translation_search/boost_python/translation_search_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/boost_python/fast_minimum_reduction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx/boost_python/fast_minimum_reduction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/boost_python/niggli_reduction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx/boost_python/niggli_reduction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/boost_python/uctbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx/boost_python/uctbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/determine_unit_cell/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_SINGLEFILE_NCDIST -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx/determine_unit_cell/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/conversions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/conversions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/curvatures_simple.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/curvatures_simple.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/each_hkl_gradients_direct.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/each_hkl_gradients_direct.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/extinction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/extinction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/f_model_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/f_model_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/fast_gradients.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/fast_gradients.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/curvatures_simple.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/curvatures_simple.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/gradient_flags.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/gradient_flags.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match_indices.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/lookup_utils.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/f_model.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/f_model_bpl.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:16:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 16 | struct additive_sigma : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/sstream:42, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/f_model.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:18:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 18 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:31:27: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct average : std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/sampling_base.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/fast_gradients.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/fast_gradients.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/gradients_direct.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/gradients_direct.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/f_model.h: In instantiation of ‘cctbx::xray::f_model_core_data::f_model_core_data cctbx::xray::f_model_core_data::f_model_core_data::select(const scitbx::af::const_ref&) const [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/f_model_bpl.cpp:174:32: required from here 174 | .def("select", &w_t::select) | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/f_model.h:732:38: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 732 | CCTBX_ASSERT( iselection[ii]::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/grouped_data.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/grouped_data.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/gradients_direct.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/gradients_direct.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/parameter_map.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/parameter_map.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/sampled_model_density.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/sampled_model_density.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match_indices.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/lookup_utils.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:14, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/grouped_data.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:16:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 16 | struct additive_sigma : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/sstream:42, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:18:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 18 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:31:27: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct average : std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:33:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h: In instantiation of ‘FloatType cctbx::xray::grouped_data::merger::bic() [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/grouped_data.cpp:68:29: required from here 68 | .def("bic", &w_t::bic) | ^~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:257:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 257 | for (long int ii=0;ii::r_abs() [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/grouped_data.cpp:69:31: required from here 69 | .def("r_abs", &w_t::r_abs) | ^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:271:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 271 | for (long int ii=0;ii cctbx::xray::grouped_data::merger::combine_obs(long int) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:258:24: required from ‘FloatType cctbx::xray::grouped_data::merger::bic() [with FloatType = double]’ 258 | tmp_result = combine_obs( ii ); | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/grouped_data.cpp:68:29: required from here 68 | .def("bic", &w_t::bic) | ^~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:213:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 213 | for (int ii=1;ii::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 231 | for (int ii=1;ii::unmerged_data(scitbx::af::const_ref >, scitbx::af::const_ref >, const cctbx::sgtbx::space_group&, const bool&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value >&>; A2 = boost::python::objects::reference_to_value; A3 = boost::python::objects::reference_to_value; Value = cctbx::xray::grouped_data::unmerged_data; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<4>::apply::execute(PyObject*, t0, t1, t2, t3) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const scitbx::af::const_ref >&; t2 = const cctbx::sgtbx::space_group&; t3 = const bool&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; Arity = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; W = cctbx::xray::grouped_data::unmerged_data; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/grouped_data.cpp:27:15: required from here 26 | class_("unmerged_data", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 | .def(init< scitbx::af::const_ref< cctbx::miller::index<> > const&, | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 | scitbx::af::const_ref< cctbx::miller::index<> > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 | sgtbx::space_group const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 | bool const& | ~~~~~~~~~~~ 31 | > | ~ 32 | (( arg("hkl_obs"), | ~~~~~~~~~~~~~~~~~~ 33 | arg("asu_hkl"), | ~~~~~~~~~~~~~~~ 34 | arg("space_group"), | ~~~~~~~~~~~~~~~~~~~ 35 | arg("anomalous_flag") ))) | ~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:54:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 54 | for (int ii=0;ii >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 61 | for (int ii=0; ii >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | CCTBX_ASSERT( tmp_index < asu_hkl.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:67:11: note: in expansion of macro ‘CCTBX_ASSERT’ 67 | CCTBX_ASSERT( tmp_index < asu_hkl.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h: In instantiation of ‘cctbx::xray::grouped_data::merger::merger(scitbx::af::const_ref >, scitbx::af::const_ref, scitbx::af::const_ref, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value&>; A2 = boost::python::objects::reference_to_value&>; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value; A5 = boost::python::objects::reference_to_value; Value = cctbx::xray::grouped_data::merger; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<6>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const scitbx::af::const_ref&; t2 = const scitbx::af::const_ref&; t3 = const cctbx::sgtbx::space_group&; t4 = const bool&; t5 = const cctbx::uctbx::unit_cell&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; Arity = boost::mpl::size >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; W = cctbx::xray::grouped_data::merger; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/grouped_data.cpp:54:15: required from here 53 | class_("merger", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 | .def(init< scitbx::af::const_ref< cctbx::miller::index<> > const&, | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | scitbx::af::const_ref< double > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | scitbx::af::const_ref< double > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | sgtbx::space_group const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | bool const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 | cctbx::uctbx::unit_cell const& | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 | > | ~ 61 | (( arg("hkl_obs"), | ~~~~~~~~~~~~~~~~~~ 62 | arg("i_obs"), | ~~~~~~~~~~~~~ 63 | arg("s_obs"), | ~~~~~~~~~~~~~ 64 | arg("space_group"), | ~~~~~~~~~~~~~~~~~~~ 65 | arg("anomalous_flag"), | ~~~~~~~~~~~~~~~~~~~~~~ 66 | arg("unit_cell") | ~~~~~~~~~~~~~~~~ 67 | ))) | ~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:151:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 151 | for (int ii=0;ii::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 167 | for (int ii=0; ii::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/sampling_base.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/sampling_base.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/parameter_map.cpp:10: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/sampling_base.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/sampled_model_density.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/sampled_model_density.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::init_scatterer_part(const scitbx::af::const_ref&) [with XRayScattererType = cctbx::xray::scatterer<>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/parameter_map.h:54:7: required from ‘cctbx::xray::parameter_map::parameter_map(const scitbx::af::const_ref&) [with XRayScattererType = cctbx::xray::scatterer<>]’ 54 | init_scatterer_part(scatterers); | ^~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0) [with A0 = boost::python::objects::reference_to_value, scitbx::af::trivial_accessor>&>; Value = cctbx::xray::parameter_map >; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<1>::apply::execute(PyObject*, t0) [with Holder = boost::python::objects::value_holder > >; ArgList = boost::mpl::vector1, scitbx::af::trivial_accessor>&>; PyObject = _object; t0 = const scitbx::af::const_ref, scitbx::af::trivial_accessor>&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector1, scitbx::af::trivial_accessor>&>; Arity = boost::mpl::size, scitbx::af::trivial_accessor>&> >; Holder = boost::python::objects::value_holder > >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedT = boost::python::init, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >; classT = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedVisitor = boost::python::init, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>; W = cctbx::xray::parameter_map >; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/parameter_map.cpp:46:11: required from ‘static void cctbx::xray::boost_python::parameter_map_wrapper::wrap(const char*) [with XRayScattererType = cctbx::xray::scatterer<>]’ 45 | class_("parameter_map", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 | .def(init const &>(( | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 | arg("scatterers")))) | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/parameter_map.cpp:60:50: required from here 60 | parameter_map_wrapper >::wrap("parameter_map"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/parameter_map.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref, scitbx::af::trivial_accessor>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 61 | for(int i_sc=0; i_sc < scatterers.size(); ++i_sc) { | ~~~~~^~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/scatterer_flags.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scatterer_flags.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/sampling_base.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/sampling_base.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer_utils.h: In instantiation of ‘static void cctbx::xray::inelastic_form_factors::set(const scitbx::af::ref&, float, bool) [with ScattererType = cctbx::xray::scatterer<>; TableType = cctbx::eltbx::henke::table]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scatterer.cpp:349:54: required from here 349 | inelastic_form_factors::set, | ^~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer_utils.h:426:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 426 | for (int i=0; i < scatterers.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer_utils.h: In instantiation of ‘static void cctbx::xray::inelastic_form_factors::set(const scitbx::af::ref&, float, bool) [with ScattererType = cctbx::xray::scatterer<>; TableType = cctbx::eltbx::sasaki::table]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scatterer.cpp:353:55: required from here 353 | inelastic_form_factors::set, | ^~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer_utils.h:426:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 426 | for (int i=0; i < scatterers.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/sigmaa.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/sigmaa.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/structure_factors_direct.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/structure_factors_direct.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/structure_factors_simple.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/structure_factors_simple.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scatterer_flags.cpp:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensor_rank_2.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::xray::scatterer_flags; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scatterer_flags.cpp:142:44: required from here 140 | class_ wrapper = scitbx::af::boost_python::shared_wrapper< | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 | scatterer_flags, | ~~~~~~~~~~~~~~~~ 142 | return_internal_reference<> >::wrap("shared_scatterer_flags"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 49 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/16/memory:80, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/misc.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer_flags.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:4: /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp: In static member function ‘static std::auto_ptr cctbx::xray::boost_python::{anonymous}::scattering_type_registry_wrappers::constructor_for_pickle(const boost::python::dict&, const boost::python::list&, const cctbx::xray::scattering_type_registry::unique_counts_t&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp:55:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 55 | std::auto_ptr self(new w_t); | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/structure_factors_direct.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/structure_factors_direct.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/targets.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/targets.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/structure_factors_simple.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/structure_factors_simple.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/twin_components.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_components.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/twin_targets.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_wrapper.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_components.cpp:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:300:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_variable_capacity::tuple_mapping_variable_capacity() [with ContainerType = scitbx::af::shared*>]’ 300 | tuple_mapping< | ^~~~~~~~~~~~~~ 301 | ContainerType, | ~~~~~~~~~~~~~~ 302 | variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_components.cpp:91:77: required from here 91 | tuple_mapping_variable_capacity *> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:300:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_variable_capacity::tuple_mapping_variable_capacity() [with ContainerType = scitbx::af::shared*>]’ 300 | tuple_mapping< | ^~~~~~~~~~~~~~ 301 | ContainerType, | ~~~~~~~~~~~~~~ 302 | variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_components.cpp:92:78: required from here 92 | tuple_mapping_variable_capacity *> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/xray/boost_python/xray_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/xray_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/observations/boost_python/observations.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/observations/boost_python/observations.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/observations/boost_python/observations_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/observations/boost_python/observations_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/targets/shelxl_wght_ls_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/targets/shelxl_wght_ls_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match_indices.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/lookup_utils.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:14, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:16:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 16 | struct additive_sigma : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/sstream:42, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:18:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 18 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:31:27: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct average : std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:33:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘scitbx::af::shared cctbx::xray::twin_targets::twin_completion::get_free_model_selection(scitbx::af::const_ref >, const scitbx::af::const_ref&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:42:50: required from here 42 | .def("get_free_model_selection", &w_t::get_free_model_selection) | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:128:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 128 | CCTBX_ASSERT( index < flags.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:128:11: note: in expansion of macro ‘CCTBX_ASSERT’ 128 | CCTBX_ASSERT( index < flags.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_intensity_abs(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:182:39: required from here 182 | .def("r_intensity_abs", &w_t::r_intensity_abs, | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:559:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 559 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:559:6: note: in expansion of macro ‘CCTBX_ASSERT’ 559 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:560:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 560 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:560:6: note: in expansion of macro ‘CCTBX_ASSERT’ 560 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:561:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 561 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:561:6: note: in expansion of macro ‘CCTBX_ASSERT’ 561 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_intensity_sq(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:189:38: required from here 189 | .def("r_intensity_sq", &w_t::r_intensity_sq, | ^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:604:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 604 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:604:6: note: in expansion of macro ‘CCTBX_ASSERT’ 604 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:605:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 605 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:605:6: note: in expansion of macro ‘CCTBX_ASSERT’ 605 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:606:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 606 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:606:6: note: in expansion of macro ‘CCTBX_ASSERT’ 606 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_amplitude_abs(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:196:39: required from here 196 | .def("r_amplitude_abs", &w_t::r_amplitude_abs, | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:649:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 649 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:649:6: note: in expansion of macro ‘CCTBX_ASSERT’ 649 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:650:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 650 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:650:6: note: in expansion of macro ‘CCTBX_ASSERT’ 650 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:651:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 651 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:651:6: note: in expansion of macro ‘CCTBX_ASSERT’ 651 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_amplitude_sq(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:203:38: required from here 203 | .def("r_amplitude_sq", &w_t::r_amplitude_sq, | ^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:697:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 697 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:697:6: note: in expansion of macro ‘CCTBX_ASSERT’ 697 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:698:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 698 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:698:6: note: in expansion of macro ‘CCTBX_ASSERT’ 698 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:699:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 699 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:699:6: note: in expansion of macro ‘CCTBX_ASSERT’ 699 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘scitbx::af::tiny, 2> cctbx::xray::twin_targets::hemihedral_detwinner::detwin_with_model_data(const scitbx::af::const_ref&, const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const FloatType&) const [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:263:45: required from here 263 | result = self.detwin_with_model_data(i_obs,sig_obs,f_model,twin_fraction); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:997:45: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 997 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:997:19: note: in expansion of macro ‘CCTBX_ASSERT’ 997 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:1003:47: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 1003 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:1003:19: note: in expansion of macro ‘CCTBX_ASSERT’ 1003 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:1006:41: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 1006 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:1006:13: note: in expansion of macro ‘CCTBX_ASSERT’ 1006 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:1010:47: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 1010 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:1010:19: note: in expansion of macro ‘CCTBX_ASSERT’ 1010 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘scitbx::af::tiny, 2> cctbx::xray::twin_targets::hemihedral_detwinner::detwin_with_model_data(const scitbx::af::const_ref&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const FloatType&) const [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:275:45: required from here 275 | result = self.detwin_with_model_data(i_obs,sig_obs,f_model,twin_fraction); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:936:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 936 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:936:17: note: in expansion of macro ‘CCTBX_ASSERT’ 936 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:942:47: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 942 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:942:19: note: in expansion of macro ‘CCTBX_ASSERT’ 942 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:945:45: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 945 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:945:17: note: in expansion of macro ‘CCTBX_ASSERT’ 945 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:948:45: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 948 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:948:17: note: in expansion of macro ‘CCTBX_ASSERT’ 948 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ g++ -o chiltbx/handle_test.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/chiltbx/handle_test.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cma_es/cma/cmaes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cma_es/cma/cmaes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘cctbx::xray::twin_targets::hemihedral_r_values::hemihedral_r_values(const scitbx::af::const_ref >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value >&>; A2 = boost::python::objects::reference_to_value; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value&>; Value = cctbx::xray::twin_targets::hemihedral_r_values; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<5>::apply::execute(PyObject*, t0, t1, t2, t3, t4) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const scitbx::af::const_ref >&; t2 = const cctbx::sgtbx::space_group&; t3 = const bool&; t4 = const scitbx::mat3&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; Arity = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; W = cctbx::xray::twin_targets::hemihedral_r_values; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:169:13: required from here 168 | class_("hemihedral_r_values", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 | .def(init< | ~~~~^~~~~~ 170 | scitbx::af::const_ref< cctbx::miller::index<> > const&, // 1 obs indices | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | scitbx::af::const_ref< cctbx::miller::index<> > const&, // 2 calc indices | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | sgtbx::space_group const&, // 3 space group | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 | bool const&, // 4 anomalous flag | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 | scitbx::mat3 const& // 5 twin law | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 | > | ~ 176 | ((arg("hkl_obs"), | ~~~~~~~~~~~~~~~~~ 177 | arg("hkl_calc"), | ~~~~~~~~~~~~~~~~ 178 | arg("space_group"), | ~~~~~~~~~~~~~~~~~~~ 179 | arg("anomalous_flag"), | ~~~~~~~~~~~~~~~~~~~~~~ 180 | arg("twin_law") | ~~~~~~~~~~~~~~~ 181 | ))) | ~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:544:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 544 | for (long ii=0;ii::refine(const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/quadrature.h:523:14: required from ‘scitbx::math::quadrature::gauss_legendre_engine::gauss_legendre_engine(const int&) [with FloatType = double]’ 523 | x = refine( start_guess ); | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:1070:68: required from ‘cctbx::xray::twin_targets::single_twin_likelihood::single_twin_likelihood(const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const bool&, const bool&, const FloatType&, const FloatType&, const FloatType&, const int&) [with FloatType = double]’ 1070 | scitbx::math::quadrature::gauss_legendre_engine tmp_gle(n_quad_); | ^~~~~~~ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5, A6, A7, A8, A9, A10, A11, A12, A13) [with A0 = boost::python::objects::reference_to_value; A1 = boost::python::objects::reference_to_value; A2 = boost::python::objects::reference_to_value; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value; A5 = boost::python::objects::reference_to_value; A6 = boost::python::objects::reference_to_value; A7 = boost::python::objects::reference_to_value; A8 = boost::python::objects::reference_to_value; A9 = boost::python::objects::reference_to_value; A10 = boost::python::objects::reference_to_value; A11 = boost::python::objects::reference_to_value; A12 = boost::python::objects::reference_to_value; A13 = boost::python::objects::reference_to_value; Value = cctbx::xray::twin_targets::single_twin_likelihood; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<14>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5, t6, t7, t8, t9, t10, t11, t12, t13) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector14; PyObject = _object; t0 = const double&; t1 = const double&; t2 = const double&; t3 = const double&; t4 = const double&; t5 = const double&; t6 = const double&; t7 = const double&; t8 = const bool&; t9 = const bool&; t10 = const double&; t11 = const double&; t12 = const double&; t13 = const int&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector14; NArgs = boost::mpl::size >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init; W = cctbx::xray::twin_targets::single_twin_likelihood; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:343:14: required from here 342 | class_("single_twin_likelihood", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 | .def(init< | ~~~~^~~~~~ 344 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 | bool const&, bool const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 | double const&, int const& | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 | > | ~ 352 | ((arg("i_obs1"), arg("s_obs1"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | arg("i_obs2"), arg("s_obs2"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 | arg("f_calc1"), arg("f_calc2"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 | arg("eps1"), arg("eps2"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 | arg("centric1"),arg("centric2"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 | arg("alpha"), arg("beta"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 | arg("twin_fraction"), arg("n_quad") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 | )) | ~~ 360 | ) | ~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/quadrature.h:546:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 546 | for (int ii=0;ii >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/variant.hpp:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:8: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/boost_python/compression.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.15 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.15 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc: In function ‘unsigned int dxtbx::boost_python::cbf_decompress(const char*, std::size_t, int*, std::size_t)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:124:50: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 124 | while ((j < packed_sz) && ((values - original) < values_sz)) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc: In function ‘void dxtbx::boost_python::rod_TY5_TY6_decompress(int*, const char*, const char*, int, int, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:207:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 207 | for (size_t iy = 0; iy < slow; iy++) { | ~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:228:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 228 | for (int k = 0; k < nblock; k++) { | ~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:254:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 254 | for (int j = 0; j < nbit; j++) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:261:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 261 | for (int j = 0; j < BLOCKSIZE; j++) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:282:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 282 | for (int i = 0; i < nrest; i++) { | ~~^~~~~~~ g++ -o dxtbx/src/dxtbx/boost_python/flumpy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.15 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/boost_python/imageset_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.15 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp: In function ‘scitbx::af::flex_int dxtbx::boost_python::uncompress(const boost::python::api::object&, const int&, const int&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:183:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 183 | DXTBX_ASSERT(nn == (slow * fast)); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:183:5: note: in expansion of macro ‘DXTBX_ASSERT’ 183 | DXTBX_ASSERT(nn == (slow * fast)); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp: In function ‘void dxtbx::boost_python::radial_average(scitbx::af::versa >&, scitbx::af::versa >&, const scitbx::vec2&, scitbx::af::shared, scitbx::af::shared, scitbx::af::shared, double, double, const scitbx::vec2&, const scitbx::vec2&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:218:43: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 218 | for (std::size_t y = upper_left[1]; y < lower_right[1]; y++) { /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:219:45: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 219 | for (std::size_t x = upper_left[0]; x < lower_right[0]; x++) { g++ -o dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.15 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/format/boost_python/image_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.15 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/format/boost_python/nexus_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.15 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/nexus_ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = bool; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:247:31: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 247 | return get_buffer_specific(obj); | ~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = long unsigned int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:247:31: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 247 | return get_buffer_specific(obj); | ~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.cpp:10:1: warning: ‘typedef’ was ignored in this declaration 10 | typedef struct cbf_handle_struct; | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = unsigned char; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = short unsigned int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:24, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = unsigned int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = long int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:25: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = signed char; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = short int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = float; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = double; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:88:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 88 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:90:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 90 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = int; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:88:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 88 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:90:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 90 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:138:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 138 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:140:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 140 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:166:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 166 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:168:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 168 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = long unsigned int; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:191:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 191 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:193:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 193 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:215:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 215 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:217:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 217 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = int; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:113:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 113 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:115:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 115 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:27: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ g++ -o dxtbx/src/dxtbx/masking/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.15 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/boost_python/ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘std::shared_ptr > dxtbx::format::boost_python::make_image_from_tuple(boost::python::tuple) [with T = bool]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:125:40: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = bool]’ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:141:24: required from here 141 | image_wrapper("ImageBool"); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:51:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 51 | for (std::size_t i = 0; i < boost::python::len(data); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘std::shared_ptr > dxtbx::format::boost_python::make_image_from_tuple(boost::python::tuple) [with T = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:125:40: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = int]’ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:142:23: required from here 142 | image_wrapper("ImageInt"); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:51:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 51 | for (std::size_t i = 0; i < boost::python::len(data); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘std::shared_ptr > dxtbx::format::boost_python::make_image_from_tuple(boost::python::tuple) [with T = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:125:40: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = double]’ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:143:26: required from here 143 | image_wrapper("ImageDouble"); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:51:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 51 | for (std::size_t i = 0; i < boost::python::len(data); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘static void dxtbx::format::boost_python::ImagePickleSuite::setstate(dxtbx::format::Image&, boost::python::tuple) [with T = bool]’: /usr/include/boost/python/class.hpp:345:9: required from ‘boost::python::class_::self& boost::python::class_::def_pickle(const PickleSuiteType&) [with PickleSuiteType = dxtbx::format::boost_python::ImagePickleSuite; W = dxtbx::format::Image; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 345 | &PickleSuiteType::setstate, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:134:18: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = bool]’ 122 | class_(name) | ~~~~~~~~~~~~~~~~~~~~~~~~ 123 | .def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~ 124 | .def("__init__", make_constructor(&make_image_from_flex)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 | .def("__getitem__", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 | .def("tile", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | .def("tile_names", &image_type::tile_names) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 | .def("n_tiles", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("empty", &image_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("append", &image_type::push_back) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("__len__", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | .def("__iter__", range(&image_type::begin, &image_type::end)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def_pickle(ImagePickleSuite()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:141:24: required from here 141 | image_wrapper("ImageBool"); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:98:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 98 | for (std::size_t i = 0; i < boost::python::len(tile_list); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘static void dxtbx::format::boost_python::ImagePickleSuite::setstate(dxtbx::format::Image&, boost::python::tuple) [with T = int]’: /usr/include/boost/python/class.hpp:345:9: required from ‘boost::python::class_::self& boost::python::class_::def_pickle(const PickleSuiteType&) [with PickleSuiteType = dxtbx::format::boost_python::ImagePickleSuite; W = dxtbx::format::Image; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 345 | &PickleSuiteType::setstate, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:134:18: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = int]’ 122 | class_(name) | ~~~~~~~~~~~~~~~~~~~~~~~~ 123 | .def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~ 124 | .def("__init__", make_constructor(&make_image_from_flex)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 | .def("__getitem__", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 | .def("tile", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | .def("tile_names", &image_type::tile_names) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 | .def("n_tiles", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("empty", &image_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("append", &image_type::push_back) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("__len__", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | .def("__iter__", range(&image_type::begin, &image_type::end)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def_pickle(ImagePickleSuite()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:142:23: required from here 142 | image_wrapper("ImageInt"); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:98:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 98 | for (std::size_t i = 0; i < boost::python::len(tile_list); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘static void dxtbx::format::boost_python::ImagePickleSuite::setstate(dxtbx::format::Image&, boost::python::tuple) [with T = double]’: /usr/include/boost/python/class.hpp:345:9: required from ‘boost::python::class_::self& boost::python::class_::def_pickle(const PickleSuiteType&) [with PickleSuiteType = dxtbx::format::boost_python::ImagePickleSuite; W = dxtbx::format::Image; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 345 | &PickleSuiteType::setstate, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:134:18: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = double]’ 122 | class_(name) | ~~~~~~~~~~~~~~~~~~~~~~~~ 123 | .def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~ 124 | .def("__init__", make_constructor(&make_image_from_flex)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 | .def("__getitem__", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 | .def("tile", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | .def("tile_names", &image_type::tile_names) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 | .def("n_tiles", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("empty", &image_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("append", &image_type::push_back) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("__len__", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | .def("__iter__", range(&image_type::begin, &image_type::end)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def_pickle(ImagePickleSuite()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:143:26: required from here 143 | image_wrapper("ImageDouble"); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:98:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 98 | for (std::size_t i = 0; i < boost::python::len(tile_list); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/beam.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.15 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/crystal.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.15 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/detector.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.15 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/experiment.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.15 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/goniometer_shadow_masking.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:30: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_circle(scitbx::af::ref >, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:79:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 79 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:80:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 80 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_polygon(scitbx::af::ref >, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:143:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 143 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:144:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 144 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In member function ‘dxtbx::format::ImageBuffer dxtbx::ImageSet::get_raw_data(std::size_t)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:651:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 651 | if (data_cache_.index == index) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In member function ‘dxtbx::format::Image dxtbx::ImageSet::get_raw_data_as_double(std::size_t)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1119:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1119 | if (double_raw_data_cache_.index == index) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: At global scope: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1066:20: warning: ‘virtual dxtbx::ImageSet dxtbx::ImageSet::partial_set(boost::python::api::object, std::size_t, std::size_t) const’ was hidden [-Woverloaded-virtual=] 1066 | virtual ImageSet partial_set(boost::python::object reader, | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1206:12: note: by ‘dxtbx::ImageSet dxtbx::ImageGrid::partial_set(std::size_t, std::size_t) const’ 1206 | ImageSet partial_set(std::size_t first, std::size_t last) const { | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageGrid::ImageGrid(const dxtbx::ImageSetData&, scitbx::af::int2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1142:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1142 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1142:5: note: in expansion of macro ‘DXTBX_ASSERT’ 1142 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageGrid::ImageGrid(const dxtbx::ImageSetData&, const scitbx::af::const_ref&, scitbx::af::int2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1156:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1156 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1156:5: note: in expansion of macro ‘DXTBX_ASSERT’ 1156 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: At global scope: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1066:20: warning: ‘virtual dxtbx::ImageSet dxtbx::ImageSet::partial_set(boost::python::api::object, std::size_t, std::size_t) const’ was hidden [-Woverloaded-virtual=] 1066 | virtual ImageSet partial_set(boost::python::object reader, | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1477:12: note: by ‘dxtbx::ImageSet dxtbx::ImageSequence::partial_set(std::size_t, std::size_t) const’ 1477 | ImageSet partial_set(std::size_t first, std::size_t last) const { | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageSequence::ImageSequence(const dxtbx::ImageSetData&, const dxtbx::ImageSet::beam_ptr&, const dxtbx::ImageSet::detector_ptr&, const dxtbx::ImageSet::goniometer_ptr&, const dxtbx::ImageSet::scan_ptr&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1241:23: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1241 | if (data.size() != scan->get_num_images()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/boost_python/ext.cc:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageSequence::ImageSequence(const dxtbx::ImageSetData&, const scitbx::af::const_ref&, const dxtbx::ImageSet::beam_ptr&, const dxtbx::ImageSet::detector_ptr&, const dxtbx::ImageSet::goniometer_ptr&, const dxtbx::ImageSet::scan_ptr&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1280:26: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1280 | if (indices.size() != scan->get_num_images()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In member function ‘void dxtbx::ImageSequence::set_scan(const dxtbx::ImageSet::scan_ptr&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1402:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1402 | if (scan->get_num_images() != size()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1418:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1418 | DXTBX_ASSERT(scan->get_num_images() == size()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1418:5: note: in expansion of macro ‘DXTBX_ASSERT’ 1418 | DXTBX_ASSERT(scan->get_num_images() == size()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:17: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_circle(scitbx::af::ref >, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:79:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 79 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:80:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 80 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_polygon(scitbx::af::ref >, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:143:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 143 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:144:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 144 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:17: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In instantiation of ‘dxtbx::format::Image dxtbx::ImageSetData::get_image_from_tuple(boost::python::tuple) [with T = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:469:56: required from here 469 | buffer = ImageBuffer(get_image_from_tuple(obj)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:505:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 505 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In instantiation of ‘dxtbx::format::Image dxtbx::ImageSetData::get_image_from_tuple(boost::python::tuple) [with T = float]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:471:55: required from here 471 | buffer = ImageBuffer(get_image_from_tuple(obj)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:505:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 505 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In instantiation of ‘dxtbx::format::Image dxtbx::ImageSetData::get_image_from_tuple(boost::python::tuple) [with T = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:473:53: required from here 473 | buffer = ImageBuffer(get_image_from_tuple(obj)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:505:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 505 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::BeamBase; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:250:56: required from here 250 | ImageSetDataPickleSuite::set_model_list( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 251 | obj, | ~~~~ 252 | boost::python::extract(models[0])(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 | &ImageSetData::set_beam); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:232:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 232 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:236:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 236 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::Detector; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:254:56: required from here 254 | ImageSetDataPickleSuite::set_model_list( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 255 | obj, | ~~~~ 256 | boost::python::extract(models[1]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 | &ImageSetData::set_detector); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:232:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 232 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:236:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 236 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::Goniometer; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:258:58: required from here 258 | ImageSetDataPickleSuite::set_model_list( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 259 | obj, | ~~~~ 260 | boost::python::extract(models[2]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 | &ImageSetData::set_goniometer); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:232:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 232 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:236:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 236 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::Scan; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:262:52: required from here 262 | ImageSetDataPickleSuite::set_model_list( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 263 | obj, | ~~~~ 264 | boost::python::extract(models[3]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 | &ImageSetData::set_scan); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:232:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 232 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:236:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 236 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:17: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc: In function ‘void dxtbx::model::boost_python::beam_detail::Beam_set_s0_at_scan_points_from_tuple(dxtbx::model::Beam&, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:209:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 209 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc: In function ‘void dxtbx::model::boost_python::beam_detail::Beam_set_s0_at_scan_points_from_list(dxtbx::model::Beam&, boost::python::list)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:219:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 219 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc: In static member function ‘static boost::python::tuple dxtbx::model::boost_python::PolychromaticBeamPickleSuite::getstate(boost::python::api::object)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:302:32: warning: unused variable ‘beam’ [-Wunused-variable] 302 | const PolychromaticBeam &beam = | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc: In static member function ‘static void dxtbx::model::boost_python::PolychromaticBeamPickleSuite::setstate(boost::python::api::object, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:308:26: warning: unused variable ‘beam’ [-Wunused-variable] 308 | PolychromaticBeam &beam = boost::python::extract(obj)(); | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc: In function ‘void dxtbx::model::boost_python::Crystal_set_A_at_scan_points_from_tuple(dxtbx::model::CrystalBase&, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc:119:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 119 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc: In function ‘void dxtbx::model::boost_python::Crystal_set_A_at_scan_points_from_list(dxtbx::model::CrystalBase&, boost::python::list)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc:129:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 129 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc: In function ‘void dxtbx::model::boost_python::Crystal_set_B_covariance_from_tuple(dxtbx::model::CrystalBase&, boost::python::api::object)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc:141:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 141 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/virtual_panel.h:28, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel_data.h:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:23: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:24: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:19: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment.cc:17: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment.h:23: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc: In function ‘void dxtbx::model::boost_python::detector_detail::node_from_dict(boost::python::dict, dxtbx::model::Detector::Node*, boost::python::list, scitbx::af::ref)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:89:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 89 | DXTBX_ASSERT(used.size() == boost::python::len(panels)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:89:9: note: in expansion of macro ‘DXTBX_ASSERT’ 89 | DXTBX_ASSERT(used.size() == boost::python::len(panels)); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:90:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 90 | DXTBX_ASSERT(idx < boost::python::len(panels)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:90:9: note: in expansion of macro ‘DXTBX_ASSERT’ 90 | DXTBX_ASSERT(idx < boost::python::len(panels)); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:101:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 101 | for (std::size_t i = 0; i < boost::python::len(obj["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc: In function ‘dxtbx::model::Detector* dxtbx::model::boost_python::detector_detail::detector_from_dict(dxtbx::model::Detector*, boost::python::dict)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:125:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 125 | for (std::size_t i = 0; i < boost::python::len(hierarchy["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:135:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 135 | for (std::size_t i = 0; i < boost::python::len(panels); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc: In function ‘dxtbx::model::Detector* dxtbx::model::boost_python::detector_detail::detector_from_dict(dxtbx::model::Detector*, boost::python::dict, const dxtbx::format::Image&, const dxtbx::format::Image&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:159:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 159 | for (std::size_t i = 0; i < boost::python::len(hierarchy["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:169:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 169 | for (std::size_t i = 0; i < boost::python::len(panels); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment.h:25: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc: In static member function ‘static void dxtbx::model::boost_python::detector_detail::DetectorPickleSuite::copy_node(dxtbx::model::Detector::Node::pointer, boost::python::dict, boost::python::list)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:229:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 229 | for (std::size_t i = 0; i < boost::python::len(node["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment.h:19: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/experiment_list.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.15 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/goniometer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.15 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/history.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.15 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/history.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment_list.h:23, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:20: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment.h:23: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment.h:25: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:20: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ g++ -o dxtbx/src/dxtbx/model/boost_python/kappa_goniometer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.15 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/kappa_goniometer.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment_list.h:20: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/goniometer.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:17: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘dxtbx::model::ExperimentList* dxtbx::model::boost_python::make_experiment_list(boost::python::api::object)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:30:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 30 | for (std::size_t i = 0; i < boost::python::len(items); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘void dxtbx::model::boost_python::experiment_list_setitem(dxtbx::model::ExperimentList&, int, dxtbx::model::Experiment)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:174:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 174 | if (n >= self.size() || n < 0) { | ~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘dxtbx::model::Experiment& dxtbx::model::boost_python::experiment_list_getitem(dxtbx::model::ExperimentList&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:184:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | if (n >= self.size() || n < 0) { | ~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘dxtbx::model::ExperimentList dxtbx::model::boost_python::experiment_list_getitem_slice(const dxtbx::model::ExperimentList&, boost::python::slice)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:193:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 193 | for (std::size_t i = as.start; i < as.stop && i < self.size(); i += as.step) { | ~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘void dxtbx::model::boost_python::experiment_list_delitem(dxtbx::model::ExperimentList&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:203:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 203 | if (n >= self.size() || n < 0) { | ~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc: In function ‘void dxtbx::model::boost_python::goniometer_detail::Goniometer_set_S_at_scan_points_from_tuple(dxtbx::model::Goniometer&, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:79:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 79 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc: In function ‘void dxtbx::model::boost_python::goniometer_detail::Goniometer_set_S_at_scan_points_from_list(dxtbx::model::Goniometer&, boost::python::list)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 89 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/model_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.15 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/model_ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.15 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/panel.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.15 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/panel.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/parallax_correction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.15 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/parallax_correction.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.15 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/goniometer.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc:16: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc: In function ‘T* dxtbx::model::boost_python::from_dict(boost::python::dict) [with T = dxtbx::model::MultiAxisGoniometer]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc:105:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 105 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/virtual_panel.h:28, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel_data.h:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/panel.cc:21: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/panel.cc:22: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/panel.cc:19: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/scan.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.15 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/virtual_panel.h:28, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel_data.h:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.cc:14: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/scan_helpers.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.15 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan_helpers.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:19: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/spectrum.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.15 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/spectrum.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec2.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:17: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:20: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan_helpers.cc:16: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc: In static member function ‘static void dxtbx::model::boost_python::ScanPickleSuite::setstate(dxtbx::model::Scan&, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:162:41: warning: comparison of integer expressions of different signedness: ‘boost::python::ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 162 | DXTBX_ASSERT(len(properties_dict) == ncols); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:162:7: note: in expansion of macro ‘DXTBX_ASSERT’ 162 | DXTBX_ASSERT(len(properties_dict) == ncols); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc: In function ‘boost::python::dict dxtbx::model::boost_python::MaptoPythonDict(dxtbx::model::ExpImgRangeMap)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:187:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 187 | for (int k = 0; k < val.size(); ++k) { | ~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc: In function ‘boost::python::list dxtbx::model::boost_python::get_valid_image_ranges(dxtbx::model::Scan&, std::string)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:374:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 374 | for (int k = 0; k < ranges.size(); ++k) { | ~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:24: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘T* dxtbx::af::flex_table_suite::make_flex_table(boost::python::list) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1233:42: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:416:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 416 | for (std::size_t i = 0; i < len(columns); ++i) { | ~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘void dxtbx::af::flex_table_suite::setitem_row(T&, typename T::size_type, boost::python::dict) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; typename T::size_type = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1252:13: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1232 | flex_table_class.def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1234 | .def("types", &types) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1235 | .def("has_key", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 | .def("clear", &flex_table_type::clear) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 | .def("empty", &flex_table_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1238 | .def("resize", &flex_table_type::resize) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1239 | .def("append", &append) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 | .def("insert", &insert) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 | .def("extend", &extend) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1242 | .def("update", &update) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 | .def("nrows", &flex_table_type::nrows) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1244 | .def("ncols", &flex_table_type::ncols) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 | .def("is_consistent", &flex_table_type::is_consistent) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 | .def("size", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 | .def("__len__", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 | .def("__contains__", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 | .def("__getitem__", &getitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1250 | .def("__getitem__", &getitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 | .def("__getitem__", &getitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1252 | .def("__setitem__", &setitem_row) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:525:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 525 | for (std::size_t i = 0; i < len(row); ++i) { | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘T dxtbx::af::flex_table_suite::select_cols_tuple(const T&, boost::python::tuple) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1265:13: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1232 | flex_table_class.def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1234 | .def("types", &types) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1235 | .def("has_key", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 | .def("clear", &flex_table_type::clear) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 | .def("empty", &flex_table_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1238 | .def("resize", &flex_table_type::resize) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1239 | .def("append", &append) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 | .def("insert", &insert) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 | .def("extend", &extend) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1242 | .def("update", &update) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 | .def("nrows", &flex_table_type::nrows) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1244 | .def("ncols", &flex_table_type::ncols) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 | .def("is_consistent", &flex_table_type::is_consistent) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 | .def("size", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 | .def("__len__", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 | .def("__contains__", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 | .def("__getitem__", &getitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1250 | .def("__getitem__", &getitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 | .def("__getitem__", &getitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1252 | .def("__setitem__", &setitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1253 | .def("__setitem__", &setitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1254 | .def("__delitem__", &delitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1255 | .def("__delitem__", &delitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1256 | .def("__delitem__", &delitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1257 | .def("__iter__", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1258 | .def("cols", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 | .def("items", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 | .def("rows", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 | .def("keys", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1262 | .def("select", &select_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1263 | .def("select", &select_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1264 | .def("select", &select_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1265 | .def("select", &select_cols_tuple) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:747:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 747 | for (std::size_t i = 0; i < len(keys); ++i) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘void dxtbx::af::flex_table_suite::set_selected_cols_tuple(T&, boost::python::tuple, const T&) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1269:13: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1232 | flex_table_class.def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1234 | .def("types", &types) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1235 | .def("has_key", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 | .def("clear", &flex_table_type::clear) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 | .def("empty", &flex_table_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1238 | .def("resize", &flex_table_type::resize) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1239 | .def("append", &append) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 | .def("insert", &insert) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 | .def("extend", &extend) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1242 | .def("update", &update) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 | .def("nrows", &flex_table_type::nrows) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1244 | .def("ncols", &flex_table_type::ncols) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 | .def("is_consistent", &flex_table_type::is_consistent) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 | .def("size", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 | .def("__len__", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 | .def("__contains__", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 | .def("__getitem__", &getitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1250 | .def("__getitem__", &getitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 | .def("__getitem__", &getitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1252 | .def("__setitem__", &setitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1253 | .def("__setitem__", &setitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1254 | .def("__delitem__", &delitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1255 | .def("__delitem__", &delitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1256 | .def("__delitem__", &delitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1257 | .def("__iter__", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1258 | .def("cols", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 | .def("items", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 | .def("rows", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 | .def("keys", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1262 | .def("select", &select_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1263 | .def("select", &select_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1264 | .def("select", &select_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1265 | .def("select", &select_cols_tuple) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1266 | .def("set_selected", &set_selected_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1267 | .def("set_selected", &set_selected_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1268 | .def("set_selected", &set_selected_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1269 | .def("set_selected", &set_selected_cols_tuple) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:838:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 838 | for (std::size_t i = 0; i < len(keys); ++i) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘void dxtbx::af::flex_table_suite::del_selected_cols_tuple(T&, boost::python::tuple) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1273:13: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1232 | flex_table_class.def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1234 | .def("types", &types) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1235 | .def("has_key", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 | .def("clear", &flex_table_type::clear) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 | .def("empty", &flex_table_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1238 | .def("resize", &flex_table_type::resize) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1239 | .def("append", &append) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 | .def("insert", &insert) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 | .def("extend", &extend) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1242 | .def("update", &update) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 | .def("nrows", &flex_table_type::nrows) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1244 | .def("ncols", &flex_table_type::ncols) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 | .def("is_consistent", &flex_table_type::is_consistent) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 | .def("size", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 | .def("__len__", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 | .def("__contains__", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 | .def("__getitem__", &getitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1250 | .def("__getitem__", &getitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 | .def("__getitem__", &getitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1252 | .def("__setitem__", &setitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1253 | .def("__setitem__", &setitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1254 | .def("__delitem__", &delitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1255 | .def("__delitem__", &delitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1256 | .def("__delitem__", &delitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1257 | .def("__iter__", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1258 | .def("cols", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 | .def("items", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 | .def("rows", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 | .def("keys", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1262 | .def("select", &select_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1263 | .def("select", &select_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1264 | .def("select", &select_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1265 | .def("select", &select_cols_tuple) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1266 | .def("set_selected", &set_selected_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1267 | .def("set_selected", &set_selected_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1268 | .def("set_selected", &set_selected_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1269 | .def("set_selected", &set_selected_cols_tuple) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1270 | .def("del_selected", &del_selected_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1271 | .def("del_selected", &del_selected_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1272 | .def("del_selected", &del_selected_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1273 | .def("del_selected", &del_selected_cols_tuple) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:890:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 890 | for (std::size_t i = 0; i < len(keys); ++i) { | ~~^~~~~~~~~~~ g++ -o lib/libcbf-private.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libcbf-private.so.0 cbflib_adaptbx/detectors/mar_adaptor.o cbflib_adaptbx/detectors/cbf_adaptor.o cbflib_adaptbx/detectors/cbf_byte_offset_optimized.o cbflib_adaptbx/detectors/buffer_based_service.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lhdf5_serial -lcbf Create symlinks for: 'lib/libcbf-private.so.0.0.1' 'lib/libcbf-private.so.0'->'lib/libcbf-private.so.0.0.1' 'lib/libcbf-private.so'->'lib/libcbf-private.so.0.0.1' g++ -o exe_dev/cbflib.tst_memory -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cbflib_adaptbx/detectors/tst_memory.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcbf -lcbf-private -lm -lhdf5_serial g++ -o exe_dev/cctbx.convert_ccp4_symop_lib -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/examples/convert_ccp4_symop_lib.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o exe_dev/cctbx.find_distances -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/examples/find_distances.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o exe_dev/cctbx.getting_started -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/examples/getting_started.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o exe_dev/cctbx.lattice_symmetry -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/examples/lattice_symmetry.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o exe_dev/cctbx.sym_equiv_sites -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/examples/sym_equiv_sites.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o exe_dev/cctbx.sys_abs_equiv_space_groups -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/examples/sys_abs_equiv_space_groups.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o fable/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/spectrum.cc:10: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ g++ -o gltbx/font_ucs_10x20.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/font_ucs_10x20.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/spectrum.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/spectrum.cc:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ g++ -o gltbx/font_ucs_8x13.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/font_ucs_8x13.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/font_ucs_9x15.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/font_ucs_9x15.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/fonts_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx/fonts_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_00_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/gl_defines_00_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/ext.cpp:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/ext.cpp:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string.hpp:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/str_ref.hpp:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/format.hpp:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/ext.cpp:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/ext.cpp: In function ‘unsigned int fable::ext::get_code_stop(const boost::python::api::object&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/ext.cpp:24:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 24 | TBXX_ASSERT(stop <= len_code); | ~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/tbxx/error_utils.hpp:59:9: note: in definition of macro ‘TBXX_ASSERT’ 59 | if (!(condition)) { \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/ext.cpp: In function ‘int fable::ext::floating_point_scan_after_dot(const boost::python::api::object&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/ext.cpp:71:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 71 | if (i < code_stop) { | ~~^~~~~~~~~~~ g++ -o gltbx/gl_defines_01_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/gl_defines_01_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_02_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/gl_defines_02_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_03_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/gl_defines_03_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_04_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/gl_defines_04_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_05_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/gl_defines_05_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_06_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/gl_defines_06_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_07_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/gl_defines_07_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx/gl_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_00_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/gl_functions_00_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_01_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/gl_functions_01_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_02_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/gl_functions_02_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_03_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/gl_functions_03_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_04_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/gl_functions_04_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_05_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/gl_functions_05_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_06_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/gl_functions_06_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_07_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/gl_functions_07_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_08_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/gl_functions_08_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_09_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/gl_functions_09_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:23: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table.h: In member function ‘void dxtbx::af::flex_table::insert_visitor::operator()(T&) const [with T = scitbx::af::shared >; VarientType = boost::variant, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table.h:218:17: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 218 | v.insert(v.begin() + pos, n, typename T::value_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:124:12: note: by argument 4 of type ‘const scitbx::vec2&’ to ‘void scitbx::af::shared_plain::insert(ElementType*, const size_type&, const ElementType&) [with ElementType = scitbx::vec2]’ declared here 124 | void insert(ElementType* pos, size_type const& n, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table.h:218:50: note: ‘’ declared here 218 | v.insert(v.begin() + pos, n, typename T::value_type()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table.h: In member function ‘void dxtbx::af::flex_table::insert_visitor::operator()(T&) const [with T = scitbx::af::shared >; VarientType = boost::variant, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table.h:218:17: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 218 | v.insert(v.begin() + pos, n, typename T::value_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:124:12: note: by argument 4 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::insert(ElementType*, const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 124 | void insert(ElementType* pos, size_type const& n, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table.h:218:50: note: ‘’ declared here 218 | v.insert(v.begin() + pos, n, typename T::value_type()); | ^~~~~~~~~~~~ g++ -o gltbx/gl_functions_10_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/gl_functions_10_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In function ‘void dxtbx::af::flex_table_suite::type_appender::operator()(U) [with U = scitbx::af::shared >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:905:54: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 905 | type_list.append(object(handle<>(PyObject_Type(object(a).ptr())))); | ^~~~~~~~~ In file included from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:11: /usr/include/boost/python/object_core.hpp:246:16: note: by argument 2 of type ‘const scitbx::vec2&’ to ‘boost::python::api::object::object(const T&) [with T = scitbx::vec2]’ declared here 246 | explicit object(T const& x) | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:904:30: note: ‘a’ declared here 904 | typename U::value_type a = typename U::value_type(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In function ‘void dxtbx::af::flex_table_suite::type_appender::operator()(U) [with U = scitbx::af::shared >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:905:54: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 905 | type_list.append(object(handle<>(PyObject_Type(object(a).ptr())))); | ^~~~~~~~~ /usr/include/boost/python/object_core.hpp:246:16: note: by argument 2 of type ‘const scitbx::vec3&’ to ‘boost::python::api::object::object(const T&) [with T = scitbx::vec3]’ declared here 246 | explicit object(T const& x) | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:904:30: note: ‘a’ declared here 904 | typename U::value_type a = typename U::value_type(); | ^ g++ -o gltbx/gl_functions_11_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/gl_functions_11_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_12_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/gl_functions_12_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_13_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/gl_functions_13_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_14_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/gl_functions_14_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_15_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/gl_functions_15_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_defines_00_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/glu_defines_00_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_defines_01_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/glu_defines_01_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx/glu_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_functions_00_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/glu_functions_00_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_functions_01_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/glu_functions_01_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_functions_02_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/glu_functions_02_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_functions_03_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 gltbx/glu_functions_03_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/quadrics_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx/quadrics_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/util_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx/util_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/viewer_utils_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx/viewer_utils_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/ccp4_map/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/cif/boost_python/cif_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/cif/boost_python/cif_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/detectors/bruker.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/detectors/bruker.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp: In function ‘void iotbx::ccp4_map::write_ccp4_map_set_grid(const std::string&, const cctbx::uctbx::unit_cell&, const cctbx::sgtbx::space_group&, const scitbx::af::int3&, const scitbx::af::const_ref >&, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:178:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 178 | for (int i = 0; i < labels.size(); i++) { | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:213:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 213 | for (int i = 0; i < data_ref.accessor()[0]; i++) { /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:215:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 215 | for (int j = 0; j < data_ref.accessor()[1]; j++) { /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:216:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 216 | for (int k = 0; k < data_ref.accessor()[2]; k++) { /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp: In function ‘void iotbx::ccp4_map::write_ccp4_map_box(const std::string&, const cctbx::uctbx::unit_cell&, const cctbx::sgtbx::space_group&, const scitbx::af::const_ref >&, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:245:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 245 | for (int i = 0; i < labels.size(); i++) { | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:278:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 278 | for (int i = 0; i < data_ref.accessor()[0]; i++) { /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:280:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 280 | for (int j = 0; j < data_ref.accessor()[1]; j++) { /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:281:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 281 | for (int k = 0; k < data_ref.accessor()[2]; k++) { /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp: In function ‘void iotbx::ccp4_map::write_ccp4_map_p1_cell(const std::string&, const cctbx::uctbx::unit_cell&, const cctbx::sgtbx::space_group&, const scitbx::af::int3&, const scitbx::af::int3&, const scitbx::af::const_ref >&, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:311:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 311 | for (int i = 0; i < labels.size(); i++) { | ~~^~~~~~~~~~~~~~~ g++ -o iotbx/detectors/bruker_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/detectors/bruker_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/detectors/detectors_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/detectors/detectors_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/detectors/image_divider.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/detectors/image_divider.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/dsn6/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/dsn6/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/misc/boost_python/dtrek_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/misc/boost_python/dtrek_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/misc/boost_python/scalepack_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/misc/boost_python/scalepack_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/batch_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/batch_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/column.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/column_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/crystal.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/crystal_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column.cpp: In member function ‘void iotbx::mtz::column::set_reals(const scitbx::af::const_ref&, const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column.cpp:253:48: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 253 | IOTBX_ASSERT(mtz_reflection_indices.size() <= nref_at_entry); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column.cpp:253:5: note: in expansion of macro ‘IOTBX_ASSERT’ 253 | IOTBX_ASSERT(mtz_reflection_indices.size() <= nref_at_entry); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ g++ -o iotbx/mtz/dataset.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/batch.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/batch_bpl.cpp:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/hendrickson_lattman.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:13: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::batch; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/batch_bpl.cpp:78:60: required from here 78 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 79 | "shared_batch"); | ~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column_bpl.cpp:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ g++ -o iotbx/mtz/dataset_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/object.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/hendrickson_lattman.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:13: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::column; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column_bpl.cpp:76:60: required from here 76 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 77 | "shared_column"); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o iotbx/mtz/object_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/batch.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal_bpl.cpp:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/hendrickson_lattman.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:13: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::crystal; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal_bpl.cpp:42:60: required from here 42 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 43 | "shared_crystal"); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/hendrickson_lattman.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/sym_equiv.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/asu.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.cpp:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.cpp: In member function ‘void iotbx::mtz::object::replace_miller_indices(const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.cpp:433:40: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 433 | IOTBX_ASSERT(miller_indices.size() == n_reflections()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.cpp:433:5: note: in expansion of macro ‘IOTBX_ASSERT’ 433 | IOTBX_ASSERT(miller_indices.size() == n_reflections()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.cpp:435:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 435 | for(int i_refl=0;i_refl iotbx::mtz::object::extract_integers(const scitbx::af::const_ref&, const char*) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.cpp:624:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 624 | for(int i=0;i iotbx::mtz::object::extract_reals(const scitbx::af::const_ref&, const char*) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.cpp:684:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 684 | for(int i=0;i&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/batch.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object_bpl.cpp:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/hendrickson_lattman.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:13: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::dataset; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset_bpl.cpp:43:60: required from here 43 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 44 | "shared_dataset"); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o iotbx/pdb/common_residue_names_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/common_residue_names_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/construct_hierarchy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/construct_hierarchy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/construct_hierarchy.cpp: In member function ‘iotbx::pdb::hierarchy::root iotbx::pdb::input::construct_hierarchy(bool, bool, bool)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/construct_hierarchy.cpp:97:20: warning: variable ‘i_chain’ set but not used [-Wunused-but-set-variable=] 97 | for(unsigned i_chain=0;ch_r.next();i_chain++) { | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/construct_hierarchy.cpp: In member function ‘void iotbx::pdb::input_atoms_with_labels_generator::run(const iotbx::pdb::input&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/construct_hierarchy.cpp:222:20: warning: variable ‘i_chain’ set but not used [-Wunused-but-set-variable=] 222 | for(unsigned i_chain=0;ch_r.next();i_chain++) { | ^~~~~~~ g++ -o iotbx/pdb/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy_atom_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atom_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy.cpp: In member function ‘bool iotbx::pdb::hierarchy::chain::is_polymer_chain() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy.cpp:1795:26: warning: variable ‘n_water’ set but not used [-Wunused-but-set-variable=] 1795 | int n_polymer_res=0, n_water=0, n_unk = 0, n_non_polymer=0; | ^~~~~~~ g++ -o iotbx/pdb/hierarchy_atoms.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy_atoms_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:167:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/16/memory:80, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/misc.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/namespace.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:4: /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:173:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 173 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp:244:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp: In function ‘std::auto_ptr iotbx::pdb::hierarchy::atoms::reset_tmp(const scitbx::af::const_ref&, int, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp:250:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 250 | std::auto_ptr result(new atom_tmp_sentinel(atoms)); | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp: At global scope: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp:259:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 259 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp: In function ‘std::auto_ptr iotbx::pdb::hierarchy::atoms::reset_tmp_for_occupancy_groups_simple(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp:263:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 263 | std::auto_ptr result(new atom_tmp_sentinel(atoms)); | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ g++ -o iotbx/pdb/hierarchy_select.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_select.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy_write.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_write.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hybrid_36_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hybrid_36_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:2: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/16/memory:80, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/misc.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer_flags.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:4: /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:173:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 173 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_ext.cpp:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:167:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/16/memory:80, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_ext.cpp:4: /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:173:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 173 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp: In function ‘void iotbx::pdb::hierarchy::atoms::bpl_wrap()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:84:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 84 | std::auto_ptr, | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_write.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:167:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/16/memory:80, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/misc.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/namespace.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:4: /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:173:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 173 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/cassert:46, from /usr/include/boost/function/function_template.hpp:20, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::pdb::hierarchy::atom; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:87:36: required from here 87 | class_ wa = wat::wrap("af_shared_atom"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ gcc -o iotbx/pdb/hybrid_36_c.o -c -std=gnu17 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hybrid_36_c.c /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::pdb::hierarchy::atom_with_labels; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:91:44: required from here 91 | class_ wawl = wawl_t::wrap("af_shared_atom_with_labels"); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o iotbx/pdb/hybrid_36_cpp.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hybrid_36_cpp.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hybrid_36_fem.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable iotbx/pdb/hybrid_36_fem.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/input.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/input.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/io.hpp:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/close_chain.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem.hpp:10, from iotbx/pdb/hybrid_36_fem.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp: In member function ‘void fem::common::getarg(int, fem::str_ref) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp:40:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/variant.hpp:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:8: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/file_utils.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/input.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h: In function ‘scitbx::af::shared > scitbx::misc::split_lines(const char*, std::size_t, bool, bool)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:24:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 24 | while (i < size) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:25:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 25 | while (i < size && data[i] != '\n' && data[i] != '\r') i++; | ~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:27:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 27 | if (i < size) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:28:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 28 | if (data[i] == '\r' && i+1 < size && data[i+1] == '\n') { | ~~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:46:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | if (j < size) { | ~~^~~~~~ g++ -o iotbx/pdb/input_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/input_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hybrid_36_fem -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread iotbx/pdb/hybrid_36_fem.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o iotbx/pdb/input_write.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/input_write.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/overall_counts.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/overall_counts.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/rna_dna_atom_names_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/rna_dna_atom_names_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/write_utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/write_utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/write_utils.cpp: In destructor ‘iotbx::pdb::write_utils::fstream_open_close::~fstream_open_close()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/write_utils.cpp:42:7: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 42 | throw std::runtime_error( | ^~~~~~~~~~~~~~~~~~~~~~~~~ 43 | "Failure writing to file: \"" + file_name + "\""); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/write_utils.cpp:42:7: note: in C++11 destructors default to ‘noexcept’ g++ -o iotbx/pdb/xray_structure_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/xray_structure_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/shelx/shelx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/shelx/shelx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/wildcard_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/wildcard_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/xray_structure.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/xray_structure_bpl.cpp:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ g++ -o iotbx/xplor/boost_python/xplor_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/xplor/boost_python/xplor_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libann_adaptor.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libann_adaptor.so.0 annlib_adaptbx/ann/ann_adaptor.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lann-cctbx Create symlinks for: 'lib/libann_adaptor.so.0.0.1' 'lib/libann_adaptor.so.0'->'lib/libann_adaptor.so.0.0.1' 'lib/libann_adaptor.so'->'lib/libann_adaptor.so.0.0.1' g++ -o lib/annlib_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=annlib_ext.so.0 annlib_adaptbx/ann/boost_python/annlib_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lann-cctbx -lann_adaptor -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/annlib_ext.so.0.0.1' 'lib/annlib_ext.so.0'->'lib/annlib_ext.so.0.0.1' 'lib/annlib_ext.so'->'lib/annlib_ext.so.0.0.1' g++ -o lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_boost_thread_test_ext.so.0 boost_adaptbx/tests/boost_thread_test.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1' 'lib/boost_adaptbx_boost_thread_test_ext.so.0'->'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1' 'lib/boost_adaptbx_boost_thread_test_ext.so'->'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_breadth_first_search_ext.so.0 boost_adaptbx/graph/breadth_first_search_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python315 -lm g++ -o lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_clustering_algorithm_ext.so.0 boost_adaptbx/graph/clustering_algorithm_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1' 'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0'->'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1' 'lib/boost_adaptbx_graph_breadth_first_search_ext.so'->'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_connected_component_algorithm_ext.so.0 boost_adaptbx/graph/connected_component_algorithm_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0'->'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so'->'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_ext.so.0 boost_adaptbx/graph/graph_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0'->'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so'->'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_graph_structure_comparison_ext.so.0 boost_adaptbx/graph/graph_structure_comparison_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1' 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0'->'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1' 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so'->'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_maximum_clique_ext.so.0 boost_adaptbx/graph/maximum_clique_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python315 -lm g++ -o lib/boost_adaptbx_graph_metric_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_metric_ext.so.0 boost_adaptbx/graph/metric_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/boost_adaptbx_graph_metric_ext.so.0.0.1' 'lib/boost_adaptbx_graph_metric_ext.so.0'->'lib/boost_adaptbx_graph_metric_ext.so.0.0.1' 'lib/boost_adaptbx_graph_metric_ext.so'->'lib/boost_adaptbx_graph_metric_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_min_cut_max_flow_ext.so.0 boost_adaptbx/graph/min_cut_max_flow_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1' 'lib/boost_adaptbx_graph_maximum_clique_ext.so.0'->'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1' 'lib/boost_adaptbx_graph_maximum_clique_ext.so'->'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_utility_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_utility_ext.so.0 boost_adaptbx/graph/utility_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/boost_adaptbx_graph_utility_ext.so.0.0.1' 'lib/boost_adaptbx_graph_utility_ext.so.0'->'lib/boost_adaptbx_graph_utility_ext.so.0.0.1' 'lib/boost_adaptbx_graph_utility_ext.so'->'lib/boost_adaptbx_graph_utility_ext.so.0.0.1' Create symlinks for: 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1' 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0'->'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1' 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so'->'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1' g++ -o lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_python_streambuf_test_ext.so.0 boost_adaptbx/tests/python_streambuf_test_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python315 -lm -lboost_timer g++ -o lib/boost_optional_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_optional_ext.so.0 boost_adaptbx/optional_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python315 -lm -lboost_timer Create symlinks for: 'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1' 'lib/boost_adaptbx_python_streambuf_test_ext.so.0'->'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1' 'lib/boost_adaptbx_python_streambuf_test_ext.so'->'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1' g++ -o lib/boost_python_hybrid_times_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_python_hybrid_times_ext.so.0 boost_adaptbx/hybrid_times_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/boost_optional_ext.so.0.0.1' 'lib/boost_optional_ext.so.0'->'lib/boost_optional_ext.so.0.0.1' 'lib/boost_optional_ext.so'->'lib/boost_optional_ext.so.0.0.1' g++ -o lib/boost_python_meta_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_python_meta_ext.so.0 boost_adaptbx/meta_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python315 -lm -lboost_timer Create symlinks for: 'lib/boost_python_hybrid_times_ext.so.0.0.1' 'lib/boost_python_hybrid_times_ext.so.0'->'lib/boost_python_hybrid_times_ext.so.0.0.1' 'lib/boost_python_hybrid_times_ext.so'->'lib/boost_python_hybrid_times_ext.so.0.0.1' g++ -o lib/boost_rational_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_rational_ext.so.0 boost_adaptbx/rational_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/boost_rational_ext.so.0.0.1' 'lib/boost_rational_ext.so.0'->'lib/boost_rational_ext.so.0.0.1' 'lib/boost_rational_ext.so'->'lib/boost_rational_ext.so.0.0.1' g++ -o lib/boost_tuple_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_tuple_ext.so.0 boost_adaptbx/tuple_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python315 -lm -lboost_timer Create symlinks for: 'lib/boost_python_meta_ext.so.0.0.1' 'lib/boost_python_meta_ext.so.0'->'lib/boost_python_meta_ext.so.0.0.1' 'lib/boost_python_meta_ext.so'->'lib/boost_python_meta_ext.so.0.0.1' g++ -o lib/cbflib_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cbflib_ext.so.0 cbflib_adaptbx/detectors/boost_python/cbflib_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcbf-private -lcbf -lboost_thread -lboost_python315 -lm -lhdf5_serial Create symlinks for: 'lib/boost_tuple_ext.so.0.0.1' 'lib/boost_tuple_ext.so.0'->'lib/boost_tuple_ext.so.0.0.1' 'lib/boost_tuple_ext.so'->'lib/boost_tuple_ext.so.0.0.1' g++ -o scitbx/boost_python/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/cbflib_ext.so.0.0.1' 'lib/cbflib_ext.so.0'->'lib/cbflib_ext.so.0.0.1' 'lib/cbflib_ext.so'->'lib/cbflib_ext.so.0.0.1' g++ -o scitbx/boost_python/slice.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/slice.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/boost_adaptbx_graph_ext.so.0.0.1' 'lib/boost_adaptbx_graph_ext.so.0'->'lib/boost_adaptbx_graph_ext.so.0.0.1' 'lib/boost_adaptbx_graph_ext.so'->'lib/boost_adaptbx_graph_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/cma_es_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cma_es_ext.so.0 cma_es/cma_es_ext.o cma_es/cma/cmaes.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python315 -lm g++ -o lib/dxtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_ext.so.0 dxtbx/src/dxtbx/boost_python/ext.o dxtbx/src/dxtbx/boost_python/compression.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/usr/lib -lm -ltiff -lboost_python315 -lcbf Create symlinks for: 'lib/cma_es_ext.so.0.0.1' 'lib/cma_es_ext.so.0'->'lib/cma_es_ext.so.0.0.1' 'lib/cma_es_ext.so'->'lib/cma_es_ext.so.0.0.1' g++ -o lib/dxtbx_format_image_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_format_image_ext.so.0 dxtbx/src/dxtbx/format/boost_python/image_ext.o dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/usr/lib -lm -ltiff -lboost_python315 -lcbf -lhdf5_serial Create symlinks for: 'lib/dxtbx_ext.so.0.0.1' 'lib/dxtbx_ext.so.0'->'lib/dxtbx_ext.so.0.0.1' 'lib/dxtbx_ext.so'->'lib/dxtbx_ext.so.0.0.1' g++ -o lib/dxtbx_format_nexus_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_format_nexus_ext.so.0 dxtbx/src/dxtbx/format/boost_python/nexus_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/usr/lib -lm -ltiff -lboost_python315 -lcbf -lhdf5_serial Create symlinks for: 'lib/dxtbx_format_nexus_ext.so.0.0.1' 'lib/dxtbx_format_nexus_ext.so.0'->'lib/dxtbx_format_nexus_ext.so.0.0.1' 'lib/dxtbx_format_nexus_ext.so'->'lib/dxtbx_format_nexus_ext.so.0.0.1' g++ -o lib/fable_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=fable_ext.so.0 fable/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/fable_ext.so.0.0.1' 'lib/fable_ext.so.0'->'lib/fable_ext.so.0.0.1' 'lib/fable_ext.so'->'lib/fable_ext.so.0.0.1' g++ -o lib/iotbx_ccp4_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_ccp4_map_ext.so.0 iotbx/ccp4_map/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lccp4c -lboost_thread -lboost_python315 -lm g++ -o ucif/cifParser.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ucif/cifParser.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/iotbx_ccp4_map_ext.so.0.0.1' 'lib/iotbx_ccp4_map_ext.so.0'->'lib/iotbx_ccp4_map_ext.so.0.0.1' 'lib/iotbx_ccp4_map_ext.so'->'lib/iotbx_ccp4_map_ext.so.0.0.1' g++ -o ucif/cifLexer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ucif/cifLexer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/iotbx_detectors_bruker_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_detectors_bruker_ext.so.0 iotbx/detectors/bruker_ext.o iotbx/detectors/bruker.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/iotbx_detectors_bruker_ext.so.0.0.1' 'lib/iotbx_detectors_bruker_ext.so.0'->'lib/iotbx_detectors_bruker_ext.so.0.0.1' 'lib/iotbx_detectors_bruker_ext.so'->'lib/iotbx_detectors_bruker_ext.so.0.0.1' g++ -o lib/iotbx_detectors_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_detectors_ext.so.0 iotbx/detectors/detectors_ext.o iotbx/detectors/image_divider.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python315 -lm g++ -o lib/iotbx_dsn6_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_dsn6_map_ext.so.0 iotbx/dsn6/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/iotbx_dsn6_map_ext.so.0.0.1' 'lib/iotbx_dsn6_map_ext.so.0'->'lib/iotbx_dsn6_map_ext.so.0.0.1' 'lib/iotbx_dsn6_map_ext.so'->'lib/iotbx_dsn6_map_ext.so.0.0.1' g++ -o lib/iotbx_dtrek_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_dtrek_ext.so.0 iotbx/misc/boost_python/dtrek_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/dxtbx_format_image_ext.so.0.0.1' 'lib/dxtbx_format_image_ext.so.0'->'lib/dxtbx_format_image_ext.so.0.0.1' 'lib/dxtbx_format_image_ext.so'->'lib/dxtbx_format_image_ext.so.0.0.1' Create symlinks for: 'lib/iotbx_dtrek_ext.so.0.0.1' 'lib/iotbx_dtrek_ext.so.0'->'lib/iotbx_dtrek_ext.so.0.0.1' 'lib/iotbx_dtrek_ext.so'->'lib/iotbx_dtrek_ext.so.0.0.1' g++ -o lib/libccp4io.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libccp4io.so.0 ccp4io_adaptbx/fortran_call_stubs.o ccp4io_adaptbx/printf_wrappers.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lm -lccp4c g++ -o lib/libscitbx_boost_python.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -shared -rdynamic -std=c++14 -Wl,-soname=libscitbx_boost_python.so.0 scitbx/boost_python/utils.o scitbx/boost_python/slice.o scitbx/array_family/boost_python/utils.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python315 g++ -o lib/libiotbx_pdb.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libiotbx_pdb.so.0 iotbx/pdb/hybrid_36_c.o iotbx/pdb/hybrid_36_cpp.o iotbx/pdb/utils.o iotbx/pdb/write_utils.o iotbx/pdb/hierarchy.o iotbx/pdb/hierarchy_select.o iotbx/pdb/hierarchy_atoms.o iotbx/pdb/construct_hierarchy.o iotbx/pdb/overall_counts.o iotbx/pdb/hierarchy_write.o iotbx/pdb/atom_selection.o iotbx/pdb/input.o iotbx/pdb/input_write.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread Create symlinks for: 'lib/libccp4io.so.0.0.1' 'lib/libccp4io.so.0'->'lib/libccp4io.so.0.0.1' 'lib/libccp4io.so'->'lib/libccp4io.so.0.0.1' g++ -o lib/libiotbx_mtz.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libiotbx_mtz.so.0 iotbx/mtz/object.o iotbx/mtz/crystal.o iotbx/mtz/dataset.o iotbx/mtz/column.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lccp4io -lccp4c -lm -lboost_thread Create symlinks for: 'lib/libscitbx_boost_python.so.0.0.1' 'lib/libscitbx_boost_python.so.0'->'lib/libscitbx_boost_python.so.0.0.1' 'lib/libscitbx_boost_python.so'->'lib/libscitbx_boost_python.so.0.0.1' g++ -o lib/cctbx_adptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_adptbx_ext.so.0 cctbx/adptbx/boost_python/adptbx_ext.o cctbx/adptbx/boost_python/hirshfeld.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/libiotbx_mtz.so.0.0.1' 'lib/libiotbx_mtz.so.0'->'lib/libiotbx_mtz.so.0.0.1' 'lib/libiotbx_mtz.so'->'lib/libiotbx_mtz.so.0.0.1' g++ -o lib/iotbx_mtz_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_mtz_ext.so.0 iotbx/mtz/ext.o iotbx/mtz/object_bpl.o iotbx/mtz/crystal_bpl.o iotbx/mtz/dataset_bpl.o iotbx/mtz/column_bpl.o iotbx/mtz/batch_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -liotbx_mtz -lcctbx -lccp4io -lccp4c -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/iotbx_detectors_ext.so.0.0.1' 'lib/iotbx_detectors_ext.so.0'->'lib/iotbx_detectors_ext.so.0.0.1' 'lib/iotbx_detectors_ext.so'->'lib/iotbx_detectors_ext.so.0.0.1' g++ -o lib/cctbx_emma_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_emma_ext.so.0 cctbx/boost_python/emma_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm g++ -o lib/gltbx_glu_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_glu_ext.so.0 gltbx/glu_ext.o gltbx/glu_defines_00_bpl.o gltbx/glu_defines_01_bpl.o gltbx/glu_functions_00_bpl.o gltbx/glu_functions_01_bpl.o gltbx/glu_functions_02_bpl.o gltbx/glu_functions_03_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lGLU -lGL -lm Create symlinks for: 'lib/cctbx_adptbx_ext.so.0.0.1' 'lib/cctbx_adptbx_ext.so.0'->'lib/cctbx_adptbx_ext.so.0.0.1' 'lib/cctbx_adptbx_ext.so'->'lib/cctbx_adptbx_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_emma_ext.so.0.0.1' 'lib/cctbx_emma_ext.so.0'->'lib/cctbx_emma_ext.so.0.0.1' 'lib/cctbx_emma_ext.so'->'lib/cctbx_emma_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_icsd_radii_ext.so.0 cctbx/eltbx/boost_python/icsd_radii_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm g++ -o lib/cctbx_xray_observations_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_xray_observations_ext.so.0 cctbx/xray/observations/boost_python/observations.o cctbx/xray/observations/boost_python/observations_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/libiotbx_pdb.so.0.0.1' 'lib/libiotbx_pdb.so.0'->'lib/libiotbx_pdb.so.0.0.1' 'lib/libiotbx_pdb.so'->'lib/libiotbx_pdb.so.0.0.1' Create symlinks for: 'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_icsd_radii_ext.so.0'->'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_icsd_radii_ext.so'->'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1' g++ -o lib/iotbx_pdb_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_pdb_ext.so.0 iotbx/pdb/ext.o iotbx/pdb/hybrid_36_bpl.o iotbx/pdb/common_residue_names_bpl.o iotbx/pdb/rna_dna_atom_names_bpl.o iotbx/pdb/input_bpl.o iotbx/pdb/xray_structure_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/gltbx_glu_ext.so.0.0.1' 'lib/gltbx_glu_ext.so.0'->'lib/gltbx_glu_ext.so.0.0.1' 'lib/gltbx_glu_ext.so'->'lib/gltbx_glu_ext.so.0.0.1' g++ -o lib/cctbx_dmtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_dmtbx_ext.so.0 cctbx/dmtbx/boost_python/dmtbx_ext.o cctbx/dmtbx/boost_python/triplet_phase_relation.o cctbx/dmtbx/boost_python/triplet_generator.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm g++ -o lib/gltbx_viewer_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_viewer_utils_ext.so.0 gltbx/viewer_utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lGLU -lGL -lm g++ -o lib/iotbx_cif_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_cif_ext.so.0 iotbx/cif/boost_python/cif_ext.o ucif/cifParser.o ucif/cifLexer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python315 -lm -lantlr3c Create symlinks for: 'lib/gltbx_viewer_utils_ext.so.0.0.1' 'lib/gltbx_viewer_utils_ext.so.0'->'lib/gltbx_viewer_utils_ext.so.0.0.1' 'lib/gltbx_viewer_utils_ext.so'->'lib/gltbx_viewer_utils_ext.so.0.0.1' g++ -o lib/cctbx_symmetry_search_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_symmetry_search_ext.so.0 cctbx/symmetry_search/boost_python/symmetry_search_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/iotbx_cif_ext.so.0.0.1' 'lib/iotbx_cif_ext.so.0'->'lib/iotbx_cif_ext.so.0.0.1' 'lib/iotbx_cif_ext.so'->'lib/iotbx_cif_ext.so.0.0.1' g++ -o lib/cctbx_xray_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_xray_ext.so.0 cctbx/xray/boost_python/xray_ext.o cctbx/xray/boost_python/conversions.o cctbx/xray/boost_python/gradient_flags.o cctbx/xray/boost_python/gradients_direct.o cctbx/xray/boost_python/each_hkl_gradients_direct.o cctbx/xray/boost_python/fast_gradients.o cctbx/xray/boost_python/minimization.o cctbx/xray/boost_python/scatterer_flags.o cctbx/xray/boost_python/scatterer.o cctbx/xray/boost_python/scattering_type_registry.o cctbx/xray/boost_python/sampling_base.o cctbx/xray/boost_python/sampled_model_density.o cctbx/xray/boost_python/structure_factors_direct.o cctbx/xray/boost_python/structure_factors_simple.o cctbx/xray/boost_python/curvatures_simple.o cctbx/xray/boost_python/targets.o cctbx/xray/boost_python/f_model_bpl.o cctbx/xray/boost_python/twin_targets.o cctbx/xray/boost_python/grouped_data.o cctbx/xray/boost_python/parameter_map.o cctbx/xray/boost_python/twin_components.o cctbx/xray/boost_python/extinction.o cctbx/xray/boost_python/sigmaa.o cctbx/xray/targets/shelxl_wght_ls_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm g++ -o lib/cctbx_eltbx_henke_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_henke_ext.so.0 cctbx/eltbx/boost_python/henke_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/cctbx_xray_observations_ext.so.0.0.1' 'lib/cctbx_xray_observations_ext.so.0'->'lib/cctbx_xray_observations_ext.so.0.0.1' 'lib/cctbx_xray_observations_ext.so'->'lib/cctbx_xray_observations_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_dmtbx_ext.so.0.0.1' 'lib/cctbx_dmtbx_ext.so.0'->'lib/cctbx_dmtbx_ext.so.0.0.1' 'lib/cctbx_dmtbx_ext.so'->'lib/cctbx_dmtbx_ext.so.0.0.1' g++ -o lib/cctbx_anharmonic_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_anharmonic_ext.so.0 cctbx/adptbx/boost_python/anharmonic_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm g++ -o lib/dxtbx_flumpy.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_flumpy.so.0 dxtbx/src/dxtbx/boost_python/flumpy.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/usr/lib -lm -ltiff -lboost_python315 -lcbf -lboost_thread -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python315 -lcbf -lhdf5_serial Create symlinks for: 'lib/cctbx_eltbx_henke_ext.so.0.0.1' 'lib/cctbx_eltbx_henke_ext.so.0'->'lib/cctbx_eltbx_henke_ext.so.0.0.1' 'lib/cctbx_eltbx_henke_ext.so'->'lib/cctbx_eltbx_henke_ext.so.0.0.1' g++ -o lib/cctbx_sgtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_sgtbx_ext.so.0 cctbx/sgtbx/boost_python/sgtbx_ext.o cctbx/sgtbx/boost_python/brick.o cctbx/sgtbx/boost_python/change_of_basis.o cctbx/sgtbx/boost_python/find_affine.o cctbx/sgtbx/boost_python/lattice_symmetry.o cctbx/sgtbx/boost_python/phase_info.o cctbx/sgtbx/boost_python/reciprocal_space_asu.o cctbx/sgtbx/boost_python/rot_mx.o cctbx/sgtbx/boost_python/rt_mx.o cctbx/sgtbx/boost_python/search_symmetry.o cctbx/sgtbx/boost_python/seminvariant.o cctbx/sgtbx/boost_python/site_symmetry.o cctbx/sgtbx/boost_python/space_group.o cctbx/sgtbx/boost_python/space_group_type.o cctbx/sgtbx/boost_python/sym_equiv_sites.o cctbx/sgtbx/boost_python/symbols.o cctbx/sgtbx/boost_python/tensor_rank_2.o cctbx/sgtbx/boost_python/tensors.o cctbx/sgtbx/boost_python/tr_vec.o cctbx/sgtbx/boost_python/wyckoff.o cctbx/sgtbx/boost_python/select_generators.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/cctbx_symmetry_search_ext.so.0.0.1' 'lib/cctbx_symmetry_search_ext.so.0'->'lib/cctbx_symmetry_search_ext.so.0.0.1' 'lib/cctbx_symmetry_search_ext.so'->'lib/cctbx_symmetry_search_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_anharmonic_ext.so.0.0.1' 'lib/cctbx_anharmonic_ext.so.0'->'lib/cctbx_anharmonic_ext.so.0.0.1' 'lib/cctbx_anharmonic_ext.so'->'lib/cctbx_anharmonic_ext.so.0.0.1' g++ -o lib/cctbx_miller_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_miller_ext.so.0 cctbx/miller/boost_python/miller_ext.o cctbx/miller/boost_python/asu.o cctbx/miller/boost_python/bins.o cctbx/miller/boost_python/change_basis.o cctbx/miller/boost_python/expand_to_p1.o cctbx/miller/boost_python/index_generator.o cctbx/miller/boost_python/index_span.o cctbx/miller/boost_python/match_bijvoet_mates.o cctbx/miller/boost_python/match_indices.o cctbx/miller/boost_python/match_multi_indices.o cctbx/miller/boost_python/merge_equivalents.o cctbx/miller/boost_python/phase_integrator.o cctbx/miller/boost_python/phase_transfer.o cctbx/miller/boost_python/sym_equiv.o cctbx/miller/boost_python/f_calc_map.o cctbx/miller/boost_python/lookup_utils.o cctbx/miller/boost_python/amplitude_normalisation.o cctbx/miller/boost_python/randomize_amplitude_and_phase.o cctbx/miller/boost_python/slices.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/iotbx_pdb_ext.so.0.0.1' 'lib/iotbx_pdb_ext.so.0'->'lib/iotbx_pdb_ext.so.0.0.1' 'lib/iotbx_pdb_ext.so'->'lib/iotbx_pdb_ext.so.0.0.1' g++ -o lib/cctbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_array_family_flex_ext.so.0 cctbx/array_family/boost_python/flex_ext.o cctbx/array_family/boost_python/flex_hendrickson_lattman.o cctbx/array_family/boost_python/flex_miller_index.o cctbx/array_family/boost_python/flex_xray_scatterer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm g++ -o lib/cctbx_translation_search_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_translation_search_ext.so.0 cctbx/translation_search/boost_python/translation_search_ext.o cctbx/translation_search/boost_python/fast_nv1995.o cctbx/translation_search/boost_python/fast_terms.o cctbx/translation_search/boost_python/symmetry_flags.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/cctbx_translation_search_ext.so.0.0.1' 'lib/cctbx_translation_search_ext.so.0'->'lib/cctbx_translation_search_ext.so.0.0.1' 'lib/cctbx_translation_search_ext.so'->'lib/cctbx_translation_search_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_neutron_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_neutron_ext.so.0 cctbx/eltbx/boost_python/neutron_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/cctbx_eltbx_neutron_ext.so.0.0.1' 'lib/cctbx_eltbx_neutron_ext.so.0'->'lib/cctbx_eltbx_neutron_ext.so.0.0.1' 'lib/cctbx_eltbx_neutron_ext.so'->'lib/cctbx_eltbx_neutron_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_tiny_pse_ext.so.0 cctbx/eltbx/boost_python/tiny_pse_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/iotbx_mtz_ext.so.0.0.1' 'lib/iotbx_mtz_ext.so.0'->'lib/iotbx_mtz_ext.so.0.0.1' 'lib/iotbx_mtz_ext.so'->'lib/iotbx_mtz_ext.so.0.0.1' g++ -o lib/gltbx_fonts_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_fonts_ext.so.0 gltbx/fonts_ext.o gltbx/font_ucs_8x13.o gltbx/font_ucs_9x15.o gltbx/font_ucs_10x20.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lGLU -lGL -lm Create symlinks for: 'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1' 'lib/cctbx_eltbx_tiny_pse_ext.so.0'->'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1' 'lib/cctbx_eltbx_tiny_pse_ext.so'->'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1' g++ -o lib/cctbx_statistics_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_statistics_ext.so.0 cctbx/boost_python/statistics_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/gltbx_fonts_ext.so.0.0.1' 'lib/gltbx_fonts_ext.so.0'->'lib/gltbx_fonts_ext.so.0.0.1' 'lib/gltbx_fonts_ext.so'->'lib/gltbx_fonts_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_xray_scattering_ext.so.0 cctbx/eltbx/boost_python/xray_scattering_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/cctbx_statistics_ext.so.0.0.1' 'lib/cctbx_statistics_ext.so.0'->'lib/cctbx_statistics_ext.so.0.0.1' 'lib/cctbx_statistics_ext.so'->'lib/cctbx_statistics_ext.so.0.0.1' g++ -o lib/cctbx_geometry_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_geometry_ext.so.0 cctbx/geometry/boost_python/geometry_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/cctbx_geometry_ext.so.0.0.1' 'lib/cctbx_geometry_ext.so.0'->'lib/cctbx_geometry_ext.so.0.0.1' 'lib/cctbx_geometry_ext.so'->'lib/cctbx_geometry_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_attenuation_coefficient_ext.so.0 cctbx/eltbx/boost_python/attenuation_coefficient_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/dxtbx_flumpy.so.0.0.1' 'lib/dxtbx_flumpy.so.0'->'lib/dxtbx_flumpy.so.0.0.1' 'lib/dxtbx_flumpy.so'->'lib/dxtbx_flumpy.so.0.0.1' g++ -o lib/cctbx_multipolar_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_multipolar_ext.so.0 cctbx/multipolar/aspherical_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1' 'lib/cctbx_eltbx_xray_scattering_ext.so.0'->'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1' 'lib/cctbx_eltbx_xray_scattering_ext.so'->'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1' g++ -o lib/cctbx_crystal_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_crystal_ext.so.0 cctbx/crystal/crystal_ext.o cctbx/crystal/asu_clusters_bpl.o cctbx/crystal/close_packing_bpl.o cctbx/crystal/coordination_sequences_bpl.o cctbx/crystal/direct_space_asu_bpl.o cctbx/crystal/incremental_pairs_bpl.o cctbx/crystal/neighbors_bpl.o cctbx/crystal/pair_tables_bpl.o cctbx/crystal/site_cluster_analysis_bpl.o cctbx/crystal/symmetry_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1' 'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0'->'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1' 'lib/cctbx_eltbx_attenuation_coefficient_ext.so'->'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_multipolar_ext.so.0.0.1' 'lib/cctbx_multipolar_ext.so.0'->'lib/cctbx_multipolar_ext.so.0.0.1' 'lib/cctbx_multipolar_ext.so'->'lib/cctbx_multipolar_ext.so.0.0.1' g++ -o lib/cctbx_adp_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_adp_restraints_ext.so.0 cctbx/adp_restraints/adp_restraints_bpl.o cctbx/adp_restraints/adp_restraints_ext.o cctbx/adp_restraints/rigid_bond_bpl.o cctbx/adp_restraints/rigu_bpl.o cctbx/adp_restraints/adp_similarity_bpl.o cctbx/adp_restraints/isotropic_adp_bpl.o cctbx/adp_restraints/aniso_restraints_bpl.o cctbx/adp_restraints/fixed_u_eq_adp_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm g++ -o lib/cctbx_geometry_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_geometry_restraints_ext.so.0 cctbx/geometry_restraints/geometry_restraints_ext.o cctbx/geometry_restraints/bond_bpl.o cctbx/geometry_restraints/bond_similarity_bpl.o cctbx/geometry_restraints/bond_sorted_bpl.o cctbx/geometry_restraints/nonbonded_bpl.o cctbx/geometry_restraints/nonbonded_sorted_bpl.o cctbx/geometry_restraints/angle_bpl.o cctbx/geometry_restraints/dihedral_bpl.o cctbx/geometry_restraints/chirality_bpl.o cctbx/geometry_restraints/planarity_bpl.o cctbx/geometry_restraints/parallelity_bpl.o cctbx/geometry_restraints/motif_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/cctbx_array_family_flex_ext.so.0.0.1' 'lib/cctbx_array_family_flex_ext.so.0'->'lib/cctbx_array_family_flex_ext.so.0.0.1' 'lib/cctbx_array_family_flex_ext.so'->'lib/cctbx_array_family_flex_ext.so.0.0.1' g++ -o lib/cctbx_orientation_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_orientation_ext.so.0 cctbx/boost_python/orientation_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/cctbx_miller_ext.so.0.0.1' 'lib/cctbx_miller_ext.so.0'->'lib/cctbx_miller_ext.so.0.0.1' 'lib/cctbx_miller_ext.so'->'lib/cctbx_miller_ext.so.0.0.1' g++ -o lib/determine_unit_cell_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=determine_unit_cell_ext.so.0 cctbx/uctbx/determine_unit_cell/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/cctbx_orientation_ext.so.0.0.1' 'lib/cctbx_orientation_ext.so.0'->'lib/cctbx_orientation_ext.so.0.0.1' 'lib/cctbx_orientation_ext.so'->'lib/cctbx_orientation_ext.so.0.0.1' g++ -o lib/gltbx_util_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_util_ext.so.0 gltbx/util_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lGLU -lGL -lm Create symlinks for: 'lib/determine_unit_cell_ext.so.0.0.1' 'lib/determine_unit_cell_ext.so.0'->'lib/determine_unit_cell_ext.so.0.0.1' 'lib/determine_unit_cell_ext.so'->'lib/determine_unit_cell_ext.so.0.0.1' g++ -o lib/gltbx_quadrics_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_quadrics_ext.so.0 gltbx/quadrics_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lGLU -lGL -lm Create symlinks for: 'lib/gltbx_util_ext.so.0.0.1' 'lib/gltbx_util_ext.so.0'->'lib/gltbx_util_ext.so.0.0.1' 'lib/gltbx_util_ext.so'->'lib/gltbx_util_ext.so.0.0.1' g++ -o lib/cctbx_covariance_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_covariance_ext.so.0 cctbx/covariance/boost_python/covariance_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/cctbx_covariance_ext.so.0.0.1' 'lib/cctbx_covariance_ext.so.0'->'lib/cctbx_covariance_ext.so.0.0.1' 'lib/cctbx_covariance_ext.so'->'lib/cctbx_covariance_ext.so.0.0.1' g++ -o lib/cctbx_maptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_maptbx_ext.so.0 cctbx/maptbx/boost_python/maptbx_ext.o cctbx/maptbx/boost_python/grid_indices_around_sites.o cctbx/maptbx/boost_python/grid_tags.o cctbx/maptbx/boost_python/gridding.o cctbx/maptbx/boost_python/misc.o cctbx/maptbx/boost_python/peak_search.o cctbx/maptbx/boost_python/pymol_interface.o cctbx/maptbx/boost_python/statistics.o cctbx/maptbx/boost_python/structure_factors.o cctbx/maptbx/boost_python/coordinate_transformers.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/gltbx_quadrics_ext.so.0.0.1' 'lib/gltbx_quadrics_ext.so.0'->'lib/gltbx_quadrics_ext.so.0.0.1' 'lib/gltbx_quadrics_ext.so'->'lib/gltbx_quadrics_ext.so.0.0.1' g++ -o lib/cctbx_french_wilson_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_french_wilson_ext.so.0 cctbx/boost_python/french_wilson_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/cctbx_french_wilson_ext.so.0.0.1' 'lib/cctbx_french_wilson_ext.so.0'->'lib/cctbx_french_wilson_ext.so.0.0.1' 'lib/cctbx_french_wilson_ext.so'->'lib/cctbx_french_wilson_ext.so.0.0.1' g++ -o lib/dxtbx_masking_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_masking_ext.so.0 dxtbx/src/dxtbx/masking/boost_python/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/usr/lib -lboost_thread -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python315 -lcbf -lhdf5_serial Create symlinks for: 'lib/cctbx_xray_ext.so.0.0.1' 'lib/cctbx_xray_ext.so.0'->'lib/cctbx_xray_ext.so.0.0.1' 'lib/cctbx_xray_ext.so'->'lib/cctbx_xray_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_chemical_elements_ext.so.0 cctbx/eltbx/boost_python/chemical_elements_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/cctbx_sgtbx_ext.so.0.0.1' 'lib/cctbx_sgtbx_ext.so.0'->'lib/cctbx_sgtbx_ext.so.0.0.1' 'lib/cctbx_sgtbx_ext.so'->'lib/cctbx_sgtbx_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1' 'lib/cctbx_eltbx_chemical_elements_ext.so.0'->'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1' 'lib/cctbx_eltbx_chemical_elements_ext.so'->'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_fp_fdp_ext.so.0 cctbx/eltbx/boost_python/fp_fdp_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm g++ -o lib/cctbx_math_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_math_ext.so.0 cctbx/math/boost_python/math_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1' 'lib/cctbx_eltbx_fp_fdp_ext.so.0'->'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1' 'lib/cctbx_eltbx_fp_fdp_ext.so'->'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1' g++ -o lib/dxtbx_model_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_model_ext.so.0 dxtbx/src/dxtbx/model/boost_python/beam.o dxtbx/src/dxtbx/model/boost_python/spectrum.o dxtbx/src/dxtbx/model/boost_python/goniometer.o dxtbx/src/dxtbx/model/boost_python/kappa_goniometer.o dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.o dxtbx/src/dxtbx/model/boost_python/panel.o dxtbx/src/dxtbx/model/boost_python/detector.o dxtbx/src/dxtbx/model/boost_python/scan.o dxtbx/src/dxtbx/model/boost_python/scan_helpers.o dxtbx/src/dxtbx/model/boost_python/crystal.o dxtbx/src/dxtbx/model/boost_python/parallax_correction.o dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.o dxtbx/src/dxtbx/model/boost_python/history.o dxtbx/src/dxtbx/model/boost_python/experiment.o dxtbx/src/dxtbx/model/boost_python/experiment_list.o dxtbx/src/dxtbx/model/boost_python/model_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/usr/lib -lm -ltiff -lboost_python315 -lcbf -lboost_thread -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python315 -lcbf -lhdf5_serial Create symlinks for: 'lib/cctbx_math_ext.so.0.0.1' 'lib/cctbx_math_ext.so.0'->'lib/cctbx_math_ext.so.0.0.1' 'lib/cctbx_math_ext.so'->'lib/cctbx_math_ext.so.0.0.1' g++ -o lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_maptbx_bcr_bcr_ext.so.0 cctbx/maptbx/bcr/bcr_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/cctbx_adp_restraints_ext.so.0.0.1' 'lib/cctbx_adp_restraints_ext.so.0'->'lib/cctbx_adp_restraints_ext.so.0.0.1' 'lib/cctbx_adp_restraints_ext.so'->'lib/cctbx_adp_restraints_ext.so.0.0.1' g++ -o lib/gltbx_gl_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_gl_ext.so.0 gltbx/gl_ext.o gltbx/gl_defines_00_bpl.o gltbx/gl_defines_01_bpl.o gltbx/gl_defines_02_bpl.o gltbx/gl_defines_03_bpl.o gltbx/gl_defines_04_bpl.o gltbx/gl_defines_05_bpl.o gltbx/gl_defines_06_bpl.o gltbx/gl_defines_07_bpl.o gltbx/gl_functions_00_bpl.o gltbx/gl_functions_01_bpl.o gltbx/gl_functions_02_bpl.o gltbx/gl_functions_03_bpl.o gltbx/gl_functions_04_bpl.o gltbx/gl_functions_05_bpl.o gltbx/gl_functions_06_bpl.o gltbx/gl_functions_07_bpl.o gltbx/gl_functions_08_bpl.o gltbx/gl_functions_09_bpl.o gltbx/gl_functions_10_bpl.o gltbx/gl_functions_11_bpl.o gltbx/gl_functions_12_bpl.o gltbx/gl_functions_13_bpl.o gltbx/gl_functions_14_bpl.o gltbx/gl_functions_15_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lGLU -lGL -lm Create symlinks for: 'lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1' 'lib/cctbx_maptbx_bcr_bcr_ext.so.0'->'lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1' 'lib/cctbx_maptbx_bcr_bcr_ext.so'->'lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1' g++ -o lib/cctbx_asymmetric_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_asymmetric_map_ext.so.0 cctbx/maptbx/asymmetric_map_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lasymmetric_map -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/cctbx_asymmetric_map_ext.so.0.0.1' 'lib/cctbx_asymmetric_map_ext.so.0'->'lib/cctbx_asymmetric_map_ext.so.0.0.1' 'lib/cctbx_asymmetric_map_ext.so'->'lib/cctbx_asymmetric_map_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_sasaki_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_sasaki_ext.so.0 cctbx/eltbx/boost_python/sasaki_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/gltbx_gl_ext.so.0.0.1' 'lib/gltbx_gl_ext.so.0'->'lib/gltbx_gl_ext.so.0.0.1' 'lib/gltbx_gl_ext.so'->'lib/gltbx_gl_ext.so.0.0.1' g++ -o lib/dxtbx_imageset_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_imageset_ext.so.0 dxtbx/src/dxtbx/boost_python/imageset_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/usr/lib -lm -ltiff -lboost_python315 -lcbf -lhdf5_serial -lboost_thread -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python315 -lcbf -lhdf5_serial Create symlinks for: 'lib/cctbx_eltbx_sasaki_ext.so.0.0.1' 'lib/cctbx_eltbx_sasaki_ext.so.0'->'lib/cctbx_eltbx_sasaki_ext.so.0.0.1' 'lib/cctbx_eltbx_sasaki_ext.so'->'lib/cctbx_eltbx_sasaki_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_wavelengths_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_wavelengths_ext.so.0 cctbx/eltbx/boost_python/wavelengths_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1' 'lib/cctbx_eltbx_wavelengths_ext.so.0'->'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1' 'lib/cctbx_eltbx_wavelengths_ext.so'->'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1' g++ -o lib/cctbx_sgtbx_asu_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_sgtbx_asu_ext.so.0 cctbx/sgtbx/direct_space_asu/proto/asu_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/cctbx_crystal_ext.so.0.0.1' 'lib/cctbx_crystal_ext.so.0'->'lib/cctbx_crystal_ext.so.0.0.1' 'lib/cctbx_crystal_ext.so'->'lib/cctbx_crystal_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_covalent_radii_ext.so.0 cctbx/eltbx/boost_python/covalent_radii_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_covalent_radii_ext.so.0'->'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_covalent_radii_ext.so'->'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1' g++ -o lib/cctbx_merging_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_merging_ext.so.0 cctbx/merging/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/cctbx_sgtbx_asu_ext.so.0.0.1' 'lib/cctbx_sgtbx_asu_ext.so.0'->'lib/cctbx_sgtbx_asu_ext.so.0.0.1' 'lib/cctbx_sgtbx_asu_ext.so'->'lib/cctbx_sgtbx_asu_ext.so.0.0.1' g++ -o lib/cctbx_uctbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_uctbx_ext.so.0 cctbx/uctbx/boost_python/uctbx_ext.o cctbx/uctbx/boost_python/fast_minimum_reduction.o cctbx/uctbx/boost_python/niggli_reduction.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/cctbx_merging_ext.so.0.0.1' 'lib/cctbx_merging_ext.so.0'->'lib/cctbx_merging_ext.so.0.0.1' 'lib/cctbx_merging_ext.so'->'lib/cctbx_merging_ext.so.0.0.1' g++ -o lib/cctbx_masks_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_masks_ext.so.0 cctbx/masks/boost_python/masks_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/cctbx_masks_ext.so.0.0.1' 'lib/cctbx_masks_ext.so.0'->'lib/cctbx_masks_ext.so.0.0.1' 'lib/cctbx_masks_ext.so'->'lib/cctbx_masks_ext.so.0.0.1' g++ -o lib/iotbx_scalepack_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_scalepack_ext.so.0 iotbx/misc/boost_python/scalepack_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/iotbx_scalepack_ext.so.0.0.1' 'lib/iotbx_scalepack_ext.so.0'->'lib/iotbx_scalepack_ext.so.0.0.1' 'lib/iotbx_scalepack_ext.so'->'lib/iotbx_scalepack_ext.so.0.0.1' g++ -o lib/iotbx_shelx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_shelx_ext.so.0 iotbx/shelx/shelx_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/cctbx_uctbx_ext.so.0.0.1' 'lib/cctbx_uctbx_ext.so.0'->'lib/cctbx_uctbx_ext.so.0.0.1' 'lib/cctbx_uctbx_ext.so'->'lib/cctbx_uctbx_ext.so.0.0.1' g++ -o lib/iotbx_wildcard_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_wildcard_ext.so.0 iotbx/wildcard_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/dxtbx_masking_ext.so.0.0.1' 'lib/dxtbx_masking_ext.so.0'->'lib/dxtbx_masking_ext.so.0.0.1' 'lib/dxtbx_masking_ext.so'->'lib/dxtbx_masking_ext.so.0.0.1' Create symlinks for: 'lib/iotbx_wildcard_ext.so.0.0.1' 'lib/iotbx_wildcard_ext.so.0'->'lib/iotbx_wildcard_ext.so.0.0.1' 'lib/iotbx_wildcard_ext.so'->'lib/iotbx_wildcard_ext.so.0.0.1' g++ -o lib/iotbx_xplor_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_xplor_ext.so.0 iotbx/xplor/boost_python/xplor_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -liotbx_xplor -lcctbx -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/iotbx_shelx_ext.so.0.0.1' 'lib/iotbx_shelx_ext.so.0'->'lib/iotbx_shelx_ext.so.0.0.1' 'lib/iotbx_shelx_ext.so'->'lib/iotbx_shelx_ext.so.0.0.1' g++ -o spotfinder/dxtbx_toolbox/libdistl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/dxtbx_toolbox/libdistl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/dxtbx_toolbox/distl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/dxtbx_toolbox/distl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/iotbx_xplor_ext.so.0.0.1' 'lib/iotbx_xplor_ext.so.0'->'lib/iotbx_xplor_ext.so.0.0.1' 'lib/iotbx_xplor_ext.so'->'lib/iotbx_xplor_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/spot.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/spot.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/core_toolbox/libdistl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/libdistl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/cctbx_maptbx_ext.so.0.0.1' 'lib/cctbx_maptbx_ext.so.0'->'lib/cctbx_maptbx_ext.so.0.0.1' 'lib/cctbx_maptbx_ext.so'->'lib/cctbx_maptbx_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/hough.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/hough.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/core_toolbox/distl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/distl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/dxtbx_model_ext.so.0.0.1' 'lib/dxtbx_model_ext.so.0'->'lib/dxtbx_model_ext.so.0.0.1' 'lib/dxtbx_model_ext.so'->'lib/dxtbx_model_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/spotfilter.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/spotfilter.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/cctbx_geometry_restraints_ext.so.0.0.1' 'lib/cctbx_geometry_restraints_ext.so.0'->'lib/cctbx_geometry_restraints_ext.so.0.0.1' 'lib/cctbx_geometry_restraints_ext.so'->'lib/cctbx_geometry_restraints_ext.so.0.0.1' g++ -o mmtbx/masks/atom_mask.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/masks/atom_mask.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/iotbx_pdb_hierarchy_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_pdb_hierarchy_ext.so.0 iotbx/pdb/hierarchy_ext.o iotbx/pdb/hierarchy_atom_bpl.o iotbx/pdb/hierarchy_atoms_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm g++ -o mmtbx/tls/decompose.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/tls/decompose.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/dps_core/dps_core.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/dps_core/dps_core.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/dps_core/directional_fft.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/dps_core/directional_fft.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/dps_core/direction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/dps_core/direction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/iotbx_pdb_hierarchy_ext.so.0.0.1' 'lib/iotbx_pdb_hierarchy_ext.so.0'->'lib/iotbx_pdb_hierarchy_ext.so.0.0.1' 'lib/iotbx_pdb_hierarchy_ext.so'->'lib/iotbx_pdb_hierarchy_ext.so.0.0.1' g++ -o rstbx/indexing_api/indexing_api.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/indexing_api.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libspotfinder.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libspotfinder.so.0 spotfinder/core_toolbox/spot.o spotfinder/core_toolbox/libdistl.o spotfinder/core_toolbox/hough.o spotfinder/core_toolbox/distl.o spotfinder/core_toolbox/spotfilter.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lann-cctbx -lomptbx -lm Create symlinks for: 'lib/libspotfinder.so.0.0.1' 'lib/libspotfinder.so.0'->'lib/libspotfinder.so.0.0.1' 'lib/libspotfinder.so'->'lib/libspotfinder.so.0.0.1' Create symlinks for: 'lib/dxtbx_imageset_ext.so.0.0.1' 'lib/dxtbx_imageset_ext.so.0'->'lib/dxtbx_imageset_ext.so.0.0.1' 'lib/dxtbx_imageset_ext.so'->'lib/dxtbx_imageset_ext.so.0.0.1' g++ -o lib/libdxtbxspotfinder.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libdxtbxspotfinder.so.0 spotfinder/dxtbx_toolbox/libdistl.o spotfinder/dxtbx_toolbox/distl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lspotfinder -lann-cctbx -lomptbx -lm g++ -o rstbx/diffraction/ewald_sphere.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/ewald_sphere.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/libdxtbxspotfinder.so.0.0.1' 'lib/libdxtbxspotfinder.so.0'->'lib/libdxtbxspotfinder.so.0.0.1' 'lib/libdxtbxspotfinder.so'->'lib/libdxtbxspotfinder.so.0.0.1' g++ -o rstbx/diffraction/partial_spot_position_partial_H.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/partial_spot_position_partial_H.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libmmtbx_tls.so.0.0.1 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread -shared -Wl,-z,relro -lhdf5_serial -Wl,-soname=libmmtbx_tls.so.0 mmtbx/tls/decompose.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lm Create symlinks for: 'lib/libmmtbx_tls.so.0.0.1' 'lib/libmmtbx_tls.so.0'->'lib/libmmtbx_tls.so.0.0.1' 'lib/libmmtbx_tls.so'->'lib/libmmtbx_tls.so.0.0.1' g++ -o scitbx/minpack/raw.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/minpack/raw.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ gcc -o scitbx/slatec/lib_c.o -c -std=gnu17 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/slatec/lib_c.c g++ -o smtbx/refinement/constraints/affine.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/affine.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libscitbx_slatec.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libscitbx_slatec.so.0 scitbx/slatec/lib_c.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lm Create symlinks for: 'lib/libscitbx_slatec.so.0.0.1' 'lib/libscitbx_slatec.so.0'->'lib/libscitbx_slatec.so.0.0.1' 'lib/libscitbx_slatec.so'->'lib/libscitbx_slatec.so.0.0.1' g++ -o smtbx/refinement/constraints/geometrical_hydrogens.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/geometrical_hydrogens.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libscitbx_minpack.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libscitbx_minpack.so.0 scitbx/minpack/raw.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lm Create symlinks for: 'lib/libscitbx_minpack.so.0.0.1' 'lib/libscitbx_minpack.so.0'->'lib/libscitbx_minpack.so.0.0.1' 'lib/libscitbx_minpack.so'->'lib/libscitbx_minpack.so.0.0.1' g++ -o smtbx/refinement/constraints/occupancy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/occupancy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/reparametrisation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/reparametrisation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/rigid.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/rigid.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/same_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/same_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/librstbx.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=librstbx.so.0 rstbx/dps_core/dps_core.o rstbx/dps_core/directional_fft.o rstbx/dps_core/direction.o rstbx/indexing_api/indexing_api.o rstbx/diffraction/ewald_sphere.o rstbx/diffraction/partial_spot_position_partial_H.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lcctbx -lm Create symlinks for: 'lib/librstbx.so.0.0.1' 'lib/librstbx.so.0'->'lib/librstbx.so.0.0.1' 'lib/librstbx.so'->'lib/librstbx.so.0.0.1' g++ -o smtbx/refinement/constraints/scaled_adp.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/scaled_adp.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/shared.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/shared.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/special_position.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/special_position.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/symmetry_equivalent.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/symmetry_equivalent.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/u_eq_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/u_eq_dependent_u_iso.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/u_iso_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/u_iso_dependent_u_iso.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/data_model.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/data_model.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/tokenizer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/tokenizer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/numeric.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/numeric.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/alignment/alignment_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/alignment/alignment_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/building/loop_closure/ccd_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/building/loop_closure/ccd_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/bulk_solvent/bulk_solvent_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/bulk_solvent/bulk_solvent_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/bulk_solvent/bulk_solvent.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/bulk_solvent/bulk_solvent.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libxcif.so.0.0.1 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread -shared -Wl,-z,relro -lhdf5_serial -Wl,-soname=libxcif.so.0 xcif/data_model.o xcif/tokenizer.o xcif/numeric.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread Create symlinks for: 'lib/libxcif.so.0.0.1' 'lib/libxcif.so.0'->'lib/libxcif.so.0.0.1' 'lib/libxcif.so'->'lib/libxcif.so.0.0.1' g++ -o mmtbx/den/boost_python/den_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/den/boost_python/den_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/secondary_structure/dssp_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/secondary_structure/dssp_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libsmtbx_refinement_constraints.so.0.0.1 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread -shared -Wl,-z,relro -lhdf5_serial -Wl,-soname=libsmtbx_refinement_constraints.so.0 smtbx/refinement/constraints/affine.o smtbx/refinement/constraints/geometrical_hydrogens.o smtbx/refinement/constraints/occupancy.o smtbx/refinement/constraints/reparametrisation.o smtbx/refinement/constraints/rigid.o smtbx/refinement/constraints/same_group.o smtbx/refinement/constraints/scaled_adp.o smtbx/refinement/constraints/shared.o smtbx/refinement/constraints/special_position.o smtbx/refinement/constraints/symmetry_equivalent.o smtbx/refinement/constraints/u_eq_dependent_u_iso.o smtbx/refinement/constraints/u_iso_dependent_u_iso.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o lib/libmmtbx_masks.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libmmtbx_masks.so.0 mmtbx/masks/atom_mask.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lomptbx -lcctbx_sgtbx_asu -lm Create symlinks for: 'lib/libsmtbx_refinement_constraints.so.0.0.1' 'lib/libsmtbx_refinement_constraints.so.0'->'lib/libsmtbx_refinement_constraints.so.0.0.1' 'lib/libsmtbx_refinement_constraints.so'->'lib/libsmtbx_refinement_constraints.so.0.0.1' g++ -o mmtbx/dynamics/dynamics_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/dynamics/dynamics_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/libmmtbx_masks.so.0.0.1' 'lib/libmmtbx_masks.so.0'->'lib/libmmtbx_masks.so.0.0.1' 'lib/libmmtbx_masks.so'->'lib/libmmtbx_masks.so.0.0.1' g++ -o mmtbx/dynamics/dynamics.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/dynamics/dynamics.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/f_model/f_model_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/f_model/f_model_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/geometry/boost_python/asa_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/asa_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/den/den.h:2, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/den/boost_python/den_ext.cpp:12: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensor_rank_2.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = mmtbx::den::den_simple_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/den/boost_python/den_ext.cpp:53:78: required from here 53 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 54 | "shared_den_simple_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o lib/mmtbx_dssp_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_dssp_ext.so.0 mmtbx/secondary_structure/dssp_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/mmtbx_dssp_ext.so.0.0.1' 'lib/mmtbx_dssp_ext.so.0'->'lib/mmtbx_dssp_ext.so.0.0.1' 'lib/mmtbx_dssp_ext.so'->'lib/mmtbx_dssp_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/clash_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/clash_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_alignment_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_alignment_ext.so.0 mmtbx/alignment/alignment_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/mmtbx_alignment_ext.so.0.0.1' 'lib/mmtbx_alignment_ext.so.0'->'lib/mmtbx_alignment_ext.so.0.0.1' 'lib/mmtbx_alignment_ext.so'->'lib/mmtbx_alignment_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/indexing_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/indexing_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_dynamics_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_dynamics_ext.so.0 mmtbx/dynamics/dynamics_ext.o mmtbx/dynamics/dynamics.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/mmtbx_dynamics_ext.so.0.0.1' 'lib/mmtbx_dynamics_ext.so.0'->'lib/mmtbx_dynamics_ext.so.0.0.1' 'lib/mmtbx_dynamics_ext.so'->'lib/mmtbx_dynamics_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/primitive_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/primitive_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/asa_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o lib/mmtbx_building_loop_closure_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_building_loop_closure_ext.so.0 mmtbx/building/loop_closure/ccd_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -liotbx_pdb -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/mmtbx_building_loop_closure_ext.so.0.0.1' 'lib/mmtbx_building_loop_closure_ext.so.0'->'lib/mmtbx_building_loop_closure_ext.so.0.0.1' 'lib/mmtbx_building_loop_closure_ext.so'->'lib/mmtbx_building_loop_closure_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/shared_types_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/shared_types_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/clash_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/extract.hpp:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/indexing_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/shared_types_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o lib/mmtbx_den_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_den_restraints_ext.so.0 mmtbx/den/boost_python/den_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/mmtbx_den_restraints_ext.so.0.0.1' 'lib/mmtbx_den_restraints_ext.so.0'->'lib/mmtbx_den_restraints_ext.so.0.0.1' 'lib/mmtbx_den_restraints_ext.so'->'lib/mmtbx_den_restraints_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/sphere_surface_sampling_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/sphere_surface_sampling_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_primitive_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_primitive_ext.so.0 mmtbx/geometry/boost_python/primitive_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/mmtbx_geometry_primitive_ext.so.0.0.1' 'lib/mmtbx_geometry_primitive_ext.so.0'->'lib/mmtbx_geometry_primitive_ext.so.0.0.1' 'lib/mmtbx_geometry_primitive_ext.so'->'lib/mmtbx_geometry_primitive_ext.so.0.0.1' g++ -o mmtbx/hydrogens/hydrogens_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/hydrogens/hydrogens_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_f_model_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_f_model_ext.so.0 mmtbx/f_model/f_model_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm g++ -o lib/mmtbx_geometry_shared_types_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_shared_types_ext.so.0 mmtbx/geometry/boost_python/shared_types_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/mmtbx_f_model_ext.so.0.0.1' 'lib/mmtbx_f_model_ext.so.0'->'lib/mmtbx_f_model_ext.so.0.0.1' 'lib/mmtbx_f_model_ext.so'->'lib/mmtbx_f_model_ext.so.0.0.1' g++ -o mmtbx/masks/masks_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/masks/masks_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_geometry_shared_types_ext.so.0.0.1' 'lib/mmtbx_geometry_shared_types_ext.so.0'->'lib/mmtbx_geometry_shared_types_ext.so.0.0.1' 'lib/mmtbx_geometry_shared_types_ext.so'->'lib/mmtbx_geometry_shared_types_ext.so.0.0.1' g++ -o mmtbx/max_lik/max_lik_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/max_lik/max_lik_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_sphere_surface_sampling_ext.so.0 mmtbx/geometry/boost_python/sphere_surface_sampling_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1' 'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0'->'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1' 'lib/mmtbx_geometry_sphere_surface_sampling_ext.so'->'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1' g++ -o mmtbx/max_lik/max_lik.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/max_lik/max_lik.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_bulk_solvent_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_bulk_solvent_ext.so.0 mmtbx/bulk_solvent/bulk_solvent_ext.o mmtbx/bulk_solvent/bulk_solvent.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm g++ -o lib/mmtbx_hydrogens_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_hydrogens_ext.so.0 mmtbx/hydrogens/hydrogens_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/mmtbx_hydrogens_ext.so.0.0.1' 'lib/mmtbx_hydrogens_ext.so.0'->'lib/mmtbx_hydrogens_ext.so.0.0.1' 'lib/mmtbx_hydrogens_ext.so'->'lib/mmtbx_hydrogens_ext.so.0.0.1' g++ -o mmtbx/bulk_solvent/mosaic_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/bulk_solvent/mosaic_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_bulk_solvent_ext.so.0.0.1' 'lib/mmtbx_bulk_solvent_ext.so.0'->'lib/mmtbx_bulk_solvent_ext.so.0.0.1' 'lib/mmtbx_bulk_solvent_ext.so'->'lib/mmtbx_bulk_solvent_ext.so.0.0.1' g++ -o mmtbx/ncs/cartesian_restraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/ncs/cartesian_restraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_indexing_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_indexing_ext.so.0 mmtbx/geometry/boost_python/indexing_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm g++ -o mmtbx/ncs/tncs_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/ncs/tncs_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_geometry_indexing_ext.so.0.0.1' 'lib/mmtbx_geometry_indexing_ext.so.0'->'lib/mmtbx_geometry_indexing_ext.so.0.0.1' 'lib/mmtbx_geometry_indexing_ext.so'->'lib/mmtbx_geometry_indexing_ext.so.0.0.1' g++ -o mmtbx/pair_interaction/interaction_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/pair_interaction/interaction_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_masks_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_masks_ext.so.0 mmtbx/masks/masks_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lmmtbx_masks -lcctbx_sgtbx_asu -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/mmtbx_masks_ext.so.0.0.1' 'lib/mmtbx_masks_ext.so.0'->'lib/mmtbx_masks_ext.so.0.0.1' 'lib/mmtbx_masks_ext.so'->'lib/mmtbx_masks_ext.so.0.0.1' g++ -o mmtbx/probe/boost_python/probe_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/probe/boost_python/probe_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_clash_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_clash_ext.so.0 mmtbx/geometry/boost_python/clash_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/mmtbx_geometry_clash_ext.so.0.0.1' 'lib/mmtbx_geometry_clash_ext.so.0'->'lib/mmtbx_geometry_clash_ext.so.0.0.1' 'lib/mmtbx_geometry_clash_ext.so'->'lib/mmtbx_geometry_clash_ext.so.0.0.1' g++ -o mmtbx/probe/Scoring.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/probe/Scoring.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_max_lik_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_max_lik_ext.so.0 mmtbx/max_lik/max_lik_ext.o mmtbx/max_lik/max_lik.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/mmtbx_max_lik_ext.so.0.0.1' 'lib/mmtbx_max_lik_ext.so.0'->'lib/mmtbx_max_lik_ext.so.0.0.1' 'lib/mmtbx_max_lik_ext.so'->'lib/mmtbx_max_lik_ext.so.0.0.1' g++ -o mmtbx/probe/DotSpheres.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/probe/DotSpheres.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_ncs_cartesian_restraints_ext.so.0 mmtbx/ncs/cartesian_restraints_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1' 'lib/mmtbx_ncs_cartesian_restraints_ext.so.0'->'lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1' 'lib/mmtbx_ncs_cartesian_restraints_ext.so'->'lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1' g++ -o mmtbx/probe/SpatialQuery.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/probe/SpatialQuery.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_mosaic_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_mosaic_ext.so.0 mmtbx/bulk_solvent/mosaic_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/mmtbx_mosaic_ext.so.0.0.1' 'lib/mmtbx_mosaic_ext.so.0'->'lib/mmtbx_mosaic_ext.so.0.0.1' 'lib/mmtbx_mosaic_ext.so'->'lib/mmtbx_mosaic_ext.so.0.0.1' g++ -o mmtbx/geometry_restraints/boost_python/ramachandran_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/boost_python/ramachandran_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/reduce/boost_python/reduce_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/reduce/boost_python/reduce_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/restraints.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/dihedral.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/ramachandran.h:10, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/boost_python/ramachandran_ext.cpp:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i mmtbx::geometry_restraints::target_phi_psi(const scitbx::af::const_ref, scitbx::af::trivial_accessor>&, const scitbx::af::const_ref, scitbx::af::trivial_accessor>&, const phi_psi_proxy&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/ramachandran.h:314:35: required from here 314 | r = target_phi_psi(general_table, sites_cart, proxy);} | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/ramachandran.h:269:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref, scitbx::af::trivial_accessor>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 269 | for(int i=0; i, scitbx::af::trivial_accessor>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 284 | for(int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/format/parsing.hpp:21, from /usr/include/boost/format.hpp:50, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/dihedral.h:8: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = mmtbx::geometry_restraints::phi_psi_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/boost_python/ramachandran_ext.cpp:52:75: required from here 52 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 53 | "shared_phi_psi_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o lib/mmtbx_ncs_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_ncs_ext.so.0 mmtbx/ncs/tncs_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/mmtbx_ncs_ext.so.0.0.1' 'lib/mmtbx_ncs_ext.so.0'->'lib/mmtbx_ncs_ext.so.0.0.1' 'lib/mmtbx_ncs_ext.so'->'lib/mmtbx_ncs_ext.so.0.0.1' g++ -o mmtbx/reduce/InteractionGraph.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/reduce/InteractionGraph.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ ar rc probe/lib/libprobelib.a mmtbx/probe/Scoring.o mmtbx/probe/DotSpheres.o mmtbx/probe/SpatialQuery.o ranlib probe/lib/libprobelib.a g++ -o mmtbx/reduce/Optimizers.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/reduce/Optimizers.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_asa_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_asa_ext.so.0 mmtbx/geometry/boost_python/asa_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm g++ -o lib/mmtbx_pair_interaction_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_pair_interaction_ext.so.0 mmtbx/pair_interaction/interaction_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/mmtbx_pair_interaction_ext.so.0.0.1' 'lib/mmtbx_pair_interaction_ext.so.0'->'lib/mmtbx_pair_interaction_ext.so.0.0.1' 'lib/mmtbx_pair_interaction_ext.so'->'lib/mmtbx_pair_interaction_ext.so.0.0.1' g++ -o mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/rotamer/fit_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/rotamer/fit_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_geometry_asa_ext.so.0.0.1' 'lib/mmtbx_geometry_asa_ext.so.0'->'lib/mmtbx_geometry_asa_ext.so.0.0.1' 'lib/mmtbx_geometry_asa_ext.so'->'lib/mmtbx_geometry_asa_ext.so.0.0.1' g++ -o mmtbx/rsr/rsr_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/rsr/rsr_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/reference_coordinate.h:2, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp:13: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i cctbx::geometry_restraints::shared_proxy_remove(const scitbx::af::const_ref&, const scitbx::af::const_ref&) [with ProxyType = mmtbx::geometry_restraints::reference_coordinate_proxy]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp:80:41: required from here 80 | cctbx::geometry_restraints::shared_proxy_remove, ( | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/proxy_select.h:187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 187 | if (match_ctr != i_seqs.size()) { | ~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensor_rank_2.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = mmtbx::geometry_restraints::reference_coordinate_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp:61:25: required from here 61 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 62 | "shared_reference_coordinate_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o mmtbx/scaling/scaling_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/scaling/scaling_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_ramachandran_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_ramachandran_restraints_ext.so.0 mmtbx/geometry_restraints/boost_python/ramachandran_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/mmtbx_ramachandran_restraints_ext.so.0.0.1' 'lib/mmtbx_ramachandran_restraints_ext.so.0'->'lib/mmtbx_ramachandran_restraints_ext.so.0.0.1' 'lib/mmtbx_ramachandran_restraints_ext.so'->'lib/mmtbx_ramachandran_restraints_ext.so.0.0.1' g++ -o mmtbx/scaling/twinning_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/scaling/twinning_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_probe_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_probe_ext.so.0 mmtbx/probe/boost_python/probe_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Lprobe/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/probe/lib -lprobelib -liotbx_pdb -lcctbx -lscitbx_boost_python -lscitbx_boost_python -lboost_thread -lboost_python315 -lm g++ -o lib/mmtbx_rsr_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_rsr_ext.so.0 mmtbx/rsr/rsr_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/mmtbx_rsr_ext.so.0.0.1' 'lib/mmtbx_rsr_ext.so.0'->'lib/mmtbx_rsr_ext.so.0.0.1' 'lib/mmtbx_rsr_ext.so'->'lib/mmtbx_rsr_ext.so.0.0.1' g++ -o mmtbx/scaling/relative_scaling_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/scaling/relative_scaling_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_probe_ext.so.0.0.1' 'lib/mmtbx_probe_ext.so.0'->'lib/mmtbx_probe_ext.so.0.0.1' 'lib/mmtbx_probe_ext.so'->'lib/mmtbx_probe_ext.so.0.0.1' g++ -o mmtbx/scaling/outlier_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/scaling/outlier_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_rotamer_fit_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_rotamer_fit_ext.so.0 mmtbx/rotamer/fit_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/mmtbx_rotamer_fit_ext.so.0.0.1' 'lib/mmtbx_rotamer_fit_ext.so.0'->'lib/mmtbx_rotamer_fit_ext.so.0.0.1' 'lib/mmtbx_rotamer_fit_ext.so'->'lib/mmtbx_rotamer_fit_ext.so.0.0.1' g++ -o mmtbx/secondary_structure/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/secondary_structure/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_reference_coordinate_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_reference_coordinate_ext.so.0 mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/mmtbx_reference_coordinate_ext.so.0.0.1' 'lib/mmtbx_reference_coordinate_ext.so.0'->'lib/mmtbx_reference_coordinate_ext.so.0.0.1' 'lib/mmtbx_reference_coordinate_ext.so'->'lib/mmtbx_reference_coordinate_ext.so.0.0.1' g++ -o mmtbx/tls/decompose_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/tls/decompose_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ ar rc reduce/lib/libreduce2lib.a mmtbx/reduce/PositionReturn.o mmtbx/reduce/InteractionGraph.o mmtbx/reduce/Optimizers.o ranlib reduce/lib/libreduce2lib.a g++ -o mmtbx/tls/tls_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/tls/tls_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/tls/optimise_amplitudes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/tls/optimise_amplitudes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_secondary_structure_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_secondary_structure_ext.so.0 mmtbx/secondary_structure/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/mmtbx_secondary_structure_ext.so.0.0.1' 'lib/mmtbx_secondary_structure_ext.so.0'->'lib/mmtbx_secondary_structure_ext.so.0.0.1' 'lib/mmtbx_secondary_structure_ext.so'->'lib/mmtbx_secondary_structure_ext.so.0.0.1' g++ -o mmtbx/tls/optimise_amplitudes_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/tls/optimise_amplitudes_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_tls_decompose_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_decompose_ext.so.0 mmtbx/tls/decompose_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/mmtbx_tls_decompose_ext.so.0.0.1' 'lib/mmtbx_tls_decompose_ext.so.0'->'lib/mmtbx_tls_decompose_ext.so.0.0.1' 'lib/mmtbx_tls_decompose_ext.so'->'lib/mmtbx_tls_decompose_ext.so.0.0.1' g++ -o mmtbx/tls/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/tls/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/tls/utils_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/tls/utils_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/utils/utils_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/utils/utils_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_optimise_amplitudes_ext.so.0 mmtbx/tls/optimise_amplitudes.o mmtbx/tls/optimise_amplitudes_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1' 'lib/mmtbx_tls_optimise_amplitudes_ext.so.0'->'lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1' 'lib/mmtbx_tls_optimise_amplitudes_ext.so'->'lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1' g++ -o mmtbx/validation/ramachandran/rama_eval_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/validation/ramachandran/rama_eval_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_reduce_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_reduce_ext.so.0 mmtbx/reduce/boost_python/reduce_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Lreduce/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/reduce/lib -Lprobe/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/probe/lib -lreduce2lib -lprobelib -liotbx_pdb -lcctbx -lscitbx_boost_python -lscitbx_boost_python -lboost_thread -lboost_python315 -lm g++ -o omptbx/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/omptbx/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_scaling_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_scaling_ext.so.0 mmtbx/scaling/scaling_ext.o mmtbx/scaling/twinning_bpl.o mmtbx/scaling/relative_scaling_bpl.o mmtbx/scaling/outlier_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm g++ -o rstbx/array_family/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/array_family/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/array_family/flex_rstbx_arrays.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/array_family/flex_rstbx_arrays.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_reduce_ext.so.0.0.1' 'lib/mmtbx_reduce_ext.so.0'->'lib/mmtbx_reduce_ext.so.0.0.1' 'lib/mmtbx_reduce_ext.so'->'lib/mmtbx_reduce_ext.so.0.0.1' Create symlinks for: 'lib/mmtbx_scaling_ext.so.0.0.1' 'lib/mmtbx_scaling_ext.so.0'->'lib/mmtbx_scaling_ext.so.0.0.1' 'lib/mmtbx_scaling_ext.so'->'lib/mmtbx_scaling_ext.so.0.0.1' g++ -o rstbx/bandpass/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/bandpass/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/src -Irstbx/bandpass/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/bpcx/detector_model/detector_model_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/bpcx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bpcx/src -Irstbx/bpcx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bpcx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bpcx/detector_model/detector_model_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_validation_ramachandran_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_validation_ramachandran_ext.so.0 mmtbx/validation/ramachandran/rama_eval_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/mmtbx_validation_ramachandran_ext.so.0.0.1' 'lib/mmtbx_validation_ramachandran_ext.so.0'->'lib/mmtbx_validation_ramachandran_ext.so.0.0.1' 'lib/mmtbx_validation_ramachandran_ext.so'->'lib/mmtbx_validation_ramachandran_ext.so.0.0.1' g++ -o rstbx/bpcx/detector_model/sensor.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/bpcx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bpcx/src -Irstbx/bpcx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bpcx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bpcx/detector_model/sensor.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_utils_ext.so.0 mmtbx/utils/utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/mmtbx_utils_ext.so.0.0.1' 'lib/mmtbx_utils_ext.so.0'->'lib/mmtbx_utils_ext.so.0.0.1' 'lib/mmtbx_utils_ext.so'->'lib/mmtbx_utils_ext.so.0.0.1' g++ -o rstbx/diffraction/fastbragg/fastbragg_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/diffraction/fastbragg/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/src -Irstbx/diffraction/fastbragg/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/diffraction/fastbragg/fastbragg.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/diffraction/fastbragg/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/src -Irstbx/diffraction/fastbragg/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/omptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=omptbx_ext.so.0 omptbx/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lomptbx -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/omptbx_ext.so.0.0.1' 'lib/omptbx_ext.so.0'->'lib/omptbx_ext.so.0.0.1' 'lib/omptbx_ext.so'->'lib/omptbx_ext.so.0.0.1' g++ -o rstbx/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:10: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/parameters.h: In constructor ‘rstbx::bandpass::active_area_filter::active_area_filter(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/parameters.h:100:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i < tiles.size()/4; ++i){ | ~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/parameters.h:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/parameters.h: In member function ‘bool rstbx::bandpass::active_area_filter::operator()(rstbx::bandpass::vec3, const int&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/parameters.h:126:39: warning: comparison of integer expressions of different signedness: ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 126 | SCITBX_ASSERT( adapt.nn.size()== NEAR); | ~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/parameters.h:126:9: note: in expansion of macro ‘SCITBX_ASSERT’ 126 | SCITBX_ASSERT( adapt.nn.size()== NEAR); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/subpixel_joint_model.h: In member function ‘void rstbx::bandpass::subpixel_joint_model::set_subpixel(scitbx::af::shared, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/subpixel_joint_model.h:26:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 26 | for (int ixx=0; ixx< rotations_deg.size(); ++ixx){ | ~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/subpixel_joint_model.h:31:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 31 | for (int ixx=0; ixx< rotations_deg.size(); ++ixx){ | ~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::prescreen_indices(const double&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:46:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | for (int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared rstbx::bandpass::use_case_bp3::selected_partialities() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:93:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::picture_fast_slow()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:152:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 152 | for (int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::picture_fast_slow_force()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:296:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 296 | for (int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:462:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 462 | for ( int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::spot_rectangles(rstbx::bandpass::vec3ref)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:477:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 477 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::spot_rectregions(rstbx::bandpass::vec3ref, const double&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:511:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 511 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::enclosed_pixels() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:543:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 543 | for (int idx = 0; idx < spot_rectangle_vertices.size(); idx+=5){ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_hi_predictions() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:752:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 752 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_lo_predictions() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:763:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 763 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_predictions() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:774:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 774 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_predictions_labelit_format() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:787:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 787 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_hkls() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:802:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 802 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::restricted_to_active_areas(scitbx::af::shared, scitbx::af::shared >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:815:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 815 | for (int idx = 0; idx < active_areas.size(); idx+=4){ | ~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::set_subpixel(scitbx::af::shared, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:828:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 828 | for (int ixx=0; ixx< rotations_deg.size(); ++ixx){ //DEPRECATED | ~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In function ‘scitbx::af::shared > rstbx::bandpass::ext::use_case_bp2_picture_fast_slow(scitbx::af::shared >, const cctbx::crystal_orientation&, const scitbx::vec3&, const double&, const scitbx::vec3&, const scitbx::vec3&, const scitbx::vec3&, const scitbx::vec3&, const scitbx::vec3&, const double&, const scitbx::vec3&, const double&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:933:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 933 | for (int idx = 0; idx < indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In instantiation of ‘void rstbx::bandpass::use_case_bp3::enclosed_pixels_and_margin_pixels_detail() [with pixel_accept_policy = resolution_limited_pixel_accept_policy]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:616:87: required from here 616 | enclosed_pixels_and_margin_pixels_detail(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:631:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 631 | for (int idx = 0; idx < spot_rectangle_vertices.size(); idx+=5){ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In instantiation of ‘void rstbx::bandpass::use_case_bp3::enclosed_pixels_and_margin_pixels_detail() [with pixel_accept_policy = unlimited_pixel_accept_policy]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:620:78: required from here 620 | enclosed_pixels_and_margin_pixels_detail(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:631:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 631 | for (int idx = 0; idx < spot_rectangle_vertices.size(); idx+=5){ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::versa > rstbx::diffraction::fastbragg::detector::intdata()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:89:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int count = 0; count < raw.size(); ++count){ | ~~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:8: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::shared rstbx::diffraction::fastbragg::camera::get_wavelengths() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:133:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 133 | SCITBX_ASSERT(result.size()==dispsteps); | ~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:133:5: note: in expansion of macro ‘SCITBX_ASSERT’ 133 | SCITBX_ASSERT(result.size()==dispsteps); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘std::map, double> rstbx::diffraction::fastbragg::crystal::get_amplitude_mapping() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:176:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 176 | for (int i = 0; i < miller.size(); ++i){ | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘void rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector(const bool&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:305:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 305 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ g++ -o rstbx/indexing_api/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/indexing_api/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/src -Irstbx/indexing_api/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg_ext.cpp:10: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::versa > rstbx::diffraction::fastbragg::detector::intdata()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:89:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int count = 0; count < raw.size(); ++count){ | ~~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:8: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::shared rstbx::diffraction::fastbragg::camera::get_wavelengths() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:133:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 133 | SCITBX_ASSERT(result.size()==dispsteps); | ~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:133:5: note: in expansion of macro ‘SCITBX_ASSERT’ 133 | SCITBX_ASSERT(result.size()==dispsteps); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘std::map, double> rstbx::diffraction::fastbragg::crystal::get_amplitude_mapping() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:176:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 176 | for (int i = 0; i < miller.size(); ++i){ | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘void rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector(const bool&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:305:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 305 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In instantiation of ‘scitbx::af::shared rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector_get_indices(const bool&) [with IndexType = scitbx::vec3; MillerConversionPolicy = rstbx::diffraction::fastbragg::vec3_double_miller_index_policy]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg_ext.cpp:134:11: required from here 127 | class_("fast_bragg_simulation",init<>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | | 129 | .def("set_detector",&fast_bragg_simulation::set_detector) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("set_camera",&fast_bragg_simulation::set_camera) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("set_crystal",&fast_bragg_simulation::set_crystal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("sweep_over_detector",&fast_bragg_simulation::sweep_over_detector, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def("sweep_over_detector_float_indices",&fast_bragg_simulation::sweep_over_detector_get_indices< | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 | rstbx::diffraction::fastbragg::vec3, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 | rstbx::diffraction::fastbragg::vec3_double_miller_index_policy>, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:456:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 456 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:417:9: warning: variable ‘j_image_ptr’ set but not used [-Wunused-but-set-variable=] 417 | int j_image_ptr = 0; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:418:9: warning: variable ‘progress_pixel’ set but not used [-Wunused-but-set-variable=] 418 | int progress_pixel = 0; | ^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In instantiation of ‘scitbx::af::shared rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector_get_indices(const bool&) [with IndexType = cctbx::miller::index<>; MillerConversionPolicy = rstbx::diffraction::fastbragg::integer_miller_index_policy]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg_ext.cpp:138:11: required from here 127 | class_("fast_bragg_simulation",init<>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | | 129 | .def("set_detector",&fast_bragg_simulation::set_detector) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("set_camera",&fast_bragg_simulation::set_camera) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("set_crystal",&fast_bragg_simulation::set_crystal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("sweep_over_detector",&fast_bragg_simulation::sweep_over_detector, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def("sweep_over_detector_float_indices",&fast_bragg_simulation::sweep_over_detector_get_indices< | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 | rstbx::diffraction::fastbragg::vec3, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 | rstbx::diffraction::fastbragg::vec3_double_miller_index_policy>, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ 138 | .def("sweep_over_detector_integer_indices",&fast_bragg_simulation::sweep_over_detector_get_indices< | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | rstbx::diffraction::fastbragg::miller_t, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 | rstbx::diffraction::fastbragg::integer_miller_index_policy>, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:456:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 456 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:417:9: warning: variable ‘j_image_ptr’ set but not used [-Wunused-but-set-variable=] 417 | int j_image_ptr = 0; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:418:9: warning: variable ‘progress_pixel’ set but not used [-Wunused-but-set-variable=] 418 | int progress_pixel = 0; | ^~~~~~~~~~~~~~ g++ -o lib/mmtbx_tls_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_ext.so.0 mmtbx/tls/tls_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/mmtbx_tls_ext.so.0.0.1' 'lib/mmtbx_tls_ext.so.0'->'lib/mmtbx_tls_ext.so.0.0.1' 'lib/mmtbx_tls_ext.so'->'lib/mmtbx_tls_ext.so.0.0.1' g++ -o rstbx/apps/integration_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/apps/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/src -Irstbx/apps/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/integration_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/rstbx_bpcx_detector_model_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_bpcx_detector_model_ext.so.0 rstbx/bpcx/detector_model/detector_model_ext.o rstbx/bpcx/detector_model/sensor.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/rstbx_bpcx_detector_model_ext.so.0.0.1' 'lib/rstbx_bpcx_detector_model_ext.so.0'->'lib/rstbx_bpcx_detector_model_ext.so.0.0.1' 'lib/rstbx_bpcx_detector_model_ext.so'->'lib/rstbx_bpcx_detector_model_ext.so.0.0.1' g++ -o rstbx/simage/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/simage/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simage/src -Irstbx/simage/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simage/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simage/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/real_to_complex.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/dps_core/directional_fft.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/dps_core/dps_core.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/indexing_api.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/virtual_panel.h:28, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel_data.h:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/indexing_api.h:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp: In member function ‘void indexing_api::rayleigh_cpp::estimate_parameters_from_cdf(scitbx::af::shared, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp:59:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 59 | for (int i=0; i < x_data.size(); ++i){ | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::pdf(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp:80:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 80 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::cdf(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp:96:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 96 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::d_cdf_d_sigma(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp:113:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 113 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::gradients(scitbx::af::shared, const int&, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp:129:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 129 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp:135:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 135 | for (int i = 0; i < gradients.size(); ++i){ | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /usr/include/boost/python/scope.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:4: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/libdistl.h:81, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/distl.h:14, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/stills/simple_integration.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/integration_ext.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/detectors/scanbox.h: In member function ‘Distl::interval_list Distl::scanbox_tiling_explicit::generate_defined_x_tiles(const int&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/detectors/scanbox.h:268:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 268 | for (int tile = 0 ; tile < tile_count; ++tile){ | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/stills/simple_integration.h: In member function ‘void rstbx::integration::simple_integration::append_ISmask(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/stills/simple_integration.h:222:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 222 | for (int i=0; i < mask.size(); i+=2){ | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/stills/simple_integration.h: In member function ‘void rstbx::integration::simple_integration::positional_correction_mapping(scitbx::af::shared >, scitbx::af::shared >, const annlib_adaptbx::AnnAdaptor&, const annlib_adaptbx::AnnAdaptor&, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/stills/simple_integration.h:273:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 273 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 287 | for (int p=0; p >, scitbx::af::shared >, const annlib_adaptbx::AnnAdaptor&, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/stills/simple_integration.h:310:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 310 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 320 | for (int p=0; p > rstbx::integration::simple_integration::safe_background(const scitbx::af::flex_int&, scitbx::af::shared >, const annlib_adaptbx::AnnAdaptor&, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/stills/simple_integration.h:366:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 366 | for (int isort=0; isort >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 378 | for (int isort=0; isort >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 395 | for (int i=0; i >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 495 | for (int isort=0; isort >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 550 | for (int i=0; i >, scitbx::af::shared >, scitbx::af::shared >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/stills/simple_integration.h:575:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 575 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 631 | for (int k=0; k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 638 | for (int k=0; k >&, const scitbx::af::const_ref&, const scitbx::mat3&, double, double, int, double, scitbx::vec2, scitbx::vec2, unsigned int, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simage/image_simple.hpp:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 144 | for(int i=0;i<=point_spread;i++) { | ~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simage/image_simple.hpp:148:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 148 | for(int j=0;j<=point_spread;j++) { | ~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simage/image_simple.hpp:10: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simage/ext.cpp: In function ‘std::string rstbx::simage::ext::combine_rgb_images(const boost::python::list&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simage/ext.cpp:58:42: warning: comparison of integer expressions of different signedness: ‘boost::python::ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 58 | TBXX_ASSERT(bp::len(rgb_images[j]) == img_size); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/tbxx/error_utils.hpp:59:9: note: in definition of macro ‘TBXX_ASSERT’ 59 | if (!(condition)) { \ | ^~~~~~~~~ g++ -o lib/rstbx_bandpass_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_bandpass_ext.so.0 rstbx/bandpass/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lann-cctbx -lann_adaptor -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/rstbx_bandpass_ext.so.0.0.1' 'lib/rstbx_bandpass_ext.so.0'->'lib/rstbx_bandpass_ext.so.0.0.1' 'lib/rstbx_bandpass_ext.so'->'lib/rstbx_bandpass_ext.so.0.0.1' g++ -o rstbx/simulation/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/simulation/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/src -Irstbx/simulation/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/rstbx_diffraction_fastbragg_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_diffraction_fastbragg_ext.so.0 rstbx/diffraction/fastbragg/fastbragg_ext.o rstbx/diffraction/fastbragg/fastbragg.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/rstbx_diffraction_fastbragg_ext.so.0.0.1' 'lib/rstbx_diffraction_fastbragg_ext.so.0'->'lib/rstbx_diffraction_fastbragg_ext.so.0.0.1' 'lib/rstbx_diffraction_fastbragg_ext.so'->'lib/rstbx_diffraction_fastbragg_ext.so.0.0.1' g++ -o rstbx/symmetry/constraints/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/symmetry/constraints/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/symmetry/constraints/src -Irstbx/symmetry/constraints/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/symmetry/constraints/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/symmetry/constraints/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/rstbx_indexing_api_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_indexing_api_ext.so.0 rstbx/indexing_api/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm g++ -o lib/rstbx_simage_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_simage_ext.so.0 rstbx/simage/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/rstbx_simage_ext.so.0.0.1' 'lib/rstbx_simage_ext.so.0'->'lib/rstbx_simage_ext.so.0.0.1' 'lib/rstbx_simage_ext.so'->'lib/rstbx_simage_ext.so.0.0.1' Create symlinks for: 'lib/rstbx_indexing_api_ext.so.0.0.1' 'lib/rstbx_indexing_api_ext.so.0'->'lib/rstbx_indexing_api_ext.so.0.0.1' 'lib/rstbx_indexing_api_ext.so'->'lib/rstbx_indexing_api_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_grid.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_grid.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/ext.cpp:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/sim_xfel1.h: In member function ‘scitbx::af::shared rstbx::xfel1::select_proximal_indices(const int&, const double&, const double&, const cctbx::crystal_orientation&, const double&, const double&, const double&, const double&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/sim_xfel1.h:113:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 113 | for (int x = 0; x < indices_all.size(); ++x){ | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/sim_xfel1.h: In member function ‘scitbx::af::versa > rstbx::xfel1::raw_diffraction(scitbx::af::shared, scitbx::af::versa >, const size_t&, const double&, const double&, const double&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/sim_xfel1.h:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 178 | for (int mcount=0; mcount::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 230 | for (int isel = 0; isel < selected.size(); ++isel){ | ~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/sim_xfel1.h:231:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 231 | for (int imos = 0; imos < mosaic_perturbations.size(); ++imos){ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o lib/mmtbx_tls_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_utils_ext.so.0 mmtbx/tls/utils.o mmtbx/tls/utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm g++ -o lib/rstbx_integration_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_integration_ext.so.0 rstbx/apps/integration_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lann-cctbx -lann_adaptor -lspotfinder -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/rstbx_integration_ext.so.0.0.1' 'lib/rstbx_integration_ext.so.0'->'lib/rstbx_integration_ext.so.0.0.1' 'lib/rstbx_integration_ext.so'->'lib/rstbx_integration_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_bool.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_tls_utils_ext.so.0.0.1' 'lib/mmtbx_tls_utils_ext.so.0'->'lib/mmtbx_tls_utils_ext.so.0.0.1' 'lib/mmtbx_tls_utils_ext.so'->'lib/mmtbx_tls_utils_ext.so.0.0.1' /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp: In member function ‘const char* scitbx::af::boost_python::cost_of_m_handle_in_af_shared::operator()(unsigned int, unsigned int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:368:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 368 | for(int n=0; n < n_repeats; ++n) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:376:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 376 | for(int n=0; n < n_repeats; ++n) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:384:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 384 | for(int n=0; n < n_repeats; ++n) { | ~~^~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_size_t.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/selections.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:2: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/selections.h: In instantiation of ‘scitbx::af::shared scitbx::af::reindexing_array(std::size_t, const const_ref&) [with IntType = int; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:546:7: required from here 546 | reindexing_array, | ^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/selections.h:156:35: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 156 | SCITBX_ASSERT(iselection[i] < selectee_size); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/selections.h:156:7: note: in expansion of macro ‘SCITBX_ASSERT’ 156 | SCITBX_ASSERT(iselection[i] < selectee_size); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/c_grid_flex_conversions.h:10, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:10: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:85:46: required from here 85 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:86:45: required from here 86 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:87:36: required from here 87 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:88:36: required from here 88 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:89:36: required from here 89 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:90:36: required from here 90 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:91:37: required from here 91 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:92:39: required from here 92 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:93:39: required from here 93 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:94:39: required from here 94 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:95:39: required from here 95 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:96:39: required from here 96 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 2>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:97:53: required from here 97 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 3>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:98:53: required from here 98 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 4>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:99:53: required from here 99 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:101:50: required from here 101 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:102:51: required from here 102 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:103:55: required from here 103 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:104:55: required from here 104 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:105:55: required from here 105 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:106:58: required from here 106 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:107:53: required from here 107 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:108:53: required from here 108 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:109:53: required from here 109 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:111:54: required from here 111 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:113:46: required from here 113 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:114:46: required from here 114 | tuple_mapping_fixed_size >(); // scitbx/math/golay.h | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:116:49: required from here 116 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:118:50: required from here 118 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:119:50: required from here 119 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:120:50: required from here 120 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:121:50: required from here 121 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:123:53: required from here 123 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:124:53: required from here 124 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:125:53: required from here 125 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:128:51: required from here 128 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:129:52: required from here 129 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:130:42: required from here 130 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:131:42: required from here 131 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:132:45: required from here 132 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3 >]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:133:63: required from here 133 | tuple_mapping_fixed_size > >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:134:45: required from here 134 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::sym_mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::sym_mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::sym_mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::sym_mat3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:135:49: required from here 135 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:136:51: required from here 136 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:137:52: required from here 137 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:138:42: required from here 138 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:139:42: required from here 139 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:140:45: required from here 140 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:141:45: required from here 141 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::sym_mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::sym_mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::sym_mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::sym_mat2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:142:49: required from here 142 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3 >]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:144:60: required from here 144 | tuple_mapping_fixed_size > >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat3 >]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:145:60: required from here 145 | tuple_mapping_fixed_size > >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 2>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:147:54: required from here 147 | tuple_mapping_fixed_size, 2> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 3>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:148:54: required from here 148 | tuple_mapping_fixed_size, 3> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 4>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:149:54: required from here 149 | tuple_mapping_fixed_size, 4> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 2>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:150:54: required from here 150 | tuple_mapping_fixed_size, 2> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 3>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:151:54: required from here 151 | tuple_mapping_fixed_size, 3> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 4>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:152:54: required from here 152 | tuple_mapping_fixed_size, 4> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:154:64: required from here 154 | tuple_mapping_fixed_capacity(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 3>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:155:56: required from here 155 | tuple_mapping_fixed_capacity, 3> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 2>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:156:56: required from here 156 | tuple_mapping_fixed_capacity, 2> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 6>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 6>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 6>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 6>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:157:59: required from here 157 | tuple_mapping_fixed_capacity, 6> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 7>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 7>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 7>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 7>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:158:59: required from here 158 | tuple_mapping_fixed_capacity, 7> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 8>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:159:59: required from here 159 | tuple_mapping_fixed_capacity, 8> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 8>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:160:59: required from here 160 | tuple_mapping_fixed_capacity, 8> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:7, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/sim_xfel1.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h: In function ‘void scitbx::af::shared_plain::resize(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:175:15: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 175 | resize(new_size, ElementType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:175:26: note: ‘’ declared here 175 | resize(new_size, ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h: In function ‘void scitbx::af::shared_plain::resize(const size_type&) [with ElementType = cctbx::crystal_orientation]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:175:15: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 175 | resize(new_size, ElementType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const cctbx::crystal_orientation&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = cctbx::crystal_orientation]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:175:26: note: ‘’ declared here 175 | resize(new_size, ElementType()); | ^~~~~~~~~~~~~ g++ -o lib/rstbx_symmetry_constraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_symmetry_constraints_ext.so.0 rstbx/symmetry/constraints/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/rstbx_symmetry_constraints_ext.so.0.0.1' 'lib/rstbx_symmetry_constraints_ext.so.0'->'lib/rstbx_symmetry_constraints_ext.so.0.0.1' 'lib/rstbx_symmetry_constraints_ext.so'->'lib/rstbx_symmetry_constraints_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_int.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = bool]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp:429:8: required from here 429 | def("first_index", f_w::first_index_a_s, (arg("value"))); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = bool]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594, from /usr/include/c++/16/string:52, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = bool]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp:430:8: required from here 430 | def("last_index", f_w::last_index_a_s, (arg("value"))); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = bool]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 131 | def( \ | ~~~^~~ 132 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = unsigned char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 131 | def( \ | ~~~^~~ 132 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = short unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 131 | def( \ | ~~~^~~ 132 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 131 | def( \ | ~~~^~~ 132 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = bool]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = bool]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 963 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594, from /usr/include/c++/16/string:52, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 964 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = bool]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = bool]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o lib/rstbx_simulation_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_simulation_ext.so.0 rstbx/simulation/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/rstbx_simulation_ext.so.0.0.1' 'lib/rstbx_simulation_ext.so.0'->'lib/rstbx_simulation_ext.so.0.0.1' 'lib/rstbx_simulation_ext.so'->'lib/rstbx_simulation_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_float.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = unsigned char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = unsigned char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = short unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = short unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = long unsigned int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = unsigned char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = unsigned char]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = short unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = short unsigned int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = unsigned int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ g++ -o lib/rstbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_ext.so.0 rstbx/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 311 | def( \ | ~~~^~~ 312 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = long int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 311 | def( \ | ~~~^~~ 312 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = signed char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 311 | def( \ | ~~~^~~ 312 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = short int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 311 | def( \ | ~~~^~~ 312 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 963 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594, from /usr/include/c++/16/string:52, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 964 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ Create symlinks for: 'lib/rstbx_ext.so.0.0.1' 'lib/rstbx_ext.so.0'->'lib/rstbx_ext.so.0.0.1' 'lib/rstbx_ext.so'->'lib/rstbx_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_double_matrix.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = float]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 963 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594, from /usr/include/c++/16/string:52, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = float]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 964 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = long int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = long int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = float]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = float]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = signed char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = signed char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = float]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = float]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = short int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = short int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = long int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = long int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = signed char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = signed char]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = short int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = short int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/norms.h: In instantiation of ‘FloatType scitbx::matrix::norm_1(const scitbx::af::const_ref >&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp:119:74: required from here 119 | double (*matrix_norm_1)(const_ref const &) = matrix::norm_1; | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/norms.h:16:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 16 | for (int i=0; i >&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp:177:11: required from here 145 | class_f_t | ~~~~~~~~~ 146 | .def("is_square_matrix", is_square_matrix) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 | .def("matrix_diagonal", | ~~~~~~~~~~~~~~~~~~~~~~~ 148 | (shared(*)( | ~~~~~~~~~~~~~~~~~~~ 149 | const_ref > const&)) matrix_diagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 | .def("matrix_upper_bidiagonal", matrix_upper_bidiagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 | .def("matrix_lower_bidiagonal", matrix_lower_bidiagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | .def("matrix_diagonal_set_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 | (void(*)( | ~~~~~~~~~ 154 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 | double const&)) matrix_diagonal_set_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 | arg("value")) | ~~~~~~~~~~~~~ 157 | .def("matrix_diagonal_set_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 | (void(*)( | ~~~~~~~~~ 159 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 | const_ref const&)) matrix_diagonal_set_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 | arg("diagonal")) | ~~~~~~~~~~~~~~~~ 162 | .def("matrix_diagonal_add_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 | (void(*)( | ~~~~~~~~~ 164 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 | double const&)) matrix_diagonal_add_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 | arg("value")) | ~~~~~~~~~~~~~ 167 | .def("matrix_diagonal_sum", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 | (double(*)( | ~~~~~~~~~~~ 169 | const_ref > const&)) matrix_diagonal_sum) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 | .def("matrix_trace", | ~~~~~~~~~~~~~~~~~~~~ 171 | (double(*)( | ~~~~~~~~~~~ 172 | const_ref > const&)) matrix_diagonal_sum) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 | .def("matrix_diagonal_product", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 | (double(*)( | ~~~~~~~~~~~ 175 | const_ref > const&)) matrix_diagonal_product) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 | .def("matrix_norm_1", matrix_norm_1) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | .def("matrix_norm_inf", matrix::norm_inf) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/norms.h:32:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 32 | for (int i=0; i >&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp:178:11: required from here 145 | class_f_t | ~~~~~~~~~ 146 | .def("is_square_matrix", is_square_matrix) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 | .def("matrix_diagonal", | ~~~~~~~~~~~~~~~~~~~~~~~ 148 | (shared(*)( | ~~~~~~~~~~~~~~~~~~~ 149 | const_ref > const&)) matrix_diagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 | .def("matrix_upper_bidiagonal", matrix_upper_bidiagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 | .def("matrix_lower_bidiagonal", matrix_lower_bidiagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | .def("matrix_diagonal_set_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 | (void(*)( | ~~~~~~~~~ 154 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 | double const&)) matrix_diagonal_set_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 | arg("value")) | ~~~~~~~~~~~~~ 157 | .def("matrix_diagonal_set_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 | (void(*)( | ~~~~~~~~~ 159 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 | const_ref const&)) matrix_diagonal_set_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 | arg("diagonal")) | ~~~~~~~~~~~~~~~~ 162 | .def("matrix_diagonal_add_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 | (void(*)( | ~~~~~~~~~ 164 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 | double const&)) matrix_diagonal_add_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 | arg("value")) | ~~~~~~~~~~~~~ 167 | .def("matrix_diagonal_sum", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 | (double(*)( | ~~~~~~~~~~~ 169 | const_ref > const&)) matrix_diagonal_sum) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 | .def("matrix_trace", | ~~~~~~~~~~~~~~~~~~~~ 171 | (double(*)( | ~~~~~~~~~~~ 172 | const_ref > const&)) matrix_diagonal_sum) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 | .def("matrix_diagonal_product", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 | (double(*)( | ~~~~~~~~~~~ 175 | const_ref > const&)) matrix_diagonal_product) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 | .def("matrix_norm_1", matrix_norm_1) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | .def("matrix_norm_inf", matrix::norm_inf) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | .def("matrix_norm_frobenius", matrix::norm_frobenius) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/norms.h:46:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | for (int k=0; k < a_ij.size(); ++k) norm_accu(a_ij[k]); | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp: In function ‘scitbx::af::flex::type* scitbx::af::{anonymous}::from_list_or_tuple_of_lists_or_tuples(PyObject*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:138:38: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 138 | if (PyList_GET_SIZE(row) != n_columns) { | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:154:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 154 | if (PyTuple_GET_SIZE(row) != n_columns) { | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:190:38: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 190 | if (PyList_GET_SIZE(row) != n_columns) { | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:206:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 206 | if (PyTuple_GET_SIZE(row) != n_columns) { | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp: In function ‘std::string scitbx::af::{anonymous}::mathematica_form(const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:452:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 452 | for (int i=1; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 454 | if (i != indices.size() - 1) o << ","; | ~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/norms.h: In instantiation of ‘FloatType scitbx::matrix::norm_1(const scitbx::af::const_ref&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:365:26: required from here 365 | return matrix::norm_1(self); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/norms.h:25:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 25 | for (int i=0; i scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:536:8: required from here 536 | def( | ~~~^ 537 | "double_from_byte_str", | ~~~~~~~~~~~~~~~~~~~~~~~ 538 | shared_from_byte_str, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 | (arg("byte_str"))); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 963 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594, from /usr/include/c++/16/string:52, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 964 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = double]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o lib/rstbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_array_family_flex_ext.so.0 rstbx/array_family/ext.o rstbx/array_family/flex_rstbx_arrays.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/rstbx_array_family_flex_ext.so.0.0.1' 'lib/rstbx_array_family_flex_ext.so.0'->'lib/rstbx_array_family_flex_ext.so.0.0.1' 'lib/rstbx_array_family_flex_ext.so'->'lib/rstbx_array_family_flex_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_complex_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = std::complex]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = std::complex]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = std::complex]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = std::complex]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/flex_std_string.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_random.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_random.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h: In function ‘scitbx::af::shared > scitbx::misc::split_lines(const char*, std::size_t, bool, bool)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:24:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 24 | while (i < size) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:25:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 25 | while (i < size && data[i] != '\n' && data[i] != '\r') i++; | ~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:27:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 27 | if (i < size) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:28:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 28 | if (data[i] == '\r' && i+1 < size && data[i+1] == '\n') { | ~~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:46:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | if (j < size) { | ~~^~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >; e_t = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:885:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 885 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to<__cxx11::basic_string >; _Tp = __cxx11::basic_string]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594, from /usr/include/c++/16/string:52, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >; e_t = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:886:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 886 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to<__cxx11::basic_string >; _Tp = __cxx11::basic_string]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = std::__cxx11::basic_string]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/flex_sort.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_sort.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_histogram.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_histogram.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_weighted_histogram.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_weighted_histogram.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_mean_and_variance.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_mean_and_variance.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_median.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_median.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_linear_interpolation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_linear_interpolation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_median.cpp:2: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/basic_statistics.h: In instantiation of ‘scitbx::math::median_statistics scitbx::math::median_functor::dispersion(const scitbx::af::ref&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_median.cpp:31:26: required from ‘static scitbx::math::median_statistics scitbx::af::boost_python::median_functor_wrapper::dispersion(wt&, const scitbx::af::const_ref&) [with FloatType = double; wt = scitbx::math::median_functor]’ 31 | return O.dispersion(af::make_ref(buffer)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_median.cpp:40:13: required from ‘static void scitbx::af::boost_python::median_functor_wrapper::wrap(const char*) [with FloatType = double]’ 36 | class_(name, no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | .def(init<>()) | ~~~~~~~~~~~~~~ 38 | .def(init(arg("seed"))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | .def("__call__", call, arg("data")) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | .def("dispersion", dispersion, arg("data")) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_median.cpp:63:41: required from here 63 | median_functor_wrapper::wrap("median_functor"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/basic_statistics.h:210:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 210 | for (int i=0; i < data.size(); ++i) { | ~~^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_vec3_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_vec2_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_vec3_int.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_sym_mat3_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_mat3_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_tiny_size_t_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp: In function ‘scitbx::af::flex >::type* scitbx::af::{anonymous}::array_indices_as_double_from_array_focus_dimensions(const scitbx::vec2&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:128:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 128 | for(std::size_t i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec3]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec3]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::vec2]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::vec2]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::vec2]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec2]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::sym_mat3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::sym_mat3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::sym_mat3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::sym_mat3]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::mat3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::mat3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::mat3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::mat3]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = tiny]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::vec3; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::sym_mat3; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::sym_mat3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::sym_mat3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::sym_mat3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::sym_mat3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::sym_mat3*; _Size = long unsigned int; _Tp = scitbx::sym_mat3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::af::tiny; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::af::tiny]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::af::tiny*; _Size = long unsigned int; _Tp = scitbx::af::tiny]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::mat3; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::mat3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::mat3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::mat3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::mat3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::mat3*; _Size = long unsigned int; _Tp = scitbx::mat3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::vec2; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec2&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec2]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec2]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::vec2&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec2*; _Size = long unsigned int; _Tp = scitbx::vec2]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::vec3; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/loops.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/loops.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/show_sizes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/show_sizes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/numpy_bridge.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DSCITBX_HAVE_NUMPY_INCLUDE -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/shared_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = bool]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:204:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = bool]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:204:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:205:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:205:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = long int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:206:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = long int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:206:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = float]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:207:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = float]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:207:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:208:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:208:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = std::complex]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:209:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = std::complex]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:209:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = signed char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:210:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = signed char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:210:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = short int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:211:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = short int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:211:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = unsigned char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:216:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = unsigned char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:216:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = short unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:217:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = short unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:217:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:218:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:218:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:226:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:226:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ g++ -o scitbx/cubicle_neighbors_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::vector; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp:40:53: required from here 40 | shared_wrapper, rir>::wrap("stl_vector_unsigned"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::vector; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp:41:51: required from here 41 | shared_wrapper, rir>::wrap("stl_vector_double"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::set; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp:42:50: required from here 42 | shared_wrapper, rir>::wrap("stl_set_unsigned") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp:48:37: required from here 48 | shared_wrapper >::wrap("mat3_int"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp:49:40: required from here 49 | shared_wrapper >::wrap("tiny_int_3"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp:50:40: required from here 50 | shared_wrapper >::wrap("tiny_int_4"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp:51:40: required from here 51 | shared_wrapper >::wrap("tiny_int_2"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o scitbx/fftpack/boost_python/fftpack_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/boost_python/fftpack_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/glmtbx/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/glmtbx/boost_python/ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/graphics_utils/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/graphics_utils/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/gridding.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/boost_python/fftpack_ext.cpp:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors_ext.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors.hpp: In instantiation of ‘std::map > scitbx::cubicle_neighbors::neighbors_of(const scitbx::af::const_ref >&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors_ext.cpp:23:36: required from here 23 | .def("neighbors_of", &w_t::neighbors_of, ( | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors.hpp:61:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 61 | if (i_cub[0] < 0 || i_cub[0] >= n_cubicles[0]) continue; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors.hpp:63:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 63 | if (i_cub[1] < 0 || i_cub[1] >= n_cubicles[1]) continue; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors.hpp:65:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 65 | if (i_cub[2] < 0 || i_cub[2] >= n_cubicles[2]) continue; In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors.hpp:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicles.h: In instantiation of ‘scitbx::vec3 scitbx::cubicles::i_cubicle(const SiteType&) const [with SiteType = scitbx::vec3; CubicleContentType = std::vector::cubicle_site, std::allocator::cubicle_site> >; FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors.hpp:43:30: required from ‘scitbx::cubicle_neighbors::cubicle_neighbors(const scitbx::af::const_ref >&, const FloatType&, const FloatType&) [with FloatType = double]’ 43 | cubicles_.i_cubicle(main_sites_cart[i_seq])); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value; A2 = boost::python::objects::reference_to_value; Value = scitbx::cubicle_neighbors<>; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<3>::apply::execute(PyObject*, t0, t1, t2) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector3 >&, const double&, const double&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const double&; t2 = const double&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector3 >&, const double&, const double&>; Arity = boost::mpl::size >&, const double&, const double&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector3 >&, const double&, const double&>; NArgs = boost::mpl::size >&, const double&, const double&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector3 >&, const double&, const double&>; NArgs = boost::mpl::size >&, const double&, const double&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const double&, const double&>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const double&, const double&> >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const double&, const double&>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const double&, const double&>; W = scitbx::cubicle_neighbors<>; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors_ext.cpp:16:13: required from here 15 | class_("cubicle_neighbors", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 16 | .def(init< | ~~~~^~~~~~ 17 | af::const_ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 18 | double const&, | ~~~~~~~~~~~~~~ 19 | double const&>(( | ~~~~~~~~~~~~~~~~ 20 | arg("main_sites_cart"), | ~~~~~~~~~~~~~~~~~~~~~~~ 21 | arg("cubicle_edge"), | ~~~~~~~~~~~~~~~~~~~~ 22 | arg("epsilon")=1.e-6))) | ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicles.h:176:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 176 | else if (j >= ref.accessor()[i]) j = ref.accessor()[i]-1; | ~~^~~~~~~~~~~~~~~~~~ g++ -o scitbx/iso_surface/iso_surface_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/iso_surface/iso_surface_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_cubicle_neighbors_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_cubicle_neighbors_ext.so.0 scitbx/cubicle_neighbors_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/scitbx_cubicle_neighbors_ext.so.0.0.1' 'lib/scitbx_cubicle_neighbors_ext.so.0'->'lib/scitbx_cubicle_neighbors_ext.so.0.0.1' 'lib/scitbx_cubicle_neighbors_ext.so'->'lib/scitbx_cubicle_neighbors_ext.so.0.0.1' g++ -o scitbx/lbfgs/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DSCITBX_LBFGS_HAVE_LBFGS_FEM -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgs/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lbfgs/lbfgs_fem.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable scitbx/lbfgs/lbfgs_fem.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/io.hpp:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/close_chain.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem.hpp:10, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include/scitbx/lbfgs_fem.hpp:1, from scitbx/lbfgs/lbfgs_fem.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp: In member function ‘void fem::common::getarg(int, fem::str_ref) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp:40:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/variant.hpp:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:8: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ g++ -o lib/scitbx_iso_surface_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_iso_surface_ext.so.0 scitbx/iso_surface/iso_surface_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/scitbx_iso_surface_ext.so.0.0.1' 'lib/scitbx_iso_surface_ext.so.0'->'lib/scitbx_iso_surface_ext.so.0.0.1' 'lib/scitbx_iso_surface_ext.so'->'lib/scitbx_iso_surface_ext.so.0.0.1' g++ -o scitbx/lbfgsb/boost_python/lbfgsb_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/linalg/boost_python/linalg_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/linalg_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/linalg/boost_python/matrix.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/matrix.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_graphics_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_graphics_utils_ext.so.0 scitbx/graphics_utils/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/scitbx_graphics_utils_ext.so.0.0.1' 'lib/scitbx_graphics_utils_ext.so.0'->'lib/scitbx_graphics_utils_ext.so.0.0.1' 'lib/scitbx_graphics_utils_ext.so'->'lib/scitbx_graphics_utils_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/cholesky.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/cholesky.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_glmtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_glmtbx_ext.so.0 scitbx/glmtbx/boost_python/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/scitbx_glmtbx_ext.so.0.0.1' 'lib/scitbx_glmtbx_ext.so.0'->'lib/scitbx_glmtbx_ext.so.0.0.1' 'lib/scitbx_glmtbx_ext.so'->'lib/scitbx_glmtbx_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/householder.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/householder.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/serialization/base_256.h:2, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/floating_point_epsilon.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:142:22: required from ‘bool scitbx::lbfgsb::minimizer::process(const scitbx::af::ref&, const FloatType&, const scitbx::af::ref&, bool) [with FloatType = double]’ 142 | raw::setulb( | ~~~~~~~~~~~^ 143 | n_, | ~~~ 144 | m_, | ~~~ 145 | raw::ref1(x), | ~~~~~~~~~~~~~~~~~~~~~~~~ 146 | raw::ref1(l_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 | raw::ref1(u_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 | raw::ref1(nbd_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 | f_, | ~~~ 150 | raw::ref1(g), | ~~~~~~~~~~~~~~~~~~~~~~~~ 151 | factr_, | ~~~~~~~ 152 | pgtol_, | ~~~~~~~ 153 | raw::ref1(wa_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 | raw::ref1(iwa_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 | task_, | ~~~~~~ 156 | iprint_, | ~~~~~~~~ 157 | csave_, | ~~~~~~~ 158 | raw::ref1(lsave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 | raw::ref1(isave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 | raw::ref1(dsave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 | enable_stp_init_); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:29:25: required from ‘static void scitbx::lbfgsb::{anonymous}::minimizer_wrappers::wrap() [with FloatType = double]’ 29 | .def("process", &w_t::process, ( | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:37: required from here 112 | minimizer_wrappers::wrap(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::write_ref1(const std::string&, const ref1&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:974:19: required from ‘void scitbx::lbfgsb::raw::prn3lb(const int&, const ref1&, const FloatType&, const std::string&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const FloatType&, const FloatType&, const int&, const std::string&, const int&, const FloatType&, const FloatType&, const int&, const FloatType&, const FloatType&, const FloatType&) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 974 | write_ref1(" X =", x); | ~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3786:15: required from ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 3786 | prn3lb(n,x,f,task,iprint,info,itfile, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3787 | iter,nfgv,nintol,nskip,nact,sbgnrm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3788 | zero,nint,word,iback,stp,xstep,k, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3789 | cachyt,sbtime,lnscht); | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:142:22: required from ‘bool scitbx::lbfgsb::minimizer::process(const scitbx::af::ref&, const FloatType&, const scitbx::af::ref&, bool) [with FloatType = double]’ 142 | raw::setulb( | ~~~~~~~~~~~^ 143 | n_, | ~~~ 144 | m_, | ~~~ 145 | raw::ref1(x), | ~~~~~~~~~~~~~~~~~~~~~~~~ 146 | raw::ref1(l_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 | raw::ref1(u_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 | raw::ref1(nbd_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 | f_, | ~~~ 150 | raw::ref1(g), | ~~~~~~~~~~~~~~~~~~~~~~~~ 151 | factr_, | ~~~~~~~ 152 | pgtol_, | ~~~~~~~ 153 | raw::ref1(wa_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 | raw::ref1(iwa_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 | task_, | ~~~~~~ 156 | iprint_, | ~~~~~~~~ 157 | csave_, | ~~~~~~~ 158 | raw::ref1(lsave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 | raw::ref1(isave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 | raw::ref1(dsave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 | enable_stp_init_); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:29:25: required from ‘static void scitbx::lbfgsb::{anonymous}::minimizer_wrappers::wrap() [with FloatType = double]’ 29 | .def("process", &w_t::process, ( | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:37: required from here 112 | minimizer_wrappers::wrap(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j::minimizer(const int&, const int&, scitbx::af::shared, scitbx::af::shared, scitbx::af::shared, bool, const FloatType&, const FloatType&, const int&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5, A6, A7, A8) [with A0 = boost::python::objects::reference_to_value; A1 = boost::python::objects::reference_to_value; A2 = boost::python::objects::reference_to_value >; A3 = boost::python::objects::reference_to_value >; A4 = boost::python::objects::reference_to_value >; A5 = bool; A6 = boost::python::objects::reference_to_value; A7 = boost::python::objects::reference_to_value; A8 = boost::python::objects::reference_to_value; Value = scitbx::lbfgsb::minimizer; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<9>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5, t6, t7, t8) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; PyObject = _object; t0 = const int&; t1 = const int&; t2 = scitbx::af::shared; t3 = scitbx::af::shared; t4 = scitbx::af::shared; t5 = bool; t6 = const double&; t7 = const double&; t8 = const int&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; Arity = boost::mpl::size, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_, not_specified, not_specified, not_specified>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; NArgs = boost::mpl::size, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; NArgs = boost::mpl::size, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedT = boost::python::init, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >; classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedVisitor = boost::python::init, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>; W = scitbx::lbfgsb::minimizer; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:20:13: required from ‘static void scitbx::lbfgsb::{anonymous}::minimizer_wrappers::wrap() [with FloatType = double]’ 19 | class_("minimizer", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 20 | .def(init, | ~~~~~~~~~~~~~~~~~~~~~~ 23 | af::shared, | ~~~~~~~~~~~~~~~~~~~~~~ 24 | af::shared, | ~~~~~~~~~~~~~~~~ 25 | bool, | ~~~~~ 26 | FloatType const&, | ~~~~~~~~~~~~~~~~~ 27 | FloatType const&, | ~~~~~~~~~~~~~~~~~ 28 | int const&>()) | ~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:37: required from here 112 | minimizer_wrappers::wrap(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:118:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 118 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:118:9: note: in expansion of macro ‘SCITBX_ASSERT’ 118 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:119:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 119 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:119:9: note: in expansion of macro ‘SCITBX_ASSERT’ 119 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:120:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 120 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:120:9: note: in expansion of macro ‘SCITBX_ASSERT’ 120 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/linalg/boost_python/svd.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/svd.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_fftpack_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_fftpack_ext.so.0 scitbx/fftpack/boost_python/fftpack_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/scitbx_fftpack_ext.so.0.0.1' 'lib/scitbx_fftpack_ext.so.0'->'lib/scitbx_fftpack_ext.so.0.0.1' 'lib/scitbx_fftpack_ext.so'->'lib/scitbx_fftpack_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/eigensystem.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/eigensystem.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_lbfgsb_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_lbfgsb_ext.so.0 scitbx/lbfgsb/boost_python/lbfgsb_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm -lboost_timer Create symlinks for: 'lib/scitbx_lbfgsb_ext.so.0.0.1' 'lib/scitbx_lbfgsb_ext.so.0'->'lib/scitbx_lbfgsb_ext.so.0.0.1' 'lib/scitbx_lbfgsb_ext.so'->'lib/scitbx_lbfgsb_ext.so.0.0.1' g++ -o lib/scitbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_array_family_flex_ext.so.0 scitbx/array_family/boost_python/flex_ext.o scitbx/array_family/boost_python/flex_grid.o scitbx/array_family/boost_python/flex_bool.o scitbx/array_family/boost_python/flex_size_t.o scitbx/array_family/boost_python/flex_int.o scitbx/array_family/boost_python/flex_float.o scitbx/array_family/boost_python/flex_double.o scitbx/array_family/boost_python/flex_double_matrix.o scitbx/array_family/boost_python/flex_complex_double.o scitbx/array_family/boost_python/flex_std_string.o scitbx/array_family/boost_python/flex_random.o scitbx/array_family/boost_python/flex_sort.o scitbx/array_family/boost_python/flex_histogram.o scitbx/array_family/boost_python/flex_weighted_histogram.o scitbx/array_family/boost_python/flex_mean_and_variance.o scitbx/array_family/boost_python/flex_median.o scitbx/array_family/boost_python/flex_linear_interpolation.o scitbx/array_family/boost_python/flex_vec3_double.o scitbx/array_family/boost_python/flex_vec2_double.o scitbx/array_family/boost_python/flex_vec3_int.o scitbx/array_family/boost_python/flex_sym_mat3_double.o scitbx/array_family/boost_python/flex_mat3_double.o scitbx/array_family/boost_python/flex_tiny_size_t_2.o scitbx/array_family/boost_python/loops.o scitbx/array_family/boost_python/show_sizes.o scitbx/array_family/boost_python/numpy_bridge.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm -lboost_numpy315 g++ -o scitbx/linalg/boost_python/lapack_fem_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lstbx/boost_python/lstbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lstbx/boost_python/lstbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lstbx/boost_python/normal_equations.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lstbx/boost_python/normal_equations.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/math_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/math_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_lbfgs_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_lbfgs_ext.so.0 scitbx/lbfgs/ext.o scitbx/lbfgs/lbfgs_fem.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/scitbx_lbfgs_ext.so.0.0.1' 'lib/scitbx_lbfgs_ext.so.0'->'lib/scitbx_lbfgs_ext.so.0.0.1' 'lib/scitbx_lbfgs_ext.so'->'lib/scitbx_lbfgs_ext.so.0.0.1' g++ -o scitbx/math/boost_python/basic_statistics.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/basic_statistics.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/gaussian.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/gaussian.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp: In function ‘int scitbx::lapack::boost_python::dsyev_wrapper(const std::string&, const std::string&, const scitbx::af::ref >&, const scitbx::af::ref&, bool)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp:246:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 246 | SCITBX_ASSERT(w.size() == n); | ~~~~~~~~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp:246:5: note: in expansion of macro ‘SCITBX_ASSERT’ 246 | SCITBX_ASSERT(w.size() == n); | ^~~~~~~~~~~~~ g++ -o lib/scitbx_array_family_shared_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_array_family_shared_ext.so.0 scitbx/array_family/boost_python/shared_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm -lboost_numpy315 g++ -o scitbx/math/boost_python/golay.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/golay.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/scitbx_array_family_shared_ext.so.0.0.1' 'lib/scitbx_array_family_shared_ext.so.0'->'lib/scitbx_array_family_shared_ext.so.0.0.1' 'lib/scitbx_array_family_shared_ext.so'->'lib/scitbx_array_family_shared_ext.so.0.0.1' g++ -o scitbx/math/boost_python/minimum_covering_sphere.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/minimum_covering_sphere.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_linalg_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_linalg_ext.so.0 scitbx/linalg/boost_python/linalg_ext.o scitbx/linalg/boost_python/matrix.o scitbx/linalg/boost_python/cholesky.o scitbx/linalg/boost_python/householder.o scitbx/linalg/boost_python/svd.o scitbx/linalg/boost_python/eigensystem.o scitbx/linalg/boost_python/lapack_fem_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/scitbx_linalg_ext.so.0.0.1' 'lib/scitbx_linalg_ext.so.0'->'lib/scitbx_linalg_ext.so.0.0.1' 'lib/scitbx_linalg_ext.so'->'lib/scitbx_linalg_ext.so.0.0.1' g++ -o scitbx/math/boost_python/principal_axes_of_inertia.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/principal_axes_of_inertia.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/row_echelon.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/row_echelon.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/tensor_rank_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/tensor_rank_2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/chebyshev.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/chebyshev.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/icosahedron.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/icosahedron.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/slatec.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/slatec.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/line_search.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/line_search.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/r3_rotation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/r3_rotation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_lstbx_normal_equations_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_lstbx_normal_equations_ext.so.0 scitbx/lstbx/boost_python/lstbx_ext.o scitbx/lstbx/boost_python/normal_equations.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1' 'lib/scitbx_lstbx_normal_equations_ext.so.0'->'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1' 'lib/scitbx_lstbx_normal_equations_ext.so'->'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1' g++ -o scitbx/math/boost_python/resample.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/resample.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/quadrature.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/quadrature.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/unimodular_generator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/unimodular_generator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/halton.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/halton.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/least_squares_plane.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/least_squares_plane.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/continued_fraction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/continued_fraction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/numeric_limits.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/numeric_limits.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/distributions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/distributions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/exp_functions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/exp_functions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/zernike.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/zernike.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/zernike_moments.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/zernike_moments.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/scitbx_array_family_flex_ext.so.0.0.1' 'lib/scitbx_array_family_flex_ext.so.0'->'lib/scitbx_array_family_flex_ext.so.0.0.1' 'lib/scitbx_array_family_flex_ext.so'->'lib/scitbx_array_family_flex_ext.so.0.0.1' g++ -o scitbx/math/boost_python/2d_zernike_moments.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/2d_zernike_moments.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/weighted_covariance.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/weighted_covariance.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/rotation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/rotation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/interpolation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/interpolation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/tetrahedron.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/tetrahedron.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/angle_derivative.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/angle_derivative.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/minpack/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/minpack/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/r3_utils_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/r3_utils_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/minpack/raw.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/minpack/levenberg_marquardt.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/minpack/ext.cpp:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/minpack/levenberg_marquardt.h: In member function ‘void scitbx::minpack::levenberg_marquardt::process_fvec(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/minpack/levenberg_marquardt.h:80:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 80 | SCITBX_ASSERT(fvec.size() == m); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/minpack/levenberg_marquardt.h:80:9: note: in expansion of macro ‘SCITBX_ASSERT’ 80 | SCITBX_ASSERT(fvec.size() == m); | ^~~~~~~~~~~~~ g++ -o scitbx/random/boost_python/random_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/random/boost_python/random_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/random/boost_python/basic_distributions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/random/boost_python/basic_distributions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/rigid_body/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_r3_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_r3_utils_ext.so.0 scitbx/r3_utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/scitbx_r3_utils_ext.so.0.0.1' 'lib/scitbx_r3_utils_ext.so.0'->'lib/scitbx_r3_utils_ext.so.0.0.1' 'lib/scitbx_r3_utils_ext.so'->'lib/scitbx_r3_utils_ext.so.0.0.1' g++ -o scitbx/sparse/boost_python/vector.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sparse/boost_python/vector.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_minpack_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_minpack_ext.so.0 scitbx/minpack/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_minpack -lscitbx_boost_python -lboost_thread -lboost_python315 -lm g++ -o scitbx/sparse/boost_python/matrix.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sparse/boost_python/matrix.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/sparse/boost_python/approx_equal.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sparse/boost_python/approx_equal.cpp Create symlinks for: 'lib/scitbx_minpack_ext.so.0.0.1' 'lib/scitbx_minpack_ext.so.0'->'lib/scitbx_minpack_ext.so.0.0.1' 'lib/scitbx_minpack_ext.so'->'lib/scitbx_minpack_ext.so.0.0.1' cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/sparse/boost_python/random.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sparse/boost_python/random.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/sparse/boost_python/lu_factorization.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sparse/boost_python/lu_factorization.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rotr3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/spatial_lib.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/featherstone.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/tardy.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/ext.cpp:14: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 4]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:361:21: required from ‘scitbx::rotr3 scitbx::rigid_body::joint_lib::six_dof_aja_simplified(const scitbx::vec3&, const scitbx::af::const_ref&) [with FloatType = double]’ 361 | af::tiny qe(&q[0], &q[4]); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/ext.cpp:24:49: required from here 24 | result = joint_lib::six_dof_aja_simplified(center_of_mass, q); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_matrix.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/spatial_lib.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 6]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:44:33: required from ‘scitbx::af::small::small(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 6]’ 44 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/featherstone.h:683:31: required from ‘scitbx::af::shared > scitbx::rigid_body::featherstone::system_model::inverse_dynamics(const scitbx::af::const_ref >&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&) [with FloatType = double]’ 683 | tau_array[ib] = af::small(f[ib].begin(), f[ib].end()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/featherstone.h:705:21: required from ‘scitbx::af::shared scitbx::rigid_body::featherstone::system_model::inverse_dynamics_packed(const scitbx::af::const_ref&, const scitbx::af::const_ref&, const scitbx::af::const_ref&) [with FloatType = double]’ 705 | tau_array = inverse_dynamics( | ^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/ext.cpp:120:46: required from here 120 | .def("inverse_dynamics_packed", &wt::inverse_dynamics_packed, ( | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:59:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 59 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/tardy.h: In instantiation of ‘scitbx::af::shared > > scitbx::rigid_body::tardy::construct_bodies(const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const boost::python::api::object&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/tardy.h:203:54: required from ‘scitbx::rigid_body::tardy::model::model(const boost::python::api::object&, const scitbx::af::shared >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, const ft&) [with FloatType = double; ft = double]’ 203 | featherstone::system_model(construct_bodies( | ~~~~~~~~~~~~~~~~^ 204 | sites_.const_ref(), | ~~~~~~~~~~~~~~~~~~~ 205 | masses_.const_ref(), | ~~~~~~~~~~~~~~~~~~~~ 206 | tardy_tree_.attr("cluster_manager"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 | near_singular_hinges_angular_tolerance_deg_)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5) [with A0 = boost::python::objects::reference_to_value; A1 = boost::python::objects::reference_to_value >&>; A2 = boost::python::objects::reference_to_value&>; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value; A5 = boost::python::objects::reference_to_value; Value = scitbx::rigid_body::tardy::model<>; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<6>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; PyObject = _object; t0 = const boost::python::api::object&; t1 = const scitbx::af::shared >&; t2 = const scitbx::af::shared&; t3 = const boost::python::api::object&; t4 = const boost::python::api::object&; t5 = const double&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; Arity = boost::mpl::size >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional > >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; NArgs = boost::mpl::size >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional > >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:344:31: required from ‘static void boost::python::detail::define_class_init_helper::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, boost::python::detail::keyword_range) [with ClassT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; NArgs = boost::mpl::size >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional > >; int NDefaults = 1; boost::python::detail::keyword_range = std::pair]’ 344 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; DerivedT = boost::python::init >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional >]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional > >; classT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; DerivedVisitor = boost::python::init >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional >]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional >; W = scitbx::rigid_body::tardy::model<>; X1 = boost::python::bases >; X2 = boost::noncopyable_::noncopyable; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/ext.cpp:151:13: required from here 146 | class_ >, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 | boost::noncopyable | ~~~~~~~~~~~~~~~~~~ 149 | >("tardy_model", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~ 150 | .enable_pickling() | ~~~~~~~~~~~~~~~~~~ 151 | .def(init< | ~~~~^~~~~~ 152 | object const&, | ~~~~~~~~~~~~~~ 153 | af::shared > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 | af::shared const&, | ~~~~~~~~~~~~~~~~~~~~~~ 155 | object const&, | ~~~~~~~~~~~~~~ 156 | object const&, | ~~~~~~~~~~~~~~ 157 | optional >(( | ~~~~~~~~~~~~~~~~~~~~~~~ 158 | arg("labels"), | ~~~~~~~~~~~~~~ 159 | arg("sites"), | ~~~~~~~~~~~~~ 160 | arg("masses"), | ~~~~~~~~~~~~~~ 161 | arg("tardy_tree"), | ~~~~~~~~~~~~~~~~~~ 162 | arg("potential_obj"), | ~~~~~~~~~~~~~~~~~~~~~ 163 | arg("near_singular_hinges_angular_tolerance_deg")=5))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/tardy.h:163:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 163 | SCITBX_ASSERT(body->parent < nc); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/tardy.h:163:9: note: in expansion of macro ‘SCITBX_ASSERT’ 163 | SCITBX_ASSERT(body->parent < nc); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 1]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:648:13: required from ‘boost::shared_ptr > scitbx::rigid_body::joint_lib::revolute::new_q(const scitbx::af::const_ref&) const [with FloatType = double]’ 648 | af::tiny(q.begin(), q.end()))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:643:5: required from here 643 | new_q( | ^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 12]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:45:16: required from ‘scitbx::af::tiny scitbx::rigid_body::joint_lib::rbda_eq_4_13(const scitbx::af::tiny&) [with FloatType = double]’ 45 | return af::tiny(coeffs, coeffs+4*3) * ft(0.5); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:279:21: required from ‘boost::shared_ptr > scitbx::rigid_body::joint_lib::six_dof::time_step_position(const scitbx::af::const_ref&, const ft&) const [with FloatType = double; ft = double]’ 279 | rbda_eq_4_13(unit_quaternion), w_body_frame); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:271:5: required from here 271 | time_step_position( | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 16]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:79:16: required from ‘scitbx::af::tiny scitbx::rigid_body::joint_lib::d_unit_quaternion_d_qe_matrix(const scitbx::af::tiny&) [with FloatType = double]’ 79 | return af::tiny(coeffs, coeffs+4*4) / n3; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:317:58: required from ‘scitbx::af::small scitbx::rigid_body::joint_lib::six_dof::tau_as_d_e_pot_d_q(const scitbx::af::small&) const [with FloatType = double]’ 317 | af::tiny d = d_unit_quaternion_d_qe_matrix(qe); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:313:5: required from here 313 | tau_as_d_e_pot_d_q( | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 7]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:44:33: required from ‘scitbx::af::small::small(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 7]’ 44 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:324:24: required from ‘scitbx::af::small scitbx::rigid_body::joint_lib::six_dof::tau_as_d_e_pot_d_q(const scitbx::af::small&) const [with FloatType = double]’ 324 | af::small result(cn.begin(), cn.end()); | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:313:5: required from here 313 | tau_as_d_e_pot_d_q( | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:59:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 59 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o scitbx/sparse/boost_python/sparse_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sparse/boost_python/sparse_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/stl/map_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/map_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/stl/set_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_math_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_math_ext.so.0 scitbx/math/boost_python/math_ext.o scitbx/math/boost_python/basic_statistics.o scitbx/math/boost_python/gaussian.o scitbx/math/boost_python/golay.o scitbx/math/boost_python/minimum_covering_sphere.o scitbx/math/boost_python/principal_axes_of_inertia.o scitbx/math/boost_python/row_echelon.o scitbx/math/boost_python/tensor_rank_2.o scitbx/math/boost_python/chebyshev.o scitbx/math/boost_python/icosahedron.o scitbx/math/boost_python/slatec.o scitbx/math/boost_python/line_search.o scitbx/math/boost_python/r3_rotation.o scitbx/math/boost_python/resample.o scitbx/math/boost_python/quadrature.o scitbx/math/boost_python/unimodular_generator.o scitbx/math/boost_python/halton.o scitbx/math/boost_python/least_squares_plane.o scitbx/math/boost_python/continued_fraction.o scitbx/math/boost_python/numeric_limits.o scitbx/math/boost_python/distributions.o scitbx/math/boost_python/exp_functions.o scitbx/math/boost_python/zernike.o scitbx/math/boost_python/zernike_moments.o scitbx/math/boost_python/2d_zernike_moments.o scitbx/math/boost_python/weighted_covariance.o scitbx/math/boost_python/rotation.o scitbx/math/boost_python/interpolation.o scitbx/math/boost_python/tetrahedron.o scitbx/math/boost_python/angle_derivative.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_slatec -lscitbx_boost_python -lboost_thread -lboost_python315 -lm In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_ext.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_wrapper.h: In static member function ‘static void scitbx::stl::boost_python::set_wrapper::wrap(const std::string&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_wrapper.h:52:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 52 | bp::class_ >(python_name.c_str()) | ^~~~~~~~ In file included from /usr/include/c++/16/memory:80, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_wrapper.h:4: /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::set, std::allocator >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::set, std::allocator >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_wrapper.h:68:52: required from ‘static void scitbx::stl::boost_python::set_wrapper::wrap(const std::string&) [with ElementType = unsigned int; std::string = std::__cxx11::basic_string]’ 68 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 69 | w_t, scitbx::boost_python::container_conversions::set_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_ext.cpp:9:32: required from here 9 | set_wrapper::wrap("unsigned"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::set, std::less >, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::set, std::less >, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_wrapper.h:68:52: required from ‘static void scitbx::stl::boost_python::set_wrapper::wrap(const std::string&) [with ElementType = std::__cxx11::basic_string; std::string = std::__cxx11::basic_string]’ 68 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 69 | w_t, scitbx::boost_python::container_conversions::set_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_ext.cpp:10:35: required from here 10 | set_wrapper::wrap("stl_string"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o scitbx/stl/vector_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_random_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_random_ext.so.0 scitbx/random/boost_python/random_ext.o scitbx/random/boost_python/basic_distributions.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_matrix.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/array_as_list.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/ext.cpp:3: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ Create symlinks for: 'lib/scitbx_random_ext.so.0.0.1' 'lib/scitbx_random_ext.so.0'->'lib/scitbx_random_ext.so.0.0.1' 'lib/scitbx_random_ext.so'->'lib/scitbx_random_ext.so.0.0.1' g++ -o scitbx/suffixtree/boost_python/suffixtree_shared_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/suffixtree/boost_python/suffixtree_shared_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::af::tiny*; _Size = long unsigned int; _Tp = scitbx::af::tiny]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h: In function ‘void scitbx::af::shared_plain::resize(const size_type&) [with ElementType = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:175:15: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 175 | resize(new_size, ElementType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::af::tiny]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:175:26: note: ‘’ declared here 175 | resize(new_size, ElementType()); | ^~~~~~~~~~~~~ Create symlinks for: 'lib/scitbx_math_ext.so.0.0.1' 'lib/scitbx_math_ext.so.0'->'lib/scitbx_math_ext.so.0.0.1' 'lib/scitbx_math_ext.so'->'lib/scitbx_math_ext.so.0.0.1' g++ -o scitbx/suffixtree/boost_python/suffixtree_single_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/suffixtree/boost_python/suffixtree_single_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/suffixtree/boost_python/object_extensions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/suffixtree/boost_python/object_extensions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_wrapper.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_ext.cpp:2: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_wrapper.h:121:52: required from ‘static void scitbx::stl::boost_python::vector_wrapper::wrap(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 121 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 122 | w_t, | ~~~~ 123 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_ext.cpp:10:35: required from here 10 | vector_wrapper::wrap("unsigned"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_wrapper.h:121:52: required from ‘static void scitbx::stl::boost_python::vector_wrapper::wrap(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 121 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 122 | w_t, | ~~~~ 123 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_ext.cpp:11:33: required from here 11 | vector_wrapper::wrap("double"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_wrapper.h:121:52: required from ‘static void scitbx::stl::boost_python::vector_wrapper::wrap(const std::string&) [with ElementType = std::set; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 121 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 122 | w_t, | ~~~~ 123 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_ext.cpp:14:50: required from here 14 | vector_wrapper, rir>::wrap("set_unsigned"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o lib/scitbx_suffixtree_shared_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_suffixtree_shared_ext.so.0 scitbx/suffixtree/boost_python/suffixtree_shared_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/scitbx_suffixtree_shared_ext.so.0.0.1' 'lib/scitbx_suffixtree_shared_ext.so.0'->'lib/scitbx_suffixtree_shared_ext.so.0.0.1' 'lib/scitbx_suffixtree_shared_ext.so'->'lib/scitbx_suffixtree_shared_ext.so.0.0.1' g++ -o scitbx/wigner/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/wigner/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/ab_initio/ab_initio_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/ab_initio/ab_initio_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_stl_set_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_stl_set_ext.so.0 scitbx/stl/set_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/scitbx_stl_set_ext.so.0.0.1' 'lib/scitbx_stl_set_ext.so.0'->'lib/scitbx_stl_set_ext.so.0.0.1' 'lib/scitbx_stl_set_ext.so'->'lib/scitbx_stl_set_ext.so.0.0.1' g++ -o smtbx/array_family/af_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/array_family/af_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_sparse_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_sparse_ext.so.0 scitbx/sparse/boost_python/vector.o scitbx/sparse/boost_python/matrix.o scitbx/sparse/boost_python/approx_equal.o scitbx/sparse/boost_python/random.o scitbx/sparse/boost_python/lu_factorization.o scitbx/sparse/boost_python/sparse_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/scitbx_sparse_ext.so.0.0.1' 'lib/scitbx_sparse_ext.so.0'->'lib/scitbx_sparse_ext.so.0.0.1' 'lib/scitbx_sparse_ext.so'->'lib/scitbx_sparse_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/affine.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/affine.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_rigid_body_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_rigid_body_ext.so.0 scitbx/rigid_body/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm g++ -o lib/smtbx_array_family_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_array_family_ext.so.0 smtbx/array_family/af_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/smtbx_array_family_ext.so.0.0.1' 'lib/smtbx_array_family_ext.so.0'->'lib/smtbx_array_family_ext.so.0.0.1' 'lib/smtbx_array_family_ext.so'->'lib/smtbx_array_family_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/constraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/constraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/scitbx_rigid_body_ext.so.0.0.1' 'lib/scitbx_rigid_body_ext.so.0'->'lib/scitbx_rigid_body_ext.so.0.0.1' 'lib/scitbx_rigid_body_ext.so'->'lib/scitbx_rigid_body_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/direction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/direction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_ab_initio_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_ab_initio_ext.so.0 smtbx/ab_initio/ab_initio_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/smtbx_ab_initio_ext.so.0.0.1' 'lib/smtbx_ab_initio_ext.so.0'->'lib/smtbx_ab_initio_ext.so.0.0.1' 'lib/smtbx_ab_initio_ext.so'->'lib/smtbx_ab_initio_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/geometrical_hydrogens.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/geometrical_hydrogens.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_wigner_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_wigner_ext.so.0 scitbx/wigner/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/scitbx_wigner_ext.so.0.0.1' 'lib/scitbx_wigner_ext.so.0'->'lib/scitbx_wigner_ext.so.0.0.1' 'lib/scitbx_wigner_ext.so'->'lib/scitbx_wigner_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/independent_scalar_parameters.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/independent_scalar_parameters.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/occupancy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/occupancy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/reparametrisation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/reparametrisation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_stl_vector_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_stl_vector_ext.so.0 scitbx/stl/vector_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/scitbx_stl_vector_ext.so.0.0.1' 'lib/scitbx_stl_vector_ext.so.0'->'lib/scitbx_stl_vector_ext.so.0.0.1' 'lib/scitbx_stl_vector_ext.so'->'lib/scitbx_stl_vector_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/rigid.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/rigid.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_stl_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_stl_map_ext.so.0 scitbx/stl/map_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm g++ -o smtbx/refinement/constraints/boost_python/same_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/same_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/scitbx_stl_map_ext.so.0.0.1' 'lib/scitbx_stl_map_ext.so.0'->'lib/scitbx_stl_map_ext.so.0.0.1' 'lib/scitbx_stl_map_ext.so'->'lib/scitbx_stl_map_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/scaled_adp.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/scaled_adp.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_suffixtree_single_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_suffixtree_single_ext.so.0 scitbx/suffixtree/boost_python/suffixtree_single_ext.o scitbx/suffixtree/boost_python/object_extensions.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/scitbx_suffixtree_single_ext.so.0.0.1' 'lib/scitbx_suffixtree_single_ext.so.0'->'lib/scitbx_suffixtree_single_ext.so.0.0.1' 'lib/scitbx_suffixtree_single_ext.so'->'lib/scitbx_suffixtree_single_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/scatterer_parameters.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/scatterer_parameters.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/shared.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/shared.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/special_position.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/special_position.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/symmetry_equivalent.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/symmetry_equivalent.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/boost_python/least_squares_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/boost_python/least_squares_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/boost_python/weighting_schemes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/boost_python/weighting_schemes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/boost_python/least_squares.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/boost_python/least_squares.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/restraints/boost_python/origin_fixing.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/restraints/boost_python/origin_fixing.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/restraints/boost_python/restraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/restraints/boost_python/restraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/stl/map_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/stl/map_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/structure_factors/direct/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/structure_factors/direct/boost_python/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/structure_factors/direct/boost_python/standard_xray.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/structure_factors/direct/boost_python/standard_xray.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/array_family/flex_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/python3.15 -Ispotfinder/array_family/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/array_family/src -Ispotfinder/array_family/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/array_family/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/array_family/flex_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/array_family/flex_distl_spot.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/python3.15 -Ispotfinder/array_family/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/array_family/src -Ispotfinder/array_family/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/array_family/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/array_family/flex_distl_spot.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/core_toolbox/boost_python/distltbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/python3.15 -Ispotfinder/core_toolbox/boost_python/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/boost_python/src -Ispotfinder/core_toolbox/boost_python/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/boost_python/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/boost_python/distltbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_stl_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_stl_map_ext.so.0 smtbx/stl/map_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/smtbx_stl_map_ext.so.0.0.1' 'lib/smtbx_stl_map_ext.so.0'->'lib/smtbx_stl_map_ext.so.0.0.1' 'lib/smtbx_stl_map_ext.so'->'lib/smtbx_stl_map_ext.so.0.0.1' g++ -o spotfinder/diffraction/geometry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/python3.15 -Ispotfinder/core_toolbox/boost_python/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/boost_python/src -Ispotfinder/core_toolbox/boost_python/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/boost_python/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/diffraction/geometry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/dxtbx_toolbox/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/python3.15 -Ispotfinder/dxtbx_toolbox/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/dxtbx_toolbox/src -Ispotfinder/dxtbx_toolbox/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/dxtbx_toolbox/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/dxtbx_toolbox/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_refinement_constraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_refinement_constraints_ext.so.0 smtbx/refinement/constraints/boost_python/affine.o smtbx/refinement/constraints/boost_python/constraints_ext.o smtbx/refinement/constraints/boost_python/direction.o smtbx/refinement/constraints/boost_python/geometrical_hydrogens.o smtbx/refinement/constraints/boost_python/independent_scalar_parameters.o smtbx/refinement/constraints/boost_python/occupancy.o smtbx/refinement/constraints/boost_python/reparametrisation.o smtbx/refinement/constraints/boost_python/rigid.o smtbx/refinement/constraints/boost_python/same_group.o smtbx/refinement/constraints/boost_python/scaled_adp.o smtbx/refinement/constraints/boost_python/scatterer_parameters.o smtbx/refinement/constraints/boost_python/shared.o smtbx/refinement/constraints/boost_python/special_position.o smtbx/refinement/constraints/boost_python/symmetry_equivalent.o smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.o smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lsmtbx_refinement_constraints -lscitbx_boost_python -lcctbx -lboost_thread -lboost_python315 -lm g++ -o spotfinder/core_toolbox/boost_python/hough_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/python3.15 -Ispotfinder/core_toolbox/boost_python/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/boost_python/src -Ispotfinder/core_toolbox/boost_python/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/boost_python/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/boost_python/hough_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/smtbx_refinement_constraints_ext.so.0.0.1' 'lib/smtbx_refinement_constraints_ext.so.0'->'lib/smtbx_refinement_constraints_ext.so.0.0.1' 'lib/smtbx_refinement_constraints_ext.so'->'lib/smtbx_refinement_constraints_ext.so.0.0.1' g++ -o lib/std_pair_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=std_pair_ext.so.0 boost_adaptbx/std_pair_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python315 -lm -lboost_timer Create symlinks for: 'lib/std_pair_ext.so.0.0.1' 'lib/std_pair_ext.so.0'->'lib/std_pair_ext.so.0.0.1' 'lib/std_pair_ext.so'->'lib/std_pair_ext.so.0.0.1' g++ -o xcif/xcif_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/xcif_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_refinement_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_refinement_restraints_ext.so.0 smtbx/refinement/restraints/boost_python/origin_fixing.o smtbx/refinement/restraints/boost_python/restraints_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/smtbx_refinement_restraints_ext.so.0.0.1' 'lib/smtbx_refinement_restraints_ext.so.0'->'lib/smtbx_refinement_restraints_ext.so.0.0.1' 'lib/smtbx_refinement_restraints_ext.so'->'lib/smtbx_refinement_restraints_ext.so.0.0.1' g++ -o mmtbx/masks/tst_mask.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/masks/tst_mask.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/spotfinder_dxtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_dxtbx_ext.so.0 spotfinder/dxtbx_toolbox/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -ldxtbxspotfinder -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm g++ -o lib/spotfinder_hough_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_hough_ext.so.0 spotfinder/core_toolbox/boost_python/hough_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/spotfinder_hough_ext.so.0.0.1' 'lib/spotfinder_hough_ext.so.0'->'lib/spotfinder_hough_ext.so.0.0.1' 'lib/spotfinder_hough_ext.so'->'lib/spotfinder_hough_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/regression_test_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.15 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/spotfinder_dxtbx_ext.so.0.0.1' 'lib/spotfinder_dxtbx_ext.so.0'->'lib/spotfinder_dxtbx_ext.so.0.0.1' 'lib/spotfinder_dxtbx_ext.so'->'lib/spotfinder_dxtbx_ext.so.0.0.1' g++ -o scitbx/array_family/tst_accessors.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:15: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<1>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:127:11: required from here 127 | verify(__LINE__, a.as_flex_grid().all(), a); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<4>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:145:11: required from here 145 | verify(__LINE__, a.as_flex_grid().all(), a); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<2>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:172:11: required from here 172 | verify(__LINE__, a.as_flex_grid().all(), a); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<3>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:202:11: required from here 202 | verify(__LINE__, a.as_flex_grid().all(), a); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:248:11: required from here 248 | verify(__LINE__, a.as_flex_grid().all(), a.all()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:280:11: required from here 280 | verify(__LINE__, a.as_flex_grid().all(), a.all()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:326:11: required from here 326 | verify(__LINE__, a.as_flex_grid().all(), a.all()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:371:11: required from here 371 | verify(__LINE__, a.as_flex_grid().all(), a.all()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ g++ -o mmtbx/masks/tst_mask -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread mmtbx/masks/tst_mask.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lmmtbx_masks -liotbx_pdb -lcctbx -lomptbx -lcctbx_sgtbx_asu -lm g++ -o scitbx/array_family/tst_af_1.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /usr/include/boost/python/list.hpp:10, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:156:78: required from here 156 | scitbx::boost_python::container_conversions::variable_capacity_policy>(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::__cxx11::list; ConversionPolicy = scitbx::boost_python::container_conversions::linked_list_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::__cxx11::list; ConversionPolicy = scitbx::boost_python::container_conversions::linked_list_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:160:72: required from here 160 | scitbx::boost_python::container_conversions::linked_list_policy>(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:164:71: required from here 164 | scitbx::boost_python::container_conversions::fixed_size_policy>(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:168:71: required from here 168 | scitbx::boost_python::container_conversions::fixed_size_policy>(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:172:75: required from here 172 | scitbx::boost_python::container_conversions::fixed_capacity_policy>(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/scoped_array.hpp:14, from /usr/include/boost/scoped_array.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:10, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include/scitbx/array_family/tiny_plain_apply.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::array_exercise::run_2() [with ArrayType = scitbx::af::small_plain]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::small_plain]’ 29 | run_2(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:619:52: required from here 619 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for(int i=0;i::run_2() [with ArrayType = scitbx::af::small]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::small]’ 29 | run_2(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:621:46: required from here 621 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for(int i=0;i::run_2() [with ArrayType = scitbx::af::shared_plain]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::shared_plain]’ 29 | run_2(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:624:48: required from here 624 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for(int i=0;i::run_2() [with ArrayType = scitbx::af::shared]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::shared]’ 29 | run_2(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:629:42: required from here 629 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for(int i=0;i::run_1() [with ArrayType = scitbx::af::versa_plain; AltArrayType = scitbx::af::versa_plain >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:415:12: required from ‘static void {anonymous}::versa_exercise::run() [with ArrayType = scitbx::af::versa_plain; AltArrayType = scitbx::af::versa_plain >]’ 415 | run_1(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:635:64: required from here 634 | versa_exercise, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 | af::versa_plain > >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:437:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 437 | check_true(__LINE__, a2.end() - a2.begin() == a2.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:438:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 438 | check_true(__LINE__, a3.end() - a3.begin() == a3.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:439:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 439 | check_true(__LINE__, a4.end() - a4.begin() == a4.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:440:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 440 | check_true(__LINE__, a5.end() - a5.begin() == a5.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:441:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 441 | check_true(__LINE__, a6.end() - a6.begin() == a6.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::versa_exercise::run_1() [with ArrayType = scitbx::af::versa; AltArrayType = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:415:12: required from ‘static void {anonymous}::versa_exercise::run() [with ArrayType = scitbx::af::versa; AltArrayType = scitbx::af::versa >]’ 415 | run_1(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:637:58: required from here 636 | versa_exercise, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 | af::versa > >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:437:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 437 | check_true(__LINE__, a2.end() - a2.begin() == a2.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:438:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 438 | check_true(__LINE__, a3.end() - a3.begin() == a3.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:439:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 439 | check_true(__LINE__, a4.end() - a4.begin() == a4.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:440:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 440 | check_true(__LINE__, a5.end() - a5.begin() == a5.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:441:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 441 | check_true(__LINE__, a6.end() - a6.begin() == a6.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include/scitbx/array_family/small_plain_apply.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const ElementType*, const ElementType*) [with ElementType = int; long unsigned int N = 128]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:41:17: required from ‘static void {anonymous}::array_exercise::run_1() [with ArrayType = scitbx::af::small_plain]’ 41 | ArrayType a5(a4.begin(), a4.begin()); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:28:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::small_plain]’ 28 | run_1(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:619:52: required from here 619 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:59:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 59 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_accessors -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_accessors.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o scitbx/array_family/tst_af_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_af_2 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_af_2.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o scitbx/array_family/tst_af_3.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_3.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_structure_factors_direct_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_structure_factors_direct_ext.so.0 smtbx/structure_factors/direct/boost_python/ext.o smtbx/structure_factors/direct/boost_python/standard_xray.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_python315 -lm g++ -o lib/xcif_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=xcif_ext.so.0 xcif/xcif_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread -lboost_python315 -lm Create symlinks for: 'lib/xcif_ext.so.0.0.1' 'lib/xcif_ext.so.0'->'lib/xcif_ext.so.0.0.1' 'lib/xcif_ext.so'->'lib/xcif_ext.so.0.0.1' g++ -o lib/spotfinder_distltbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_distltbx_ext.so.0 spotfinder/core_toolbox/boost_python/distltbx_ext.o spotfinder/diffraction/geometry.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm g++ -o scitbx/array_family/tst_af_4.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_4.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_af_1 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_af_1.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread Create symlinks for: 'lib/smtbx_structure_factors_direct_ext.so.0.0.1' 'lib/smtbx_structure_factors_direct_ext.so.0'->'lib/smtbx_structure_factors_direct_ext.so.0.0.1' 'lib/smtbx_structure_factors_direct_ext.so'->'lib/smtbx_structure_factors_direct_ext.so.0.0.1' g++ -o scitbx/array_family/tst_af_5.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_5.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_mat3.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_mat3.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/regression_test_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=regression_test_ext.so.0 scitbx/array_family/boost_python/regression_test_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python315 -lm -lboost_numpy315 Create symlinks for: 'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1' 'scitbx/array_family/boost_python/regression_test_ext.so.0'->'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1' 'scitbx/array_family/boost_python/regression_test_ext.so'->'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1' g++ -o scitbx/array_family/tst_optional_copy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_optional_copy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/spotfinder_distltbx_ext.so.0.0.1' 'lib/spotfinder_distltbx_ext.so.0'->'lib/spotfinder_distltbx_ext.so.0.0.1' 'lib/spotfinder_distltbx_ext.so'->'lib/spotfinder_distltbx_ext.so.0.0.1' g++ -o scitbx/array_family/tst_rectangular_full_packed.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_rectangular_full_packed.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_refinement_least_squares_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_refinement_least_squares_ext.so.0 smtbx/refinement/boost_python/least_squares_ext.o smtbx/refinement/boost_python/weighting_schemes.o smtbx/refinement/boost_python/least_squares.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lsmtbx_refinement_constraints -lscitbx_boost_python -lcctbx -lboost_thread -lboost_python315 -lm g++ -o scitbx/array_family/tst_af_3 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_af_3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_rectangular_full_packed.cpp: In function ‘int main()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_rectangular_full_packed.cpp:52:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 52 | for(int i=0; i'lib/smtbx_refinement_least_squares_ext.so.0.0.1' 'lib/smtbx_refinement_least_squares_ext.so'->'lib/smtbx_refinement_least_squares_ext.so.0.0.1' g++ -o scitbx/array_family/tst_sym_mat3.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_sym_mat3.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_unsigned_float_arithmetic.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_unsigned_float_arithmetic.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_af_5 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_af_5.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm g++ -o scitbx/array_family/tst_mat3 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_mat3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm g++ -o scitbx/array_family/tst_vec3.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_vec3.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/error/tst_error.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Iscitbx/error -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error/tst_error.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_optional_copy -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_optional_copy.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o scitbx/fftpack/timing/fftpack_timer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/timing/fftpack_timer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_unsigned_float_arithmetic -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_unsigned_float_arithmetic.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o scitbx/fftpack/timing/test0.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/timing/test0.cpp g++ -o scitbx/array_family/tst_ref_matrix_facet -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_ref_matrix_facet.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/error/tst_error -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/error/tst_error.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o scitbx/lbfgs/sdrive_fem.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable scitbx/lbfgs/sdrive_fem.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lbfgs/tst_lbfgs.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgs/tst_lbfgs.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/complex_to_complex.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/timing/fftpack_timer.cpp:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/io.hpp:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/close_chain.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem.hpp:10, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include/scitbx/lbfgs_fem.hpp:1, from scitbx/lbfgs/sdrive_fem.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/complex_to_complex.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/complex_to_complex_3d.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/timing/test0.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp: In member function ‘void fem::common::getarg(int, fem::str_ref) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp:40:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/variant.hpp:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ g++ -o scitbx/array_family/tst_vec3 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_vec3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:8: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ g++ -o scitbx/lbfgsb/dev/driver1.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver1.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_sym_mat3 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_sym_mat3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm g++ -o scitbx/lbfgsb/dev/driver2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lbfgs/tst_lbfgs -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/lbfgs/tst_lbfgs.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm g++ -o scitbx/lbfgsb/dev/driver3.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver3.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lbfgs/sdrive_fem -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/lbfgs/sdrive_fem.o scitbx/lbfgs/lbfgs_fem.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/serialization/base_256.h:2, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/floating_point_epsilon.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver1.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver1.cpp:69:11: required from here 69 | setulb( | ~~~~~~^ 70 | n,m,x,l,u,nbd,f,g,factr,pgtol,wa,iwa,task,iprint, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | csave,lsave,isave,dsave); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::write_ref1(const std::string&, const ref1&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:974:19: required from ‘void scitbx::lbfgsb::raw::prn3lb(const int&, const ref1&, const FloatType&, const std::string&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const FloatType&, const FloatType&, const int&, const std::string&, const int&, const FloatType&, const FloatType&, const int&, const FloatType&, const FloatType&, const FloatType&) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 974 | write_ref1(" X =", x); | ~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3786:15: required from ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 3786 | prn3lb(n,x,f,task,iprint,info,itfile, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3787 | iter,nfgv,nintol,nskip,nact,sbgnrm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3788 | zero,nint,word,iback,stp,xstep,k, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3789 | cachyt,sbtime,lnscht); | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver1.cpp:69:11: required from here 69 | setulb( | ~~~~~~^ 70 | n,m,x,l,u,nbd,f,g,factr,pgtol,wa,iwa,task,iprint, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | csave,lsave,isave,dsave); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver2.cpp:102:19: required from here 102 | write_ref1(" ", x); | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver2.cpp:70:11: required from here 70 | setulb( | ~~~~~~^ 71 | n,m,x,l,u,nbd,f,g,factr,pgtol,wa,iwa,task,iprint, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | csave,lsave,isave,dsave); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver3.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::write_ref1(const std::string&, const ref1&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver3.cpp:82:19: required from here 82 | write_ref1(" ", wa.get1(j+1,n)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver3.cpp:72:11: required from here 72 | setulb( | ~~~~~~^ 73 | n,m,x,l,u,nbd,f,g,factr,pgtol,wa,iwa,task,iprint, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 | csave,lsave,isave,dsave); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/fftpack/timing/fftpack_timer -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/fftpack/timing/fftpack_timer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lomptbx -lm g++ -o scitbx/matrix/tests/tst_cholesky.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Iscitbx/matrix/tests -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/tests /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/tests/tst_cholesky.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/tests/tst -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/math/tests/tst.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o scitbx/matrix/tests/tst_givens.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Iscitbx/matrix/tests -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/tests /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/tests/tst_givens.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/spotfinder_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_array_family_flex_ext.so.0 spotfinder/array_family/flex_ext.o spotfinder/array_family/flex_distl_spot.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python315 -lm g++ -o scitbx/fftpack/timing/test0 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/fftpack/timing/test0.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lomptbx -lm g++ -o scitbx/matrix/tests/tst_householder.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Iscitbx/matrix/tests -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/tests /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/tests/tst_householder.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lbfgsb/dev/driver1 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/lbfgsb/dev/driver1.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_timer -lboost_chrono -lm g++ -o scitbx/matrix/tests/tst_svd.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Iscitbx/matrix/tests -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/tests /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/tests/tst_svd.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lbfgsb/dev/driver2 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/lbfgsb/dev/driver2.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_timer -lboost_chrono -lm g++ -o scitbx/serialization/tst_base_256.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Iscitbx/serialization -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/serialization /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/serialization/tst_base_256.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lbfgsb/dev/driver3 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/lbfgsb/dev/driver3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_timer -lboost_chrono -lm g++ -o scitbx/sparse/tests/tst_sparse.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Iscitbx/sparse/tests -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sparse/tests /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sparse/tests/tst_sparse.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/matrix/tests/tst_givens -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/matrix/tests/tst_givens.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/spotfinder_array_family_flex_ext.so.0.0.1' 'lib/spotfinder_array_family_flex_ext.so.0'->'lib/spotfinder_array_family_flex_ext.so.0.0.1' 'lib/spotfinder_array_family_flex_ext.so'->'lib/spotfinder_array_family_flex_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/tests/tst_reparametrisation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/tests/tst_reparametrisation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/serialization/tst_base_256 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/serialization/tst_base_256.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm g++ -o smtbx/refinement/constraints/tests/tst_special_position.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/tests/tst_special_position.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/matrix/tests/tst_cholesky -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/matrix/tests/tst_cholesky.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o xcif/benchmarks/bench_xcif.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/benchmarks/bench_xcif.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/matrix/tests/tst_svd -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/matrix/tests/tst_svd.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o xcif/regression/cpp/example_parse.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/example_parse.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/matrix/tests/tst_householder -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/matrix/tests/tst_householder.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o xcif/regression/cpp/example_tokenize.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/example_tokenize.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/benchmarks/bench_xcif -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/benchmarks/bench_xcif.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/fuzz_target.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/fuzz_target.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/example_tokenize -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/example_tokenize.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/example_parse -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/example_parse.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_data_model.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_data_model.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_error_handling.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_error_handling.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/sparse/tests/tst_sparse -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/sparse/tests/tst_sparse.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o xcif/regression/cpp/tst_infrastructure.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_infrastructure.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_infrastructure -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_infrastructure.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_mapped_file.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_mapped_file.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/fuzz_target -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/fuzz_target.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_non_strict_mode.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_non_strict_mode.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_error_handling -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_error_handling.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_mapped_file -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_mapped_file.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_numeric.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_numeric.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_quoted_string_delimiter.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_quoted_string_delimiter.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_data_model -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_data_model.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_semicolon_field_strict.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_semicolon_field_strict.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/tests/tst_special_position -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread smtbx/refinement/constraints/tests/tst_special_position.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread g++ -o smtbx/refinement/constraints/tests/tst_reparametrisation -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread smtbx/refinement/constraints/tests/tst_reparametrisation.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread g++ -o xcif/regression/cpp/tst_string_view.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_string_view.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/tests/tst_geometrical_hydrogens -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread g++ -o xcif/regression/cpp/tst_thread_safety.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_thread_safety.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_tokenizer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_tokenizer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_non_strict_mode -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_non_strict_mode.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_numeric -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_numeric.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_quoted_string_delimiter -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_quoted_string_delimiter.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_semicolon_field_strict -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_semicolon_field_strict.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_string_view -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_string_view.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_tokenizer -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_tokenizer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_thread_safety -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_thread_safety.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o scitbx/array_family/tst_af_4 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_af_4.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm scons: done building targets. usr+sys time: 54.51 seconds wall clock time: 17 minutes 42.76 seconds (1062.76 seconds total) I: pybuild base:383: cd '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build'_ && ./bin/libtbx.scons -j 8 scons: Reading SConscript files ... libtbx.scons: using flags from initial environment: CXXFLAGS = -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 CFLAGS = -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security CPPFLAGS = -Wdate-time -D_FORTIFY_SOURCE=2 LDFLAGS = -Wl,-z,relro -lhdf5_serial libtbx.scons: OpenMP is disabled. BOOST_PYTHON_LIB_VERSION: boost_python314 BOOST_NUMPY_LIB_VERSION: boost_numpy314 BOOST_VERSION: 109200 Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cbflib.tst_memory' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cctbx.getting_started' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cctbx.sym_equiv_sites' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cctbx.convert_ccp4_symop_lib' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cctbx.lattice_symmetry' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cctbx.find_distances' Ignored: [Errno 2] No such file or directory: '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/exe_dev/cctbx.sys_abs_equiv_space_groups' scons: done reading SConscript files. scons: Building targets ... g++ -o annlib_adaptbx/ann/ann_adaptor.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -Iannlib_adaptbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/src -Iannlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/ann/ann_adaptor.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o annlib_adaptbx/ann/boost_python/annlib_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/usr/include/python3.14 -Iannlib_adaptbx/ann/boost_python/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/ann/boost_python/src -Iannlib_adaptbx/ann/boost_python/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/ann/boost_python/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/ann/boost_python/annlib_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/blobs_cmd.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/blobs_cmd.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/asymmetric_map.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/asymmetric_map.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/skeletons.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/skeletons.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/dijkstra.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/dijkstra.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/xplor/map_reader.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/xplor/map_reader.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/xplor/map_writer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/xplor/map_writer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/cut.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/direct_space_asu/proto/cut.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/reference_table.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/direct_space_asu/proto/reference_table.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libiotbx_xplor.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libiotbx_xplor.so.0 iotbx/xplor/map_reader.o iotbx/xplor/map_writer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm Create symlinks for: 'lib/libiotbx_xplor.so.0.0.1' 'lib/libiotbx_xplor.so.0'->'lib/libiotbx_xplor.so.0.0.1' 'lib/libiotbx_xplor.so'->'lib/libiotbx_xplor.so.0.0.1' g++ -o cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/basic.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/basic.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/xray_scattering/it1992.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering/it1992.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/xray_scattering/wk1995.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering/wk1995.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/xray_scattering/n_gaussian_raw.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering/n_gaussian_raw.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/xray_scattering/n_gaussian.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering/n_gaussian.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/fp_fdp.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/fp_fdp.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_01_12.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke_tables_01_12.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_13_24.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke_tables_13_24.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_25_36.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke_tables_25_36.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_37_48.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke_tables_37_48.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_49_60.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke_tables_49_60.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_61_72.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke_tables_61_72.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_73_84.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke_tables_73_84.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/henke_tables_85_92.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/henke_tables_85_92.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/icsd_radii.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/icsd_radii.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/covalent_radii.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/covalent_radii.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/neutron.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/neutron.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/sasaki.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_01_12.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_01_12.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_13_24.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_13_24.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_25_36.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_25_36.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_37_48.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_37_48.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_49_60.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_49_60.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_61_72.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_61_72.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/sasaki_tables_73_82.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include cctbx/eltbx/sasaki_tables_73_82.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/tiny_pse.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/tiny_pse.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/wavelengths.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/wavelengths.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/electron_scattering/peng1996.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/electron_scattering/peng1996.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/attenuation_coefficient.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/attenuation_coefficient.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/bins.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/bins.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/index_generator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/index_generator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/index_span.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/index_span.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/match_bijvoet_mates.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match_bijvoet_mates.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/match_indices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match_indices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/match_multi_indices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match_multi_indices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/sym_equiv.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/sym_equiv.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/bricks.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/bricks.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/change_of_basis_op.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/find_affine.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/find_affine.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/group_codes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/group_codes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/hall_in.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/hall_in.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/lattice_tr.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/lattice_tr.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/lattice_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/lattice_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/miller.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/miller.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reciprocal_space_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/reciprocal_space_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reciprocal_space_ref_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/reciprocal_space_ref_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/rot_mx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/rot_mx_info.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx_info.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/row_echelon_solve.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/row_echelon_solve.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/rt_mx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rt_mx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/select_generators.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/select_generators.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/seminvariant.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/seminvariant.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/site_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/space_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/space_group_type.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group_type.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/symbols.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/symbols.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/tensor_rank_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensor_rank_2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/tr_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/tr_vec.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_vec.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/wyckoff.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/wyckoff.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reference_settings/hall_symbol_table.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/reference_settings/hall_symbol_table.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reference_settings/matrix_group_code_table.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/reference_settings/matrix_group_code_table.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reference_settings/normalizer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/reference_settings/normalizer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/reference_settings/wyckoff.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/reference_settings/wyckoff.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/uctbx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx/uctbx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/spoil_optimization.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx/spoil_optimization.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/crystal_orientation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx/crystal_orientation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o omptbx/stubs.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/omptbx/stubs.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/breadth_first_search_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/breadth_first_search_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/clustering_algorithm_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/clustering_algorithm_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libomptbx.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libomptbx.so.0 omptbx/stubs.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread Create symlinks for: 'lib/libomptbx.so.0.0.1' 'lib/libomptbx.so.0'->'lib/libomptbx.so.0.0.1' 'lib/libomptbx.so'->'lib/libomptbx.so.0.0.1' g++ -o boost_adaptbx/graph/connected_component_algorithm_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/connected_component_algorithm_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/graph_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/graph_structure_comparison_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_structure_comparison_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/maximum_clique_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/maximum_clique_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libcctbx.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libcctbx.so.0 cctbx/eltbx/basic.o cctbx/eltbx/xray_scattering/it1992.o cctbx/eltbx/xray_scattering/wk1995.o cctbx/eltbx/xray_scattering/n_gaussian_raw.o cctbx/eltbx/xray_scattering/n_gaussian.o cctbx/eltbx/fp_fdp.o cctbx/eltbx/henke.o cctbx/eltbx/henke_tables_01_12.o cctbx/eltbx/henke_tables_13_24.o cctbx/eltbx/henke_tables_25_36.o cctbx/eltbx/henke_tables_37_48.o cctbx/eltbx/henke_tables_49_60.o cctbx/eltbx/henke_tables_61_72.o cctbx/eltbx/henke_tables_73_84.o cctbx/eltbx/henke_tables_85_92.o cctbx/eltbx/icsd_radii.o cctbx/eltbx/covalent_radii.o cctbx/eltbx/neutron.o cctbx/eltbx/sasaki.o cctbx/eltbx/sasaki_tables_01_12.o cctbx/eltbx/sasaki_tables_13_24.o cctbx/eltbx/sasaki_tables_25_36.o cctbx/eltbx/sasaki_tables_37_48.o cctbx/eltbx/sasaki_tables_49_60.o cctbx/eltbx/sasaki_tables_61_72.o cctbx/eltbx/sasaki_tables_73_82.o cctbx/eltbx/tiny_pse.o cctbx/eltbx/wavelengths.o cctbx/eltbx/electron_scattering/peng1996.o cctbx/eltbx/attenuation_coefficient.o cctbx/miller/asu.o cctbx/miller/bins.o cctbx/miller/index_generator.o cctbx/miller/index_span.o cctbx/miller/match_bijvoet_mates.o cctbx/miller/match_indices.o cctbx/miller/match_multi_indices.o cctbx/miller/sym_equiv.o cctbx/sgtbx/bricks.o cctbx/sgtbx/change_of_basis_op.o cctbx/sgtbx/find_affine.o cctbx/sgtbx/group_codes.o cctbx/sgtbx/hall_in.o cctbx/sgtbx/lattice_tr.o cctbx/sgtbx/lattice_symmetry.o cctbx/sgtbx/miller.o cctbx/sgtbx/reciprocal_space_asu.o cctbx/sgtbx/reciprocal_space_ref_asu.o cctbx/sgtbx/rot_mx.o cctbx/sgtbx/rot_mx_info.o cctbx/sgtbx/row_echelon_solve.o cctbx/sgtbx/rt_mx.o cctbx/sgtbx/select_generators.o cctbx/sgtbx/seminvariant.o cctbx/sgtbx/site_symmetry.o cctbx/sgtbx/space_group.o cctbx/sgtbx/space_group_type.o cctbx/sgtbx/symbols.o cctbx/sgtbx/tensor_rank_2.o cctbx/sgtbx/tr_group.o cctbx/sgtbx/tr_vec.o cctbx/sgtbx/utils.o cctbx/sgtbx/wyckoff.o cctbx/sgtbx/reference_settings/hall_symbol_table.o cctbx/sgtbx/reference_settings/matrix_group_code_table.o cctbx/sgtbx/reference_settings/normalizer.o cctbx/sgtbx/reference_settings/wyckoff.o cctbx/uctbx/uctbx.o cctbx/uctbx/spoil_optimization.o cctbx/uctbx/crystal_orientation.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm Create symlinks for: 'lib/libcctbx.so.0.0.1' 'lib/libcctbx.so.0'->'lib/libcctbx.so.0.0.1' 'lib/libcctbx.so'->'lib/libcctbx.so.0.0.1' g++ -o boost_adaptbx/graph/metric_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/metric_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/breadth_first_search_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/clustering_algorithm_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/connected_component_algorithm_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_structure_comparison_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/maximum_clique_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/metric_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/graph/min_cut_max_flow_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/min_cut_max_flow_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/graph/utility_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/utility_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/hybrid_times_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/hybrid_times_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/meta_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/meta_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/optional_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/optional_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/min_cut_max_flow_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/graph_type.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/graph/utility_ext.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o boost_adaptbx/rational_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/rational_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/std_pair_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/std_pair_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/tests/boost_thread_test.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/tests/boost_thread_test.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/tests/python_streambuf_test_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/tests/python_streambuf_test_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/tests/tst_optional_copy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/tests/tst_optional_copy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o boost_adaptbx/tests/tst_optional_copy -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread boost_adaptbx/tests/tst_optional_copy.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o boost_adaptbx/tuple_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/boost_adaptbx/tuple_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/boost_python/cbflib_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DSWIG_PYTHON_STRICT_BYTE_CHAR -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx/detectors/boost_python/cbflib_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/buffer_based_service.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx/detectors/buffer_based_service.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/cbf_adaptor.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx/detectors/cbf_adaptor.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/cbf_byte_offset_optimized.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx/detectors/cbf_byte_offset_optimized.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/mar_adaptor.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include/hdf5/serial -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx/detectors/mar_adaptor.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cbflib_adaptbx/detectors/tst_memory.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DCBF_NO_REGEX -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx/detectors/tst_memory.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ gcc -o ccp4io_adaptbx/fortran_call_stubs.o -c -std=gnu17 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ccp4io -I. -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ccp4io_adaptbx/fortran_call_stubs.c gcc -o ccp4io_adaptbx/printf_wrappers.o -c -std=gnu17 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ccp4io -I. -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ccp4io_adaptbx/printf_wrappers.c g++ -o cctbx/adp_restraints/adp_restraints_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adp_restraints/adp_restraints_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/adp_restraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adp_restraints/adp_restraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/adp_similarity_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adp_restraints/adp_similarity_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/aniso_restraints_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adp_restraints/aniso_restraints_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/fixed_u_eq_adp_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adp_restraints/fixed_u_eq_adp_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/isotropic_adp_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adp_restraints/isotropic_adp_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libcctbx_sgtbx_asu.so.0.0.1 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread -shared -Wl,-z,relro -lhdf5_serial -Wl,-soname=libcctbx_sgtbx_asu.so.0 cctbx/sgtbx/direct_space_asu/proto/cut.o cctbx/sgtbx/direct_space_asu/proto/reference_table.o cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lm Create symlinks for: 'lib/libcctbx_sgtbx_asu.so.0.0.1' 'lib/libcctbx_sgtbx_asu.so.0'->'lib/libcctbx_sgtbx_asu.so.0.0.1' 'lib/libcctbx_sgtbx_asu.so'->'lib/libcctbx_sgtbx_asu.so.0.0.1' g++ -o lib/libasymmetric_map.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libasymmetric_map.so.0 cctbx/maptbx/asymmetric_map.o cctbx/maptbx/skeletons.o cctbx/maptbx/dijkstra.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lm Create symlinks for: 'lib/libasymmetric_map.so.0.0.1' 'lib/libasymmetric_map.so.0'->'lib/libasymmetric_map.so.0.0.1' 'lib/libasymmetric_map.so'->'lib/libasymmetric_map.so.0.0.1' g++ -o bin/cctbx_blobs -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/maptbx/blobs_cmd.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lasymmetric_map -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lm g++ -o cctbx/adp_restraints/rigid_bond_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adp_restraints/rigid_bond_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adp_restraints/rigu_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adp_restraints/rigu_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adptbx/boost_python/adptbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adptbx/boost_python/adptbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adptbx/boost_python/anharmonic_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adptbx/boost_python/anharmonic_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/adptbx/boost_python/hirshfeld.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/adptbx/boost_python/hirshfeld.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/array_family/boost_python/flex_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/array_family/boost_python/flex_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/array_family/boost_python/flex_hendrickson_lattman.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/array_family/boost_python/flex_hendrickson_lattman.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/array_family/boost_python/flex_miller_index.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/array_family/boost_python/flex_miller_index.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/array_family/boost_python/flex_xray_scatterer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/array_family/boost_python/flex_xray_scatterer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/boost_python/emma_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/boost_python/emma_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/boost_python/french_wilson_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/boost_python/french_wilson_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/boost_python/orientation_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/boost_python/orientation_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/boost_python/statistics_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/boost_python/statistics_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/covariance/boost_python/covariance_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/covariance/boost_python/covariance_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/asu_clusters_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/asu_clusters_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/close_packing_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/close_packing_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/coordination_sequences_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/coordination_sequences_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/crystal_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/crystal_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/direct_space_asu_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/incremental_pairs_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/incremental_pairs_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/neighbors_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/neighbors_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/pair_tables_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/pair_tables_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/site_cluster_analysis_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/site_cluster_analysis_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/crystal/symmetry_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/symmetry_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/dmtbx/boost_python/dmtbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/dmtbx/boost_python/dmtbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/dmtbx/boost_python/triplet_generator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/dmtbx/boost_python/triplet_generator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/dmtbx/boost_python/triplet_phase_relation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/dmtbx/boost_python/triplet_phase_relation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/attenuation_coefficient_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/attenuation_coefficient_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/chemical_elements_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/chemical_elements_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/covalent_radii_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/covalent_radii_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/fp_fdp_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/fp_fdp_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/henke_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/henke_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/icsd_radii_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/icsd_radii_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/neutron_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/neutron_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/sasaki_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/sasaki_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/tiny_pse_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/tiny_pse_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/wavelengths_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/wavelengths_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/eltbx/boost_python/xray_scattering_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/boost_python/xray_scattering_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/convert_ccp4_symop_lib.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples/convert_ccp4_symop_lib.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/find_distances.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples/find_distances.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/getting_started.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples/getting_started.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/lattice_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples/lattice_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/sym_equiv_sites.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples/sym_equiv_sites.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/examples/sys_abs_equiv_space_groups.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Icctbx/examples -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/examples/sys_abs_equiv_space_groups.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry/boost_python/geometry_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry/boost_python/geometry_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/angle_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/angle_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/bond_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/bond_similarity_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/restraints.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/angle.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/angle_bpl.cpp:13: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_misc.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_bpl.cpp:14: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::angle_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/angle_bpl.cpp:75:65: required from here 75 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 76 | "shared_angle_proxy") | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/geometry_restraints/bond_sorted_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_sorted_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_bpl.cpp:10: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::map; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_bpl.cpp:129:23: required from here 129 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 130 | "bond_params_table") | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::bond_simple_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_bpl.cpp:232:25: required from here 232 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 233 | "shared_bond_simple_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::bond_asu_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_bpl.cpp:340:25: required from here 340 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 341 | "shared_bond_asu_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/restraints.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_similarity.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp:12: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i, scitbx::af::trivial_accessor>&, const cctbx::geometry_restraints::bond_similarity_proxy&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_similarity.h:84:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 84 | for(int i=0;i, scitbx::af::trivial_accessor>&, const cctbx::geometry_restraints::bond_similarity_proxy&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_similarity.h:108:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 108 | for(int i=0;i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::bond_similarity_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp:55:44: required from here 54 | scitbx::af::boost_python::shared_wrapper< | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | bond_similarity_proxy, rir>::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 56 | "shared_bond_similarity_proxy"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared, 2> >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared, 2> >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny, 2>; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_similarity_bpl.cpp:79:54: required from here 78 | scitbx::af::boost_python::shared_wrapper< | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 | af::tiny, 2>, rbv>::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 80 | "sites_array"); | ~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/geometry_restraints/chirality_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/chirality_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_sorted.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_sorted_bpl.cpp:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu.h: In instantiation of ‘int cctbx::crystal::direct_space_asu::asu_mappings::find_i_sym(unsigned int, const cctbx::sgtbx::rt_mx&) const [with FloatType = double; IntShiftType = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/pair_tables.h:643:46: required from ‘bool cctbx::crystal::pair_asu_table::process_pair(unsigned int, unsigned int, const cctbx::sgtbx::rt_mx&) [with FloatType = double; IntShiftType = int]’ 643 | int j_sym = asu_mappings_->find_i_sym(j_seq, rt_mx_j); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/pair_tables.h:543:35: required from ‘cctbx::crystal::pair_asu_table& cctbx::crystal::pair_asu_table::add_pair(const scitbx::af::tiny&) [with FloatType = double; IntShiftType = int]’ 543 | bool is_new = process_pair(i_seqs[0], i_seqs[1], rt_mx_ji); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond_sorted.h:16:30: required from here 16 | pair_asu_table.add_pair(bond_simple_proxies[i].i_seqs); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu.h:859:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector, std::allocator > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 859 | for(int i_sym=0; i_sym, std::allocator > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 869 | for(int i_sym=0; i_sym::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/chirality_bpl.cpp:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::chirality_proxy; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/chirality_bpl.cpp:75:60: required from here 75 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 76 | "shared_chirality_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/geometry_restraints/motif_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/motif_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/nonbonded_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/restraints.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/dihedral.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp:12: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /usr/include/boost/python/tuple.hpp:10, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/shared_wrapper_pickle.hpp:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/angle_bpl.cpp:2: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp:13: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/proxy_select.h: In instantiation of ‘scitbx::af::shared cctbx::geometry_restraints::shared_proxy_remove(const scitbx::af::const_ref&, const scitbx::af::const_ref&) [with ProxyType = dihedral_proxy]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp:110:17: required from here 110 | shared_proxy_remove, ( | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/proxy_select.h:187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 187 | if (match_ctr != i_seqs.size()) { | ~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::dihedral_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/dihedral_bpl.cpp:84:65: required from here 84 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 85 | "shared_dihedral_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp:10: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::nonbonded_simple_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp:92:25: required from here 92 | shared_w_t::wrap("shared_nonbonded_simple_proxy") | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::nonbonded_asu_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_bpl.cpp:125:25: required from here 125 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 126 | "shared_nonbonded_asu_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/geometry_restraints/nonbonded_sorted_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_sorted_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/parallelity_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/parallelity_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/geometry_restraints/planarity_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/planarity_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_sorted.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_sorted_bpl.cpp:8: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::parallelity_proxy; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/parallelity_bpl.cpp:82:60: required from here 82 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 83 | "shared_parallelity_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/neighbors_fast.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/pair_tables.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_sorted.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicles.h: In instantiation of ‘scitbx::vec3 scitbx::cubicles::i_cubicle(const SiteType&) const [with SiteType = cctbx::cartesian; CubicleContentType = std::vector; FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/neighbors_fast.h:77:34: required from ‘cctbx::crystal::neighbors::fast_pair_generator::fast_pair_generator(const boost::shared_ptr >&, const FloatType&, bool, const FloatType&, const FloatType&) [with FloatType = double; IntShiftType = int]’ 77 | cubicles_.i_cubicle(mappings[mi.i_seq][mi.i_sym].mapped_site())); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/nonbonded_sorted.h:80:27: required from here 80 | min_cubicle_edge); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicles.h:176:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 176 | else if (j >= ref.accessor()[i]) j = ref.accessor()[i]-1; | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/planarity_bpl.cpp:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::geometry_restraints::planarity_proxy; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/planarity_bpl.cpp:62:23: required from here 62 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 63 | "shared_planarity_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/maptbx/asymmetric_map_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/asymmetric_map_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/bcr/bcr_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/bcr/bcr_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/coordinate_transformers.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/coordinate_transformers.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/grid_indices_around_sites.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/grid_indices_around_sites.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/grid_tags.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/grid_tags.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/gridding.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/gridding.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/maptbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/maptbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/misc.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/misc.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/peak_search.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/peak_search.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/pymol_interface.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/pymol_interface.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/statistics.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/statistics.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/maptbx/boost_python/structure_factors.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/maptbx/boost_python/structure_factors.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/masks/boost_python/masks_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/masks/boost_python/masks_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/math/boost_python/math_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/math/boost_python/math_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/math/time_trigonometry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/math/time_trigonometry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/merging/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/merging/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/math/time_trigonometry -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/math/time_trigonometry.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_timer -lm g++ -o cctbx/miller/boost_python/amplitude_normalisation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/amplitude_normalisation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/bins.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/bins.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/change_basis.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/change_basis.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/expand_to_p1.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/expand_to_p1.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/f_calc_map.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/f_calc_map.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/index_generator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/index_generator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/index_span.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/index_span.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/lookup_utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/lookup_utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/match_bijvoet_mates.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/match_bijvoet_mates.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/match_indices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/match_indices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/match_multi_indices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/match_multi_indices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/merge_equivalents.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/merge_equivalents.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/miller_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/miller_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/phase_integrator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/phase_integrator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/phase_transfer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/phase_transfer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/randomize_amplitude_and_phase.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/randomize_amplitude_and_phase.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/slices.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/slices.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/miller/boost_python/sym_equiv.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/boost_python/sym_equiv.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/multipolar/aspherical_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/multipolar/aspherical_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/brick.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/brick.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/change_of_basis.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/change_of_basis.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/find_affine.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/find_affine.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/lattice_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/lattice_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/phase_info.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/phase_info.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/reciprocal_space_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/reciprocal_space_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/rot_mx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/rot_mx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/rt_mx.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/rt_mx.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/search_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/search_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/select_generators.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/select_generators.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/seminvariant.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/seminvariant.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/sgtbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/sgtbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/site_symmetry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/site_symmetry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/space_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/space_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/space_group_type.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/space_group_type.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/sym_equiv_sites.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/sym_equiv_sites.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/symbols.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/symbols.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/tensor_rank_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/tensor_rank_2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/tensors.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/tensors.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/tr_vec.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/tr_vec.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/boost_python/wyckoff.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/boost_python/wyckoff.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/asu_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/direct_space_asu/proto/asu_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/tst_asu.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/direct_space_asu/proto/tst_asu.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/symmetry_search/boost_python/symmetry_search_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/symmetry_search/boost_python/symmetry_search_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/translation_search/boost_python/fast_nv1995.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/translation_search/boost_python/fast_nv1995.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/translation_search/boost_python/fast_terms.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/translation_search/boost_python/fast_terms.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/translation_search/boost_python/symmetry_flags.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/translation_search/boost_python/symmetry_flags.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/sgtbx/direct_space_asu/proto/tst_asu -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/sgtbx/direct_space_asu/proto/tst_asu.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lm g++ -o cctbx/translation_search/boost_python/translation_search_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/translation_search/boost_python/translation_search_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/boost_python/fast_minimum_reduction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx/boost_python/fast_minimum_reduction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/boost_python/niggli_reduction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx/boost_python/niggli_reduction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/boost_python/uctbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx/boost_python/uctbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/uctbx/determine_unit_cell/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_SINGLEFILE_NCDIST -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx/determine_unit_cell/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/conversions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/conversions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/curvatures_simple.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/curvatures_simple.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/each_hkl_gradients_direct.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/each_hkl_gradients_direct.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/extinction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/extinction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/f_model_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/f_model_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/fast_gradients.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/fast_gradients.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/curvatures_simple.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/curvatures_simple.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/sampling_base.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/fast_gradients.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/fast_gradients.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 16 | struct additive_sigma : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/sstream:42, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/f_model.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:18:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 18 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:31:27: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct average : std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:33:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/f_model.h: In instantiation of ‘cctbx::xray::f_model_core_data::f_model_core_data cctbx::xray::f_model_core_data::f_model_core_data::select(const scitbx::af::const_ref&) const [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/f_model_bpl.cpp:174:32: required from here 174 | .def("select", &w_t::select) | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/f_model.h:732:38: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 732 | CCTBX_ASSERT( iselection[ii]::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/parameter_map.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/parameter_map.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/sampled_model_density.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/sampled_model_density.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match_indices.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/lookup_utils.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:14, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/grouped_data.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:16:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 16 | struct additive_sigma : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/sstream:42, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:18:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 18 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:31:27: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct average : std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:33:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h: In instantiation of ‘FloatType cctbx::xray::grouped_data::merger::bic() [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/grouped_data.cpp:68:29: required from here 68 | .def("bic", &w_t::bic) | ^~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:257:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 257 | for (long int ii=0;ii::r_abs() [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/grouped_data.cpp:69:31: required from here 69 | .def("r_abs", &w_t::r_abs) | ^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:271:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 271 | for (long int ii=0;ii cctbx::xray::grouped_data::merger::combine_obs(long int) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:258:24: required from ‘FloatType cctbx::xray::grouped_data::merger::bic() [with FloatType = double]’ 258 | tmp_result = combine_obs( ii ); | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/grouped_data.cpp:68:29: required from here 68 | .def("bic", &w_t::bic) | ^~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:213:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 213 | for (int ii=1;ii::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 231 | for (int ii=1;ii::unmerged_data(scitbx::af::const_ref >, scitbx::af::const_ref >, const cctbx::sgtbx::space_group&, const bool&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value >&>; A2 = boost::python::objects::reference_to_value; A3 = boost::python::objects::reference_to_value; Value = cctbx::xray::grouped_data::unmerged_data; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<4>::apply::execute(PyObject*, t0, t1, t2, t3) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const scitbx::af::const_ref >&; t2 = const cctbx::sgtbx::space_group&; t3 = const bool&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; Arity = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector4 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&> >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&>; W = cctbx::xray::grouped_data::unmerged_data; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/grouped_data.cpp:27:15: required from here 26 | class_("unmerged_data", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 | .def(init< scitbx::af::const_ref< cctbx::miller::index<> > const&, | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 | scitbx::af::const_ref< cctbx::miller::index<> > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 | sgtbx::space_group const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 | bool const& | ~~~~~~~~~~~ 31 | > | ~ 32 | (( arg("hkl_obs"), | ~~~~~~~~~~~~~~~~~~ 33 | arg("asu_hkl"), | ~~~~~~~~~~~~~~~ 34 | arg("space_group"), | ~~~~~~~~~~~~~~~~~~~ 35 | arg("anomalous_flag") ))) | ~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:54:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 54 | for (int ii=0;ii >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 61 | for (int ii=0; ii >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | CCTBX_ASSERT( tmp_index < asu_hkl.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:67:11: note: in expansion of macro ‘CCTBX_ASSERT’ 67 | CCTBX_ASSERT( tmp_index < asu_hkl.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h: In instantiation of ‘cctbx::xray::grouped_data::merger::merger(scitbx::af::const_ref >, scitbx::af::const_ref, scitbx::af::const_ref, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value&>; A2 = boost::python::objects::reference_to_value&>; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value; A5 = boost::python::objects::reference_to_value; Value = cctbx::xray::grouped_data::merger; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<6>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const scitbx::af::const_ref&; t2 = const scitbx::af::const_ref&; t3 = const cctbx::sgtbx::space_group&; t4 = const bool&; t5 = const cctbx::uctbx::unit_cell&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; Arity = boost::mpl::size >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector6 >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&> >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const cctbx::sgtbx::space_group&, const bool&, const cctbx::uctbx::unit_cell&>; W = cctbx::xray::grouped_data::merger; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/grouped_data.cpp:54:15: required from here 53 | class_("merger", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 | .def(init< scitbx::af::const_ref< cctbx::miller::index<> > const&, | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | scitbx::af::const_ref< double > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | scitbx::af::const_ref< double > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 | sgtbx::space_group const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 | bool const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 | cctbx::uctbx::unit_cell const& | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 | > | ~ 61 | (( arg("hkl_obs"), | ~~~~~~~~~~~~~~~~~~ 62 | arg("i_obs"), | ~~~~~~~~~~~~~ 63 | arg("s_obs"), | ~~~~~~~~~~~~~ 64 | arg("space_group"), | ~~~~~~~~~~~~~~~~~~~ 65 | arg("anomalous_flag"), | ~~~~~~~~~~~~~~~~~~~~~~ 66 | arg("unit_cell") | ~~~~~~~~~~~~~~~~ 67 | ))) | ~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/grouped_data.h:151:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 151 | for (int ii=0;ii::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 167 | for (int ii=0; ii::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/scatterer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scatterer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/sampling_base.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/sampled_model_density.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/sampled_model_density.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/parameter_map.cpp:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/parameter_map.h: In instantiation of ‘void cctbx::xray::parameter_map::init_scatterer_part(const scitbx::af::const_ref&) [with XRayScattererType = cctbx::xray::scatterer<>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/parameter_map.h:54:7: required from ‘cctbx::xray::parameter_map::parameter_map(const scitbx::af::const_ref&) [with XRayScattererType = cctbx::xray::scatterer<>]’ 54 | init_scatterer_part(scatterers); | ^~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0) [with A0 = boost::python::objects::reference_to_value, scitbx::af::trivial_accessor>&>; Value = cctbx::xray::parameter_map >; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<1>::apply::execute(PyObject*, t0) [with Holder = boost::python::objects::value_holder > >; ArgList = boost::mpl::vector1, scitbx::af::trivial_accessor>&>; PyObject = _object; t0 = const scitbx::af::const_ref, scitbx::af::trivial_accessor>&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector1, scitbx::af::trivial_accessor>&>; Arity = boost::mpl::size, scitbx::af::trivial_accessor>&> >; Holder = boost::python::objects::value_holder > >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedT = boost::python::init, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >; classT = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedVisitor = boost::python::init, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init, scitbx::af::trivial_accessor>&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>; W = cctbx::xray::parameter_map >; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/parameter_map.cpp:46:11: required from ‘static void cctbx::xray::boost_python::parameter_map_wrapper::wrap(const char*) [with XRayScattererType = cctbx::xray::scatterer<>]’ 45 | class_("parameter_map", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 | .def(init const &>(( | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 | arg("scatterers")))) | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/parameter_map.cpp:60:50: required from here 60 | parameter_map_wrapper >::wrap("parameter_map"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/parameter_map.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref, scitbx::af::trivial_accessor>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 61 | for(int i_sc=0; i_sc < scatterers.size(); ++i_sc) { | ~~~~~^~~~~~~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/scatterer_flags.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scatterer_flags.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/sampling_base.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/sampling_base.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/scattering_type_registry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer_utils.h: In instantiation of ‘static void cctbx::xray::inelastic_form_factors::set(const scitbx::af::ref&, float, bool) [with ScattererType = cctbx::xray::scatterer<>; TableType = cctbx::eltbx::henke::table]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scatterer.cpp:349:54: required from here 349 | inelastic_form_factors::set, | ^~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer_utils.h:426:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 426 | for (int i=0; i < scatterers.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer_utils.h: In instantiation of ‘static void cctbx::xray::inelastic_form_factors::set(const scitbx::af::ref&, float, bool) [with ScattererType = cctbx::xray::scatterer<>; TableType = cctbx::eltbx::sasaki::table]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scatterer.cpp:353:55: required from here 353 | inelastic_form_factors::set, | ^~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer_utils.h:426:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 426 | for (int i=0; i < scatterers.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scatterer_flags.cpp:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensor_rank_2.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = cctbx::xray::scatterer_flags; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scatterer_flags.cpp:142:44: required from here 140 | class_ wrapper = scitbx::af::boost_python::shared_wrapper< | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 | scatterer_flags, | ~~~~~~~~~~~~~~~~ 142 | return_internal_reference<> >::wrap("shared_scatterer_flags"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/xray/boost_python/structure_factors_simple.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/structure_factors_simple.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 49 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/16/memory:80, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/misc.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer_flags.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:4: /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp: In static member function ‘static std::auto_ptr cctbx::xray::boost_python::{anonymous}::scattering_type_registry_wrappers::constructor_for_pickle(const boost::python::dict&, const boost::python::list&, const cctbx::xray::scattering_type_registry::unique_counts_t&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/scattering_type_registry.cpp:55:12: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 55 | std::auto_ptr self(new w_t); | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/targets.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/targets.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/structure_factors_direct.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/structure_factors_direct.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/structure_factors_simple.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/structure_factors_simple.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/uctbx.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_constraints.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:50:33: required from ‘scitbx::af::small::small(const OtherElementType*, const OtherElementType*) [with OtherElementType = float; ElementType = double; long unsigned int N = 10]’ 50 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/eltbx/xray_scattering.h:155:11: required from ‘cctbx::eltbx::xray_scattering::gaussian cctbx::eltbx::xray_scattering::base::fetch() const [with long unsigned int N = 4]’ 155 | small_t(entry_->a, entry_->a+N), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scattering_type_registry.h:192:40: required from here 191 | ugs[ui] = eltbx::xray_scattering::it1992( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 | pair->first, exact).fetch(); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:69:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 69 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o cctbx/xray/boost_python/twin_components.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_components.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/boost_python/twin_targets.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_wrapper.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_components.cpp:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:300:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_variable_capacity::tuple_mapping_variable_capacity() [with ContainerType = scitbx::af::shared*>]’ 300 | tuple_mapping< | ^~~~~~~~~~~~~~ 301 | ContainerType, | ~~~~~~~~~~~~~~ 302 | variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_components.cpp:91:77: required from here 91 | tuple_mapping_variable_capacity *> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::shared*>; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:300:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_variable_capacity::tuple_mapping_variable_capacity() [with ContainerType = scitbx::af::shared*>]’ 300 | tuple_mapping< | ^~~~~~~~~~~~~~ 301 | ContainerType, | ~~~~~~~~~~~~~~ 302 | variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_components.cpp:92:78: required from here 92 | tuple_mapping_variable_capacity *> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o cctbx/xray/boost_python/xray_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/xray_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/observations/boost_python/observations.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/observations/boost_python/observations.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/observations/boost_python/observations_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/observations/boost_python/observations_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o cctbx/xray/targets/shelxl_wght_ls_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/targets/shelxl_wght_ls_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match_indices.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/lookup_utils.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:14, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:16:34: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 16 | struct additive_sigma : std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/string:52, from /usr/include/c++/16/bits/locale_classes.h:43, from /usr/include/c++/16/bits/ios_base.h:43, from /usr/include/c++/16/ios:46, from /usr/include/c++/16/istream:42, from /usr/include/c++/16/sstream:42, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:4: /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:18:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 18 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:31:27: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 31 | struct average : std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/match.h:33:20: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 33 | typedef std::binary_function base_type; | ^~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_function.h:134:12: note: declared here 134 | struct binary_function | ^~~~~~~~~~~~~~~ g++ -o chiltbx/handle_test.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/chiltbx/handle_test.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘scitbx::af::shared cctbx::xray::twin_targets::twin_completion::get_free_model_selection(scitbx::af::const_ref >, const scitbx::af::const_ref&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:42:50: required from here 42 | .def("get_free_model_selection", &w_t::get_free_model_selection) | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:128:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 128 | CCTBX_ASSERT( index < flags.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:128:11: note: in expansion of macro ‘CCTBX_ASSERT’ 128 | CCTBX_ASSERT( index < flags.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_intensity_abs(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:182:39: required from here 182 | .def("r_intensity_abs", &w_t::r_intensity_abs, | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:559:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 559 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:559:6: note: in expansion of macro ‘CCTBX_ASSERT’ 559 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:560:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 560 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:560:6: note: in expansion of macro ‘CCTBX_ASSERT’ 560 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:561:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 561 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:561:6: note: in expansion of macro ‘CCTBX_ASSERT’ 561 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_intensity_sq(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:189:38: required from here 189 | .def("r_intensity_sq", &w_t::r_intensity_sq, | ^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:604:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 604 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:604:6: note: in expansion of macro ‘CCTBX_ASSERT’ 604 | CCTBX_ASSERT( obs_size_ == i_obs.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:605:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 605 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:605:6: note: in expansion of macro ‘CCTBX_ASSERT’ 605 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:606:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 606 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:606:6: note: in expansion of macro ‘CCTBX_ASSERT’ 606 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_amplitude_abs(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:196:39: required from here 196 | .def("r_amplitude_abs", &w_t::r_amplitude_abs, | ^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:649:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 649 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:649:6: note: in expansion of macro ‘CCTBX_ASSERT’ 649 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:650:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 650 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:650:6: note: in expansion of macro ‘CCTBX_ASSERT’ 650 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:651:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 651 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:651:6: note: in expansion of macro ‘CCTBX_ASSERT’ 651 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘FloatType cctbx::xray::twin_targets::hemihedral_r_values::r_amplitude_sq(const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:203:38: required from here 203 | .def("r_amplitude_sq", &w_t::r_amplitude_sq, | ^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:697:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 697 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:697:6: note: in expansion of macro ‘CCTBX_ASSERT’ 697 | CCTBX_ASSERT( obs_size_ == f_obs.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:698:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 698 | CCTBX_ASSERT( calc_size_ == f_model.size() ); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:698:6: note: in expansion of macro ‘CCTBX_ASSERT’ 698 | CCTBX_ASSERT( calc_size_ == f_model.size() ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:699:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 699 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:699:6: note: in expansion of macro ‘CCTBX_ASSERT’ 699 | CCTBX_ASSERT( (obs_size_ == selection.size()) || (selection.size()==0) ); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘scitbx::af::tiny, 2> cctbx::xray::twin_targets::hemihedral_detwinner::detwin_with_model_data(const scitbx::af::const_ref&, const scitbx::af::const_ref&, const scitbx::af::const_ref >&, const FloatType&) const [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:263:45: required from here 263 | result = self.detwin_with_model_data(i_obs,sig_obs,f_model,twin_fraction); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:997:45: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 997 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:997:19: note: in expansion of macro ‘CCTBX_ASSERT’ 997 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:1003:47: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 1003 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:1003:19: note: in expansion of macro ‘CCTBX_ASSERT’ 1003 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:1006:41: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 1006 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:1006:13: note: in expansion of macro ‘CCTBX_ASSERT’ 1006 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:1010:47: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 1010 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:1010:19: note: in expansion of macro ‘CCTBX_ASSERT’ 1010 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘scitbx::af::tiny, 2> cctbx::xray::twin_targets::hemihedral_detwinner::detwin_with_model_data(const scitbx::af::const_ref&, const scitbx::af::const_ref&, const scitbx::af::const_ref&, const FloatType&) const [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:275:45: required from here 275 | result = self.detwin_with_model_data(i_obs,sig_obs,f_model,twin_fraction); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:936:43: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 936 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:936:17: note: in expansion of macro ‘CCTBX_ASSERT’ 936 | CCTBX_ASSERT(i_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:942:47: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 942 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:942:19: note: in expansion of macro ‘CCTBX_ASSERT’ 942 | CCTBX_ASSERT(sig_obs.size() > loc_twin_obs); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:945:45: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 945 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:945:17: note: in expansion of macro ‘CCTBX_ASSERT’ 945 | CCTBX_ASSERT(f_model.size() > loc_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:948:45: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 948 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:948:17: note: in expansion of macro ‘CCTBX_ASSERT’ 948 | CCTBX_ASSERT(f_model.size() > loc_twin_calc); // XXX trap for long standing seg. fault bug | ^~~~~~~~~~~~ g++ -o chiltbx/handle_test -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread chiltbx/handle_test.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o cma_es/cma/cmaes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cma_es/cma/cmaes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h: In instantiation of ‘cctbx::xray::twin_targets::hemihedral_r_values::hemihedral_r_values(const scitbx::af::const_ref >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value >&>; A2 = boost::python::objects::reference_to_value; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value&>; Value = cctbx::xray::twin_targets::hemihedral_r_values; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<5>::apply::execute(PyObject*, t0, t1, t2, t3, t4) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const scitbx::af::const_ref >&; t2 = const cctbx::sgtbx::space_group&; t3 = const bool&; t4 = const scitbx::mat3&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; Arity = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector5 >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; NArgs = boost::mpl::size >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&> >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::const_ref >&, const cctbx::sgtbx::space_group&, const bool&, const scitbx::mat3&>; W = cctbx::xray::twin_targets::hemihedral_r_values; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:169:13: required from here 168 | class_("hemihedral_r_values", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 | .def(init< | ~~~~^~~~~~ 170 | scitbx::af::const_ref< cctbx::miller::index<> > const&, // 1 obs indices | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | scitbx::af::const_ref< cctbx::miller::index<> > const&, // 2 calc indices | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | sgtbx::space_group const&, // 3 space group | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 | bool const&, // 4 anomalous flag | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 | scitbx::mat3 const& // 5 twin law | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 | > | ~ 176 | ((arg("hkl_obs"), | ~~~~~~~~~~~~~~~~~ 177 | arg("hkl_calc"), | ~~~~~~~~~~~~~~~~ 178 | arg("space_group"), | ~~~~~~~~~~~~~~~~~~~ 179 | arg("anomalous_flag"), | ~~~~~~~~~~~~~~~~~~~~~~ 180 | arg("twin_law") | ~~~~~~~~~~~~~~~ 181 | ))) | ~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:544:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 544 | for (long ii=0;ii::refine(const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/quadrature.h:523:14: required from ‘scitbx::math::quadrature::gauss_legendre_engine::gauss_legendre_engine(const int&) [with FloatType = double]’ 523 | x = refine( start_guess ); | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/twin_targets.h:1070:68: required from ‘cctbx::xray::twin_targets::single_twin_likelihood::single_twin_likelihood(const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const FloatType&, const bool&, const bool&, const FloatType&, const FloatType&, const FloatType&, const int&) [with FloatType = double]’ 1070 | scitbx::math::quadrature::gauss_legendre_engine tmp_gle(n_quad_); | ^~~~~~~ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5, A6, A7, A8, A9, A10, A11, A12, A13) [with A0 = boost::python::objects::reference_to_value; A1 = boost::python::objects::reference_to_value; A2 = boost::python::objects::reference_to_value; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value; A5 = boost::python::objects::reference_to_value; A6 = boost::python::objects::reference_to_value; A7 = boost::python::objects::reference_to_value; A8 = boost::python::objects::reference_to_value; A9 = boost::python::objects::reference_to_value; A10 = boost::python::objects::reference_to_value; A11 = boost::python::objects::reference_to_value; A12 = boost::python::objects::reference_to_value; A13 = boost::python::objects::reference_to_value; Value = cctbx::xray::twin_targets::single_twin_likelihood; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<14>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5, t6, t7, t8, t9, t10, t11, t12, t13) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector14; PyObject = _object; t0 = const double&; t1 = const double&; t2 = const double&; t3 = const double&; t4 = const double&; t5 = const double&; t6 = const double&; t7 = const double&; t8 = const bool&; t9 = const bool&; t10 = const double&; t11 = const double&; t12 = const double&; t13 = const int&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector14; NArgs = boost::mpl::size >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init; W = cctbx::xray::twin_targets::single_twin_likelihood; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/boost_python/twin_targets.cpp:343:14: required from here 342 | class_("single_twin_likelihood", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 | .def(init< | ~~~~^~~~~~ 344 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 | bool const&, bool const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 | double const&, double const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 | double const&, int const& | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 | > | ~ 352 | ((arg("i_obs1"), arg("s_obs1"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 | arg("i_obs2"), arg("s_obs2"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 | arg("f_calc1"), arg("f_calc2"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 | arg("eps1"), arg("eps2"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 | arg("centric1"),arg("centric2"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 | arg("alpha"), arg("beta"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 | arg("twin_fraction"), arg("n_quad") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 | )) | ~~ 360 | ) | ~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/quadrature.h:546:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 546 | for (int ii=0;ii >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/variant.hpp:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:8: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/boost_python/compression.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc: In function ‘unsigned int dxtbx::boost_python::cbf_decompress(const char*, std::size_t, int*, std::size_t)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:124:50: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 124 | while ((j < packed_sz) && ((values - original) < values_sz)) { | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc: In function ‘void dxtbx::boost_python::rod_TY5_TY6_decompress(int*, const char*, const char*, int, int, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:207:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 207 | for (size_t iy = 0; iy < slow; iy++) { | ~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:228:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 228 | for (int k = 0; k < nblock; k++) { | ~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:254:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 254 | for (int j = 0; j < nbit; j++) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:261:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 261 | for (int j = 0; j < BLOCKSIZE; j++) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/compression.cc:282:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 282 | for (int i = 0; i < nrest; i++) { | ~~^~~~~~~ g++ -o dxtbx/src/dxtbx/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/boost_python/flumpy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fvisibility=hidden -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/boost_python/imageset_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp: In function ‘scitbx::af::flex_int dxtbx::boost_python::uncompress(const boost::python::api::object&, const int&, const int&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:183:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 183 | DXTBX_ASSERT(nn == (slow * fast)); | ~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:183:5: note: in expansion of macro ‘DXTBX_ASSERT’ 183 | DXTBX_ASSERT(nn == (slow * fast)); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp: In function ‘void dxtbx::boost_python::radial_average(scitbx::af::versa >&, scitbx::af::versa >&, const scitbx::vec2&, scitbx::af::shared, scitbx::af::shared, scitbx::af::shared, double, double, const scitbx::vec2&, const scitbx::vec2&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:218:43: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 218 | for (std::size_t y = upper_left[1]; y < lower_right[1]; y++) { /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/ext.cpp:219:45: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 219 | for (std::size_t x = upper_left[0]; x < lower_right[0]; x++) { g++ -o dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/format/boost_python/image_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/format/boost_python/nexus_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/nexus_ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = bool; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:247:31: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 247 | return get_buffer_specific(obj); | ~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = long unsigned int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:247:31: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 247 | return get_buffer_specific(obj); | ~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = unsigned char; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = short unsigned int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.cpp:10:1: warning: ‘typedef’ was ignored in this declaration 10 | typedef struct cbf_handle_struct; | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = unsigned int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = long int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = signed char; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = short int; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = float; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid) [with T = double; grid = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:64:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < flex.accessor().nd(); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:66:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 66 | for (int j = i + 1; j < flex.accessor().nd(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:88:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 88 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:90:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 90 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = int; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:88:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 88 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:90:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 90 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:138:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 138 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:140:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 140 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:166:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 166 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:168:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 168 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = long unsigned int; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:191:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 191 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:193:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 193 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = double; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:215:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 215 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:217:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 217 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc: In instantiation of ‘pybind11::buffer_info get_buffer_specific(grid >) [with T = int; grid > = scitbx::af::versa, scitbx::af::flex_grid<> >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: recursively required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ 249 | return get_buffer(ptr); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:249:32: required from ‘pybind11::buffer_info get_buffer(PyObject*) [with T = scitbx::af::versa >; Q = scitbx::af::versa >; Args = {scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >, scitbx::af::versa, scitbx::af::flex_grid > >}; PyObject = _object]’ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:254:36: required from here 254 | return get_buffer(obj.ptr()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:113:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 113 | for (int i = 0; i < dim_sizes.size(); ++i) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/flumpy.cc:115:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 115 | for (int j = i + 1; j < dim_sizes.size(); ++j) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:24, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:25: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘std::shared_ptr > dxtbx::format::boost_python::make_image_from_tuple(boost::python::tuple) [with T = bool]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:125:40: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = bool]’ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:141:24: required from here 141 | image_wrapper("ImageBool"); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:51:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 51 | for (std::size_t i = 0; i < boost::python::len(data); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:27: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘std::shared_ptr > dxtbx::format::boost_python::make_image_from_tuple(boost::python::tuple) [with T = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:125:40: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = int]’ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:142:23: required from here 142 | image_wrapper("ImageInt"); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:51:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 51 | for (std::size_t i = 0; i < boost::python::len(data); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘std::shared_ptr > dxtbx::format::boost_python::make_image_from_tuple(boost::python::tuple) [with T = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:125:40: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = double]’ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:143:26: required from here 143 | image_wrapper("ImageDouble"); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:51:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 51 | for (std::size_t i = 0; i < boost::python::len(data); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘static void dxtbx::format::boost_python::ImagePickleSuite::setstate(dxtbx::format::Image&, boost::python::tuple) [with T = bool]’: /usr/include/boost/python/class.hpp:345:9: required from ‘boost::python::class_::self& boost::python::class_::def_pickle(const PickleSuiteType&) [with PickleSuiteType = dxtbx::format::boost_python::ImagePickleSuite; W = dxtbx::format::Image; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 345 | &PickleSuiteType::setstate, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:134:18: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = bool]’ 122 | class_(name) | ~~~~~~~~~~~~~~~~~~~~~~~~ 123 | .def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~ 124 | .def("__init__", make_constructor(&make_image_from_flex)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 | .def("__getitem__", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 | .def("tile", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | .def("tile_names", &image_type::tile_names) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 | .def("n_tiles", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("empty", &image_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("append", &image_type::push_back) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("__len__", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | .def("__iter__", range(&image_type::begin, &image_type::end)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def_pickle(ImagePickleSuite()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:141:24: required from here 141 | image_wrapper("ImageBool"); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:98:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 98 | for (std::size_t i = 0; i < boost::python::len(tile_list); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘static void dxtbx::format::boost_python::ImagePickleSuite::setstate(dxtbx::format::Image&, boost::python::tuple) [with T = int]’: /usr/include/boost/python/class.hpp:345:9: required from ‘boost::python::class_::self& boost::python::class_::def_pickle(const PickleSuiteType&) [with PickleSuiteType = dxtbx::format::boost_python::ImagePickleSuite; W = dxtbx::format::Image; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 345 | &PickleSuiteType::setstate, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:134:18: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = int]’ 122 | class_(name) | ~~~~~~~~~~~~~~~~~~~~~~~~ 123 | .def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~ 124 | .def("__init__", make_constructor(&make_image_from_flex)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 | .def("__getitem__", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 | .def("tile", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | .def("tile_names", &image_type::tile_names) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 | .def("n_tiles", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("empty", &image_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("append", &image_type::push_back) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("__len__", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | .def("__iter__", range(&image_type::begin, &image_type::end)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def_pickle(ImagePickleSuite()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:142:23: required from here 142 | image_wrapper("ImageInt"); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:98:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 98 | for (std::size_t i = 0; i < boost::python::len(tile_list); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc: In instantiation of ‘static void dxtbx::format::boost_python::ImagePickleSuite::setstate(dxtbx::format::Image&, boost::python::tuple) [with T = double]’: /usr/include/boost/python/class.hpp:345:9: required from ‘boost::python::class_::self& boost::python::class_::def_pickle(const PickleSuiteType&) [with PickleSuiteType = dxtbx::format::boost_python::ImagePickleSuite; W = dxtbx::format::Image; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 345 | &PickleSuiteType::setstate, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:134:18: required from ‘void dxtbx::format::boost_python::image_wrapper(const char*) [with T = double]’ 122 | class_(name) | ~~~~~~~~~~~~~~~~~~~~~~~~ 123 | .def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~ 124 | .def("__init__", make_constructor(&make_image_from_flex)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | .def("__init__", make_constructor(&make_image_from_tuple)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 | .def("__getitem__", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 | .def("tile", &image_type::tile) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | .def("tile_names", &image_type::tile_names) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 | .def("n_tiles", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("empty", &image_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("append", &image_type::push_back) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("__len__", &image_type::n_tiles) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | .def("__iter__", range(&image_type::begin, &image_type::end)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def_pickle(ImagePickleSuite()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:143:26: required from here 143 | image_wrapper("ImageDouble"); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/format/boost_python/image_ext.cc:98:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 98 | for (std::size_t i = 0; i < boost::python::len(tile_list); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/masking/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/boost_python/ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/beam.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/crystal.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/detector.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/experiment.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/goniometer_shadow_masking.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:30: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_circle(scitbx::af::ref >, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:79:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 79 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:80:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 80 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_polygon(scitbx::af::ref >, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:143:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 143 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:144:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 144 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In member function ‘dxtbx::format::ImageBuffer dxtbx::ImageSet::get_raw_data(std::size_t)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:651:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 651 | if (data_cache_.index == index) { | ~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In member function ‘dxtbx::format::Image dxtbx::ImageSet::get_raw_data_as_double(std::size_t)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1119:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1119 | if (double_raw_data_cache_.index == index) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: At global scope: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1066:20: warning: ‘virtual dxtbx::ImageSet dxtbx::ImageSet::partial_set(boost::python::api::object, std::size_t, std::size_t) const’ was hidden [-Woverloaded-virtual=] 1066 | virtual ImageSet partial_set(boost::python::object reader, | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1206:12: note: by ‘dxtbx::ImageSet dxtbx::ImageGrid::partial_set(std::size_t, std::size_t) const’ 1206 | ImageSet partial_set(std::size_t first, std::size_t last) const { | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageGrid::ImageGrid(const dxtbx::ImageSetData&, scitbx::af::int2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1142:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1142 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1142:5: note: in expansion of macro ‘DXTBX_ASSERT’ 1142 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageGrid::ImageGrid(const dxtbx::ImageSetData&, const scitbx::af::const_ref&, scitbx::af::int2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1156:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1156 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1156:5: note: in expansion of macro ‘DXTBX_ASSERT’ 1156 | DXTBX_ASSERT(grid_size[0] * grid_size[1] == size()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: At global scope: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1066:20: warning: ‘virtual dxtbx::ImageSet dxtbx::ImageSet::partial_set(boost::python::api::object, std::size_t, std::size_t) const’ was hidden [-Woverloaded-virtual=] 1066 | virtual ImageSet partial_set(boost::python::object reader, | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1477:12: note: by ‘dxtbx::ImageSet dxtbx::ImageSequence::partial_set(std::size_t, std::size_t) const’ 1477 | ImageSet partial_set(std::size_t first, std::size_t last) const { | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageSequence::ImageSequence(const dxtbx::ImageSetData&, const dxtbx::ImageSet::beam_ptr&, const dxtbx::ImageSet::detector_ptr&, const dxtbx::ImageSet::goniometer_ptr&, const dxtbx::ImageSet::scan_ptr&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1241:23: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1241 | if (data.size() != scan->get_num_images()) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In constructor ‘dxtbx::ImageSequence::ImageSequence(const dxtbx::ImageSetData&, const scitbx::af::const_ref&, const dxtbx::ImageSet::beam_ptr&, const dxtbx::ImageSet::detector_ptr&, const dxtbx::ImageSet::goniometer_ptr&, const dxtbx::ImageSet::scan_ptr&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1280:26: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 1280 | if (indices.size() != scan->get_num_images()) { | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In member function ‘void dxtbx::ImageSequence::set_scan(const dxtbx::ImageSet::scan_ptr&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1402:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1402 | if (scan->get_num_images() != size()) { | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1418:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 1418 | DXTBX_ASSERT(scan->get_num_images() == size()); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:1418:5: note: in expansion of macro ‘DXTBX_ASSERT’ 1418 | DXTBX_ASSERT(scan->get_num_images() == size()); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/boost_python/ext.cc:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:17: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In instantiation of ‘dxtbx::format::Image dxtbx::ImageSetData::get_image_from_tuple(boost::python::tuple) [with T = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:469:56: required from here 469 | buffer = ImageBuffer(get_image_from_tuple(obj)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:505:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 505 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In instantiation of ‘dxtbx::format::Image dxtbx::ImageSetData::get_image_from_tuple(boost::python::tuple) [with T = float]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:471:55: required from here 471 | buffer = ImageBuffer(get_image_from_tuple(obj)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:505:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 505 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h: In instantiation of ‘dxtbx::format::Image dxtbx::ImageSetData::get_image_from_tuple(boost::python::tuple) [with T = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:473:53: required from here 473 | buffer = ImageBuffer(get_image_from_tuple(obj)); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/imageset.h:505:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 505 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_circle(scitbx::af::ref >, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:79:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 79 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:80:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 80 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h: In function ‘void dxtbx::masking::mask_untrusted_polygon(scitbx::af::ref >, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:143:32: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 143 | for (std::size_t j = y0; j < y1; ++j) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/masking/masking.h:144:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 144 | for (std::size_t i = x0; i < x1; ++i) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::BeamBase; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:250:56: required from here 250 | ImageSetDataPickleSuite::set_model_list( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 251 | obj, | ~~~~ 252 | boost::python::extract(models[0])(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 | &ImageSetData::set_beam); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:232:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 232 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:236:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 236 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::Detector; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:254:56: required from here 254 | ImageSetDataPickleSuite::set_model_list( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 255 | obj, | ~~~~ 256 | boost::python::extract(models[1]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 | &ImageSetData::set_detector); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:232:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 232 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:236:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 236 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::Goniometer; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:258:58: required from here 258 | ImageSetDataPickleSuite::set_model_list( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 259 | obj, | ~~~~ 260 | boost::python::extract(models[2]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 | &ImageSetData::set_goniometer); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:232:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 232 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:236:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 236 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc: In instantiation of ‘static void dxtbx::boost_python::ImageSetDataPickleSuite::set_model_list(dxtbx::ImageSetData&, boost::python::tuple, Func) [with Model = dxtbx::model::Scan; Func = void (dxtbx::ImageSetData::*)(const std::shared_ptr&, long unsigned int)]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:262:52: required from here 262 | ImageSetDataPickleSuite::set_model_list( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 263 | obj, | ~~~~ 264 | boost::python::extract(models[3]), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 | &ImageSetData::set_scan); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:232:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 232 | for (std::size_t i = 0; i < boost::python::len(models); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/boost_python/imageset_ext.cc:236:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 236 | for (std::size_t i = 0; i < boost::python::len(indices); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:17: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:17: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc: In function ‘void dxtbx::model::boost_python::Crystal_set_A_at_scan_points_from_tuple(dxtbx::model::CrystalBase&, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc:119:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 119 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc: In function ‘void dxtbx::model::boost_python::Crystal_set_A_at_scan_points_from_list(dxtbx::model::CrystalBase&, boost::python::list)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc:129:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 129 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc: In function ‘void dxtbx::model::boost_python::Crystal_set_B_covariance_from_tuple(dxtbx::model::CrystalBase&, boost::python::api::object)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/crystal.cc:141:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 141 | for (std::size_t i = 0; i < boost::python::len(obj); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc: In function ‘void dxtbx::model::boost_python::beam_detail::Beam_set_s0_at_scan_points_from_tuple(dxtbx::model::Beam&, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:209:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 209 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc: In function ‘void dxtbx::model::boost_python::beam_detail::Beam_set_s0_at_scan_points_from_list(dxtbx::model::Beam&, boost::python::list)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:219:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 219 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc: In static member function ‘static boost::python::tuple dxtbx::model::boost_python::PolychromaticBeamPickleSuite::getstate(boost::python::api::object)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:302:32: warning: unused variable ‘beam’ [-Wunused-variable] 302 | const PolychromaticBeam &beam = | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc: In static member function ‘static void dxtbx::model::boost_python::PolychromaticBeamPickleSuite::setstate(boost::python::api::object, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/beam.cc:308:26: warning: unused variable ‘beam’ [-Wunused-variable] 308 | PolychromaticBeam &beam = boost::python::extract(obj)(); | ^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment.cc:17: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/virtual_panel.h:28, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel_data.h:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:23: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment.h:23: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:24: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment.h:25: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:19: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment.h:19: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc: In function ‘void dxtbx::model::boost_python::detector_detail::node_from_dict(boost::python::dict, dxtbx::model::Detector::Node*, boost::python::list, scitbx::af::ref)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:89:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 89 | DXTBX_ASSERT(used.size() == boost::python::len(panels)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:89:9: note: in expansion of macro ‘DXTBX_ASSERT’ 89 | DXTBX_ASSERT(used.size() == boost::python::len(panels)); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:90:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 90 | DXTBX_ASSERT(idx < boost::python::len(panels)); | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:90:9: note: in expansion of macro ‘DXTBX_ASSERT’ 90 | DXTBX_ASSERT(idx < boost::python::len(panels)); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:101:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 101 | for (std::size_t i = 0; i < boost::python::len(obj["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc: In function ‘dxtbx::model::Detector* dxtbx::model::boost_python::detector_detail::detector_from_dict(dxtbx::model::Detector*, boost::python::dict)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:125:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 125 | for (std::size_t i = 0; i < boost::python::len(hierarchy["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:135:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 135 | for (std::size_t i = 0; i < boost::python::len(panels); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc: In function ‘dxtbx::model::Detector* dxtbx::model::boost_python::detector_detail::detector_from_dict(dxtbx::model::Detector*, boost::python::dict, const dxtbx::format::Image&, const dxtbx::format::Image&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:159:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 159 | for (std::size_t i = 0; i < boost::python::len(hierarchy["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:169:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 169 | for (std::size_t i = 0; i < boost::python::len(panels); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc: In static member function ‘static void dxtbx::model::boost_python::detector_detail::DetectorPickleSuite::copy_node(dxtbx::model::Detector::Node::pointer, boost::python::dict, boost::python::list)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/detector.cc:229:35: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 229 | for (std::size_t i = 0; i < boost::python::len(node["children"]); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/experiment_list.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/goniometer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/history.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/history.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment_list.h:23, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:20: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment.h:23: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment.h:25: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/kappa_goniometer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/kappa_goniometer.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/experiment_list.h:20: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:20: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/goniometer.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:17: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘dxtbx::model::ExperimentList* dxtbx::model::boost_python::make_experiment_list(boost::python::api::object)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:30:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 30 | for (std::size_t i = 0; i < boost::python::len(items); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘void dxtbx::model::boost_python::experiment_list_setitem(dxtbx::model::ExperimentList&, int, dxtbx::model::Experiment)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:174:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 174 | if (n >= self.size() || n < 0) { | ~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘dxtbx::model::Experiment& dxtbx::model::boost_python::experiment_list_getitem(dxtbx::model::ExperimentList&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:184:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | if (n >= self.size() || n < 0) { | ~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘dxtbx::model::ExperimentList dxtbx::model::boost_python::experiment_list_getitem_slice(const dxtbx::model::ExperimentList&, boost::python::slice)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:193:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 193 | for (std::size_t i = as.start; i < as.stop && i < self.size(); i += as.step) { | ~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc: In function ‘void dxtbx::model::boost_python::experiment_list_delitem(dxtbx::model::ExperimentList&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/experiment_list.cc:203:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 203 | if (n >= self.size() || n < 0) { | ~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc: In function ‘void dxtbx::model::boost_python::goniometer_detail::Goniometer_set_S_at_scan_points_from_tuple(dxtbx::model::Goniometer&, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:79:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 79 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc: In function ‘void dxtbx::model::boost_python::goniometer_detail::Goniometer_set_S_at_scan_points_from_list(dxtbx::model::Goniometer&, boost::python::list)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/goniometer.cc:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 89 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/model_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/model_ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/panel.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/panel.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/parallax_correction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/parallax_correction.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/goniometer.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc:16: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/virtual_panel.h:28, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel_data.h:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/panel.cc:21: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc: In function ‘T* dxtbx::model::boost_python::from_dict(boost::python::dict) [with T = dxtbx::model::MultiAxisGoniometer]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.cc:105:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 105 | for (std::size_t i = 0; i < boost::python::len(l); ++i) { | ~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/panel.cc:22: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/panel.cc:19: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/scan.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/virtual_panel.h:28, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel_data.h:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.cc:14: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/scan_helpers.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan_helpers.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:19: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ g++ -o dxtbx/src/dxtbx/model/boost_python/spectrum.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -isystem/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DBUILD_CBF -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/cbflib -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cbflib_adaptbx -I/usr/include/python3.14 -I/usr/include/hdf5/serial /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/spectrum.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec2.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:17: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:20: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan_helpers.cc:16: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc: In static member function ‘static void dxtbx::model::boost_python::ScanPickleSuite::setstate(dxtbx::model::Scan&, boost::python::tuple)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:162:41: warning: comparison of integer expressions of different signedness: ‘boost::python::ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 162 | DXTBX_ASSERT(len(properties_dict) == ncols); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:162:7: note: in expansion of macro ‘DXTBX_ASSERT’ 162 | DXTBX_ASSERT(len(properties_dict) == ncols); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc: In function ‘boost::python::dict dxtbx::model::boost_python::MaptoPythonDict(dxtbx::model::ExpImgRangeMap)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:187:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 187 | for (int k = 0; k < val.size(); ++k) { | ~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc: In function ‘boost::python::list dxtbx::model::boost_python::get_valid_image_ranges(dxtbx::model::Scan&, std::string)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:374:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 374 | for (int k = 0; k < ranges.size(); ++k) { | ~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:24: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘T* dxtbx::af::flex_table_suite::make_flex_table(boost::python::list) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1233:42: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:416:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 416 | for (std::size_t i = 0; i < len(columns); ++i) { | ~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘void dxtbx::af::flex_table_suite::setitem_row(T&, typename T::size_type, boost::python::dict) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; typename T::size_type = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1252:13: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1232 | flex_table_class.def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1234 | .def("types", &types) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1235 | .def("has_key", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 | .def("clear", &flex_table_type::clear) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 | .def("empty", &flex_table_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1238 | .def("resize", &flex_table_type::resize) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1239 | .def("append", &append) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 | .def("insert", &insert) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 | .def("extend", &extend) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1242 | .def("update", &update) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 | .def("nrows", &flex_table_type::nrows) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1244 | .def("ncols", &flex_table_type::ncols) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 | .def("is_consistent", &flex_table_type::is_consistent) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 | .def("size", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 | .def("__len__", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 | .def("__contains__", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 | .def("__getitem__", &getitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1250 | .def("__getitem__", &getitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 | .def("__getitem__", &getitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1252 | .def("__setitem__", &setitem_row) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:525:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 525 | for (std::size_t i = 0; i < len(row); ++i) { | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘T dxtbx::af::flex_table_suite::select_cols_tuple(const T&, boost::python::tuple) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1265:13: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1232 | flex_table_class.def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1234 | .def("types", &types) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1235 | .def("has_key", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 | .def("clear", &flex_table_type::clear) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 | .def("empty", &flex_table_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1238 | .def("resize", &flex_table_type::resize) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1239 | .def("append", &append) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 | .def("insert", &insert) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 | .def("extend", &extend) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1242 | .def("update", &update) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 | .def("nrows", &flex_table_type::nrows) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1244 | .def("ncols", &flex_table_type::ncols) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 | .def("is_consistent", &flex_table_type::is_consistent) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 | .def("size", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 | .def("__len__", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 | .def("__contains__", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 | .def("__getitem__", &getitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1250 | .def("__getitem__", &getitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 | .def("__getitem__", &getitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1252 | .def("__setitem__", &setitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1253 | .def("__setitem__", &setitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1254 | .def("__delitem__", &delitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1255 | .def("__delitem__", &delitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1256 | .def("__delitem__", &delitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1257 | .def("__iter__", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1258 | .def("cols", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 | .def("items", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 | .def("rows", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 | .def("keys", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1262 | .def("select", &select_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1263 | .def("select", &select_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1264 | .def("select", &select_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1265 | .def("select", &select_cols_tuple) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:747:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 747 | for (std::size_t i = 0; i < len(keys); ++i) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘void dxtbx::af::flex_table_suite::set_selected_cols_tuple(T&, boost::python::tuple, const T&) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1269:13: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1232 | flex_table_class.def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1234 | .def("types", &types) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1235 | .def("has_key", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 | .def("clear", &flex_table_type::clear) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 | .def("empty", &flex_table_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1238 | .def("resize", &flex_table_type::resize) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1239 | .def("append", &append) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 | .def("insert", &insert) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 | .def("extend", &extend) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1242 | .def("update", &update) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 | .def("nrows", &flex_table_type::nrows) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1244 | .def("ncols", &flex_table_type::ncols) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 | .def("is_consistent", &flex_table_type::is_consistent) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 | .def("size", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 | .def("__len__", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 | .def("__contains__", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 | .def("__getitem__", &getitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1250 | .def("__getitem__", &getitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 | .def("__getitem__", &getitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1252 | .def("__setitem__", &setitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1253 | .def("__setitem__", &setitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1254 | .def("__delitem__", &delitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1255 | .def("__delitem__", &delitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1256 | .def("__delitem__", &delitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1257 | .def("__iter__", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1258 | .def("cols", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 | .def("items", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 | .def("rows", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 | .def("keys", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1262 | .def("select", &select_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1263 | .def("select", &select_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1264 | .def("select", &select_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1265 | .def("select", &select_cols_tuple) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1266 | .def("set_selected", &set_selected_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1267 | .def("set_selected", &set_selected_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1268 | .def("set_selected", &set_selected_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1269 | .def("set_selected", &set_selected_cols_tuple) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:838:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 838 | for (std::size_t i = 0; i < len(keys); ++i) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In instantiation of ‘void dxtbx::af::flex_table_suite::del_selected_cols_tuple(T&, boost::python::tuple) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:1273:13: required from ‘static dxtbx::af::flex_table_suite::flex_table_wrapper::class_type dxtbx::af::flex_table_suite::flex_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 1232 | flex_table_class.def(init()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 | .def("__init__", make_constructor(&make_flex_table)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1234 | .def("types", &types) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1235 | .def("has_key", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 | .def("clear", &flex_table_type::clear) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 | .def("empty", &flex_table_type::empty) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1238 | .def("resize", &flex_table_type::resize) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1239 | .def("append", &append) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1240 | .def("insert", &insert) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1241 | .def("extend", &extend) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1242 | .def("update", &update) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 | .def("nrows", &flex_table_type::nrows) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1244 | .def("ncols", &flex_table_type::ncols) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 | .def("is_consistent", &flex_table_type::is_consistent) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1246 | .def("size", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 | .def("__len__", &flex_table_type::size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 | .def("__contains__", &has_key) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1249 | .def("__getitem__", &getitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1250 | .def("__getitem__", &getitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1251 | .def("__getitem__", &getitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1252 | .def("__setitem__", &setitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1253 | .def("__setitem__", &setitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1254 | .def("__delitem__", &delitem_column) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1255 | .def("__delitem__", &delitem_row) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1256 | .def("__delitem__", &delitem_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1257 | .def("__iter__", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1258 | .def("cols", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 | .def("items", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 | .def("rows", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1261 | .def("keys", make_iterator >::range()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1262 | .def("select", &select_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1263 | .def("select", &select_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1264 | .def("select", &select_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1265 | .def("select", &select_cols_tuple) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1266 | .def("set_selected", &set_selected_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1267 | .def("set_selected", &set_selected_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1268 | .def("set_selected", &set_selected_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1269 | .def("set_selected", &set_selected_cols_tuple) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1270 | .def("del_selected", &del_selected_rows_index) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1271 | .def("del_selected", &del_selected_rows_flags) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1272 | .def("del_selected", &del_selected_cols_keys) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1273 | .def("del_selected", &del_selected_cols_tuple) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:177:29: required from ‘static dxtbx::model::boost_python::scan_property_table_wrapper::class_type dxtbx::model::boost_python::scan_property_table_wrapper::wrap(const char*) [with T = dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >; class_type = boost::python::class_, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 177 | return base_type::wrap(name); | ~~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:584:72: required from here 584 | scan_property_table_wrapper >::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 585 | "scan_property_table"); | ~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:890:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 890 | for (std::size_t i = 0; i < len(keys); ++i) { | ~~^~~~~~~~~~~ g++ -o lib/libcbf-private.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libcbf-private.so.0 cbflib_adaptbx/detectors/mar_adaptor.o cbflib_adaptbx/detectors/cbf_adaptor.o cbflib_adaptbx/detectors/cbf_byte_offset_optimized.o cbflib_adaptbx/detectors/buffer_based_service.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lhdf5_serial -lcbf Create symlinks for: 'lib/libcbf-private.so.0.0.1' 'lib/libcbf-private.so.0'->'lib/libcbf-private.so.0.0.1' 'lib/libcbf-private.so'->'lib/libcbf-private.so.0.0.1' g++ -o exe_dev/cbflib.tst_memory -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cbflib_adaptbx/detectors/tst_memory.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcbf -lcbf-private -lm -lhdf5_serial g++ -o exe_dev/cctbx.convert_ccp4_symop_lib -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/examples/convert_ccp4_symop_lib.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o exe_dev/cctbx.find_distances -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/examples/find_distances.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o exe_dev/cctbx.getting_started -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/examples/getting_started.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o exe_dev/cctbx.lattice_symmetry -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/examples/lattice_symmetry.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o exe_dev/cctbx.sym_equiv_sites -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/examples/sym_equiv_sites.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o exe_dev/cctbx.sys_abs_equiv_space_groups -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread cctbx/examples/sys_abs_equiv_space_groups.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lboost_thread -lm g++ -o fable/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/spectrum.cc:10: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/to_from_dict.h:20: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h: In function ‘scitbx::af::shared dxtbx::model::get_mod2pi_angles_in_range(scitbx::vec2, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan_helpers.h:89:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 89 | for (std::size_t i = 0; i < n_angles; ++i) { | ~~^~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/spectrum.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/spectrum.cc:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In constructor ‘dxtbx::model::Scan::Scan(scitbx::vec2, dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:44: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:148:7: note: in expansion of macro ‘DXTBX_ASSERT’ 148 | DXTBX_ASSERT(properties_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_properties(dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:37: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:242:7: note: in expansion of macro ‘DXTBX_ASSERT’ 242 | DXTBX_ASSERT(new_table.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_oscillation(scitbx::vec2)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:397:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 397 | for (std::size_t i = 0; i < num_images_; ++i) { | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_exposure_times(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:42: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:411:7: note: in expansion of macro ‘DXTBX_ASSERT’ 411 | DXTBX_ASSERT(exposure_times.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::set_epochs(const scitbx::af::shared&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:417:7: note: in expansion of macro ‘DXTBX_ASSERT’ 417 | DXTBX_ASSERT(epochs.size() == num_images_); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h: In member function ‘void dxtbx::model::Scan::append(const dxtbx::model::Scan&, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:39: warning: comparison of integer expressions of different signedness: ‘dxtbx::af::flex_table, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:556:7: note: in expansion of macro ‘DXTBX_ASSERT’ 556 | DXTBX_ASSERT(properties_.size() == num_images_); | ^~~~~~~~~~~~ g++ -o gltbx/font_ucs_10x20.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/font_ucs_10x20.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/font_ucs_8x13.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/font_ucs_8x13.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/font_ucs_9x15.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/font_ucs_9x15.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/fonts_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx/fonts_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/ext.cpp:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/ext.cpp:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string.hpp:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/str_ref.hpp:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/format.hpp:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/ext.cpp:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/ext.cpp: In function ‘unsigned int fable::ext::get_code_stop(const boost::python::api::object&, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/ext.cpp:24:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 24 | TBXX_ASSERT(stop <= len_code); | ~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/tbxx/error_utils.hpp:59:9: note: in definition of macro ‘TBXX_ASSERT’ 59 | if (!(condition)) { \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/ext.cpp: In function ‘int fable::ext::floating_point_scan_after_dot(const boost::python::api::object&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/ext.cpp:71:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 71 | if (i < code_stop) { | ~~^~~~~~~~~~~ g++ -o gltbx/gl_defines_00_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_00_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_01_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_01_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_02_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_02_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_03_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_03_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_04_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_04_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_05_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_05_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_06_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_06_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_defines_07_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_defines_07_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx/gl_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_00_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_00_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_01_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_01_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_02_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_02_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_03_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_03_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_04_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_04_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_05_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_05_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_06_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_06_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_07_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_07_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_08_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_08_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_09_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_09_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_10_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_10_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:23: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table.h: In member function ‘void dxtbx::af::flex_table::insert_visitor::operator()(T&) const [with T = scitbx::af::shared >; VarientType = boost::variant, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table.h:218:17: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 218 | v.insert(v.begin() + pos, n, typename T::value_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/scan.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:124:12: note: by argument 4 of type ‘const scitbx::vec2&’ to ‘void scitbx::af::shared_plain::insert(ElementType*, const size_type&, const ElementType&) [with ElementType = scitbx::vec2]’ declared here 124 | void insert(ElementType* pos, size_type const& n, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table.h:218:50: note: ‘’ declared here 218 | v.insert(v.begin() + pos, n, typename T::value_type()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table.h: In member function ‘void dxtbx::af::flex_table::insert_visitor::operator()(T&) const [with T = scitbx::af::shared >; VarientType = boost::variant, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_item, scitbx::af::shared >, boost::mpl::l_end> > > > > > > >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table.h:218:17: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 218 | v.insert(v.begin() + pos, n, typename T::value_type()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:124:12: note: by argument 4 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::insert(ElementType*, const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 124 | void insert(ElementType* pos, size_type const& n, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table.h:218:50: note: ‘’ declared here 218 | v.insert(v.begin() + pos, n, typename T::value_type()); | ^~~~~~~~~~~~ g++ -o gltbx/gl_functions_11_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_11_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In function ‘void dxtbx::af::flex_table_suite::type_appender::operator()(U) [with U = scitbx::af::shared >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:905:54: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 905 | type_list.append(object(handle<>(PyObject_Type(object(a).ptr())))); | ^~~~~~~~~ In file included from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/boost_python/scan.cc:11: /usr/include/boost/python/object_core.hpp:246:16: note: by argument 2 of type ‘const scitbx::vec2&’ to ‘boost::python::api::object::object(const T&) [with T = scitbx::vec2]’ declared here 246 | explicit object(T const& x) | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:904:30: note: ‘a’ declared here 904 | typename U::value_type a = typename U::value_type(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h: In function ‘void dxtbx::af::flex_table_suite::type_appender::operator()(U) [with U = scitbx::af::shared >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:905:54: warning: ‘a’ may be used uninitialized [-Wmaybe-uninitialized] 905 | type_list.append(object(handle<>(PyObject_Type(object(a).ptr())))); | ^~~~~~~~~ /usr/include/boost/python/object_core.hpp:246:16: note: by argument 2 of type ‘const scitbx::vec3&’ to ‘boost::python::api::object::object(const T&) [with T = scitbx::vec3]’ declared here 246 | explicit object(T const& x) | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/array_family/flex_table_suite.h:904:30: note: ‘a’ declared here 904 | typename U::value_type a = typename U::value_type(); | ^ g++ -o gltbx/gl_functions_12_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_12_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_13_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_13_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_14_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_14_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/gl_functions_15_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/gl_functions_15_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_defines_00_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/glu_defines_00_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_defines_01_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/glu_defines_01_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx/glu_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_functions_00_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/glu_functions_00_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_functions_01_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/glu_functions_01_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_functions_02_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/glu_functions_02_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/glu_functions_03_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 gltbx/glu_functions_03_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/quadrics_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx/quadrics_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/util_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx/util_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o gltbx/viewer_utils_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/gltbx/viewer_utils_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/ccp4_map/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/cif/boost_python/cif_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/cif/boost_python/cif_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/detectors/bruker.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/detectors/bruker.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp: In function ‘void iotbx::ccp4_map::write_ccp4_map_set_grid(const std::string&, const cctbx::uctbx::unit_cell&, const cctbx::sgtbx::space_group&, const scitbx::af::int3&, const scitbx::af::const_ref >&, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:178:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 178 | for (int i = 0; i < labels.size(); i++) { | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:213:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 213 | for (int i = 0; i < data_ref.accessor()[0]; i++) { /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:215:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 215 | for (int j = 0; j < data_ref.accessor()[1]; j++) { /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:216:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 216 | for (int k = 0; k < data_ref.accessor()[2]; k++) { /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp: In function ‘void iotbx::ccp4_map::write_ccp4_map_box(const std::string&, const cctbx::uctbx::unit_cell&, const cctbx::sgtbx::space_group&, const scitbx::af::const_ref >&, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:245:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 245 | for (int i = 0; i < labels.size(); i++) { | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:278:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 278 | for (int i = 0; i < data_ref.accessor()[0]; i++) { /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:280:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 280 | for (int j = 0; j < data_ref.accessor()[1]; j++) { /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:281:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 281 | for (int k = 0; k < data_ref.accessor()[2]; k++) { /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp: In function ‘void iotbx::ccp4_map::write_ccp4_map_p1_cell(const std::string&, const cctbx::uctbx::unit_cell&, const cctbx::sgtbx::space_group&, const scitbx::af::int3&, const scitbx::af::int3&, const scitbx::af::const_ref >&, const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/ccp4_map/ext.cpp:311:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 311 | for (int i = 0; i < labels.size(); i++) { | ~~^~~~~~~~~~~~~~~ g++ -o iotbx/detectors/bruker_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/detectors/bruker_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/detectors/detectors_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/detectors/detectors_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/detectors/image_divider.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/detectors/image_divider.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/dsn6/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/dsn6/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/misc/boost_python/dtrek_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/misc/boost_python/dtrek_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/misc/boost_python/scalepack_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/misc/boost_python/scalepack_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/batch_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/batch_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/column.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/column_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/crystal.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/crystal_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column.cpp: In member function ‘void iotbx::mtz::column::set_reals(const scitbx::af::const_ref&, const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column.cpp:253:48: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 253 | IOTBX_ASSERT(mtz_reflection_indices.size() <= nref_at_entry); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column.cpp:253:5: note: in expansion of macro ‘IOTBX_ASSERT’ 253 | IOTBX_ASSERT(mtz_reflection_indices.size() <= nref_at_entry); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/batch.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/batch_bpl.cpp:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/hendrickson_lattman.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:13: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::batch; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/batch_bpl.cpp:78:60: required from here 78 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 79 | "shared_batch"); | ~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ g++ -o iotbx/mtz/dataset.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/dataset_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column_bpl.cpp:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ g++ -o iotbx/mtz/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/mtz/object.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/hendrickson_lattman.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:13: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::column; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/column_bpl.cpp:76:60: required from here 76 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 77 | "shared_column"); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o iotbx/mtz/object_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal_bpl.cpp:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/batch.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/hendrickson_lattman.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:13: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::crystal; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal_bpl.cpp:42:60: required from here 42 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 43 | "shared_crystal"); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/hendrickson_lattman.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/sym_equiv.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/miller/asu.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.cpp:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.cpp: In member function ‘void iotbx::mtz::object::replace_miller_indices(const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.cpp:433:40: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 433 | IOTBX_ASSERT(miller_indices.size() == n_reflections()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.cpp:433:5: note: in expansion of macro ‘IOTBX_ASSERT’ 433 | IOTBX_ASSERT(miller_indices.size() == n_reflections()); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.cpp:435:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 435 | for(int i_refl=0;i_refl iotbx::mtz::object::extract_integers(const scitbx::af::const_ref&, const char*) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.cpp:624:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 624 | for(int i=0;i iotbx::mtz::object::extract_reals(const scitbx::af::const_ref&, const char*) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.cpp:684:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 684 | for(int i=0;i&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/hendrickson_lattman.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:13: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::mtz::dataset; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset_bpl.cpp:43:60: required from here 43 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 44 | "shared_dataset"); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rot_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/rt_mx.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/change_of_basis_op.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tr_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/space_group.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/crystal.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/dataset.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/batch.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object_bpl.cpp:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h: In member function ‘void iotbx::mtz::object::delete_reflections(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:30: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 591 | IOTBX_ASSERT(iref[0] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:591:9: note: in expansion of macro ‘IOTBX_ASSERT’ 591 | IOTBX_ASSERT(iref[0] < oldsize); | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:32: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare] 594 | IOTBX_ASSERT(iref[i] < oldsize); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/mtz/object.h:594:11: note: in expansion of macro ‘IOTBX_ASSERT’ 594 | IOTBX_ASSERT(iref[i] < oldsize); | ^~~~~~~~~~~~ g++ -o iotbx/pdb/common_residue_names_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/common_residue_names_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/construct_hierarchy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/construct_hierarchy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/construct_hierarchy.cpp: In member function ‘iotbx::pdb::hierarchy::root iotbx::pdb::input::construct_hierarchy(bool, bool, bool)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/construct_hierarchy.cpp:97:20: warning: variable ‘i_chain’ set but not used [-Wunused-but-set-variable=] 97 | for(unsigned i_chain=0;ch_r.next();i_chain++) { | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/construct_hierarchy.cpp: In member function ‘void iotbx::pdb::input_atoms_with_labels_generator::run(const iotbx::pdb::input&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/construct_hierarchy.cpp:222:20: warning: variable ‘i_chain’ set but not used [-Wunused-but-set-variable=] 222 | for(unsigned i_chain=0;ch_r.next();i_chain++) { | ^~~~~~~ g++ -o iotbx/pdb/hierarchy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy_atom_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atom_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy_atoms.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy.cpp: In member function ‘bool iotbx::pdb::hierarchy::chain::is_polymer_chain() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy.cpp:1795:26: warning: variable ‘n_water’ set but not used [-Wunused-but-set-variable=] 1795 | int n_polymer_res=0, n_water=0, n_unk = 0, n_non_polymer=0; | ^~~~~~~ g++ -o iotbx/pdb/hierarchy_atoms_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:167:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/16/memory:80, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/misc.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/namespace.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:4: /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:173:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 173 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp:244:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 244 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp: In function ‘std::auto_ptr iotbx::pdb::hierarchy::atoms::reset_tmp(const scitbx::af::const_ref&, int, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp:250:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 250 | std::auto_ptr result(new atom_tmp_sentinel(atoms)); | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp: At global scope: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp:259:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 259 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp: In function ‘std::auto_ptr iotbx::pdb::hierarchy::atoms::reset_tmp_for_occupancy_groups_simple(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.cpp:263:10: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 263 | std::auto_ptr result(new atom_tmp_sentinel(atoms)); | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ g++ -o iotbx/pdb/hierarchy_select.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_select.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hierarchy_write.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_write.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:2: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/16/memory:80, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/misc.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer_flags.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:4: /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:173:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 173 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_ext.cpp:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:167:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/16/memory:80, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_ext.cpp:4: /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:173:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 173 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp: In function ‘void iotbx::pdb::hierarchy::atoms::bpl_wrap()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:84:17: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 84 | std::auto_ptr, | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_write.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:167:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | std::auto_ptr | ^~~~~~~~ In file included from /usr/include/c++/16/memory:80, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/misc.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/namespace.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:4: /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms.h:173:8: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 173 | std::auto_ptr | ^~~~~~~~ /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ g++ -o iotbx/pdb/hybrid_36_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hybrid_36_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/c++/16/cassert:46, from /usr/include/boost/function/function_template.hpp:20, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/converter/arg_to_python_base.hpp:7, from /usr/include/boost/python/converter/arg_to_python.hpp:14, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::pdb::hierarchy::atom; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:87:36: required from here 87 | class_ wa = wat::wrap("af_shared_atom"); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = iotbx::pdb::hierarchy::atom_with_labels; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hierarchy_atoms_bpl.cpp:91:44: required from here 91 | class_ wawl = wawl_t::wrap("af_shared_atom_with_labels"); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ gcc -o iotbx/pdb/hybrid_36_c.o -c -std=gnu17 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hybrid_36_c.c g++ -o iotbx/pdb/hybrid_36_cpp.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/hybrid_36_cpp.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hybrid_36_fem.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable iotbx/pdb/hybrid_36_fem.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/input.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/input.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/io.hpp:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/close_chain.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem.hpp:10, from iotbx/pdb/hybrid_36_fem.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp: In member function ‘void fem::common::getarg(int, fem::str_ref) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp:40:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/variant.hpp:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:8: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/file_utils.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/input.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h: In function ‘scitbx::af::shared > scitbx::misc::split_lines(const char*, std::size_t, bool, bool)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:24:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 24 | while (i < size) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:25:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 25 | while (i < size && data[i] != '\n' && data[i] != '\r') i++; | ~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:27:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 27 | if (i < size) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:28:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 28 | if (data[i] == '\r' && i+1 < size && data[i+1] == '\n') { | ~~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:46:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | if (j < size) { | ~~^~~~~~ g++ -o iotbx/pdb/input_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/input_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/hybrid_36_fem -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread iotbx/pdb/hybrid_36_fem.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o iotbx/pdb/input_write.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/input_write.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/overall_counts.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/overall_counts.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/rna_dna_atom_names_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/rna_dna_atom_names_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/pdb/write_utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/write_utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/write_utils.cpp: In destructor ‘iotbx::pdb::write_utils::fstream_open_close::~fstream_open_close()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/write_utils.cpp:42:7: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 42 | throw std::runtime_error( | ^~~~~~~~~~~~~~~~~~~~~~~~~ 43 | "Failure writing to file: \"" + file_name + "\""); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/write_utils.cpp:42:7: note: in C++11 destructors default to ‘noexcept’ g++ -o iotbx/pdb/xray_structure_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/xray_structure_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/shelx/shelx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/shelx/shelx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o iotbx/wildcard_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/wildcard_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/xray_structure.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/pdb/xray_structure_bpl.cpp:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ g++ -o lib/libann_adaptor.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libann_adaptor.so.0 annlib_adaptbx/ann/ann_adaptor.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lann-cctbx Create symlinks for: 'lib/libann_adaptor.so.0.0.1' 'lib/libann_adaptor.so.0'->'lib/libann_adaptor.so.0.0.1' 'lib/libann_adaptor.so'->'lib/libann_adaptor.so.0.0.1' g++ -o lib/annlib_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=annlib_ext.so.0 annlib_adaptbx/ann/boost_python/annlib_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lann-cctbx -lann_adaptor -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/annlib_ext.so.0.0.1' 'lib/annlib_ext.so.0'->'lib/annlib_ext.so.0.0.1' 'lib/annlib_ext.so'->'lib/annlib_ext.so.0.0.1' g++ -o lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_boost_thread_test_ext.so.0 boost_adaptbx/tests/boost_thread_test.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1' 'lib/boost_adaptbx_boost_thread_test_ext.so.0'->'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1' 'lib/boost_adaptbx_boost_thread_test_ext.so'->'lib/boost_adaptbx_boost_thread_test_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_breadth_first_search_ext.so.0 boost_adaptbx/graph/breadth_first_search_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1' 'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0'->'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1' 'lib/boost_adaptbx_graph_breadth_first_search_ext.so'->'lib/boost_adaptbx_graph_breadth_first_search_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_clustering_algorithm_ext.so.0 boost_adaptbx/graph/clustering_algorithm_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm g++ -o lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_connected_component_algorithm_ext.so.0 boost_adaptbx/graph/connected_component_algorithm_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm g++ -o lib/boost_adaptbx_graph_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_ext.so.0 boost_adaptbx/graph/graph_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0'->'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_clustering_algorithm_ext.so'->'lib/boost_adaptbx_graph_clustering_algorithm_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_graph_structure_comparison_ext.so.0 boost_adaptbx/graph/graph_structure_comparison_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0'->'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1' 'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so'->'lib/boost_adaptbx_graph_connected_component_algorithm_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_maximum_clique_ext.so.0 boost_adaptbx/graph/maximum_clique_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1' 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0'->'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1' 'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so'->'lib/boost_adaptbx_graph_graph_structure_comparison_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_metric_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_metric_ext.so.0 boost_adaptbx/graph/metric_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_metric_ext.so.0.0.1' 'lib/boost_adaptbx_graph_metric_ext.so.0'->'lib/boost_adaptbx_graph_metric_ext.so.0.0.1' 'lib/boost_adaptbx_graph_metric_ext.so'->'lib/boost_adaptbx_graph_metric_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_min_cut_max_flow_ext.so.0 boost_adaptbx/graph/min_cut_max_flow_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1' 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0'->'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1' 'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so'->'lib/boost_adaptbx_graph_min_cut_max_flow_ext.so.0.0.1' g++ -o lib/boost_adaptbx_graph_utility_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_graph_utility_ext.so.0 boost_adaptbx/graph/utility_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1' 'lib/boost_adaptbx_graph_maximum_clique_ext.so.0'->'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1' 'lib/boost_adaptbx_graph_maximum_clique_ext.so'->'lib/boost_adaptbx_graph_maximum_clique_ext.so.0.0.1' g++ -o lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_adaptbx_python_streambuf_test_ext.so.0 boost_adaptbx/tests/python_streambuf_test_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm -lboost_timer Create symlinks for: 'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1' 'lib/boost_adaptbx_python_streambuf_test_ext.so.0'->'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1' 'lib/boost_adaptbx_python_streambuf_test_ext.so'->'lib/boost_adaptbx_python_streambuf_test_ext.so.0.0.1' g++ -o lib/boost_optional_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_optional_ext.so.0 boost_adaptbx/optional_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm -lboost_timer Create symlinks for: 'lib/boost_optional_ext.so.0.0.1' 'lib/boost_optional_ext.so.0'->'lib/boost_optional_ext.so.0.0.1' 'lib/boost_optional_ext.so'->'lib/boost_optional_ext.so.0.0.1' g++ -o lib/boost_python_hybrid_times_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_python_hybrid_times_ext.so.0 boost_adaptbx/hybrid_times_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_adaptbx_graph_utility_ext.so.0.0.1' 'lib/boost_adaptbx_graph_utility_ext.so.0'->'lib/boost_adaptbx_graph_utility_ext.so.0.0.1' 'lib/boost_adaptbx_graph_utility_ext.so'->'lib/boost_adaptbx_graph_utility_ext.so.0.0.1' g++ -o lib/boost_python_meta_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_python_meta_ext.so.0 boost_adaptbx/meta_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm -lboost_timer Create symlinks for: 'lib/boost_python_hybrid_times_ext.so.0.0.1' 'lib/boost_python_hybrid_times_ext.so.0'->'lib/boost_python_hybrid_times_ext.so.0.0.1' 'lib/boost_python_hybrid_times_ext.so'->'lib/boost_python_hybrid_times_ext.so.0.0.1' g++ -o lib/boost_rational_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_rational_ext.so.0 boost_adaptbx/rational_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/boost_rational_ext.so.0.0.1' 'lib/boost_rational_ext.so.0'->'lib/boost_rational_ext.so.0.0.1' 'lib/boost_rational_ext.so'->'lib/boost_rational_ext.so.0.0.1' g++ -o lib/boost_tuple_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=boost_tuple_ext.so.0 boost_adaptbx/tuple_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm -lboost_timer Create symlinks for: 'lib/boost_python_meta_ext.so.0.0.1' 'lib/boost_python_meta_ext.so.0'->'lib/boost_python_meta_ext.so.0.0.1' 'lib/boost_python_meta_ext.so'->'lib/boost_python_meta_ext.so.0.0.1' g++ -o lib/cbflib_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cbflib_ext.so.0 cbflib_adaptbx/detectors/boost_python/cbflib_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcbf-private -lcbf -lboost_thread -lboost_python314 -lm -lhdf5_serial Create symlinks for: 'lib/boost_tuple_ext.so.0.0.1' 'lib/boost_tuple_ext.so.0'->'lib/boost_tuple_ext.so.0.0.1' 'lib/boost_tuple_ext.so'->'lib/boost_tuple_ext.so.0.0.1' g++ -o scitbx/boost_python/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/cbflib_ext.so.0.0.1' 'lib/cbflib_ext.so.0'->'lib/cbflib_ext.so.0.0.1' 'lib/cbflib_ext.so'->'lib/cbflib_ext.so.0.0.1' g++ -o scitbx/boost_python/slice.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/slice.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/boost_adaptbx_graph_ext.so.0.0.1' 'lib/boost_adaptbx_graph_ext.so.0'->'lib/boost_adaptbx_graph_ext.so.0.0.1' 'lib/boost_adaptbx_graph_ext.so'->'lib/boost_adaptbx_graph_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/cma_es_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cma_es_ext.so.0 cma_es/cma_es_ext.o cma_es/cma/cmaes.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm g++ -o lib/dxtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_ext.so.0 dxtbx/src/dxtbx/boost_python/ext.o dxtbx/src/dxtbx/boost_python/compression.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/usr/lib -lm -ltiff -lboost_python314 -lcbf Create symlinks for: 'lib/cma_es_ext.so.0.0.1' 'lib/cma_es_ext.so.0'->'lib/cma_es_ext.so.0.0.1' 'lib/cma_es_ext.so'->'lib/cma_es_ext.so.0.0.1' g++ -o lib/dxtbx_format_image_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_format_image_ext.so.0 dxtbx/src/dxtbx/format/boost_python/image_ext.o dxtbx/src/dxtbx/format/boost_python/cbf_read_buffer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/usr/lib -lm -ltiff -lboost_python314 -lcbf -lhdf5_serial g++ -o lib/dxtbx_format_nexus_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_format_nexus_ext.so.0 dxtbx/src/dxtbx/format/boost_python/nexus_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/usr/lib -lm -ltiff -lboost_python314 -lcbf -lhdf5_serial Create symlinks for: 'lib/dxtbx_ext.so.0.0.1' 'lib/dxtbx_ext.so.0'->'lib/dxtbx_ext.so.0.0.1' 'lib/dxtbx_ext.so'->'lib/dxtbx_ext.so.0.0.1' g++ -o lib/fable_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=fable_ext.so.0 fable/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/dxtbx_format_nexus_ext.so.0.0.1' 'lib/dxtbx_format_nexus_ext.so.0'->'lib/dxtbx_format_nexus_ext.so.0.0.1' 'lib/dxtbx_format_nexus_ext.so'->'lib/dxtbx_format_nexus_ext.so.0.0.1' g++ -o lib/iotbx_ccp4_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_ccp4_map_ext.so.0 iotbx/ccp4_map/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lccp4c -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/fable_ext.so.0.0.1' 'lib/fable_ext.so.0'->'lib/fable_ext.so.0.0.1' 'lib/fable_ext.so'->'lib/fable_ext.so.0.0.1' g++ -o ucif/cifParser.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ucif/cifParser.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o ucif/cifLexer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/ucif/cifLexer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/iotbx_ccp4_map_ext.so.0.0.1' 'lib/iotbx_ccp4_map_ext.so.0'->'lib/iotbx_ccp4_map_ext.so.0.0.1' 'lib/iotbx_ccp4_map_ext.so'->'lib/iotbx_ccp4_map_ext.so.0.0.1' g++ -o lib/iotbx_detectors_bruker_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_detectors_bruker_ext.so.0 iotbx/detectors/bruker_ext.o iotbx/detectors/bruker.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_detectors_bruker_ext.so.0.0.1' 'lib/iotbx_detectors_bruker_ext.so.0'->'lib/iotbx_detectors_bruker_ext.so.0.0.1' 'lib/iotbx_detectors_bruker_ext.so'->'lib/iotbx_detectors_bruker_ext.so.0.0.1' g++ -o lib/iotbx_detectors_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_detectors_ext.so.0 iotbx/detectors/detectors_ext.o iotbx/detectors/image_divider.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm g++ -o lib/iotbx_dsn6_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_dsn6_map_ext.so.0 iotbx/dsn6/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_dsn6_map_ext.so.0.0.1' 'lib/iotbx_dsn6_map_ext.so.0'->'lib/iotbx_dsn6_map_ext.so.0.0.1' 'lib/iotbx_dsn6_map_ext.so'->'lib/iotbx_dsn6_map_ext.so.0.0.1' g++ -o lib/iotbx_dtrek_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_dtrek_ext.so.0 iotbx/misc/boost_python/dtrek_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_dtrek_ext.so.0.0.1' 'lib/iotbx_dtrek_ext.so.0'->'lib/iotbx_dtrek_ext.so.0.0.1' 'lib/iotbx_dtrek_ext.so'->'lib/iotbx_dtrek_ext.so.0.0.1' g++ -o lib/libccp4io.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libccp4io.so.0 ccp4io_adaptbx/fortran_call_stubs.o ccp4io_adaptbx/printf_wrappers.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lm -lccp4c Create symlinks for: 'lib/libccp4io.so.0.0.1' 'lib/libccp4io.so.0'->'lib/libccp4io.so.0.0.1' 'lib/libccp4io.so'->'lib/libccp4io.so.0.0.1' g++ -o lib/libiotbx_mtz.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libiotbx_mtz.so.0 iotbx/mtz/object.o iotbx/mtz/crystal.o iotbx/mtz/dataset.o iotbx/mtz/column.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lccp4io -lccp4c -lm -lboost_thread g++ -o lib/libscitbx_boost_python.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -shared -rdynamic -std=c++14 -Wl,-soname=libscitbx_boost_python.so.0 scitbx/boost_python/utils.o scitbx/boost_python/slice.o scitbx/array_family/boost_python/utils.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 Create symlinks for: 'lib/libscitbx_boost_python.so.0.0.1' 'lib/libscitbx_boost_python.so.0'->'lib/libscitbx_boost_python.so.0.0.1' 'lib/libscitbx_boost_python.so'->'lib/libscitbx_boost_python.so.0.0.1' g++ -o lib/cctbx_translation_search_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_translation_search_ext.so.0 cctbx/translation_search/boost_python/translation_search_ext.o cctbx/translation_search/boost_python/fast_nv1995.o cctbx/translation_search/boost_python/fast_terms.o cctbx/translation_search/boost_python/symmetry_flags.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/libiotbx_mtz.so.0.0.1' 'lib/libiotbx_mtz.so.0'->'lib/libiotbx_mtz.so.0.0.1' 'lib/libiotbx_mtz.so'->'lib/libiotbx_mtz.so.0.0.1' g++ -o lib/iotbx_mtz_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_mtz_ext.so.0 iotbx/mtz/ext.o iotbx/mtz/object_bpl.o iotbx/mtz/crystal_bpl.o iotbx/mtz/dataset_bpl.o iotbx/mtz/column_bpl.o iotbx/mtz/batch_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -liotbx_mtz -lcctbx -lccp4io -lccp4c -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/dxtbx_format_image_ext.so.0.0.1' 'lib/dxtbx_format_image_ext.so.0'->'lib/dxtbx_format_image_ext.so.0.0.1' 'lib/dxtbx_format_image_ext.so'->'lib/dxtbx_format_image_ext.so.0.0.1' g++ -o lib/cctbx_sgtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_sgtbx_ext.so.0 cctbx/sgtbx/boost_python/sgtbx_ext.o cctbx/sgtbx/boost_python/brick.o cctbx/sgtbx/boost_python/change_of_basis.o cctbx/sgtbx/boost_python/find_affine.o cctbx/sgtbx/boost_python/lattice_symmetry.o cctbx/sgtbx/boost_python/phase_info.o cctbx/sgtbx/boost_python/reciprocal_space_asu.o cctbx/sgtbx/boost_python/rot_mx.o cctbx/sgtbx/boost_python/rt_mx.o cctbx/sgtbx/boost_python/search_symmetry.o cctbx/sgtbx/boost_python/seminvariant.o cctbx/sgtbx/boost_python/site_symmetry.o cctbx/sgtbx/boost_python/space_group.o cctbx/sgtbx/boost_python/space_group_type.o cctbx/sgtbx/boost_python/sym_equiv_sites.o cctbx/sgtbx/boost_python/symbols.o cctbx/sgtbx/boost_python/tensor_rank_2.o cctbx/sgtbx/boost_python/tensors.o cctbx/sgtbx/boost_python/tr_vec.o cctbx/sgtbx/boost_python/wyckoff.o cctbx/sgtbx/boost_python/select_generators.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_translation_search_ext.so.0.0.1' 'lib/cctbx_translation_search_ext.so.0'->'lib/cctbx_translation_search_ext.so.0.0.1' 'lib/cctbx_translation_search_ext.so'->'lib/cctbx_translation_search_ext.so.0.0.1' g++ -o lib/dxtbx_masking_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_masking_ext.so.0 dxtbx/src/dxtbx/masking/boost_python/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/usr/lib -lboost_thread -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python314 -lcbf -lhdf5_serial Create symlinks for: 'lib/iotbx_detectors_ext.so.0.0.1' 'lib/iotbx_detectors_ext.so.0'->'lib/iotbx_detectors_ext.so.0.0.1' 'lib/iotbx_detectors_ext.so'->'lib/iotbx_detectors_ext.so.0.0.1' g++ -o lib/cctbx_statistics_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_statistics_ext.so.0 cctbx/boost_python/statistics_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/cctbx_adptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_adptbx_ext.so.0 cctbx/adptbx/boost_python/adptbx_ext.o cctbx/adptbx/boost_python/hirshfeld.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_statistics_ext.so.0.0.1' 'lib/cctbx_statistics_ext.so.0'->'lib/cctbx_statistics_ext.so.0.0.1' 'lib/cctbx_statistics_ext.so'->'lib/cctbx_statistics_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_henke_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_henke_ext.so.0 cctbx/eltbx/boost_python/henke_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_henke_ext.so.0.0.1' 'lib/cctbx_eltbx_henke_ext.so.0'->'lib/cctbx_eltbx_henke_ext.so.0.0.1' 'lib/cctbx_eltbx_henke_ext.so'->'lib/cctbx_eltbx_henke_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_sasaki_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_sasaki_ext.so.0 cctbx/eltbx/boost_python/sasaki_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/iotbx_cif_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_cif_ext.so.0 iotbx/cif/boost_python/cif_ext.o ucif/cifParser.o ucif/cifLexer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm -lantlr3c Create symlinks for: 'lib/cctbx_eltbx_sasaki_ext.so.0.0.1' 'lib/cctbx_eltbx_sasaki_ext.so.0'->'lib/cctbx_eltbx_sasaki_ext.so.0.0.1' 'lib/cctbx_eltbx_sasaki_ext.so'->'lib/cctbx_eltbx_sasaki_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_wavelengths_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_wavelengths_ext.so.0 cctbx/eltbx/boost_python/wavelengths_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/cctbx_xray_observations_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_xray_observations_ext.so.0 cctbx/xray/observations/boost_python/observations.o cctbx/xray/observations/boost_python/observations_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_cif_ext.so.0.0.1' 'lib/iotbx_cif_ext.so.0'->'lib/iotbx_cif_ext.so.0.0.1' 'lib/iotbx_cif_ext.so'->'lib/iotbx_cif_ext.so.0.0.1' g++ -o lib/cctbx_xray_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_xray_ext.so.0 cctbx/xray/boost_python/xray_ext.o cctbx/xray/boost_python/conversions.o cctbx/xray/boost_python/gradient_flags.o cctbx/xray/boost_python/gradients_direct.o cctbx/xray/boost_python/each_hkl_gradients_direct.o cctbx/xray/boost_python/fast_gradients.o cctbx/xray/boost_python/minimization.o cctbx/xray/boost_python/scatterer_flags.o cctbx/xray/boost_python/scatterer.o cctbx/xray/boost_python/scattering_type_registry.o cctbx/xray/boost_python/sampling_base.o cctbx/xray/boost_python/sampled_model_density.o cctbx/xray/boost_python/structure_factors_direct.o cctbx/xray/boost_python/structure_factors_simple.o cctbx/xray/boost_python/curvatures_simple.o cctbx/xray/boost_python/targets.o cctbx/xray/boost_python/f_model_bpl.o cctbx/xray/boost_python/twin_targets.o cctbx/xray/boost_python/grouped_data.o cctbx/xray/boost_python/parameter_map.o cctbx/xray/boost_python/twin_components.o cctbx/xray/boost_python/extinction.o cctbx/xray/boost_python/sigmaa.o cctbx/xray/targets/shelxl_wght_ls_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1' 'lib/cctbx_eltbx_wavelengths_ext.so.0'->'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1' 'lib/cctbx_eltbx_wavelengths_ext.so'->'lib/cctbx_eltbx_wavelengths_ext.so.0.0.1' g++ -o lib/cctbx_crystal_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_crystal_ext.so.0 cctbx/crystal/crystal_ext.o cctbx/crystal/asu_clusters_bpl.o cctbx/crystal/close_packing_bpl.o cctbx/crystal/coordination_sequences_bpl.o cctbx/crystal/direct_space_asu_bpl.o cctbx/crystal/incremental_pairs_bpl.o cctbx/crystal/neighbors_bpl.o cctbx/crystal/pair_tables_bpl.o cctbx/crystal/site_cluster_analysis_bpl.o cctbx/crystal/symmetry_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_adptbx_ext.so.0.0.1' 'lib/cctbx_adptbx_ext.so.0'->'lib/cctbx_adptbx_ext.so.0.0.1' 'lib/cctbx_adptbx_ext.so'->'lib/cctbx_adptbx_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_covalent_radii_ext.so.0 cctbx/eltbx/boost_python/covalent_radii_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_covalent_radii_ext.so.0'->'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_covalent_radii_ext.so'->'lib/cctbx_eltbx_covalent_radii_ext.so.0.0.1' g++ -o lib/gltbx_glu_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_glu_ext.so.0 gltbx/glu_ext.o gltbx/glu_defines_00_bpl.o gltbx/glu_defines_01_bpl.o gltbx/glu_functions_00_bpl.o gltbx/glu_functions_01_bpl.o gltbx/glu_functions_02_bpl.o gltbx/glu_functions_03_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lGLU -lGL -lm Create symlinks for: 'lib/cctbx_xray_observations_ext.so.0.0.1' 'lib/cctbx_xray_observations_ext.so.0'->'lib/cctbx_xray_observations_ext.so.0.0.1' 'lib/cctbx_xray_observations_ext.so'->'lib/cctbx_xray_observations_ext.so.0.0.1' g++ -o lib/determine_unit_cell_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=determine_unit_cell_ext.so.0 cctbx/uctbx/determine_unit_cell/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/determine_unit_cell_ext.so.0.0.1' 'lib/determine_unit_cell_ext.so.0'->'lib/determine_unit_cell_ext.so.0.0.1' 'lib/determine_unit_cell_ext.so'->'lib/determine_unit_cell_ext.so.0.0.1' g++ -o lib/cctbx_uctbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_uctbx_ext.so.0 cctbx/uctbx/boost_python/uctbx_ext.o cctbx/uctbx/boost_python/fast_minimum_reduction.o cctbx/uctbx/boost_python/niggli_reduction.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/gltbx_glu_ext.so.0.0.1' 'lib/gltbx_glu_ext.so.0'->'lib/gltbx_glu_ext.so.0.0.1' 'lib/gltbx_glu_ext.so'->'lib/gltbx_glu_ext.so.0.0.1' g++ -o lib/gltbx_viewer_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_viewer_utils_ext.so.0 gltbx/viewer_utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lGLU -lGL -lm Create symlinks for: 'lib/iotbx_mtz_ext.so.0.0.1' 'lib/iotbx_mtz_ext.so.0'->'lib/iotbx_mtz_ext.so.0.0.1' 'lib/iotbx_mtz_ext.so'->'lib/iotbx_mtz_ext.so.0.0.1' g++ -o lib/cctbx_math_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_math_ext.so.0 cctbx/math/boost_python/math_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/gltbx_viewer_utils_ext.so.0.0.1' 'lib/gltbx_viewer_utils_ext.so.0'->'lib/gltbx_viewer_utils_ext.so.0.0.1' 'lib/gltbx_viewer_utils_ext.so'->'lib/gltbx_viewer_utils_ext.so.0.0.1' g++ -o lib/gltbx_gl_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_gl_ext.so.0 gltbx/gl_ext.o gltbx/gl_defines_00_bpl.o gltbx/gl_defines_01_bpl.o gltbx/gl_defines_02_bpl.o gltbx/gl_defines_03_bpl.o gltbx/gl_defines_04_bpl.o gltbx/gl_defines_05_bpl.o gltbx/gl_defines_06_bpl.o gltbx/gl_defines_07_bpl.o gltbx/gl_functions_00_bpl.o gltbx/gl_functions_01_bpl.o gltbx/gl_functions_02_bpl.o gltbx/gl_functions_03_bpl.o gltbx/gl_functions_04_bpl.o gltbx/gl_functions_05_bpl.o gltbx/gl_functions_06_bpl.o gltbx/gl_functions_07_bpl.o gltbx/gl_functions_08_bpl.o gltbx/gl_functions_09_bpl.o gltbx/gl_functions_10_bpl.o gltbx/gl_functions_11_bpl.o gltbx/gl_functions_12_bpl.o gltbx/gl_functions_13_bpl.o gltbx/gl_functions_14_bpl.o gltbx/gl_functions_15_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lGLU -lGL -lm Create symlinks for: 'lib/cctbx_math_ext.so.0.0.1' 'lib/cctbx_math_ext.so.0'->'lib/cctbx_math_ext.so.0.0.1' 'lib/cctbx_math_ext.so'->'lib/cctbx_math_ext.so.0.0.1' g++ -o lib/cctbx_merging_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_merging_ext.so.0 cctbx/merging/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_merging_ext.so.0.0.1' 'lib/cctbx_merging_ext.so.0'->'lib/cctbx_merging_ext.so.0.0.1' 'lib/cctbx_merging_ext.so'->'lib/cctbx_merging_ext.so.0.0.1' g++ -o lib/cctbx_maptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_maptbx_ext.so.0 cctbx/maptbx/boost_python/maptbx_ext.o cctbx/maptbx/boost_python/grid_indices_around_sites.o cctbx/maptbx/boost_python/grid_tags.o cctbx/maptbx/boost_python/gridding.o cctbx/maptbx/boost_python/misc.o cctbx/maptbx/boost_python/peak_search.o cctbx/maptbx/boost_python/pymol_interface.o cctbx/maptbx/boost_python/statistics.o cctbx/maptbx/boost_python/structure_factors.o cctbx/maptbx/boost_python/coordinate_transformers.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_uctbx_ext.so.0.0.1' 'lib/cctbx_uctbx_ext.so.0'->'lib/cctbx_uctbx_ext.so.0.0.1' 'lib/cctbx_uctbx_ext.so'->'lib/cctbx_uctbx_ext.so.0.0.1' g++ -o lib/cctbx_orientation_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_orientation_ext.so.0 cctbx/boost_python/orientation_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_orientation_ext.so.0.0.1' 'lib/cctbx_orientation_ext.so.0'->'lib/cctbx_orientation_ext.so.0.0.1' 'lib/cctbx_orientation_ext.so'->'lib/cctbx_orientation_ext.so.0.0.1' g++ -o lib/cctbx_symmetry_search_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_symmetry_search_ext.so.0 cctbx/symmetry_search/boost_python/symmetry_search_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/gltbx_gl_ext.so.0.0.1' 'lib/gltbx_gl_ext.so.0'->'lib/gltbx_gl_ext.so.0.0.1' 'lib/gltbx_gl_ext.so'->'lib/gltbx_gl_ext.so.0.0.1' g++ -o lib/dxtbx_model_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_model_ext.so.0 dxtbx/src/dxtbx/model/boost_python/beam.o dxtbx/src/dxtbx/model/boost_python/spectrum.o dxtbx/src/dxtbx/model/boost_python/goniometer.o dxtbx/src/dxtbx/model/boost_python/kappa_goniometer.o dxtbx/src/dxtbx/model/boost_python/multi_axis_goniometer.o dxtbx/src/dxtbx/model/boost_python/panel.o dxtbx/src/dxtbx/model/boost_python/detector.o dxtbx/src/dxtbx/model/boost_python/scan.o dxtbx/src/dxtbx/model/boost_python/scan_helpers.o dxtbx/src/dxtbx/model/boost_python/crystal.o dxtbx/src/dxtbx/model/boost_python/parallax_correction.o dxtbx/src/dxtbx/model/boost_python/pixel_to_millimeter.o dxtbx/src/dxtbx/model/boost_python/history.o dxtbx/src/dxtbx/model/boost_python/experiment.o dxtbx/src/dxtbx/model/boost_python/experiment_list.o dxtbx/src/dxtbx/model/boost_python/model_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/usr/lib -lm -ltiff -lboost_python314 -lcbf -lboost_thread -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python314 -lcbf -lhdf5_serial Create symlinks for: 'lib/cctbx_symmetry_search_ext.so.0.0.1' 'lib/cctbx_symmetry_search_ext.so.0'->'lib/cctbx_symmetry_search_ext.so.0.0.1' 'lib/cctbx_symmetry_search_ext.so'->'lib/cctbx_symmetry_search_ext.so.0.0.1' g++ -o lib/dxtbx_imageset_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_imageset_ext.so.0 dxtbx/src/dxtbx/boost_python/imageset_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/usr/lib -lm -ltiff -lboost_python314 -lcbf -lhdf5_serial -lboost_thread -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python314 -lcbf -lhdf5_serial Create symlinks for: 'lib/dxtbx_masking_ext.so.0.0.1' 'lib/dxtbx_masking_ext.so.0'->'lib/dxtbx_masking_ext.so.0.0.1' 'lib/dxtbx_masking_ext.so'->'lib/dxtbx_masking_ext.so.0.0.1' g++ -o lib/cctbx_multipolar_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_multipolar_ext.so.0 cctbx/multipolar/aspherical_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_multipolar_ext.so.0.0.1' 'lib/cctbx_multipolar_ext.so.0'->'lib/cctbx_multipolar_ext.so.0.0.1' 'lib/cctbx_multipolar_ext.so'->'lib/cctbx_multipolar_ext.so.0.0.1' g++ -o lib/gltbx_fonts_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_fonts_ext.so.0 gltbx/fonts_ext.o gltbx/font_ucs_8x13.o gltbx/font_ucs_9x15.o gltbx/font_ucs_10x20.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lGLU -lGL -lm Create symlinks for: 'lib/gltbx_fonts_ext.so.0.0.1' 'lib/gltbx_fonts_ext.so.0'->'lib/gltbx_fonts_ext.so.0.0.1' 'lib/gltbx_fonts_ext.so'->'lib/gltbx_fonts_ext.so.0.0.1' g++ -o lib/cctbx_sgtbx_asu_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_sgtbx_asu_ext.so.0 cctbx/sgtbx/direct_space_asu/proto/asu_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx_sgtbx_asu -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_sgtbx_ext.so.0.0.1' 'lib/cctbx_sgtbx_ext.so.0'->'lib/cctbx_sgtbx_ext.so.0.0.1' 'lib/cctbx_sgtbx_ext.so'->'lib/cctbx_sgtbx_ext.so.0.0.1' g++ -o lib/cctbx_french_wilson_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_french_wilson_ext.so.0 cctbx/boost_python/french_wilson_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_french_wilson_ext.so.0.0.1' 'lib/cctbx_french_wilson_ext.so.0'->'lib/cctbx_french_wilson_ext.so.0.0.1' 'lib/cctbx_french_wilson_ext.so'->'lib/cctbx_french_wilson_ext.so.0.0.1' g++ -o lib/cctbx_asymmetric_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_asymmetric_map_ext.so.0 cctbx/maptbx/asymmetric_map_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lasymmetric_map -liotbx_xplor -lcctbx_sgtbx_asu -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_asymmetric_map_ext.so.0.0.1' 'lib/cctbx_asymmetric_map_ext.so.0'->'lib/cctbx_asymmetric_map_ext.so.0.0.1' 'lib/cctbx_asymmetric_map_ext.so'->'lib/cctbx_asymmetric_map_ext.so.0.0.1' g++ -o lib/cctbx_geometry_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_geometry_ext.so.0 cctbx/geometry/boost_python/geometry_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_xray_ext.so.0.0.1' 'lib/cctbx_xray_ext.so.0'->'lib/cctbx_xray_ext.so.0.0.1' 'lib/cctbx_xray_ext.so'->'lib/cctbx_xray_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_sgtbx_asu_ext.so.0.0.1' 'lib/cctbx_sgtbx_asu_ext.so.0'->'lib/cctbx_sgtbx_asu_ext.so.0.0.1' 'lib/cctbx_sgtbx_asu_ext.so'->'lib/cctbx_sgtbx_asu_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_neutron_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_neutron_ext.so.0 cctbx/eltbx/boost_python/neutron_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/cctbx_masks_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_masks_ext.so.0 cctbx/masks/boost_python/masks_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_neutron_ext.so.0.0.1' 'lib/cctbx_eltbx_neutron_ext.so.0'->'lib/cctbx_eltbx_neutron_ext.so.0.0.1' 'lib/cctbx_eltbx_neutron_ext.so'->'lib/cctbx_eltbx_neutron_ext.so.0.0.1' g++ -o lib/cctbx_anharmonic_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_anharmonic_ext.so.0 cctbx/adptbx/boost_python/anharmonic_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_geometry_ext.so.0.0.1' 'lib/cctbx_geometry_ext.so.0'->'lib/cctbx_geometry_ext.so.0.0.1' 'lib/cctbx_geometry_ext.so'->'lib/cctbx_geometry_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_tiny_pse_ext.so.0 cctbx/eltbx/boost_python/tiny_pse_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_anharmonic_ext.so.0.0.1' 'lib/cctbx_anharmonic_ext.so.0'->'lib/cctbx_anharmonic_ext.so.0.0.1' 'lib/cctbx_anharmonic_ext.so'->'lib/cctbx_anharmonic_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_xray_scattering_ext.so.0 cctbx/eltbx/boost_python/xray_scattering_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_masks_ext.so.0.0.1' 'lib/cctbx_masks_ext.so.0'->'lib/cctbx_masks_ext.so.0.0.1' 'lib/cctbx_masks_ext.so'->'lib/cctbx_masks_ext.so.0.0.1' g++ -o lib/cctbx_dmtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_dmtbx_ext.so.0 cctbx/dmtbx/boost_python/dmtbx_ext.o cctbx/dmtbx/boost_python/triplet_phase_relation.o cctbx/dmtbx/boost_python/triplet_generator.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1' 'lib/cctbx_eltbx_tiny_pse_ext.so.0'->'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1' 'lib/cctbx_eltbx_tiny_pse_ext.so'->'lib/cctbx_eltbx_tiny_pse_ext.so.0.0.1' g++ -o lib/cctbx_geometry_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_geometry_restraints_ext.so.0 cctbx/geometry_restraints/geometry_restraints_ext.o cctbx/geometry_restraints/bond_bpl.o cctbx/geometry_restraints/bond_similarity_bpl.o cctbx/geometry_restraints/bond_sorted_bpl.o cctbx/geometry_restraints/nonbonded_bpl.o cctbx/geometry_restraints/nonbonded_sorted_bpl.o cctbx/geometry_restraints/angle_bpl.o cctbx/geometry_restraints/dihedral_bpl.o cctbx/geometry_restraints/chirality_bpl.o cctbx/geometry_restraints/planarity_bpl.o cctbx/geometry_restraints/parallelity_bpl.o cctbx/geometry_restraints/motif_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_crystal_ext.so.0.0.1' 'lib/cctbx_crystal_ext.so.0'->'lib/cctbx_crystal_ext.so.0.0.1' 'lib/cctbx_crystal_ext.so'->'lib/cctbx_crystal_ext.so.0.0.1' g++ -o lib/cctbx_adp_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_adp_restraints_ext.so.0 cctbx/adp_restraints/adp_restraints_bpl.o cctbx/adp_restraints/adp_restraints_ext.o cctbx/adp_restraints/rigid_bond_bpl.o cctbx/adp_restraints/rigu_bpl.o cctbx/adp_restraints/adp_similarity_bpl.o cctbx/adp_restraints/isotropic_adp_bpl.o cctbx/adp_restraints/aniso_restraints_bpl.o cctbx/adp_restraints/fixed_u_eq_adp_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_dmtbx_ext.so.0.0.1' 'lib/cctbx_dmtbx_ext.so.0'->'lib/cctbx_dmtbx_ext.so.0.0.1' 'lib/cctbx_dmtbx_ext.so'->'lib/cctbx_dmtbx_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_attenuation_coefficient_ext.so.0 cctbx/eltbx/boost_python/attenuation_coefficient_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1' 'lib/cctbx_eltbx_xray_scattering_ext.so.0'->'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1' 'lib/cctbx_eltbx_xray_scattering_ext.so'->'lib/cctbx_eltbx_xray_scattering_ext.so.0.0.1' Create symlinks for: 'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1' 'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0'->'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1' 'lib/cctbx_eltbx_attenuation_coefficient_ext.so'->'lib/cctbx_eltbx_attenuation_coefficient_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_icsd_radii_ext.so.0 cctbx/eltbx/boost_python/icsd_radii_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/gltbx_util_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_util_ext.so.0 gltbx/util_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lGLU -lGL -lm Create symlinks for: 'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_icsd_radii_ext.so.0'->'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1' 'lib/cctbx_eltbx_icsd_radii_ext.so'->'lib/cctbx_eltbx_icsd_radii_ext.so.0.0.1' g++ -o lib/cctbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_array_family_flex_ext.so.0 cctbx/array_family/boost_python/flex_ext.o cctbx/array_family/boost_python/flex_hendrickson_lattman.o cctbx/array_family/boost_python/flex_miller_index.o cctbx/array_family/boost_python/flex_xray_scatterer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/gltbx_util_ext.so.0.0.1' 'lib/gltbx_util_ext.so.0'->'lib/gltbx_util_ext.so.0.0.1' 'lib/gltbx_util_ext.so'->'lib/gltbx_util_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_chemical_elements_ext.so.0 cctbx/eltbx/boost_python/chemical_elements_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1' 'lib/cctbx_eltbx_chemical_elements_ext.so.0'->'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1' 'lib/cctbx_eltbx_chemical_elements_ext.so'->'lib/cctbx_eltbx_chemical_elements_ext.so.0.0.1' g++ -o lib/gltbx_quadrics_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=gltbx_quadrics_ext.so.0 gltbx/quadrics_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lGLU -lGL -lm Create symlinks for: 'lib/gltbx_quadrics_ext.so.0.0.1' 'lib/gltbx_quadrics_ext.so.0'->'lib/gltbx_quadrics_ext.so.0.0.1' 'lib/gltbx_quadrics_ext.so'->'lib/gltbx_quadrics_ext.so.0.0.1' g++ -o lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_eltbx_fp_fdp_ext.so.0 cctbx/eltbx/boost_python/fp_fdp_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1' 'lib/cctbx_eltbx_fp_fdp_ext.so.0'->'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1' 'lib/cctbx_eltbx_fp_fdp_ext.so'->'lib/cctbx_eltbx_fp_fdp_ext.so.0.0.1' g++ -o lib/cctbx_emma_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_emma_ext.so.0 cctbx/boost_python/emma_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_emma_ext.so.0.0.1' 'lib/cctbx_emma_ext.so.0'->'lib/cctbx_emma_ext.so.0.0.1' 'lib/cctbx_emma_ext.so'->'lib/cctbx_emma_ext.so.0.0.1' g++ -o lib/cctbx_miller_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_miller_ext.so.0 cctbx/miller/boost_python/miller_ext.o cctbx/miller/boost_python/asu.o cctbx/miller/boost_python/bins.o cctbx/miller/boost_python/change_basis.o cctbx/miller/boost_python/expand_to_p1.o cctbx/miller/boost_python/index_generator.o cctbx/miller/boost_python/index_span.o cctbx/miller/boost_python/match_bijvoet_mates.o cctbx/miller/boost_python/match_indices.o cctbx/miller/boost_python/match_multi_indices.o cctbx/miller/boost_python/merge_equivalents.o cctbx/miller/boost_python/phase_integrator.o cctbx/miller/boost_python/phase_transfer.o cctbx/miller/boost_python/sym_equiv.o cctbx/miller/boost_python/f_calc_map.o cctbx/miller/boost_python/lookup_utils.o cctbx/miller/boost_python/amplitude_normalisation.o cctbx/miller/boost_python/randomize_amplitude_and_phase.o cctbx/miller/boost_python/slices.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_adp_restraints_ext.so.0.0.1' 'lib/cctbx_adp_restraints_ext.so.0'->'lib/cctbx_adp_restraints_ext.so.0.0.1' 'lib/cctbx_adp_restraints_ext.so'->'lib/cctbx_adp_restraints_ext.so.0.0.1' g++ -o lib/cctbx_covariance_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_covariance_ext.so.0 cctbx/covariance/boost_python/covariance_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_array_family_flex_ext.so.0.0.1' 'lib/cctbx_array_family_flex_ext.so.0'->'lib/cctbx_array_family_flex_ext.so.0.0.1' 'lib/cctbx_array_family_flex_ext.so'->'lib/cctbx_array_family_flex_ext.so.0.0.1' g++ -o lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=cctbx_maptbx_bcr_bcr_ext.so.0 cctbx/maptbx/bcr/bcr_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/cctbx_covariance_ext.so.0.0.1' 'lib/cctbx_covariance_ext.so.0'->'lib/cctbx_covariance_ext.so.0.0.1' 'lib/cctbx_covariance_ext.so'->'lib/cctbx_covariance_ext.so.0.0.1' g++ -o lib/dxtbx_flumpy.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=dxtbx_flumpy.so.0 dxtbx/src/dxtbx/boost_python/flumpy.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/base/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -L/usr/lib -lm -ltiff -lboost_python314 -lcbf -lboost_thread -lm -lcctbx -lscitbx_boost_python -ltiff -lboost_python314 -lcbf -lhdf5_serial Create symlinks for: 'lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1' 'lib/cctbx_maptbx_bcr_bcr_ext.so.0'->'lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1' 'lib/cctbx_maptbx_bcr_bcr_ext.so'->'lib/cctbx_maptbx_bcr_bcr_ext.so.0.0.1' g++ -o lib/libiotbx_pdb.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libiotbx_pdb.so.0 iotbx/pdb/hybrid_36_c.o iotbx/pdb/hybrid_36_cpp.o iotbx/pdb/utils.o iotbx/pdb/write_utils.o iotbx/pdb/hierarchy.o iotbx/pdb/hierarchy_select.o iotbx/pdb/hierarchy_atoms.o iotbx/pdb/construct_hierarchy.o iotbx/pdb/overall_counts.o iotbx/pdb/hierarchy_write.o iotbx/pdb/atom_selection.o iotbx/pdb/input.o iotbx/pdb/input_write.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread Create symlinks for: 'lib/cctbx_miller_ext.so.0.0.1' 'lib/cctbx_miller_ext.so.0'->'lib/cctbx_miller_ext.so.0.0.1' 'lib/cctbx_miller_ext.so'->'lib/cctbx_miller_ext.so.0.0.1' g++ -o lib/iotbx_scalepack_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_scalepack_ext.so.0 iotbx/misc/boost_python/scalepack_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_scalepack_ext.so.0.0.1' 'lib/iotbx_scalepack_ext.so.0'->'lib/iotbx_scalepack_ext.so.0.0.1' 'lib/iotbx_scalepack_ext.so'->'lib/iotbx_scalepack_ext.so.0.0.1' g++ -o lib/iotbx_shelx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_shelx_ext.so.0 iotbx/shelx/shelx_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/libiotbx_pdb.so.0.0.1' 'lib/libiotbx_pdb.so.0'->'lib/libiotbx_pdb.so.0.0.1' 'lib/libiotbx_pdb.so'->'lib/libiotbx_pdb.so.0.0.1' Create symlinks for: 'lib/iotbx_shelx_ext.so.0.0.1' 'lib/iotbx_shelx_ext.so.0'->'lib/iotbx_shelx_ext.so.0.0.1' 'lib/iotbx_shelx_ext.so'->'lib/iotbx_shelx_ext.so.0.0.1' g++ -o lib/iotbx_pdb_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_pdb_ext.so.0 iotbx/pdb/ext.o iotbx/pdb/hybrid_36_bpl.o iotbx/pdb/common_residue_names_bpl.o iotbx/pdb/rna_dna_atom_names_bpl.o iotbx/pdb/input_bpl.o iotbx/pdb/xray_structure_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/iotbx_wildcard_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_wildcard_ext.so.0 iotbx/wildcard_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/dxtbx_flumpy.so.0.0.1' 'lib/dxtbx_flumpy.so.0'->'lib/dxtbx_flumpy.so.0.0.1' 'lib/dxtbx_flumpy.so'->'lib/dxtbx_flumpy.so.0.0.1' g++ -o lib/iotbx_xplor_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_xplor_ext.so.0 iotbx/xplor/boost_python/xplor_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -liotbx_xplor -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/iotbx_wildcard_ext.so.0.0.1' 'lib/iotbx_wildcard_ext.so.0'->'lib/iotbx_wildcard_ext.so.0.0.1' 'lib/iotbx_wildcard_ext.so'->'lib/iotbx_wildcard_ext.so.0.0.1' g++ -o spotfinder/dxtbx_toolbox/libdistl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/dxtbx_toolbox/libdistl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/iotbx_xplor_ext.so.0.0.1' 'lib/iotbx_xplor_ext.so.0'->'lib/iotbx_xplor_ext.so.0.0.1' 'lib/iotbx_xplor_ext.so'->'lib/iotbx_xplor_ext.so.0.0.1' g++ -o spotfinder/dxtbx_toolbox/distl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/dxtbx_toolbox/distl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/iotbx_pdb_ext.so.0.0.1' 'lib/iotbx_pdb_ext.so.0'->'lib/iotbx_pdb_ext.so.0.0.1' 'lib/iotbx_pdb_ext.so'->'lib/iotbx_pdb_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/spot.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/spot.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/dxtbx_model_ext.so.0.0.1' 'lib/dxtbx_model_ext.so.0'->'lib/dxtbx_model_ext.so.0.0.1' 'lib/dxtbx_model_ext.so'->'lib/dxtbx_model_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/libdistl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/libdistl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/core_toolbox/hough.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/hough.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/cctbx_maptbx_ext.so.0.0.1' 'lib/cctbx_maptbx_ext.so.0'->'lib/cctbx_maptbx_ext.so.0.0.1' 'lib/cctbx_maptbx_ext.so'->'lib/cctbx_maptbx_ext.so.0.0.1' g++ -o spotfinder/core_toolbox/distl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/distl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/core_toolbox/spotfilter.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Ispotfinder/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/src -Ispotfinder/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/spotfilter.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/masks/atom_mask.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/masks/atom_mask.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/tls/decompose.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/tls/decompose.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/dps_core/dps_core.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/dps_core/dps_core.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/cctbx_geometry_restraints_ext.so.0.0.1' 'lib/cctbx_geometry_restraints_ext.so.0'->'lib/cctbx_geometry_restraints_ext.so.0.0.1' 'lib/cctbx_geometry_restraints_ext.so'->'lib/cctbx_geometry_restraints_ext.so.0.0.1' g++ -o rstbx/dps_core/directional_fft.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/dps_core/directional_fft.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/dxtbx_imageset_ext.so.0.0.1' 'lib/dxtbx_imageset_ext.so.0'->'lib/dxtbx_imageset_ext.so.0.0.1' 'lib/dxtbx_imageset_ext.so'->'lib/dxtbx_imageset_ext.so.0.0.1' g++ -o rstbx/dps_core/direction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/dps_core/direction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/iotbx_pdb_hierarchy_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=iotbx_pdb_hierarchy_ext.so.0 iotbx/pdb/hierarchy_ext.o iotbx/pdb/hierarchy_atom_bpl.o iotbx/pdb/hierarchy_atoms_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o rstbx/indexing_api/indexing_api.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/indexing_api.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libspotfinder.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libspotfinder.so.0 spotfinder/core_toolbox/spot.o spotfinder/core_toolbox/libdistl.o spotfinder/core_toolbox/hough.o spotfinder/core_toolbox/distl.o spotfinder/core_toolbox/spotfilter.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lann-cctbx -lomptbx -lm Create symlinks for: 'lib/libspotfinder.so.0.0.1' 'lib/libspotfinder.so.0'->'lib/libspotfinder.so.0.0.1' 'lib/libspotfinder.so'->'lib/libspotfinder.so.0.0.1' g++ -o lib/libdxtbxspotfinder.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libdxtbxspotfinder.so.0 spotfinder/dxtbx_toolbox/libdistl.o spotfinder/dxtbx_toolbox/distl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lspotfinder -lann-cctbx -lomptbx -lm Create symlinks for: 'lib/libdxtbxspotfinder.so.0.0.1' 'lib/libdxtbxspotfinder.so.0'->'lib/libdxtbxspotfinder.so.0.0.1' 'lib/libdxtbxspotfinder.so'->'lib/libdxtbxspotfinder.so.0.0.1' g++ -o rstbx/diffraction/ewald_sphere.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/ewald_sphere.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libmmtbx_tls.so.0.0.1 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread -shared -Wl,-z,relro -lhdf5_serial -Wl,-soname=libmmtbx_tls.so.0 mmtbx/tls/decompose.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lm g++ -o rstbx/diffraction/partial_spot_position_partial_H.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/partial_spot_position_partial_H.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/libmmtbx_tls.so.0.0.1' 'lib/libmmtbx_tls.so.0'->'lib/libmmtbx_tls.so.0.0.1' 'lib/libmmtbx_tls.so'->'lib/libmmtbx_tls.so.0.0.1' g++ -o scitbx/minpack/raw.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/minpack/raw.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ gcc -o scitbx/slatec/lib_c.o -c -std=gnu17 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/slatec/lib_c.c g++ -o lib/libscitbx_slatec.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libscitbx_slatec.so.0 scitbx/slatec/lib_c.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lm Create symlinks for: 'lib/libscitbx_slatec.so.0.0.1' 'lib/libscitbx_slatec.so.0'->'lib/libscitbx_slatec.so.0.0.1' 'lib/libscitbx_slatec.so'->'lib/libscitbx_slatec.so.0.0.1' g++ -o smtbx/refinement/constraints/affine.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/affine.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/geometrical_hydrogens.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/geometrical_hydrogens.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/iotbx_pdb_hierarchy_ext.so.0.0.1' 'lib/iotbx_pdb_hierarchy_ext.so.0'->'lib/iotbx_pdb_hierarchy_ext.so.0.0.1' 'lib/iotbx_pdb_hierarchy_ext.so'->'lib/iotbx_pdb_hierarchy_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/occupancy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/occupancy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libscitbx_minpack.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libscitbx_minpack.so.0 scitbx/minpack/raw.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lm Create symlinks for: 'lib/libscitbx_minpack.so.0.0.1' 'lib/libscitbx_minpack.so.0'->'lib/libscitbx_minpack.so.0.0.1' 'lib/libscitbx_minpack.so'->'lib/libscitbx_minpack.so.0.0.1' g++ -o smtbx/refinement/constraints/reparametrisation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/reparametrisation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/rigid.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/rigid.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/same_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/same_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/librstbx.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=librstbx.so.0 rstbx/dps_core/dps_core.o rstbx/dps_core/directional_fft.o rstbx/dps_core/direction.o rstbx/indexing_api/indexing_api.o rstbx/diffraction/ewald_sphere.o rstbx/diffraction/partial_spot_position_partial_H.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lcctbx -lm Create symlinks for: 'lib/librstbx.so.0.0.1' 'lib/librstbx.so.0'->'lib/librstbx.so.0.0.1' 'lib/librstbx.so'->'lib/librstbx.so.0.0.1' g++ -o smtbx/refinement/constraints/scaled_adp.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/scaled_adp.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/shared.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/shared.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/special_position.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/special_position.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/symmetry_equivalent.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/symmetry_equivalent.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/u_eq_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/u_eq_dependent_u_iso.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/u_iso_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/u_iso_dependent_u_iso.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/data_model.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/data_model.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/tokenizer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/tokenizer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/numeric.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/numeric.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/alignment/alignment_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/alignment/alignment_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/building/loop_closure/ccd_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/building/loop_closure/ccd_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/bulk_solvent/bulk_solvent_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/bulk_solvent/bulk_solvent_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/bulk_solvent/bulk_solvent.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/bulk_solvent/bulk_solvent.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/den/boost_python/den_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/den/boost_python/den_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libsmtbx_refinement_constraints.so.0.0.1 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread -shared -Wl,-z,relro -lhdf5_serial -Wl,-soname=libsmtbx_refinement_constraints.so.0 smtbx/refinement/constraints/affine.o smtbx/refinement/constraints/geometrical_hydrogens.o smtbx/refinement/constraints/occupancy.o smtbx/refinement/constraints/reparametrisation.o smtbx/refinement/constraints/rigid.o smtbx/refinement/constraints/same_group.o smtbx/refinement/constraints/scaled_adp.o smtbx/refinement/constraints/shared.o smtbx/refinement/constraints/special_position.o smtbx/refinement/constraints/symmetry_equivalent.o smtbx/refinement/constraints/u_eq_dependent_u_iso.o smtbx/refinement/constraints/u_iso_dependent_u_iso.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o lib/libxcif.so.0.0.1 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread -shared -Wl,-z,relro -lhdf5_serial -Wl,-soname=libxcif.so.0 xcif/data_model.o xcif/tokenizer.o xcif/numeric.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread Create symlinks for: 'lib/libxcif.so.0.0.1' 'lib/libxcif.so.0'->'lib/libxcif.so.0.0.1' 'lib/libxcif.so'->'lib/libxcif.so.0.0.1' g++ -o mmtbx/secondary_structure/dssp_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/secondary_structure/dssp_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/libsmtbx_refinement_constraints.so.0.0.1' 'lib/libsmtbx_refinement_constraints.so.0'->'lib/libsmtbx_refinement_constraints.so.0.0.1' 'lib/libsmtbx_refinement_constraints.so'->'lib/libsmtbx_refinement_constraints.so.0.0.1' g++ -o mmtbx/dynamics/dynamics_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/dynamics/dynamics_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/libmmtbx_masks.so.0.0.1 -shared -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -Wl,-soname=libmmtbx_masks.so.0 mmtbx/masks/atom_mask.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lomptbx -lcctbx_sgtbx_asu -lm Create symlinks for: 'lib/libmmtbx_masks.so.0.0.1' 'lib/libmmtbx_masks.so.0'->'lib/libmmtbx_masks.so.0.0.1' 'lib/libmmtbx_masks.so'->'lib/libmmtbx_masks.so.0.0.1' g++ -o mmtbx/dynamics/dynamics.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/dynamics/dynamics.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/f_model/f_model_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/f_model/f_model_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/den/den.h:2, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/den/boost_python/den_ext.cpp:12: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensor_rank_2.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = mmtbx::den::den_simple_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/den/boost_python/den_ext.cpp:53:78: required from here 53 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 54 | "shared_den_simple_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o lib/mmtbx_dssp_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_dssp_ext.so.0 mmtbx/secondary_structure/dssp_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_dssp_ext.so.0.0.1' 'lib/mmtbx_dssp_ext.so.0'->'lib/mmtbx_dssp_ext.so.0.0.1' 'lib/mmtbx_dssp_ext.so'->'lib/mmtbx_dssp_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/clash_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/clash_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_alignment_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_alignment_ext.so.0 mmtbx/alignment/alignment_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_alignment_ext.so.0.0.1' 'lib/mmtbx_alignment_ext.so.0'->'lib/mmtbx_alignment_ext.so.0.0.1' 'lib/mmtbx_alignment_ext.so'->'lib/mmtbx_alignment_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/indexing_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/indexing_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_dynamics_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_dynamics_ext.so.0 mmtbx/dynamics/dynamics_ext.o mmtbx/dynamics/dynamics.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_dynamics_ext.so.0.0.1' 'lib/mmtbx_dynamics_ext.so.0'->'lib/mmtbx_dynamics_ext.so.0.0.1' 'lib/mmtbx_dynamics_ext.so'->'lib/mmtbx_dynamics_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/primitive_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/primitive_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/asa_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o lib/mmtbx_building_loop_closure_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_building_loop_closure_ext.so.0 mmtbx/building/loop_closure/ccd_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -liotbx_pdb -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_building_loop_closure_ext.so.0.0.1' 'lib/mmtbx_building_loop_closure_ext.so.0'->'lib/mmtbx_building_loop_closure_ext.so.0.0.1' 'lib/mmtbx_building_loop_closure_ext.so'->'lib/mmtbx_building_loop_closure_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/shared_types_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/shared_types_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/clash_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/extract.hpp:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/indexing_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/detail/sp_counted_base.hpp:20, from /usr/include/boost/smart_ptr/detail/shared_count.hpp:22, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/shared_types_ext.cpp:2: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ g++ -o lib/mmtbx_geometry_primitive_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_primitive_ext.so.0 mmtbx/geometry/boost_python/primitive_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_geometry_primitive_ext.so.0.0.1' 'lib/mmtbx_geometry_primitive_ext.so.0'->'lib/mmtbx_geometry_primitive_ext.so.0.0.1' 'lib/mmtbx_geometry_primitive_ext.so'->'lib/mmtbx_geometry_primitive_ext.so.0.0.1' g++ -o mmtbx/geometry/boost_python/sphere_surface_sampling_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry/boost_python/sphere_surface_sampling_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_den_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_den_restraints_ext.so.0 mmtbx/den/boost_python/den_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_den_restraints_ext.so.0.0.1' 'lib/mmtbx_den_restraints_ext.so.0'->'lib/mmtbx_den_restraints_ext.so.0.0.1' 'lib/mmtbx_den_restraints_ext.so'->'lib/mmtbx_den_restraints_ext.so.0.0.1' g++ -o mmtbx/hydrogens/hydrogens_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/hydrogens/hydrogens_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_f_model_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_f_model_ext.so.0 mmtbx/f_model/f_model_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_f_model_ext.so.0.0.1' 'lib/mmtbx_f_model_ext.so.0'->'lib/mmtbx_f_model_ext.so.0.0.1' 'lib/mmtbx_f_model_ext.so'->'lib/mmtbx_f_model_ext.so.0.0.1' g++ -o mmtbx/masks/masks_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/masks/masks_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_shared_types_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_shared_types_ext.so.0 mmtbx/geometry/boost_python/shared_types_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_geometry_shared_types_ext.so.0.0.1' 'lib/mmtbx_geometry_shared_types_ext.so.0'->'lib/mmtbx_geometry_shared_types_ext.so.0.0.1' 'lib/mmtbx_geometry_shared_types_ext.so'->'lib/mmtbx_geometry_shared_types_ext.so.0.0.1' g++ -o mmtbx/max_lik/max_lik_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/max_lik/max_lik_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_sphere_surface_sampling_ext.so.0 mmtbx/geometry/boost_python/sphere_surface_sampling_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1' 'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0'->'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1' 'lib/mmtbx_geometry_sphere_surface_sampling_ext.so'->'lib/mmtbx_geometry_sphere_surface_sampling_ext.so.0.0.1' g++ -o mmtbx/max_lik/max_lik.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/max_lik/max_lik.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_bulk_solvent_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_bulk_solvent_ext.so.0 mmtbx/bulk_solvent/bulk_solvent_ext.o mmtbx/bulk_solvent/bulk_solvent.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/mmtbx_hydrogens_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_hydrogens_ext.so.0 mmtbx/hydrogens/hydrogens_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_hydrogens_ext.so.0.0.1' 'lib/mmtbx_hydrogens_ext.so.0'->'lib/mmtbx_hydrogens_ext.so.0.0.1' 'lib/mmtbx_hydrogens_ext.so'->'lib/mmtbx_hydrogens_ext.so.0.0.1' g++ -o mmtbx/bulk_solvent/mosaic_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/bulk_solvent/mosaic_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_bulk_solvent_ext.so.0.0.1' 'lib/mmtbx_bulk_solvent_ext.so.0'->'lib/mmtbx_bulk_solvent_ext.so.0.0.1' 'lib/mmtbx_bulk_solvent_ext.so'->'lib/mmtbx_bulk_solvent_ext.so.0.0.1' g++ -o mmtbx/ncs/cartesian_restraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/ncs/cartesian_restraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_indexing_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_indexing_ext.so.0 mmtbx/geometry/boost_python/indexing_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o mmtbx/ncs/tncs_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/ncs/tncs_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_geometry_indexing_ext.so.0.0.1' 'lib/mmtbx_geometry_indexing_ext.so.0'->'lib/mmtbx_geometry_indexing_ext.so.0.0.1' 'lib/mmtbx_geometry_indexing_ext.so'->'lib/mmtbx_geometry_indexing_ext.so.0.0.1' g++ -o mmtbx/pair_interaction/interaction_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/pair_interaction/interaction_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_masks_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_masks_ext.so.0 mmtbx/masks/masks_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lmmtbx_masks -lcctbx_sgtbx_asu -lcctbx -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_masks_ext.so.0.0.1' 'lib/mmtbx_masks_ext.so.0'->'lib/mmtbx_masks_ext.so.0.0.1' 'lib/mmtbx_masks_ext.so'->'lib/mmtbx_masks_ext.so.0.0.1' g++ -o mmtbx/probe/boost_python/probe_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/probe/boost_python/probe_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_clash_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_clash_ext.so.0 mmtbx/geometry/boost_python/clash_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_geometry_clash_ext.so.0.0.1' 'lib/mmtbx_geometry_clash_ext.so.0'->'lib/mmtbx_geometry_clash_ext.so.0.0.1' 'lib/mmtbx_geometry_clash_ext.so'->'lib/mmtbx_geometry_clash_ext.so.0.0.1' g++ -o mmtbx/probe/Scoring.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/probe/Scoring.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_max_lik_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_max_lik_ext.so.0 mmtbx/max_lik/max_lik_ext.o mmtbx/max_lik/max_lik.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_max_lik_ext.so.0.0.1' 'lib/mmtbx_max_lik_ext.so.0'->'lib/mmtbx_max_lik_ext.so.0.0.1' 'lib/mmtbx_max_lik_ext.so'->'lib/mmtbx_max_lik_ext.so.0.0.1' g++ -o mmtbx/probe/DotSpheres.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/probe/DotSpheres.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_ncs_cartesian_restraints_ext.so.0 mmtbx/ncs/cartesian_restraints_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/mmtbx_mosaic_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_mosaic_ext.so.0 mmtbx/bulk_solvent/mosaic_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_mosaic_ext.so.0.0.1' 'lib/mmtbx_mosaic_ext.so.0'->'lib/mmtbx_mosaic_ext.so.0.0.1' 'lib/mmtbx_mosaic_ext.so'->'lib/mmtbx_mosaic_ext.so.0.0.1' Create symlinks for: 'lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1' 'lib/mmtbx_ncs_cartesian_restraints_ext.so.0'->'lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1' 'lib/mmtbx_ncs_cartesian_restraints_ext.so'->'lib/mmtbx_ncs_cartesian_restraints_ext.so.0.0.1' g++ -o mmtbx/probe/SpatialQuery.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/probe/SpatialQuery.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/geometry_restraints/boost_python/ramachandran_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/boost_python/ramachandran_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/reduce/boost_python/reduce_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/reduce/boost_python/reduce_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/xray/scatterer.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/restraints.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/dihedral.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/ramachandran.h:10, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/boost_python/ramachandran_ext.cpp:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i mmtbx::geometry_restraints::target_phi_psi(const scitbx::af::const_ref, scitbx::af::trivial_accessor>&, const scitbx::af::const_ref, scitbx::af::trivial_accessor>&, const phi_psi_proxy&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/ramachandran.h:314:35: required from here 314 | r = target_phi_psi(general_table, sites_cart, proxy);} | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/ramachandran.h:269:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref, scitbx::af::trivial_accessor>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 269 | for(int i=0; i, scitbx::af::trivial_accessor>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 284 | for(int i=0; i::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/format/parsing.hpp:21, from /usr/include/boost/format.hpp:50, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/dihedral.h:8: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = mmtbx::geometry_restraints::phi_psi_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/boost_python/ramachandran_ext.cpp:52:75: required from here 52 | scitbx::af::boost_python::shared_wrapper::wrap( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 53 | "shared_phi_psi_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o lib/mmtbx_ncs_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_ncs_ext.so.0 mmtbx/ncs/tncs_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_ncs_ext.so.0.0.1' 'lib/mmtbx_ncs_ext.so.0'->'lib/mmtbx_ncs_ext.so.0.0.1' 'lib/mmtbx_ncs_ext.so'->'lib/mmtbx_ncs_ext.so.0.0.1' g++ -o mmtbx/reduce/InteractionGraph.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/reduce/InteractionGraph.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ ar rc probe/lib/libprobelib.a mmtbx/probe/Scoring.o mmtbx/probe/DotSpheres.o mmtbx/probe/SpatialQuery.o ranlib probe/lib/libprobelib.a g++ -o mmtbx/reduce/Optimizers.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/reduce/Optimizers.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_geometry_asa_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_geometry_asa_ext.so.0 mmtbx/geometry/boost_python/asa_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/mmtbx_pair_interaction_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_pair_interaction_ext.so.0 mmtbx/pair_interaction/interaction_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_pair_interaction_ext.so.0.0.1' 'lib/mmtbx_pair_interaction_ext.so.0'->'lib/mmtbx_pair_interaction_ext.so.0.0.1' 'lib/mmtbx_pair_interaction_ext.so'->'lib/mmtbx_pair_interaction_ext.so.0.0.1' g++ -o mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/rotamer/fit_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/rotamer/fit_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_geometry_asa_ext.so.0.0.1' 'lib/mmtbx_geometry_asa_ext.so.0'->'lib/mmtbx_geometry_asa_ext.so.0.0.1' 'lib/mmtbx_geometry_asa_ext.so'->'lib/mmtbx_geometry_asa_ext.so.0.0.1' g++ -o mmtbx/rsr/rsr_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/rsr/rsr_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/wyckoff.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/sym_equiv_sites.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/crystal/direct_space_asu.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/asu_cache.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/bond.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/reference_coordinate.h:2, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp:13: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h: In member function ‘bool cctbx::sgtbx::site_symmetry_ops::contains(const cctbx::sgtbx::rt_mx&) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:100:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i cctbx::geometry_restraints::shared_proxy_remove(const scitbx::af::const_ref&, const scitbx::af::const_ref&) [with ProxyType = mmtbx::geometry_restraints::reference_coordinate_proxy]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp:80:41: required from here 80 | cctbx::geometry_restraints::shared_proxy_remove, ( | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/geometry_restraints/proxy_select.h:187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 187 | if (match_ctr != i_seqs.size()) { | ~~~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_3; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:203:75: required from here 203 | new tensor_rank_3_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h: In instantiation of ‘void cctbx::sgtbx::tensors::constraints::initialize(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:47:5: required from ‘cctbx::sgtbx::tensors::constraints::constraints(const scitbx::af::const_ref&, std::size_t, bool) [with FloatType = double; tensor_t = scitbx::matrix::tensors::tensor_rank_4; std::size_t = long unsigned int]’ 47 | initialize(symmetry_matrices, i_first_matrix_to_use, reciprocal_space); | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:214:75: required from here 214 | new tensor_rank_4_constraints_t(matrices_.const_ref(), 1, true)); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensors.h:185:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 185 | for (int j = 0; j < tensor_t::size(); j++) { | ~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_array.hpp:21, from /usr/include/boost/shared_array.hpp:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/tensor_rank_2.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/cctbx/sgtbx/site_symmetry.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = mmtbx::geometry_restraints::reference_coordinate_proxy; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp:61:25: required from here 61 | shared_w_t::wrap( | ~~~~~~~~~~~~~~~~^ 62 | "shared_reference_coordinate_proxy") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o mmtbx/scaling/scaling_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/scaling/scaling_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_ramachandran_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_ramachandran_restraints_ext.so.0 mmtbx/geometry_restraints/boost_python/ramachandran_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_ramachandran_restraints_ext.so.0.0.1' 'lib/mmtbx_ramachandran_restraints_ext.so.0'->'lib/mmtbx_ramachandran_restraints_ext.so.0.0.1' 'lib/mmtbx_ramachandran_restraints_ext.so'->'lib/mmtbx_ramachandran_restraints_ext.so.0.0.1' g++ -o mmtbx/scaling/twinning_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/scaling/twinning_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_probe_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_probe_ext.so.0 mmtbx/probe/boost_python/probe_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Lprobe/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/probe/lib -lprobelib -liotbx_pdb -lcctbx -lscitbx_boost_python -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/mmtbx_rsr_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_rsr_ext.so.0 mmtbx/rsr/rsr_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_rsr_ext.so.0.0.1' 'lib/mmtbx_rsr_ext.so.0'->'lib/mmtbx_rsr_ext.so.0.0.1' 'lib/mmtbx_rsr_ext.so'->'lib/mmtbx_rsr_ext.so.0.0.1' g++ -o mmtbx/scaling/relative_scaling_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/scaling/relative_scaling_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_probe_ext.so.0.0.1' 'lib/mmtbx_probe_ext.so.0'->'lib/mmtbx_probe_ext.so.0.0.1' 'lib/mmtbx_probe_ext.so'->'lib/mmtbx_probe_ext.so.0.0.1' g++ -o mmtbx/scaling/outlier_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/scaling/outlier_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_rotamer_fit_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_rotamer_fit_ext.so.0 mmtbx/rotamer/fit_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_rotamer_fit_ext.so.0.0.1' 'lib/mmtbx_rotamer_fit_ext.so.0'->'lib/mmtbx_rotamer_fit_ext.so.0.0.1' 'lib/mmtbx_rotamer_fit_ext.so'->'lib/mmtbx_rotamer_fit_ext.so.0.0.1' g++ -o mmtbx/secondary_structure/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/ccp4 -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/secondary_structure/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_reference_coordinate_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_reference_coordinate_ext.so.0 mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_reference_coordinate_ext.so.0.0.1' 'lib/mmtbx_reference_coordinate_ext.so.0'->'lib/mmtbx_reference_coordinate_ext.so.0.0.1' 'lib/mmtbx_reference_coordinate_ext.so'->'lib/mmtbx_reference_coordinate_ext.so.0.0.1' g++ -o mmtbx/tls/decompose_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/tls/decompose_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ ar rc reduce/lib/libreduce2lib.a mmtbx/reduce/PositionReturn.o mmtbx/reduce/InteractionGraph.o mmtbx/reduce/Optimizers.o ranlib reduce/lib/libreduce2lib.a g++ -o mmtbx/tls/tls_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/tls/tls_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/tls/optimise_amplitudes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/tls/optimise_amplitudes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_secondary_structure_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_secondary_structure_ext.so.0 mmtbx/secondary_structure/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_secondary_structure_ext.so.0.0.1' 'lib/mmtbx_secondary_structure_ext.so.0'->'lib/mmtbx_secondary_structure_ext.so.0.0.1' 'lib/mmtbx_secondary_structure_ext.so'->'lib/mmtbx_secondary_structure_ext.so.0.0.1' g++ -o mmtbx/tls/optimise_amplitudes_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/tls/optimise_amplitudes_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_tls_decompose_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_decompose_ext.so.0 mmtbx/tls/decompose_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_tls_decompose_ext.so.0.0.1' 'lib/mmtbx_tls_decompose_ext.so.0'->'lib/mmtbx_tls_decompose_ext.so.0.0.1' 'lib/mmtbx_tls_decompose_ext.so'->'lib/mmtbx_tls_decompose_ext.so.0.0.1' g++ -o mmtbx/tls/utils.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/tls/utils.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/tls/utils_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/tls/utils_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/utils/utils_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/utils/utils_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_optimise_amplitudes_ext.so.0 mmtbx/tls/optimise_amplitudes.o mmtbx/tls/optimise_amplitudes_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1' 'lib/mmtbx_tls_optimise_amplitudes_ext.so.0'->'lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1' 'lib/mmtbx_tls_optimise_amplitudes_ext.so'->'lib/mmtbx_tls_optimise_amplitudes_ext.so.0.0.1' g++ -o mmtbx/validation/ramachandran/rama_eval_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/validation/ramachandran/rama_eval_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_reduce_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_reduce_ext.so.0 mmtbx/reduce/boost_python/reduce_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Lreduce/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/reduce/lib -Lprobe/lib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/probe/lib -lreduce2lib -lprobelib -liotbx_pdb -lcctbx -lscitbx_boost_python -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o omptbx/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/omptbx/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_scaling_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_scaling_ext.so.0 mmtbx/scaling/scaling_ext.o mmtbx/scaling/twinning_bpl.o mmtbx/scaling/relative_scaling_bpl.o mmtbx/scaling/outlier_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o rstbx/array_family/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/array_family/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/array_family/flex_rstbx_arrays.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/array_family/flex_rstbx_arrays.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_scaling_ext.so.0.0.1' 'lib/mmtbx_scaling_ext.so.0'->'lib/mmtbx_scaling_ext.so.0.0.1' 'lib/mmtbx_scaling_ext.so'->'lib/mmtbx_scaling_ext.so.0.0.1' g++ -o rstbx/bandpass/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/bandpass/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/src -Irstbx/bandpass/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/mmtbx_reduce_ext.so.0.0.1' 'lib/mmtbx_reduce_ext.so.0'->'lib/mmtbx_reduce_ext.so.0.0.1' 'lib/mmtbx_reduce_ext.so'->'lib/mmtbx_reduce_ext.so.0.0.1' g++ -o rstbx/bpcx/detector_model/detector_model_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/bpcx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bpcx/src -Irstbx/bpcx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bpcx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bpcx/detector_model/detector_model_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/mmtbx_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_utils_ext.so.0 mmtbx/utils/utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/mmtbx_validation_ramachandran_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_validation_ramachandran_ext.so.0 mmtbx/validation/ramachandran/rama_eval_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_validation_ramachandran_ext.so.0.0.1' 'lib/mmtbx_validation_ramachandran_ext.so.0'->'lib/mmtbx_validation_ramachandran_ext.so.0.0.1' 'lib/mmtbx_validation_ramachandran_ext.so'->'lib/mmtbx_validation_ramachandran_ext.so.0.0.1' Create symlinks for: 'lib/mmtbx_utils_ext.so.0.0.1' 'lib/mmtbx_utils_ext.so.0'->'lib/mmtbx_utils_ext.so.0.0.1' 'lib/mmtbx_utils_ext.so'->'lib/mmtbx_utils_ext.so.0.0.1' g++ -o rstbx/bpcx/detector_model/sensor.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/bpcx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bpcx/src -Irstbx/bpcx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bpcx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bpcx/detector_model/sensor.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/diffraction/fastbragg/fastbragg_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/diffraction/fastbragg/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/src -Irstbx/diffraction/fastbragg/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/omptbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=omptbx_ext.so.0 omptbx/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lomptbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/omptbx_ext.so.0.0.1' 'lib/omptbx_ext.so.0'->'lib/omptbx_ext.so.0.0.1' 'lib/omptbx_ext.so'->'lib/omptbx_ext.so.0.0.1' g++ -o rstbx/diffraction/fastbragg/fastbragg.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/diffraction/fastbragg/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/src -Irstbx/diffraction/fastbragg/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o rstbx/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/src -Irstbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:10: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/parameters.h: In constructor ‘rstbx::bandpass::active_area_filter::active_area_filter(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/parameters.h:100:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 100 | for (int i=0; i < tiles.size()/4; ++i){ | ~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/parameters.h:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/parameters.h: In member function ‘bool rstbx::bandpass::active_area_filter::operator()(rstbx::bandpass::vec3, const int&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/parameters.h:126:39: warning: comparison of integer expressions of different signedness: ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 126 | SCITBX_ASSERT( adapt.nn.size()== NEAR); | ~~~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/parameters.h:126:9: note: in expansion of macro ‘SCITBX_ASSERT’ 126 | SCITBX_ASSERT( adapt.nn.size()== NEAR); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/subpixel_joint_model.h: In member function ‘void rstbx::bandpass::subpixel_joint_model::set_subpixel(scitbx::af::shared, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/subpixel_joint_model.h:26:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 26 | for (int ixx=0; ixx< rotations_deg.size(); ++ixx){ | ~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/subpixel_joint_model.h:31:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 31 | for (int ixx=0; ixx< rotations_deg.size(); ++ixx){ | ~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::prescreen_indices(const double&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:46:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | for (int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared rstbx::bandpass::use_case_bp3::selected_partialities() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:93:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::picture_fast_slow()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:152:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 152 | for (int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::picture_fast_slow_force()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:296:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 296 | for (int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:462:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 462 | for ( int idx = 0; idx < P.indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::spot_rectangles(rstbx::bandpass::vec3ref)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:477:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 477 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::spot_rectregions(rstbx::bandpass::vec3ref, const double&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:511:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 511 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::enclosed_pixels() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:543:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 543 | for (int idx = 0; idx < spot_rectangle_vertices.size(); idx+=5){ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_hi_predictions() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:752:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 752 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_lo_predictions() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:763:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 763 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_predictions() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:774:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 774 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_predictions_labelit_format() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:787:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 787 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::selected_hkls() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:802:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 802 | for (int idx = 0; idx < lo_E_limit.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘scitbx::af::shared > rstbx::bandpass::use_case_bp3::restricted_to_active_areas(scitbx::af::shared, scitbx::af::shared >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:815:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 815 | for (int idx = 0; idx < active_areas.size(); idx+=4){ | ~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In member function ‘void rstbx::bandpass::use_case_bp3::set_subpixel(scitbx::af::shared, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:828:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 828 | for (int ixx=0; ixx< rotations_deg.size(); ++ixx){ //DEPRECATED | ~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In function ‘scitbx::af::shared > rstbx::bandpass::ext::use_case_bp2_picture_fast_slow(scitbx::af::shared >, const cctbx::crystal_orientation&, const scitbx::vec3&, const double&, const scitbx::vec3&, const scitbx::vec3&, const scitbx::vec3&, const scitbx::vec3&, const scitbx::vec3&, const double&, const scitbx::vec3&, const double&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:933:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 933 | for (int idx = 0; idx < indices.size(); ++idx){ | ~~~~^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::versa > rstbx::diffraction::fastbragg::detector::intdata()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:89:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int count = 0; count < raw.size(); ++count){ | ~~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:8: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::shared rstbx::diffraction::fastbragg::camera::get_wavelengths() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:133:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 133 | SCITBX_ASSERT(result.size()==dispsteps); | ~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:133:5: note: in expansion of macro ‘SCITBX_ASSERT’ 133 | SCITBX_ASSERT(result.size()==dispsteps); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘std::map, double> rstbx::diffraction::fastbragg::crystal::get_amplitude_mapping() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:176:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 176 | for (int i = 0; i < miller.size(); ++i){ | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘void rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector(const bool&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:305:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 305 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In instantiation of ‘void rstbx::bandpass::use_case_bp3::enclosed_pixels_and_margin_pixels_detail() [with pixel_accept_policy = resolution_limited_pixel_accept_policy]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:616:87: required from here 616 | enclosed_pixels_and_margin_pixels_detail(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:631:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 631 | for (int idx = 0; idx < spot_rectangle_vertices.size(); idx+=5){ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp: In instantiation of ‘void rstbx::bandpass::use_case_bp3::enclosed_pixels_and_margin_pixels_detail() [with pixel_accept_policy = unlimited_pixel_accept_policy]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:620:78: required from here 620 | enclosed_pixels_and_margin_pixels_detail(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:631:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 631 | for (int idx = 0; idx < spot_rectangle_vertices.size(); idx+=5){ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o rstbx/indexing_api/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/indexing_api/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/src -Irstbx/indexing_api/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg_ext.cpp:10: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::versa > rstbx::diffraction::fastbragg::detector::intdata()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:89:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int count = 0; count < raw.size(); ++count){ | ~~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:8: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘scitbx::af::shared rstbx::diffraction::fastbragg::camera::get_wavelengths() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:133:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 133 | SCITBX_ASSERT(result.size()==dispsteps); | ~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:133:5: note: in expansion of macro ‘SCITBX_ASSERT’ 133 | SCITBX_ASSERT(result.size()==dispsteps); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘std::map, double> rstbx::diffraction::fastbragg::crystal::get_amplitude_mapping() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:176:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 176 | for (int i = 0; i < miller.size(); ++i){ | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In member function ‘void rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector(const bool&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:305:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 305 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In instantiation of ‘scitbx::af::shared rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector_get_indices(const bool&) [with IndexType = scitbx::vec3; MillerConversionPolicy = rstbx::diffraction::fastbragg::vec3_double_miller_index_policy]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg_ext.cpp:134:11: required from here 127 | class_("fast_bragg_simulation",init<>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | | 129 | .def("set_detector",&fast_bragg_simulation::set_detector) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("set_camera",&fast_bragg_simulation::set_camera) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("set_crystal",&fast_bragg_simulation::set_crystal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("sweep_over_detector",&fast_bragg_simulation::sweep_over_detector, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def("sweep_over_detector_float_indices",&fast_bragg_simulation::sweep_over_detector_get_indices< | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 | rstbx::diffraction::fastbragg::vec3, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 | rstbx::diffraction::fastbragg::vec3_double_miller_index_policy>, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:456:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 456 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:417:9: warning: variable ‘j_image_ptr’ set but not used [-Wunused-but-set-variable=] 417 | int j_image_ptr = 0; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:418:9: warning: variable ‘progress_pixel’ set but not used [-Wunused-but-set-variable=] 418 | int progress_pixel = 0; | ^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h: In instantiation of ‘scitbx::af::shared rstbx::diffraction::fastbragg::fast_bragg_simulation::sweep_over_detector_get_indices(const bool&) [with IndexType = cctbx::miller::index<>; MillerConversionPolicy = rstbx::diffraction::fastbragg::integer_miller_index_policy]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg_ext.cpp:138:11: required from here 127 | class_("fast_bragg_simulation",init<>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 | | 129 | .def("set_detector",&fast_bragg_simulation::set_detector) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 | .def("set_camera",&fast_bragg_simulation::set_camera) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 | .def("set_crystal",&fast_bragg_simulation::set_crystal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | .def("sweep_over_detector",&fast_bragg_simulation::sweep_over_detector, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ 134 | .def("sweep_over_detector_float_indices",&fast_bragg_simulation::sweep_over_detector_get_indices< | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 | rstbx::diffraction::fastbragg::vec3, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 | rstbx::diffraction::fastbragg::vec3_double_miller_index_policy>, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ 138 | .def("sweep_over_detector_integer_indices",&fast_bragg_simulation::sweep_over_detector_get_indices< | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 | rstbx::diffraction::fastbragg::miller_t, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 | rstbx::diffraction::fastbragg::integer_miller_index_policy>, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 | (arg_("verbose")=false)) | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:456:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 456 | for(int i_lambda=0; i_lambda < lambdas.size(); ++i_lambda){ | ~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:417:9: warning: variable ‘j_image_ptr’ set but not used [-Wunused-but-set-variable=] 417 | int j_image_ptr = 0; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/diffraction/fastbragg/fastbragg.h:418:9: warning: variable ‘progress_pixel’ set but not used [-Wunused-but-set-variable=] 418 | int progress_pixel = 0; | ^~~~~~~~~~~~~~ g++ -o lib/mmtbx_tls_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_ext.so.0 mmtbx/tls/tls_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_tls_ext.so.0.0.1' 'lib/mmtbx_tls_ext.so.0'->'lib/mmtbx_tls_ext.so.0.0.1' 'lib/mmtbx_tls_ext.so'->'lib/mmtbx_tls_ext.so.0.0.1' g++ -o rstbx/apps/integration_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/apps/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/src -Irstbx/apps/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/integration_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/rstbx_bpcx_detector_model_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_bpcx_detector_model_ext.so.0 rstbx/bpcx/detector_model/detector_model_ext.o rstbx/bpcx/detector_model/sensor.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_bpcx_detector_model_ext.so.0.0.1' 'lib/rstbx_bpcx_detector_model_ext.so.0'->'lib/rstbx_bpcx_detector_model_ext.so.0.0.1' 'lib/rstbx_bpcx_detector_model_ext.so'->'lib/rstbx_bpcx_detector_model_ext.so.0.0.1' g++ -o rstbx/simage/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/simage/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simage/src -Irstbx/simage/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simage/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simage/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/real_to_complex.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/dps_core/directional_fft.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/dps_core/dps_core.h:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/indexing_api.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/virtual_panel.h:28, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel_data.h:17, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:22, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/detector.h:26, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/indexing_api.h:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:551:18: warning: ‘scitbx::vec3 dxtbx::model::Beam::direction_’ [-Wreorder] 551 | vec3 direction_; | ^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:93:5: warning: when initialized here [-Wreorder] 93 | Beam() | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:126:5: warning: when initialized here [-Wreorder] 126 | Beam(vec3 direction, double wavelength) | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:165:5: warning: when initialized here [-Wreorder] 165 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:193:5: warning: when initialized here [-Wreorder] 193 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In constructor ‘dxtbx::model::Beam::Beam(scitbx::vec3, double, double, double, scitbx::vec3, double, double, double, dxtbx::model::Probe, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:562:12: warning: ‘dxtbx::model::Beam::wavelength_’ will be initialized after [-Wreorder] 562 | double wavelength_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:552:12: warning: ‘double dxtbx::model::Beam::divergence_’ [-Wreorder] 552 | double divergence_; | ^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:227:5: warning: when initialized here [-Wreorder] 227 | Beam(vec3 direction, | ^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h: In member function ‘virtual scitbx::af::shared > dxtbx::model::PolychromaticBeam::get_s0_at_scan_points() const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:52: warning: left operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/beam.h:760:60: warning: right operand of comma operator has no effect [-Wunused-value] 760 | return scitbx::af::shared >(1, (0., 0., 0.)); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:288:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 288 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:289:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 289 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:328:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 328 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:329:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 329 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_millimeter(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:408:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 408 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:409:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 409 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h: In member function ‘virtual scitbx::vec2 dxtbx::model::OffsetParallaxCorrectedPxMmStrategy::to_pixel(const dxtbx::model::PanelData&, scitbx::vec2) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:449:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 449 | if (i >= dx_.accessor()[1]) i = dx_.accessor()[1] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/pixel_to_millimeter.h:450:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare] 450 | if (j >= dx_.accessor()[0]) j = dx_.accessor()[0] - 1; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h: In member function ‘void dxtbx::model::Panel::apply_untrusted_rectangle_mask(scitbx::af::ref >) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:455:36: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 455 | for (std::size_t y = y0; y < y1; ++y) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src/dxtbx/model/panel.h:456:38: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 456 | for (std::size_t x = x0; x < x1; ++x) { | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp: In member function ‘void indexing_api::rayleigh_cpp::estimate_parameters_from_cdf(scitbx::af::shared, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp:59:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 59 | for (int i=0; i < x_data.size(); ++i){ | ~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::pdf(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp:80:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 80 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::cdf(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp:96:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 96 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::d_cdf_d_sigma(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp:113:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 113 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp: In member function ‘scitbx::af::shared indexing_api::rayleigh_cpp::gradients(scitbx::af::shared, const int&, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp:129:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 129 | for (int i = 0; i < x.size(); ++i){ | ~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/indexing_api/ext.cpp:135:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 135 | for (int i = 0; i < gradients.size(); ++i){ | ~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /usr/include/boost/python/scope.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/bandpass/ext.cpp:4: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/libdistl.h:81, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/distl.h:14, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/stills/simple_integration.h:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/integration_ext.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/detectors/scanbox.h: In member function ‘Distl::interval_list Distl::scanbox_tiling_explicit::generate_defined_x_tiles(const int&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/iotbx/detectors/scanbox.h:268:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 268 | for (int tile = 0 ; tile < tile_count; ++tile){ | ~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/stills/simple_integration.h: In member function ‘void rstbx::integration::simple_integration::append_ISmask(scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/stills/simple_integration.h:222:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 222 | for (int i=0; i < mask.size(); i+=2){ | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/stills/simple_integration.h: In member function ‘void rstbx::integration::simple_integration::positional_correction_mapping(scitbx::af::shared >, scitbx::af::shared >, const annlib_adaptbx::AnnAdaptor&, const annlib_adaptbx::AnnAdaptor&, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/stills/simple_integration.h:273:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 273 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 287 | for (int p=0; p >, scitbx::af::shared >, const annlib_adaptbx::AnnAdaptor&, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/stills/simple_integration.h:310:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 310 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 320 | for (int p=0; p > rstbx::integration::simple_integration::safe_background(const scitbx::af::flex_int&, scitbx::af::shared >, const annlib_adaptbx::AnnAdaptor&, scitbx::af::shared)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/stills/simple_integration.h:366:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 366 | for (int isort=0; isort >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 378 | for (int isort=0; isort >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 395 | for (int i=0; i >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 495 | for (int isort=0; isort >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 550 | for (int i=0; i >, scitbx::af::shared >, scitbx::af::shared >)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/apps/stills/simple_integration.h:575:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 575 | for (int i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 631 | for (int k=0; k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 638 | for (int k=0; k >&, const scitbx::af::const_ref&, const scitbx::mat3&, double, double, int, double, scitbx::vec2, scitbx::vec2, unsigned int, double)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simage/image_simple.hpp:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 144 | for(int i=0;i<=point_spread;i++) { | ~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simage/image_simple.hpp:148:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 148 | for(int j=0;j<=point_spread;j++) { | ~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simage/image_simple.hpp:10: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simage/ext.cpp: In function ‘std::string rstbx::simage::ext::combine_rgb_images(const boost::python::list&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simage/ext.cpp:58:42: warning: comparison of integer expressions of different signedness: ‘boost::python::ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 58 | TBXX_ASSERT(bp::len(rgb_images[j]) == img_size); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/tbxx/error_utils.hpp:59:9: note: in definition of macro ‘TBXX_ASSERT’ 59 | if (!(condition)) { \ | ^~~~~~~~~ g++ -o lib/rstbx_bandpass_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_bandpass_ext.so.0 rstbx/bandpass/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lann-cctbx -lann_adaptor -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_bandpass_ext.so.0.0.1' 'lib/rstbx_bandpass_ext.so.0'->'lib/rstbx_bandpass_ext.so.0.0.1' 'lib/rstbx_bandpass_ext.so'->'lib/rstbx_bandpass_ext.so.0.0.1' g++ -o rstbx/simulation/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/simulation/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/src -Irstbx/simulation/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/rstbx_diffraction_fastbragg_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_diffraction_fastbragg_ext.so.0 rstbx/diffraction/fastbragg/fastbragg_ext.o rstbx/diffraction/fastbragg/fastbragg.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_diffraction_fastbragg_ext.so.0.0.1' 'lib/rstbx_diffraction_fastbragg_ext.so.0'->'lib/rstbx_diffraction_fastbragg_ext.so.0.0.1' 'lib/rstbx_diffraction_fastbragg_ext.so'->'lib/rstbx_diffraction_fastbragg_ext.so.0.0.1' g++ -o rstbx/symmetry/constraints/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -Irstbx/symmetry/constraints/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/symmetry/constraints/src -Irstbx/symmetry/constraints/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/symmetry/constraints/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/symmetry/constraints/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/rstbx_indexing_api_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_indexing_api_ext.so.0 rstbx/indexing_api/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_indexing_api_ext.so.0.0.1' 'lib/rstbx_indexing_api_ext.so.0'->'lib/rstbx_indexing_api_ext.so.0.0.1' 'lib/rstbx_indexing_api_ext.so'->'lib/rstbx_indexing_api_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/rstbx_simage_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_simage_ext.so.0 rstbx/simage/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_simage_ext.so.0.0.1' 'lib/rstbx_simage_ext.so.0'->'lib/rstbx_simage_ext.so.0.0.1' 'lib/rstbx_simage_ext.so'->'lib/rstbx_simage_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_grid.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_grid.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/ext.cpp:11: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/sim_xfel1.h: In member function ‘scitbx::af::shared rstbx::xfel1::select_proximal_indices(const int&, const double&, const double&, const cctbx::crystal_orientation&, const double&, const double&, const double&, const double&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/sim_xfel1.h:113:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 113 | for (int x = 0; x < indices_all.size(); ++x){ | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/sim_xfel1.h: In member function ‘scitbx::af::versa > rstbx::xfel1::raw_diffraction(scitbx::af::shared, scitbx::af::versa >, const size_t&, const double&, const double&, const double&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/sim_xfel1.h:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare] 178 | for (int mcount=0; mcount::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 230 | for (int isel = 0; isel < selected.size(); ++isel){ | ~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/sim_xfel1.h:231:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 231 | for (int imos = 0; imos < mosaic_perturbations.size(); ++imos){ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o lib/mmtbx_tls_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=mmtbx_tls_utils_ext.so.0 mmtbx/tls/utils.o mmtbx/tls/utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lmmtbx_tls -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/rstbx_integration_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_integration_ext.so.0 rstbx/apps/integration_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lann-cctbx -lann_adaptor -lspotfinder -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/mmtbx_tls_utils_ext.so.0.0.1' 'lib/mmtbx_tls_utils_ext.so.0'->'lib/mmtbx_tls_utils_ext.so.0.0.1' 'lib/mmtbx_tls_utils_ext.so'->'lib/mmtbx_tls_utils_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_bool.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/rstbx_integration_ext.so.0.0.1' 'lib/rstbx_integration_ext.so.0'->'lib/rstbx_integration_ext.so.0.0.1' 'lib/rstbx_integration_ext.so'->'lib/rstbx_integration_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_size_t.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp: In member function ‘const char* scitbx::af::boost_python::cost_of_m_handle_in_af_shared::operator()(unsigned int, unsigned int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:368:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 368 | for(int n=0; n < n_repeats; ++n) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:376:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 376 | for(int n=0; n < n_repeats; ++n) { | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:384:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 384 | for(int n=0; n < n_repeats; ++n) { | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/selections.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:2: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/selections.h: In instantiation of ‘scitbx::af::shared scitbx::af::reindexing_array(std::size_t, const const_ref&) [with IntType = int; std::size_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:546:7: required from here 546 | reindexing_array, | ^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/selections.h:156:35: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 156 | SCITBX_ASSERT(iselection[i] < selectee_size); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/selections.h:156:7: note: in expansion of macro ‘SCITBX_ASSERT’ 156 | SCITBX_ASSERT(iselection[i] < selectee_size); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/c_grid_flex_conversions.h:10, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:10: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:85:46: required from here 85 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:86:45: required from here 86 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:87:36: required from here 87 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:88:36: required from here 88 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:89:36: required from here 89 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:90:36: required from here 90 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:91:37: required from here 91 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:92:39: required from here 92 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:93:39: required from here 93 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:94:39: required from here 94 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:95:39: required from here 95 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:96:39: required from here 96 | tuple_mapping_fixed_size(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 2>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:97:53: required from here 97 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 3>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:98:53: required from here 98 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 4>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:99:53: required from here 99 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:101:50: required from here 101 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:102:51: required from here 102 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:103:55: required from here 103 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:104:55: required from here 104 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:105:55: required from here 105 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:106:58: required from here 106 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:107:53: required from here 107 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:108:53: required from here 108 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:109:53: required from here 109 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:111:54: required from here 111 | tuple_mapping_fixed_capacity >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:113:46: required from here 113 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:114:46: required from here 114 | tuple_mapping_fixed_size >(); // scitbx/math/golay.h | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:116:49: required from here 116 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:118:50: required from here 118 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:119:50: required from here 119 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:120:50: required from here 120 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:121:50: required from here 121 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:123:53: required from here 123 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:124:53: required from here 124 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:125:53: required from here 125 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:128:51: required from here 128 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:129:52: required from here 129 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:130:42: required from here 130 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:131:42: required from here 131 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:132:45: required from here 132 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3 >]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:133:63: required from here 133 | tuple_mapping_fixed_size > >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:134:45: required from here 134 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::sym_mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::sym_mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::sym_mat3; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::sym_mat3]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:135:49: required from here 135 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:136:51: required from here 136 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:137:52: required from here 137 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:138:42: required from here 138 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:139:42: required from here 139 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:140:45: required from here 140 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:141:45: required from here 141 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::sym_mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::sym_mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::sym_mat2; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::sym_mat2]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:142:49: required from here 142 | tuple_mapping_fixed_size >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::vec3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::vec3 >]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:144:60: required from here 144 | tuple_mapping_fixed_size > >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::mat3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::mat3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::mat3 >; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::mat3 >]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:145:60: required from here 145 | tuple_mapping_fixed_size > >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 2>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:147:54: required from here 147 | tuple_mapping_fixed_size, 2> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 3>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:148:54: required from here 148 | tuple_mapping_fixed_size, 3> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 4>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:149:54: required from here 149 | tuple_mapping_fixed_size, 4> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 2>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:150:54: required from here 150 | tuple_mapping_fixed_size, 2> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 3>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:151:54: required from here 151 | tuple_mapping_fixed_size, 3> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::tiny, 4>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:280:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_size::tuple_mapping_fixed_size() [with ContainerType = scitbx::af::tiny, 4>]’ 280 | tuple_mapping< | ^~~~~~~~~~~~~~ 281 | ContainerType, | ~~~~~~~~~~~~~~ 282 | fixed_size_policy>(); | ~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:152:54: required from here 152 | tuple_mapping_fixed_size, 4> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:154:64: required from here 154 | tuple_mapping_fixed_capacity(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 3>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 3>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:155:56: required from here 155 | tuple_mapping_fixed_capacity, 3> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 2>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 2>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:156:56: required from here 156 | tuple_mapping_fixed_capacity, 2> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 6>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 6>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 6>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 6>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:157:59: required from here 157 | tuple_mapping_fixed_capacity, 6> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 7>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 7>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 7>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 7>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:158:59: required from here 158 | tuple_mapping_fixed_capacity, 7> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 8>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:159:59: required from here 159 | tuple_mapping_fixed_capacity, 8> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:270:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping::tuple_mapping() [with ContainerType = scitbx::af::small, 8>; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 270 | from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 271 | ContainerType, | ~~~~~~~~~~~~~~ 272 | ConversionPolicy>(); | ~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:290:7: required from ‘scitbx::boost_python::container_conversions::tuple_mapping_fixed_capacity::tuple_mapping_fixed_capacity() [with ContainerType = scitbx::af::small, 8>]’ 290 | tuple_mapping< | ^~~~~~~~~~~~~~ 291 | ContainerType, | ~~~~~~~~~~~~~~ 292 | fixed_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_ext.cpp:160:59: required from here 160 | tuple_mapping_fixed_capacity, 8> >(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o lib/rstbx_symmetry_constraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_symmetry_constraints_ext.so.0 rstbx/symmetry/constraints/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_symmetry_constraints_ext.so.0.0.1' 'lib/rstbx_symmetry_constraints_ext.so.0'->'lib/rstbx_symmetry_constraints_ext.so.0.0.1' 'lib/rstbx_symmetry_constraints_ext.so'->'lib/rstbx_symmetry_constraints_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_int.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:7, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/rstbx/simulation/sim_xfel1.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h: In function ‘void scitbx::af::shared_plain::resize(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:175:15: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 175 | resize(new_size, ElementType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:175:26: note: ‘’ declared here 175 | resize(new_size, ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h: In function ‘void scitbx::af::shared_plain::resize(const size_type&) [with ElementType = cctbx::crystal_orientation]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:175:15: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 175 | resize(new_size, ElementType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const cctbx::crystal_orientation&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = cctbx::crystal_orientation]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:175:26: note: ‘’ declared here 175 | resize(new_size, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = bool]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp:429:8: required from here 429 | def("first_index", f_w::first_index_a_s, (arg("value"))); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = bool]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594, from /usr/include/c++/16/string:52, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = bool]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp:430:8: required from here 430 | def("last_index", f_w::last_index_a_s, (arg("value"))); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = bool]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 131 | def( \ | ~~~^~~ 132 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = unsigned char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 131 | def( \ | ~~~^~~ 132 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = short unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 131 | def( \ | ~~~^~~ 132 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 131 | def( \ | ~~~^~~ 132 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 963 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594, from /usr/include/c++/16/string:52, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 964 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = long unsigned int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = bool]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = bool]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = bool]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = bool]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = bool; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_bool.cpp:367:15: required from here 367 | f_w::plain("bool") | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o lib/rstbx_simulation_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_simulation_ext.so.0 rstbx/simulation/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ Create symlinks for: 'lib/rstbx_simulation_ext.so.0.0.1' 'lib/rstbx_simulation_ext.so.0'->'lib/rstbx_simulation_ext.so.0.0.1' 'lib/rstbx_simulation_ext.so'->'lib/rstbx_simulation_ext.so.0.0.1' /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_float.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = unsigned char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = unsigned char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = short unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = short unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = long unsigned int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:140:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = unsigned char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = unsigned char]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:141:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = short unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = short unsigned int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:142:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o lib/rstbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_ext.so.0 rstbx/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = unsigned int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_size_t.cpp:143:3: required from here 105 | flex_wrapper::integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 311 | def( \ | ~~~^~~ 312 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = long int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 311 | def( \ | ~~~^~~ 312 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = signed char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 311 | def( \ | ~~~^~~ 312 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h: In instantiation of ‘scitbx::af::shared scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = short int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 311 | def( \ | ~~~^~~ 312 | #pyname"_from_byte_str", \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 | shared_from_byte_str, \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | (arg("byte_str"))); \ | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ Create symlinks for: 'lib/rstbx_ext.so.0.0.1' 'lib/rstbx_ext.so.0'->'lib/rstbx_ext.so.0.0.1' 'lib/rstbx_ext.so'->'lib/rstbx_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 963 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594, from /usr/include/c++/16/string:52, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 964 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = int]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ g++ -o scitbx/array_family/boost_python/flex_double_matrix.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = float]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 963 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594, from /usr/include/c++/16/string:52, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = float]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 964 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = float]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = long int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = long int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = signed char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = signed char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i > scitbx::af::copy_slice(const const_ref >&, small) [with T = short int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = short int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:319:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = long int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = long int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = long int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:320:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = float]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = float]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = signed char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = signed char]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = signed char; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:321:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = float]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = float]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = float; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_float.cpp:12:33: required from here 12 | flex_wrapper::numeric("float", boost::python::scope()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = short int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = short int]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1031:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1031 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1048:21: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::signed_integer(const std::string&, const boost::python::api::object&) [with ElementType = short int; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1048 | return integer(python_name, flex_root_scope); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_int.cpp:322:3: required from here 242 | flex_wrapper::signed_integer(#pyname, scope()) \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/norms.h: In instantiation of ‘FloatType scitbx::matrix::norm_1(const scitbx::af::const_ref >&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp:119:74: required from here 119 | double (*matrix_norm_1)(const_ref const &) = matrix::norm_1; | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/norms.h:16:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 16 | for (int i=0; i >&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp:177:11: required from here 145 | class_f_t | ~~~~~~~~~ 146 | .def("is_square_matrix", is_square_matrix) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 | .def("matrix_diagonal", | ~~~~~~~~~~~~~~~~~~~~~~~ 148 | (shared(*)( | ~~~~~~~~~~~~~~~~~~~ 149 | const_ref > const&)) matrix_diagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 | .def("matrix_upper_bidiagonal", matrix_upper_bidiagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 | .def("matrix_lower_bidiagonal", matrix_lower_bidiagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | .def("matrix_diagonal_set_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 | (void(*)( | ~~~~~~~~~ 154 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 | double const&)) matrix_diagonal_set_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 | arg("value")) | ~~~~~~~~~~~~~ 157 | .def("matrix_diagonal_set_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 | (void(*)( | ~~~~~~~~~ 159 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 | const_ref const&)) matrix_diagonal_set_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 | arg("diagonal")) | ~~~~~~~~~~~~~~~~ 162 | .def("matrix_diagonal_add_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 | (void(*)( | ~~~~~~~~~ 164 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 | double const&)) matrix_diagonal_add_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 | arg("value")) | ~~~~~~~~~~~~~ 167 | .def("matrix_diagonal_sum", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 | (double(*)( | ~~~~~~~~~~~ 169 | const_ref > const&)) matrix_diagonal_sum) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 | .def("matrix_trace", | ~~~~~~~~~~~~~~~~~~~~ 171 | (double(*)( | ~~~~~~~~~~~ 172 | const_ref > const&)) matrix_diagonal_sum) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 | .def("matrix_diagonal_product", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 | (double(*)( | ~~~~~~~~~~~ 175 | const_ref > const&)) matrix_diagonal_product) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 | .def("matrix_norm_1", matrix_norm_1) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | .def("matrix_norm_inf", matrix::norm_inf) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/norms.h:32:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 32 | for (int i=0; i >&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double_matrix.cpp:178:11: required from here 145 | class_f_t | ~~~~~~~~~ 146 | .def("is_square_matrix", is_square_matrix) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 | .def("matrix_diagonal", | ~~~~~~~~~~~~~~~~~~~~~~~ 148 | (shared(*)( | ~~~~~~~~~~~~~~~~~~~ 149 | const_ref > const&)) matrix_diagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 | .def("matrix_upper_bidiagonal", matrix_upper_bidiagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 | .def("matrix_lower_bidiagonal", matrix_lower_bidiagonal) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | .def("matrix_diagonal_set_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 | (void(*)( | ~~~~~~~~~ 154 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 | double const&)) matrix_diagonal_set_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 | arg("value")) | ~~~~~~~~~~~~~ 157 | .def("matrix_diagonal_set_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 | (void(*)( | ~~~~~~~~~ 159 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 | const_ref const&)) matrix_diagonal_set_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 | arg("diagonal")) | ~~~~~~~~~~~~~~~~ 162 | .def("matrix_diagonal_add_in_place", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 | (void(*)( | ~~~~~~~~~ 164 | ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 | double const&)) matrix_diagonal_add_in_place, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 | arg("value")) | ~~~~~~~~~~~~~ 167 | .def("matrix_diagonal_sum", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 | (double(*)( | ~~~~~~~~~~~ 169 | const_ref > const&)) matrix_diagonal_sum) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 | .def("matrix_trace", | ~~~~~~~~~~~~~~~~~~~~ 171 | (double(*)( | ~~~~~~~~~~~ 172 | const_ref > const&)) matrix_diagonal_sum) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 | .def("matrix_diagonal_product", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 | (double(*)( | ~~~~~~~~~~~ 175 | const_ref > const&)) matrix_diagonal_product) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 | .def("matrix_norm_1", matrix_norm_1) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 | .def("matrix_norm_inf", matrix::norm_inf) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | .def("matrix_norm_frobenius", matrix::norm_frobenius) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/norms.h:46:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | for (int k=0; k < a_ij.size(); ++k) norm_accu(a_ij[k]); | ~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp: In function ‘scitbx::af::flex::type* scitbx::af::{anonymous}::from_list_or_tuple_of_lists_or_tuples(PyObject*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:138:38: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 138 | if (PyList_GET_SIZE(row) != n_columns) { | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:154:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 154 | if (PyTuple_GET_SIZE(row) != n_columns) { | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:190:38: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 190 | if (PyList_GET_SIZE(row) != n_columns) { | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:206:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘long int’} and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 206 | if (PyTuple_GET_SIZE(row) != n_columns) { | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp: In function ‘std::string scitbx::af::{anonymous}::mathematica_form(const scitbx::af::const_ref >&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:452:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 452 | for (int i=1; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 454 | if (i != indices.size() - 1) o << ","; | ~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/norms.h: In instantiation of ‘FloatType scitbx::matrix::norm_1(const scitbx::af::const_ref&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:365:26: required from here 365 | return matrix::norm_1(self); | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/norms.h:25:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 25 | for (int i=0; i scitbx::af::boost_python::shared_from_byte_str(const boost::python::api::object&) [with ElementType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:536:8: required from here 536 | def( | ~~~^ 537 | "double_from_byte_str", | ~~~~~~~~~~~~~~~~~~~~~~~ 538 | shared_from_byte_str, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 | (arg("byte_str"))); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:59: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘boost::python::ssize_t’ {aka ‘long int’} [-Wsign-compare] 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/byte_str.h:88:5: note: in expansion of macro ‘SCITBX_ASSERT’ 88 | SCITBX_ASSERT(shared_array_size * sizeof(ElementType) == len_byte_str); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:963:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 963 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594, from /usr/include/c++/16/string:52, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >; e_t = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:964:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 964 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = double]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = double]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:966:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_no_pow(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 966 | return numeric_common(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:1020:28: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric(const std::string&, const boost::python::api::object&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_ >, scitbx::af::boost_python::flex_wrapper, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 1020 | return numeric_no_pow(python_name, flex_root_scope) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_double.cpp:477:42: required from here 477 | f_w::class_f_t class_f_t(f_w::numeric("double", scope())); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o lib/rstbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=rstbx_array_family_flex_ext.so.0 rstbx/array_family/ext.o rstbx/array_family/flex_rstbx_arrays.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lrstbx -lann-cctbx -lcctbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/rstbx_array_family_flex_ext.so.0.0.1' 'lib/rstbx_array_family_flex_ext.so.0'->'lib/rstbx_array_family_flex_ext.so.0.0.1' 'lib/rstbx_array_family_flex_ext.so'->'lib/rstbx_array_family_flex_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/flex_complex_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = std::complex]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = std::complex]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = std::complex]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = std::complex]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:910:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::numeric_common(const std::string&, const boost::python::api::object&) [with ElementType = std::complex; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 910 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_complex_double.cpp:117:24: required from here 117 | f_w::numeric_common("complex_double", local_scope) | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/flex_std_string.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_random.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_random.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h: In function ‘scitbx::af::shared > scitbx::misc::split_lines(const char*, std::size_t, bool, bool)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:24:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 24 | while (i < size) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:25:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 25 | while (i < size && data[i] != '\n' && data[i] != '\r') i++; | ~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:27:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 27 | if (i < size) { | ~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:28:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 28 | if (data[i] == '\r' && i+1 < size && data[i+1] == '\n') { | ~~~~^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/misc/split_lines.h:46:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 46 | if (j < size) { | ~~^~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::first_index_a_s(const f_t&, e_t) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >; e_t = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:885:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 885 | def("first_index", first_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:616:41: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to<__cxx11::basic_string >; _Tp = __cxx11::basic_string]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 616 | return first_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/bits/stl_function.h:1594, from /usr/include/c++/16/string:52, from /usr/include/boost/core/demangle.hpp:14, from /usr/include/boost/core/typeinfo.hpp:135, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h: In instantiation of ‘static boost::optional scitbx::af::boost_python::flex_wrapper::last_index_a_s(const f_t&, e_t) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >; e_t = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:886:12: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 886 | def("last_index", last_index_a_s); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:621:40: warning: ‘std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to<__cxx11::basic_string >; _Tp = __cxx11::basic_string]’ is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 621 | return last_index(a, std::bind2nd(std::equal_to(), x)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = std::__cxx11::basic_string]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:888:19: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::ordered(const std::string&, const boost::python::api::object&) [with ElementType = std::__cxx11::basic_string; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 888 | return plain(python_name) | ~~~~~^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_std_string.cpp:137:16: required from here 137 | fw::ordered("std_string", scope()) | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; g++ -o scitbx/array_family/boost_python/flex_sort.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_sort.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_histogram.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_histogram.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_weighted_histogram.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_weighted_histogram.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_mean_and_variance.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_mean_and_variance.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_median.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_median.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_linear_interpolation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_linear_interpolation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_median.cpp:2: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/basic_statistics.h: In instantiation of ‘scitbx::math::median_statistics scitbx::math::median_functor::dispersion(const scitbx::af::ref&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_median.cpp:31:26: required from ‘static scitbx::math::median_statistics scitbx::af::boost_python::median_functor_wrapper::dispersion(wt&, const scitbx::af::const_ref&) [with FloatType = double; wt = scitbx::math::median_functor]’ 31 | return O.dispersion(af::make_ref(buffer)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_median.cpp:40:13: required from ‘static void scitbx::af::boost_python::median_functor_wrapper::wrap(const char*) [with FloatType = double]’ 36 | class_(name, no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | .def(init<>()) | ~~~~~~~~~~~~~~ 38 | .def(init(arg("seed"))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | .def("__call__", call, arg("data")) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | .def("dispersion", dispersion, arg("data")) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_median.cpp:63:41: required from here 63 | median_functor_wrapper::wrap("median_functor"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/basic_statistics.h:210:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 210 | for (int i=0; i < data.size(); ++i) { | ~~^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/flex_vec3_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_vec2_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_vec3_int.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_sym_mat3_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/flex_mat3_double.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec3]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_double.cpp:567:15: required from here 567 | f_w::plain("vec3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp: In function ‘scitbx::af::flex >::type* scitbx::af::{anonymous}::array_indices_as_double_from_array_focus_dimensions(const scitbx::vec2&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:128:26: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 128 | for(std::size_t i=0;i::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::vec2]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::vec2]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::vec2]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec2]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec2; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec2_double.cpp:440:15: required from here 440 | f_w::plain("vec2_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘void scitbx::af::detail::copy_to_slice_detail(scitbx::af::versa >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::vec3]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::vec3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_vec3_int.cpp:117:15: required from here 117 | f_w::plain("vec3_int") | ~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::sym_mat3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::sym_mat3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::sym_mat3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::sym_mat3]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::sym_mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp:124:15: required from here 124 | f_w::plain("sym_mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h: In member function ‘void scitbx::af::boost_python::detail::getstate_manager::advance(char*)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:43: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_pickle_single_buffered.h:43:9: note: in expansion of macro ‘SCITBX_ASSERT’ 43 | SCITBX_ASSERT(str_end - str_begin <= str_capacity); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = scitbx::mat3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = scitbx::mat3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::mat3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = scitbx::mat3]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_mat3_double.cpp:180:15: required from here 180 | f_w::plain("mat3_double") | ~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared_plain >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:769:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 769 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 770 | shared_plain, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:773:52: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 773 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 774 | shared, | ~~~~~~~~~~~~~~~~~~~~ 775 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:18: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h: In instantiation of ‘scitbx::af::versa > scitbx::af::copy_slice(const const_ref >&, small) [with T = tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:202:29: required from ‘static scitbx::af::versa > scitbx::af::boost_python::flex_wrapper::getitem_nd_slice(const scitbx::af::const_ref >&, const scitbx::af::small&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 202 | return copy_slice(self, slices_simple); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:228:54: required from ‘static boost::python::api::object scitbx::af::boost_python::flex_wrapper::getitem_tuple(boost::python::api::object&, boost::python::api::object) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 228 | return boost::python::object(getitem_nd_slice(a.const_ref(), slices)); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:806:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:89:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 89 | for (int i=0;i >&, small, const const_ref >&) [with T = tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:114:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 114 | for (int i=0;i >&, scitbx::af::small, const scitbx::af::const_ref >&) [with T = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:119:35: required from ‘void scitbx::af::copy_to_slice(versa >&, small, const const_ref >&) [with T = tiny]’ 119 | detail::copy_to_slice_detail(self, slices, other); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:269:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_nd_slice(f_t&, const scitbx::af::small&, const f_t&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; f_t = scitbx::af::versa, scitbx::af::flex_grid<> >]’ 269 | copy_to_slice(self, slices_simple, other.const_ref()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:289:25: required from ‘static void scitbx::af::boost_python::flex_wrapper::setitem_tuple(boost::python::api::object&, boost::python::api::object, boost::python::api::object&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy]’ 289 | setitem_nd_slice(a, slices, b); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:810:13: required from ‘static scitbx::af::boost_python::flex_wrapper::class_f_t scitbx::af::boost_python::flex_wrapper::plain(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; class_f_t = boost::python::class_, scitbx::af::flex_grid<> >, scitbx::af::boost_python::flex_wrapper >, boost::python::detail::not_specified, boost::python::detail::not_specified>; std::string = std::__cxx11::basic_string]’ 782 | result | ~~~~~~ 783 | .def(init const&, optional >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 | .def(init >()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 | .def(init const&>()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 | .def("element_size", element_size) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 | .staticmethod("element_size") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 | .def("accessor", accessor) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 | .def("nd", nd) | ~~~~~~~~~~~~~~ 790 | .def("is_0_based", is_0_based) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 | .def("origin", origin) | ~~~~~~~~~~~~~~~~~~~~~~ 792 | .def("all", all) | ~~~~~~~~~~~~~~~~ 793 | .def("last", last_0) | ~~~~~~~~~~~~~~~~~~~~ 794 | .def("last", last_1) | ~~~~~~~~~~~~~~~~~~~~ 795 | .def("is_padded", is_padded) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 | .def("focus", focus_0) | ~~~~~~~~~~~~~~~~~~~~~~ 797 | .def("focus", focus_1) | ~~~~~~~~~~~~~~~~~~~~~~ 798 | .def("focus_size_1d", focus_size_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 | .def("is_trivial_1d", is_trivial_1d) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 | .def("shift_origin", shift_origin) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 | .def("id", id) | ~~~~~~~~~~~~~~ 802 | .def("size", size) | ~~~~~~~~~~~~~~~~~~ 803 | .def("__len__", size) | ~~~~~~~~~~~~~~~~~~~~~ 804 | .def("__sizeof__", memory_footprint) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 | .def("capacity", capacity) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 | .def("__getitem__", getitem_tuple) // must be before other __getitem__ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 | .def("__getitem__", getitem_1d_slice) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 808 | .def("__getitem__", getitem_1d, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 | .def("__getitem_fgdit__", getitem_fgdit, GetitemReturnValuePolicy()) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 | .def("__setitem__", setitem_tuple) // must be before other __setitem__ | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp:32:47: required from here 32 | flex_wrapper >::plain("tiny_size_t_2") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/slice.h:70:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | if (idx_a[j] < slices[j].stop) break; In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::vec3; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::sym_mat3; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::sym_mat3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::sym_mat3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::sym_mat3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::sym_mat3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::sym_mat3*; _Size = long unsigned int; _Tp = scitbx::sym_mat3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::af::tiny; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::af::tiny]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::af::tiny*; _Size = long unsigned int; _Tp = scitbx::af::tiny]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::mat3; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::mat3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::mat3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::mat3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::mat3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::mat3*; _Size = long unsigned int; _Tp = scitbx::mat3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::vec3; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec3]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/flex_types.h:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h: In member function ‘void scitbx::af::versa_plain::resize(const AccessorType&) [with ElementType = scitbx::vec2; AccessorType = scitbx::af::flex_grid<>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:27: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::vec2&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::vec2]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:168:50: note: ‘’ declared here 168 | base_class::resize(m_accessor.size_1d(), ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec2]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/function/function_base.hpp:23, from /usr/include/boost/function/function_template.hpp:14, from /usr/include/boost/function/function0.hpp:10, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/to_python_value.hpp:14, from /usr/include/boost/python/default_call_policies.hpp:10, from /usr/include/boost/python/make_function.hpp:10, from /usr/include/boost/python/def.hpp:11, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/flex_wrapper.h:6: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::vec2&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec2*; _Size = long unsigned int; _Tp = scitbx::vec2]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ g++ -o scitbx/array_family/boost_python/loops.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/loops.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/show_sizes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/show_sizes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/numpy_bridge.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -DSCITBX_HAVE_NUMPY_INCLUDE -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/usr/lib/loongarch64-linux-gnu/python3-numpy/numpy/_core/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/shared_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = bool]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:204:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = bool]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:204:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:205:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:205:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = long int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:206:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = long int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:206:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = float]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:207:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = float]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:207:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:208:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:208:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = std::complex]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:209:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = std::complex]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:209:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = signed char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:210:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = signed char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:210:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = short int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:211:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = short int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:211:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = unsigned char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:216:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = unsigned char]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:216:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = short unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:217:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = short unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:217:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:218:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:218:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp: In instantiation of ‘boost::python::api::object scitbx::af::boost_python::ref_flex_as_numpy_array(const scitbx::af::ref >&, bool, int) [with ElementType = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:226:3: required from here 193 | return ref_flex_as_numpy_array(O, optional, type_num); \ | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:88:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 88 | for(unsigned i=0;i > scitbx::af::boost_python::versa_flex_from_numpy_array(const boost::python::numpy::ndarray&) [with ElementType = long unsigned int]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:226:3: required from here 201 | versa_flex_from_numpy_array(arr_obj)); \ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:24: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘long int’} and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 134 | SCITBX_ASSERT(ndim <= all.capacity()); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:134:5: note: in expansion of macro ‘SCITBX_ASSERT’ 134 | SCITBX_ASSERT(ndim <= all.capacity()); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:34: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘npy_intp’ {aka ‘long int’} [-Wsign-compare] 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/numpy_bridge.cpp:140:5: note: in expansion of macro ‘SCITBX_ASSERT’ 140 | SCITBX_ASSERT(grid.size_1d() == PyArray_Size(obj_ptr)); | ^~~~~~~~~~~~~ g++ -o scitbx/cubicle_neighbors_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/optional/detail/union_optional.hpp:20, from /usr/include/boost/optional/optional.hpp:52, from /usr/include/boost/optional.hpp:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref_reductions.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:31, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:12, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::vector; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp:40:53: required from here 40 | shared_wrapper, rir>::wrap("stl_vector_unsigned"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::vector; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp:41:51: required from here 41 | shared_wrapper, rir>::wrap("stl_vector_double"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = std::set; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp:42:50: required from here 42 | shared_wrapper, rir>::wrap("stl_set_unsigned") | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::mat3; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp:48:37: required from here 48 | shared_wrapper >::wrap("mat3_int"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp:49:40: required from here 49 | shared_wrapper >::wrap("tiny_int_3"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp:50:40: required from here 50 | shared_wrapper >::wrap("tiny_int_4"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::shared >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_wrapper.h:130:52: required from ‘static boost::python::class_ > scitbx::af::boost_python::shared_wrapper::wrap(const std::string&) [with ElementType = scitbx::af::tiny; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 130 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 131 | w_t, | ~~~~ 132 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/shared_ext.cpp:51:40: required from here 51 | shared_wrapper >::wrap("tiny_int_2"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o scitbx/fftpack/boost_python/fftpack_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/boost_python/fftpack_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/glmtbx/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/glmtbx/boost_python/ext.cc cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/graphics_utils/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/graphics_utils/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors_ext.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors.hpp: In instantiation of ‘std::map > scitbx::cubicle_neighbors::neighbors_of(const scitbx::af::const_ref >&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors_ext.cpp:23:36: required from here 23 | .def("neighbors_of", &w_t::neighbors_of, ( | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors.hpp:61:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 61 | if (i_cub[0] < 0 || i_cub[0] >= n_cubicles[0]) continue; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors.hpp:63:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 63 | if (i_cub[1] < 0 || i_cub[1] >= n_cubicles[1]) continue; /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors.hpp:65:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 65 | if (i_cub[2] < 0 || i_cub[2] >= n_cubicles[2]) continue; In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors.hpp:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicles.h: In instantiation of ‘scitbx::vec3 scitbx::cubicles::i_cubicle(const SiteType&) const [with SiteType = scitbx::vec3; CubicleContentType = std::vector::cubicle_site, std::allocator::cubicle_site> >; FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors.hpp:43:30: required from ‘scitbx::cubicle_neighbors::cubicle_neighbors(const scitbx::af::const_ref >&, const FloatType&, const FloatType&) [with FloatType = double]’ 43 | cubicles_.i_cubicle(main_sites_cart[i_seq])); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2) [with A0 = boost::python::objects::reference_to_value >&>; A1 = boost::python::objects::reference_to_value; A2 = boost::python::objects::reference_to_value; Value = scitbx::cubicle_neighbors<>; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<3>::apply::execute(PyObject*, t0, t1, t2) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector3 >&, const double&, const double&>; PyObject = _object; t0 = const scitbx::af::const_ref >&; t1 = const double&; t2 = const double&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector3 >&, const double&, const double&>; Arity = boost::mpl::size >&, const double&, const double&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector3 >&, const double&, const double&>; NArgs = boost::mpl::size >&, const double&, const double&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_ >; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector3 >&, const double&, const double&>; NArgs = boost::mpl::size >&, const double&, const double&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_ >; DerivedT = boost::python::init >&, const double&, const double&>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const double&, const double&> >; classT = boost::python::class_ >]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_ >; DerivedVisitor = boost::python::init >&, const double&, const double&>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const double&, const double&>; W = scitbx::cubicle_neighbors<>; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_ >]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicle_neighbors_ext.cpp:16:13: required from here 15 | class_("cubicle_neighbors", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 16 | .def(init< | ~~~~^~~~~~ 17 | af::const_ref > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 18 | double const&, | ~~~~~~~~~~~~~~ 19 | double const&>(( | ~~~~~~~~~~~~~~~~ 20 | arg("main_sites_cart"), | ~~~~~~~~~~~~~~~~~~~~~~~ 21 | arg("cubicle_edge"), | ~~~~~~~~~~~~~~~~~~~~ 22 | arg("epsilon")=1.e-6))) | ~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/cubicles.h:176:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 176 | else if (j >= ref.accessor()[i]) j = ref.accessor()[i]-1; | ~~^~~~~~~~~~~~~~~~~~ g++ -o scitbx/iso_surface/iso_surface_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/iso_surface/iso_surface_ext.cpp In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/gridding.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/boost_python/fftpack_ext.cpp:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lbfgs/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DSCITBX_LBFGS_HAVE_LBFGS_FEM -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgs/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_cubicle_neighbors_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_cubicle_neighbors_ext.so.0 scitbx/cubicle_neighbors_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_cubicle_neighbors_ext.so.0.0.1' 'lib/scitbx_cubicle_neighbors_ext.so.0'->'lib/scitbx_cubicle_neighbors_ext.so.0.0.1' 'lib/scitbx_cubicle_neighbors_ext.so'->'lib/scitbx_cubicle_neighbors_ext.so.0.0.1' g++ -o scitbx/lbfgs/lbfgs_fem.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable scitbx/lbfgs/lbfgs_fem.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/io.hpp:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/close_chain.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem.hpp:10, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/scitbx/lbfgs_fem.hpp:1, from scitbx/lbfgs/lbfgs_fem.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp: In member function ‘void fem::common::getarg(int, fem::str_ref) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp:40:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/variant.hpp:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:8: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ g++ -o lib/scitbx_iso_surface_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_iso_surface_ext.so.0 scitbx/iso_surface/iso_surface_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_iso_surface_ext.so.0.0.1' 'lib/scitbx_iso_surface_ext.so.0'->'lib/scitbx_iso_surface_ext.so.0.0.1' 'lib/scitbx_iso_surface_ext.so'->'lib/scitbx_iso_surface_ext.so.0.0.1' g++ -o scitbx/lbfgsb/boost_python/lbfgsb_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/linalg/boost_python/linalg_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/linalg_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/linalg/boost_python/matrix.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/matrix.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_graphics_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_graphics_utils_ext.so.0 scitbx/graphics_utils/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_graphics_utils_ext.so.0.0.1' 'lib/scitbx_graphics_utils_ext.so.0'->'lib/scitbx_graphics_utils_ext.so.0.0.1' 'lib/scitbx_graphics_utils_ext.so'->'lib/scitbx_graphics_utils_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/cholesky.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/cholesky.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_glmtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_glmtbx_ext.so.0 scitbx/glmtbx/boost_python/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_glmtbx_ext.so.0.0.1' 'lib/scitbx_glmtbx_ext.so.0'->'lib/scitbx_glmtbx_ext.so.0.0.1' 'lib/scitbx_glmtbx_ext.so'->'lib/scitbx_glmtbx_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/householder.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/householder.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/serialization/base_256.h:2, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/floating_point_epsilon.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:142:22: required from ‘bool scitbx::lbfgsb::minimizer::process(const scitbx::af::ref&, const FloatType&, const scitbx::af::ref&, bool) [with FloatType = double]’ 142 | raw::setulb( | ~~~~~~~~~~~^ 143 | n_, | ~~~ 144 | m_, | ~~~ 145 | raw::ref1(x), | ~~~~~~~~~~~~~~~~~~~~~~~~ 146 | raw::ref1(l_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 | raw::ref1(u_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 | raw::ref1(nbd_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 | f_, | ~~~ 150 | raw::ref1(g), | ~~~~~~~~~~~~~~~~~~~~~~~~ 151 | factr_, | ~~~~~~~ 152 | pgtol_, | ~~~~~~~ 153 | raw::ref1(wa_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 | raw::ref1(iwa_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 | task_, | ~~~~~~ 156 | iprint_, | ~~~~~~~~ 157 | csave_, | ~~~~~~~ 158 | raw::ref1(lsave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 | raw::ref1(isave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 | raw::ref1(dsave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 | enable_stp_init_); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:29:25: required from ‘static void scitbx::lbfgsb::{anonymous}::minimizer_wrappers::wrap() [with FloatType = double]’ 29 | .def("process", &w_t::process, ( | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:37: required from here 112 | minimizer_wrappers::wrap(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::write_ref1(const std::string&, const ref1&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:974:19: required from ‘void scitbx::lbfgsb::raw::prn3lb(const int&, const ref1&, const FloatType&, const std::string&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const FloatType&, const FloatType&, const int&, const std::string&, const int&, const FloatType&, const FloatType&, const int&, const FloatType&, const FloatType&, const FloatType&) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 974 | write_ref1(" X =", x); | ~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3786:15: required from ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 3786 | prn3lb(n,x,f,task,iprint,info,itfile, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3787 | iter,nfgv,nintol,nskip,nact,sbgnrm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3788 | zero,nint,word,iback,stp,xstep,k, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3789 | cachyt,sbtime,lnscht); | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:142:22: required from ‘bool scitbx::lbfgsb::minimizer::process(const scitbx::af::ref&, const FloatType&, const scitbx::af::ref&, bool) [with FloatType = double]’ 142 | raw::setulb( | ~~~~~~~~~~~^ 143 | n_, | ~~~ 144 | m_, | ~~~ 145 | raw::ref1(x), | ~~~~~~~~~~~~~~~~~~~~~~~~ 146 | raw::ref1(l_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 | raw::ref1(u_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 | raw::ref1(nbd_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 | f_, | ~~~ 150 | raw::ref1(g), | ~~~~~~~~~~~~~~~~~~~~~~~~ 151 | factr_, | ~~~~~~~ 152 | pgtol_, | ~~~~~~~ 153 | raw::ref1(wa_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 | raw::ref1(iwa_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 | task_, | ~~~~~~ 156 | iprint_, | ~~~~~~~~ 157 | csave_, | ~~~~~~~ 158 | raw::ref1(lsave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 | raw::ref1(isave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 | raw::ref1(dsave_.ref()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 | enable_stp_init_); | ~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:29:25: required from ‘static void scitbx::lbfgsb::{anonymous}::minimizer_wrappers::wrap() [with FloatType = double]’ 29 | .def("process", &w_t::process, ( | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:37: required from here 112 | minimizer_wrappers::wrap(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j::minimizer(const int&, const int&, scitbx::af::shared, scitbx::af::shared, scitbx::af::shared, bool, const FloatType&, const FloatType&, const int&) [with FloatType = double]’: /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5, A6, A7, A8) [with A0 = boost::python::objects::reference_to_value; A1 = boost::python::objects::reference_to_value; A2 = boost::python::objects::reference_to_value >; A3 = boost::python::objects::reference_to_value >; A4 = boost::python::objects::reference_to_value >; A5 = bool; A6 = boost::python::objects::reference_to_value; A7 = boost::python::objects::reference_to_value; A8 = boost::python::objects::reference_to_value; Value = scitbx::lbfgsb::minimizer; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<9>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5, t6, t7, t8) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; PyObject = _object; t0 = const int&; t1 = const int&; t2 = scitbx::af::shared; t3 = scitbx::af::shared; t4 = scitbx::af::shared; t5 = bool; t6 = const double&; t7 = const double&; t8 = const int&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; Arity = boost::mpl::size, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&> >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_, not_specified, not_specified, not_specified>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; NArgs = boost::mpl::size, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&> >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:377:31: required from ‘static void boost::python::detail::define_class_init_helper<0>::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, const boost::python::detail::keyword_range&) [with ClassT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::vector9, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&>; NArgs = boost::mpl::size, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&> >; boost::python::detail::keyword_range = std::pair]’ 377 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedT = boost::python::init, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >; classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>; DerivedVisitor = boost::python::init, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init, scitbx::af::shared, scitbx::af::shared, bool, const double&, const double&, const int&, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_>; W = scitbx::lbfgsb::minimizer; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:20:13: required from ‘static void scitbx::lbfgsb::{anonymous}::minimizer_wrappers::wrap() [with FloatType = double]’ 19 | class_("minimizer", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 20 | .def(init, | ~~~~~~~~~~~~~~~~~~~~~~ 23 | af::shared, | ~~~~~~~~~~~~~~~~~~~~~~ 24 | af::shared, | ~~~~~~~~~~~~~~~~ 25 | bool, | ~~~~~ 26 | FloatType const&, | ~~~~~~~~~~~~~~~~~ 27 | FloatType const&, | ~~~~~~~~~~~~~~~~~ 28 | int const&>()) | ~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:37: required from here 112 | minimizer_wrappers::wrap(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:118:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 118 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:118:9: note: in expansion of macro ‘SCITBX_ASSERT’ 118 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:119:32: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 119 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:119:9: note: in expansion of macro ‘SCITBX_ASSERT’ 119 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:120:34: warning: comparison of integer expressions of different signedness: ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 120 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb.h:120:9: note: in expansion of macro ‘SCITBX_ASSERT’ 120 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/linalg/boost_python/svd.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/svd.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_fftpack_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_fftpack_ext.so.0 scitbx/fftpack/boost_python/fftpack_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_fftpack_ext.so.0.0.1' 'lib/scitbx_fftpack_ext.so.0'->'lib/scitbx_fftpack_ext.so.0.0.1' 'lib/scitbx_fftpack_ext.so'->'lib/scitbx_fftpack_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/eigensystem.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/eigensystem.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_lbfgsb_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_lbfgsb_ext.so.0 scitbx/lbfgsb/boost_python/lbfgsb_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm -lboost_timer Create symlinks for: 'lib/scitbx_lbfgsb_ext.so.0.0.1' 'lib/scitbx_lbfgsb_ext.so.0'->'lib/scitbx_lbfgsb_ext.so.0.0.1' 'lib/scitbx_lbfgsb_ext.so'->'lib/scitbx_lbfgsb_ext.so.0.0.1' g++ -o scitbx/linalg/boost_python/lapack_fem_bpl.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lstbx/boost_python/lstbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lstbx/boost_python/lstbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lstbx/boost_python/normal_equations.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lstbx/boost_python/normal_equations.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_array_family_flex_ext.so.0 scitbx/array_family/boost_python/flex_ext.o scitbx/array_family/boost_python/flex_grid.o scitbx/array_family/boost_python/flex_bool.o scitbx/array_family/boost_python/flex_size_t.o scitbx/array_family/boost_python/flex_int.o scitbx/array_family/boost_python/flex_float.o scitbx/array_family/boost_python/flex_double.o scitbx/array_family/boost_python/flex_double_matrix.o scitbx/array_family/boost_python/flex_complex_double.o scitbx/array_family/boost_python/flex_std_string.o scitbx/array_family/boost_python/flex_random.o scitbx/array_family/boost_python/flex_sort.o scitbx/array_family/boost_python/flex_histogram.o scitbx/array_family/boost_python/flex_weighted_histogram.o scitbx/array_family/boost_python/flex_mean_and_variance.o scitbx/array_family/boost_python/flex_median.o scitbx/array_family/boost_python/flex_linear_interpolation.o scitbx/array_family/boost_python/flex_vec3_double.o scitbx/array_family/boost_python/flex_vec2_double.o scitbx/array_family/boost_python/flex_vec3_int.o scitbx/array_family/boost_python/flex_sym_mat3_double.o scitbx/array_family/boost_python/flex_mat3_double.o scitbx/array_family/boost_python/flex_tiny_size_t_2.o scitbx/array_family/boost_python/loops.o scitbx/array_family/boost_python/show_sizes.o scitbx/array_family/boost_python/numpy_bridge.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm -lboost_numpy314 g++ -o lib/scitbx_lbfgs_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_lbfgs_ext.so.0 scitbx/lbfgs/ext.o scitbx/lbfgs/lbfgs_fem.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_lbfgs_ext.so.0.0.1' 'lib/scitbx_lbfgs_ext.so.0'->'lib/scitbx_lbfgs_ext.so.0.0.1' 'lib/scitbx_lbfgs_ext.so'->'lib/scitbx_lbfgs_ext.so.0.0.1' g++ -o scitbx/math/boost_python/math_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/math_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/basic_statistics.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/basic_statistics.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sym_mat3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp: In function ‘int scitbx::lapack::boost_python::dsyev_wrapper(const std::string&, const std::string&, const scitbx::af::ref >&, const scitbx::af::ref&, bool)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp:246:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 246 | SCITBX_ASSERT(w.size() == n); | ~~~~~~~~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/linalg/boost_python/lapack_fem_bpl.cpp:246:5: note: in expansion of macro ‘SCITBX_ASSERT’ 246 | SCITBX_ASSERT(w.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/math/boost_python/gaussian.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/gaussian.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_array_family_shared_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_array_family_shared_ext.so.0 scitbx/array_family/boost_python/shared_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm -lboost_numpy314 g++ -o scitbx/math/boost_python/golay.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/golay.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_linalg_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_linalg_ext.so.0 scitbx/linalg/boost_python/linalg_ext.o scitbx/linalg/boost_python/matrix.o scitbx/linalg/boost_python/cholesky.o scitbx/linalg/boost_python/householder.o scitbx/linalg/boost_python/svd.o scitbx/linalg/boost_python/eigensystem.o scitbx/linalg/boost_python/lapack_fem_bpl.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_linalg_ext.so.0.0.1' 'lib/scitbx_linalg_ext.so.0'->'lib/scitbx_linalg_ext.so.0.0.1' 'lib/scitbx_linalg_ext.so'->'lib/scitbx_linalg_ext.so.0.0.1' Create symlinks for: 'lib/scitbx_array_family_shared_ext.so.0.0.1' 'lib/scitbx_array_family_shared_ext.so.0'->'lib/scitbx_array_family_shared_ext.so.0.0.1' 'lib/scitbx_array_family_shared_ext.so'->'lib/scitbx_array_family_shared_ext.so.0.0.1' g++ -o scitbx/math/boost_python/minimum_covering_sphere.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/minimum_covering_sphere.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/principal_axes_of_inertia.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/principal_axes_of_inertia.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/row_echelon.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/row_echelon.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/tensor_rank_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/tensor_rank_2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/chebyshev.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/chebyshev.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/icosahedron.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/icosahedron.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/slatec.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/slatec.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/line_search.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/line_search.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/r3_rotation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/r3_rotation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_lstbx_normal_equations_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_lstbx_normal_equations_ext.so.0 scitbx/lstbx/boost_python/lstbx_ext.o scitbx/lstbx/boost_python/normal_equations.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1' 'lib/scitbx_lstbx_normal_equations_ext.so.0'->'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1' 'lib/scitbx_lstbx_normal_equations_ext.so'->'lib/scitbx_lstbx_normal_equations_ext.so.0.0.1' g++ -o scitbx/math/boost_python/resample.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/resample.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/quadrature.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/quadrature.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/unimodular_generator.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/unimodular_generator.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/halton.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/halton.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/least_squares_plane.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/least_squares_plane.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/continued_fraction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/continued_fraction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/numeric_limits.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/numeric_limits.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/distributions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/distributions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/exp_functions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/exp_functions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/zernike.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/zernike.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/zernike_moments.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/zernike_moments.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/2d_zernike_moments.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/2d_zernike_moments.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/weighted_covariance.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/weighted_covariance.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/scitbx_array_family_flex_ext.so.0.0.1' 'lib/scitbx_array_family_flex_ext.so.0'->'lib/scitbx_array_family_flex_ext.so.0.0.1' 'lib/scitbx_array_family_flex_ext.so'->'lib/scitbx_array_family_flex_ext.so.0.0.1' g++ -o scitbx/math/boost_python/rotation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/rotation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/interpolation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/interpolation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/tetrahedron.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/tetrahedron.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/math/boost_python/angle_derivative.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/boost_python/angle_derivative.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/minpack/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/minpack/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/r3_utils_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/r3_utils_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/minpack/raw.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/minpack/levenberg_marquardt.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/minpack/ext.cpp:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/minpack/levenberg_marquardt.h: In member function ‘void scitbx::minpack::levenberg_marquardt::process_fvec(const scitbx::af::const_ref&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/minpack/levenberg_marquardt.h:80:35: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 80 | SCITBX_ASSERT(fvec.size() == m); | ~~~~~~~~~~~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/minpack/levenberg_marquardt.h:80:9: note: in expansion of macro ‘SCITBX_ASSERT’ 80 | SCITBX_ASSERT(fvec.size() == m); | ^~~~~~~~~~~~~ g++ -o scitbx/random/boost_python/random_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/random/boost_python/random_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/random/boost_python/basic_distributions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/random/boost_python/basic_distributions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/rigid_body/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_minpack_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_minpack_ext.so.0 scitbx/minpack/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_minpack -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/scitbx_r3_utils_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_r3_utils_ext.so.0 scitbx/r3_utils_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_minpack_ext.so.0.0.1' 'lib/scitbx_minpack_ext.so.0'->'lib/scitbx_minpack_ext.so.0.0.1' 'lib/scitbx_minpack_ext.so'->'lib/scitbx_minpack_ext.so.0.0.1' Create symlinks for: 'lib/scitbx_r3_utils_ext.so.0.0.1' 'lib/scitbx_r3_utils_ext.so.0'->'lib/scitbx_r3_utils_ext.so.0.0.1' 'lib/scitbx_r3_utils_ext.so'->'lib/scitbx_r3_utils_ext.so.0.0.1' g++ -o scitbx/sparse/boost_python/vector.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sparse/boost_python/vector.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/sparse/boost_python/matrix.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sparse/boost_python/matrix.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/sparse/boost_python/approx_equal.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sparse/boost_python/approx_equal.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/sparse/boost_python/random.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sparse/boost_python/random.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/sparse/boost_python/lu_factorization.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sparse/boost_python/lu_factorization.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/vec3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rotr3.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/spatial_lib.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/featherstone.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/tardy.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/ext.cpp:14: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 4]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:361:21: required from ‘scitbx::rotr3 scitbx::rigid_body::joint_lib::six_dof_aja_simplified(const scitbx::vec3&, const scitbx::af::const_ref&) [with FloatType = double]’ 361 | af::tiny qe(&q[0], &q[4]); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/ext.cpp:24:49: required from here 24 | result = joint_lib::six_dof_aja_simplified(center_of_mass, q); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/accessors/flex_grid.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_matrix.h:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/spatial_lib.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 6]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:44:33: required from ‘scitbx::af::small::small(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 6]’ 44 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/featherstone.h:683:31: required from ‘scitbx::af::shared > scitbx::rigid_body::featherstone::system_model::inverse_dynamics(const scitbx::af::const_ref >&, const scitbx::af::const_ref >&, const scitbx::af::const_ref&) [with FloatType = double]’ 683 | tau_array[ib] = af::small(f[ib].begin(), f[ib].end()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/featherstone.h:705:21: required from ‘scitbx::af::shared scitbx::rigid_body::featherstone::system_model::inverse_dynamics_packed(const scitbx::af::const_ref&, const scitbx::af::const_ref&, const scitbx::af::const_ref&) [with FloatType = double]’ 705 | tau_array = inverse_dynamics( | ^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/ext.cpp:120:46: required from here 120 | .def("inverse_dynamics_packed", &wt::inverse_dynamics_packed, ( | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:59:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 59 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/mat3.h:5: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/tardy.h: In instantiation of ‘scitbx::af::shared > > scitbx::rigid_body::tardy::construct_bodies(const scitbx::af::const_ref >&, const scitbx::af::const_ref&, const boost::python::api::object&, const FloatType&) [with FloatType = double]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/tardy.h:203:54: required from ‘scitbx::rigid_body::tardy::model::model(const boost::python::api::object&, const scitbx::af::shared >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, const ft&) [with FloatType = double; ft = double]’ 203 | featherstone::system_model(construct_bodies( | ~~~~~~~~~~~~~~~~^ 204 | sites_.const_ref(), | ~~~~~~~~~~~~~~~~~~~ 205 | masses_.const_ref(), | ~~~~~~~~~~~~~~~~~~~~ 206 | tardy_tree_.attr("cluster_manager"), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 | near_singular_hinges_angular_tolerance_deg_)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/object/value_holder.hpp:131:11: required from ‘boost::python::objects::value_holder::value_holder(PyObject*, A0, A1, A2, A3, A4, A5) [with A0 = boost::python::objects::reference_to_value; A1 = boost::python::objects::reference_to_value >&>; A2 = boost::python::objects::reference_to_value&>; A3 = boost::python::objects::reference_to_value; A4 = boost::python::objects::reference_to_value; A5 = boost::python::objects::reference_to_value; Value = scitbx::rigid_body::tardy::model<>; PyObject = _object]’ 131 | PyObject* self BOOST_PP_COMMA_IF(N) BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, A, a)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 | : m_held( | ~~~~~~~~~ 133 | BOOST_PP_REPEAT_1ST(N, BOOST_PYTHON_UNFORWARD_LOCAL, nil) | ~ /usr/include/boost/python/object/make_holder.hpp:95:18: required from ‘static void boost::python::objects::make_holder<6>::apply::execute(PyObject*, t0, t1, t2, t3, t4, t5) [with Holder = boost::python::objects::value_holder >; ArgList = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; PyObject = _object; t0 = const boost::python::api::object&; t1 = const scitbx::af::shared >&; t2 = const scitbx::af::shared&; t3 = const boost::python::api::object&; t4 = const boost::python::api::object&; t5 = const double&]’ 95 | try { | ~^ 96 | (new (memory) Holder( | ~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/detail/make_keyword_range_fn.hpp:63:47: required from ‘boost::python::api::object boost::python::detail::make_keyword_range_constructor(const CallPolicies&, const keyword_range&, Holder*, ArgList*, Arity*) [with ArgList = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; Arity = boost::mpl::size >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional > >; Holder = boost::python::objects::value_holder >; CallPolicies = boost::python::default_call_policies; keyword_range = std::pair]’ 63 | return detail::make_keyword_range_function( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 64 | objects::make_holder | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | ::template apply::execute | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 | , policies | ~~~~~~~~~~ 67 | , kw); | ~~~~~ /usr/include/boost/python/init.hpp:310:66: required from ‘void boost::python::detail::def_init_aux(ClassT&, const Signature&, NArgs, const CallPoliciesT&, const char*, const keyword_range&) [with ClassT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; NArgs = boost::mpl::size >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional > >; keyword_range = std::pair]’ 310 | , detail::make_keyword_range_constructor( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 311 | policies | ~~~~~~~~ 312 | , keywords_ | ~~~~~~~~~~~ 313 | , (typename ClassT::metadata::holder*)0 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 | ) | ~ /usr/include/boost/python/init.hpp:344:31: required from ‘static void boost::python::detail::define_class_init_helper::apply(ClassT&, const CallPoliciesT&, const Signature&, NArgs, const char*, boost::python::detail::keyword_range) [with ClassT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; CallPoliciesT = boost::python::default_call_policies; Signature = boost::mpl::joint_view >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional >; NArgs = boost::mpl::size >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_, mpl_::void_> >, boost::python::optional > >; int NDefaults = 1; boost::python::detail::keyword_range = std::pair]’ 344 | detail::def_init_aux(cl, args, NArgs(), policies, doc, keywords); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/init.hpp:149:67: required from ‘void boost::python::init_base::visit(classT&) const [with classT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; DerivedT = boost::python::init >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional >]’ 149 | detail::define_class_init_helper::apply( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 150 | cl | ~~ 151 | , derived().call_policies() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 | , signature() | ~~~~~~~~~~~~~ 153 | , n_arguments() | ~~~~~~~~~~~~~~~ 154 | , derived().doc_string() | ~~~~~~~~~~~~~~~~~~~~~~~~ 155 | , derived().keywords()); | ~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/python/def_visitor.hpp:31:34: required from ‘static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional > >; classT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>]’ 31 | v.derived_visitor().visit(c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/boost/python/def_visitor.hpp:67:34: required from ‘void boost::python::def_visitor::visit(classT&) const [with classT = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>; DerivedVisitor = boost::python::init >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional >]’ 67 | def_visitor_access::visit(*this, c); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/boost/python/class.hpp:221:22: required from ‘boost::python::class_::self& boost::python::class_::def(const boost::python::def_visitor&) [with Derived = boost::python::init >&, const scitbx::af::shared&, const boost::python::api::object&, const boost::python::api::object&, boost::python::optional >; W = scitbx::rigid_body::tardy::model<>; X1 = boost::python::bases >; X2 = boost::noncopyable_::noncopyable; X3 = boost::python::detail::not_specified; self = boost::python::class_, boost::python::bases >, boost::noncopyable_::noncopyable>]’ 221 | visitor.visit(*this); | ~~~~~~~~~~~~~^~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/ext.cpp:151:13: required from here 146 | class_ >, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 | boost::noncopyable | ~~~~~~~~~~~~~~~~~~ 149 | >("tardy_model", no_init) | ~~~~~~~~~~~~~~~~~~~~~~~~~ 150 | .enable_pickling() | ~~~~~~~~~~~~~~~~~~ 151 | .def(init< | ~~~~^~~~~~ 152 | object const&, | ~~~~~~~~~~~~~~ 153 | af::shared > const&, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 | af::shared const&, | ~~~~~~~~~~~~~~~~~~~~~~ 155 | object const&, | ~~~~~~~~~~~~~~ 156 | object const&, | ~~~~~~~~~~~~~~ 157 | optional >(( | ~~~~~~~~~~~~~~~~~~~~~~~ 158 | arg("labels"), | ~~~~~~~~~~~~~~ 159 | arg("sites"), | ~~~~~~~~~~~~~ 160 | arg("masses"), | ~~~~~~~~~~~~~~ 161 | arg("tardy_tree"), | ~~~~~~~~~~~~~~~~~~ 162 | arg("potential_obj"), | ~~~~~~~~~~~~~~~~~~~~~ 163 | arg("near_singular_hinges_angular_tolerance_deg")=5))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/tardy.h:163:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 163 | SCITBX_ASSERT(body->parent < nc); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/tardy.h:163:9: note: in expansion of macro ‘SCITBX_ASSERT’ 163 | SCITBX_ASSERT(body->parent < nc); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 1]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:648:13: required from ‘boost::shared_ptr > scitbx::rigid_body::joint_lib::revolute::new_q(const scitbx::af::const_ref&) const [with FloatType = double]’ 648 | af::tiny(q.begin(), q.end()))); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:643:5: required from here 643 | new_q( | ^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 12]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:45:16: required from ‘scitbx::af::tiny scitbx::rigid_body::joint_lib::rbda_eq_4_13(const scitbx::af::tiny&) [with FloatType = double]’ 45 | return af::tiny(coeffs, coeffs+4*3) * ft(0.5); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:279:21: required from ‘boost::shared_ptr > scitbx::rigid_body::joint_lib::six_dof::time_step_position(const scitbx::af::const_ref&, const ft&) const [with FloatType = double; ft = double]’ 279 | rbda_eq_4_13(unit_quaternion), w_body_frame); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:271:5: required from here 271 | time_step_position( | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h: In instantiation of ‘scitbx::af::tiny::tiny(const OtherElementType*, const OtherElementType*) [with OtherElementType = double; ElementType = double; long unsigned int N = 16]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:79:16: required from ‘scitbx::af::tiny scitbx::rigid_body::joint_lib::d_unit_quaternion_d_qe_matrix(const scitbx::af::tiny&) [with FloatType = double]’ 79 | return af::tiny(coeffs, coeffs+4*4) / n3; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:317:58: required from ‘scitbx::af::small scitbx::rigid_body::joint_lib::six_dof::tau_as_d_e_pot_d_q(const scitbx::af::small&) const [with FloatType = double]’ 317 | af::tiny d = d_unit_quaternion_d_qe_matrix(qe); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:313:5: required from here 313 | tau_as_d_e_pot_d_q( | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/tiny_helpers.h:148:20: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 148 | if (last - first != this->size()) throw_range_error(); \ | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny.h:30:7: note: in expansion of macro ‘SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS’ 30 | SCITBX_ARRAY_FAMILY_TINY_CONVENIENCE_CONSTRUCTORS(tiny) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 7]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small.h:44:33: required from ‘scitbx::af::small::small(const ElementType*, const ElementType*) [with ElementType = double; long unsigned int N = 7]’ 44 | : base_class(first, last) | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:324:24: required from ‘scitbx::af::small scitbx::rigid_body::joint_lib::six_dof::tau_as_d_e_pot_d_q(const scitbx::af::small&) const [with FloatType = double]’ 324 | af::small result(cn.begin(), cn.end()); | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/joint_lib.h:313:5: required from here 313 | tau_as_d_e_pot_d_q( | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:59:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 59 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o scitbx/sparse/boost_python/sparse_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sparse/boost_python/sparse_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/stl/map_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/map_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/stl/set_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_math_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_math_ext.so.0 scitbx/math/boost_python/math_ext.o scitbx/math/boost_python/basic_statistics.o scitbx/math/boost_python/gaussian.o scitbx/math/boost_python/golay.o scitbx/math/boost_python/minimum_covering_sphere.o scitbx/math/boost_python/principal_axes_of_inertia.o scitbx/math/boost_python/row_echelon.o scitbx/math/boost_python/tensor_rank_2.o scitbx/math/boost_python/chebyshev.o scitbx/math/boost_python/icosahedron.o scitbx/math/boost_python/slatec.o scitbx/math/boost_python/line_search.o scitbx/math/boost_python/r3_rotation.o scitbx/math/boost_python/resample.o scitbx/math/boost_python/quadrature.o scitbx/math/boost_python/unimodular_generator.o scitbx/math/boost_python/halton.o scitbx/math/boost_python/least_squares_plane.o scitbx/math/boost_python/continued_fraction.o scitbx/math/boost_python/numeric_limits.o scitbx/math/boost_python/distributions.o scitbx/math/boost_python/exp_functions.o scitbx/math/boost_python/zernike.o scitbx/math/boost_python/zernike_moments.o scitbx/math/boost_python/2d_zernike_moments.o scitbx/math/boost_python/weighted_covariance.o scitbx/math/boost_python/rotation.o scitbx/math/boost_python/interpolation.o scitbx/math/boost_python/tetrahedron.o scitbx/math/boost_python/angle_derivative.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_slatec -lscitbx_boost_python -lboost_thread -lboost_python314 -lm In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_ext.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_wrapper.h: In static member function ‘static void scitbx::stl::boost_python::set_wrapper::wrap(const std::string&)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_wrapper.h:52:28: warning: ‘template class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 52 | bp::class_ >(python_name.c_str()) | ^~~~~~~~ In file included from /usr/include/c++/16/memory:80, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_wrapper.h:4: /usr/include/c++/16/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::set, std::allocator >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::set, std::allocator >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_wrapper.h:68:52: required from ‘static void scitbx::stl::boost_python::set_wrapper::wrap(const std::string&) [with ElementType = unsigned int; std::string = std::__cxx11::basic_string]’ 68 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 69 | w_t, scitbx::boost_python::container_conversions::set_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_ext.cpp:9:32: required from here 9 | set_wrapper::wrap("unsigned"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::set, std::less >, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::set, std::less >, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::set_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_wrapper.h:68:52: required from ‘static void scitbx::stl::boost_python::set_wrapper::wrap(const std::string&) [with ElementType = std::__cxx11::basic_string; std::string = std::__cxx11::basic_string]’ 68 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 69 | w_t, scitbx::boost_python::container_conversions::set_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/set_ext.cpp:10:35: required from here 10 | set_wrapper::wrap("stl_string"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o scitbx/stl/vector_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_random_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_random_ext.so.0 scitbx/random/boost_python/random_ext.o scitbx/random/boost_python/basic_distributions.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_plain.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/versa_matrix.h:4: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::vec3]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/16/memory:71, from /usr/include/boost/config/no_tr1/memory.hpp:21, from /usr/include/boost/get_pointer.hpp:14, from /usr/include/boost/python/object/pointer_holder.hpp:11, from /usr/include/boost/python/to_python_indirect.hpp:10, from /usr/include/boost/python/converter/arg_to_python.hpp:10, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/array_as_list.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/rigid_body/ext.cpp:3: /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::vec3&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::vec3*; _Size = long unsigned int; _Tp = scitbx::vec3]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ Create symlinks for: 'lib/scitbx_random_ext.so.0.0.1' 'lib/scitbx_random_ext.so.0'->'lib/scitbx_random_ext.so.0.0.1' 'lib/scitbx_random_ext.so'->'lib/scitbx_random_ext.so.0.0.1' g++ -o scitbx/suffixtree/boost_python/suffixtree_shared_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/suffixtree/boost_python/suffixtree_shared_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/scitbx_math_ext.so.0.0.1' 'lib/scitbx_math_ext.so.0'->'lib/scitbx_math_ext.so.0.0.1' 'lib/scitbx_math_ext.so'->'lib/scitbx_math_ext.so.0.0.1' g++ -o scitbx/suffixtree/boost_python/suffixtree_single_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/suffixtree/boost_python/suffixtree_single_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain::shared_plain(const size_type&) [with ElementType = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:34: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/16/bits/stl_uninitialized.h:550:5: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘_ForwardIterator std::uninitialized_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = scitbx::af::tiny*; _Size = long unsigned int; _Tp = scitbx::af::tiny]’ declared here 550 | uninitialized_fill_n(_ForwardIterator __first, _Size __n, const _Tp& __x) | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:132:48: note: ‘’ declared here 132 | std::uninitialized_fill_n(begin(), sz, ElementType()); | ^~~~~~~~~~~~~ g++ -o scitbx/suffixtree/boost_python/object_extensions.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/suffixtree/boost_python/object_extensions.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/shared_plain.h:307: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h: In function ‘void scitbx::af::shared_plain::resize(const size_type&) [with ElementType = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:175:15: warning: ‘’ may be used uninitialized [-Wmaybe-uninitialized] 175 | resize(new_size, ElementType()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:165:12: note: by argument 3 of type ‘const scitbx::af::tiny&’ to ‘void scitbx::af::shared_plain::resize(const size_type&, const ElementType&) [with ElementType = scitbx::af::tiny]’ declared here 165 | void resize(size_type const& new_size, ElementType const& x) { | ^~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/detail/push_back_etc.h:175:26: note: ‘’ declared here 175 | resize(new_size, ElementType()); | ^~~~~~~~~~~~~ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object/class.hpp:9, from /usr/include/boost/python/class.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_wrapper.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_ext.cpp:2: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_wrapper.h:121:52: required from ‘static void scitbx::stl::boost_python::vector_wrapper::wrap(const std::string&) [with ElementType = unsigned int; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 121 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 122 | w_t, | ~~~~ 123 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_ext.cpp:10:35: required from here 10 | vector_wrapper::wrap("unsigned"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_wrapper.h:121:52: required from ‘static void scitbx::stl::boost_python::vector_wrapper::wrap(const std::string&) [with ElementType = double; GetitemReturnValuePolicy = boost::python::return_value_policy; std::string = std::__cxx11::basic_string]’ 121 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 122 | w_t, | ~~~~ 123 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_ext.cpp:11:33: required from here 11 | vector_wrapper::wrap("double"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector, std::allocator > >; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_wrapper.h:121:52: required from ‘static void scitbx::stl::boost_python::vector_wrapper::wrap(const std::string&) [with ElementType = std::set; GetitemReturnValuePolicy = boost::python::return_internal_reference<>; std::string = std::__cxx11::basic_string]’ 121 | scitbx::boost_python::container_conversions::from_python_sequence< | ^~~~~~~~~~~~~~~~~~~~~ 122 | w_t, | ~~~~ 123 | scitbx::boost_python::container_conversions | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 | ::variable_capacity_policy>(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/stl/vector_ext.cpp:14:50: required from here 14 | vector_wrapper, rir>::wrap("set_unsigned"); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ g++ -o scitbx/wigner/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/wigner/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_stl_set_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_stl_set_ext.so.0 scitbx/stl/set_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/scitbx_suffixtree_shared_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_suffixtree_shared_ext.so.0 scitbx/suffixtree/boost_python/suffixtree_shared_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_stl_set_ext.so.0.0.1' 'lib/scitbx_stl_set_ext.so.0'->'lib/scitbx_stl_set_ext.so.0.0.1' 'lib/scitbx_stl_set_ext.so'->'lib/scitbx_stl_set_ext.so.0.0.1' g++ -o smtbx/ab_initio/ab_initio_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/ab_initio/ab_initio_ext.cpp Create symlinks for: 'lib/scitbx_suffixtree_shared_ext.so.0.0.1' 'lib/scitbx_suffixtree_shared_ext.so.0'->'lib/scitbx_suffixtree_shared_ext.so.0.0.1' 'lib/scitbx_suffixtree_shared_ext.so'->'lib/scitbx_suffixtree_shared_ext.so.0.0.1' cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/array_family/af_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/array_family/af_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_sparse_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_sparse_ext.so.0 scitbx/sparse/boost_python/vector.o scitbx/sparse/boost_python/matrix.o scitbx/sparse/boost_python/approx_equal.o scitbx/sparse/boost_python/random.o scitbx/sparse/boost_python/lu_factorization.o scitbx/sparse/boost_python/sparse_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_sparse_ext.so.0.0.1' 'lib/scitbx_sparse_ext.so.0'->'lib/scitbx_sparse_ext.so.0.0.1' 'lib/scitbx_sparse_ext.so'->'lib/scitbx_sparse_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/affine.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/affine.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_array_family_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_array_family_ext.so.0 smtbx/array_family/af_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/smtbx_array_family_ext.so.0.0.1' 'lib/smtbx_array_family_ext.so.0'->'lib/smtbx_array_family_ext.so.0.0.1' 'lib/smtbx_array_family_ext.so'->'lib/smtbx_array_family_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/constraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/constraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_rigid_body_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_rigid_body_ext.so.0 scitbx/rigid_body/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/smtbx_ab_initio_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_ab_initio_ext.so.0 smtbx/ab_initio/ab_initio_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_rigid_body_ext.so.0.0.1' 'lib/scitbx_rigid_body_ext.so.0'->'lib/scitbx_rigid_body_ext.so.0.0.1' 'lib/scitbx_rigid_body_ext.so'->'lib/scitbx_rigid_body_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/direction.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/direction.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/smtbx_ab_initio_ext.so.0.0.1' 'lib/smtbx_ab_initio_ext.so.0'->'lib/smtbx_ab_initio_ext.so.0.0.1' 'lib/smtbx_ab_initio_ext.so'->'lib/smtbx_ab_initio_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/geometrical_hydrogens.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/geometrical_hydrogens.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_wigner_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_wigner_ext.so.0 scitbx/wigner/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_wigner_ext.so.0.0.1' 'lib/scitbx_wigner_ext.so.0'->'lib/scitbx_wigner_ext.so.0.0.1' 'lib/scitbx_wigner_ext.so'->'lib/scitbx_wigner_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/independent_scalar_parameters.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/independent_scalar_parameters.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/occupancy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/occupancy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/reparametrisation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/reparametrisation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_stl_vector_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_stl_vector_ext.so.0 scitbx/stl/vector_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_stl_vector_ext.so.0.0.1' 'lib/scitbx_stl_vector_ext.so.0'->'lib/scitbx_stl_vector_ext.so.0.0.1' 'lib/scitbx_stl_vector_ext.so'->'lib/scitbx_stl_vector_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/rigid.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/rigid.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/scitbx_stl_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_stl_map_ext.so.0 scitbx/stl/map_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/scitbx_suffixtree_single_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=scitbx_suffixtree_single_ext.so.0 scitbx/suffixtree/boost_python/suffixtree_single_ext.o scitbx/suffixtree/boost_python/object_extensions.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/scitbx_stl_map_ext.so.0.0.1' 'lib/scitbx_stl_map_ext.so.0'->'lib/scitbx_stl_map_ext.so.0.0.1' 'lib/scitbx_stl_map_ext.so'->'lib/scitbx_stl_map_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/same_group.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/same_group.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/scaled_adp.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/scaled_adp.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/scitbx_suffixtree_single_ext.so.0.0.1' 'lib/scitbx_suffixtree_single_ext.so.0'->'lib/scitbx_suffixtree_single_ext.so.0.0.1' 'lib/scitbx_suffixtree_single_ext.so'->'lib/scitbx_suffixtree_single_ext.so.0.0.1' g++ -o smtbx/refinement/constraints/boost_python/scatterer_parameters.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/scatterer_parameters.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/shared.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/shared.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/special_position.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/special_position.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/symmetry_equivalent.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/symmetry_equivalent.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/boost_python/least_squares_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/boost_python/least_squares_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/boost_python/weighting_schemes.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/boost_python/weighting_schemes.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/boost_python/least_squares.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/boost_python/least_squares.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/restraints/boost_python/origin_fixing.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/restraints/boost_python/origin_fixing.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/restraints/boost_python/restraints_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/restraints/boost_python/restraints_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/stl/map_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/stl/map_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/structure_factors/direct/boost_python/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/structure_factors/direct/boost_python/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/structure_factors/direct/boost_python/standard_xray.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/structure_factors/direct/boost_python/standard_xray.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/array_family/flex_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/python3.14 -Ispotfinder/array_family/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/array_family/src -Ispotfinder/array_family/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/array_family/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/array_family/flex_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/array_family/flex_distl_spot.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/python3.14 -Ispotfinder/array_family/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/array_family/src -Ispotfinder/array_family/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/array_family/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/array_family/flex_distl_spot.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/core_toolbox/boost_python/distltbx_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/python3.14 -Ispotfinder/core_toolbox/boost_python/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/boost_python/src -Ispotfinder/core_toolbox/boost_python/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/boost_python/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/boost_python/distltbx_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_stl_map_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_stl_map_ext.so.0 smtbx/stl/map_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/smtbx_stl_map_ext.so.0.0.1' 'lib/smtbx_stl_map_ext.so.0'->'lib/smtbx_stl_map_ext.so.0.0.1' 'lib/smtbx_stl_map_ext.so'->'lib/smtbx_stl_map_ext.so.0.0.1' g++ -o spotfinder/diffraction/geometry.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/python3.14 -Ispotfinder/core_toolbox/boost_python/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/boost_python/src -Ispotfinder/core_toolbox/boost_python/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/boost_python/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/diffraction/geometry.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o spotfinder/dxtbx_toolbox/ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/python3.14 -Ispotfinder/dxtbx_toolbox/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/dxtbx_toolbox/src -Ispotfinder/dxtbx_toolbox/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/dxtbx_toolbox/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/dxtbx_toolbox/ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_refinement_constraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_refinement_constraints_ext.so.0 smtbx/refinement/constraints/boost_python/affine.o smtbx/refinement/constraints/boost_python/constraints_ext.o smtbx/refinement/constraints/boost_python/direction.o smtbx/refinement/constraints/boost_python/geometrical_hydrogens.o smtbx/refinement/constraints/boost_python/independent_scalar_parameters.o smtbx/refinement/constraints/boost_python/occupancy.o smtbx/refinement/constraints/boost_python/reparametrisation.o smtbx/refinement/constraints/boost_python/rigid.o smtbx/refinement/constraints/boost_python/same_group.o smtbx/refinement/constraints/boost_python/scaled_adp.o smtbx/refinement/constraints/boost_python/scatterer_parameters.o smtbx/refinement/constraints/boost_python/shared.o smtbx/refinement/constraints/boost_python/special_position.o smtbx/refinement/constraints/boost_python/symmetry_equivalent.o smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.o smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lsmtbx_refinement_constraints -lscitbx_boost_python -lcctbx -lboost_thread -lboost_python314 -lm g++ -o spotfinder/core_toolbox/boost_python/hough_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/annlib_adaptbx/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/dxtbx/src -I/usr/include/python3.14 -Ispotfinder/core_toolbox/boost_python/src -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/boost_python/src -Ispotfinder/core_toolbox/boost_python/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/boost_python/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/spotfinder/core_toolbox/boost_python/hough_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_refinement_restraints_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_refinement_restraints_ext.so.0 smtbx/refinement/restraints/boost_python/origin_fixing.o smtbx/refinement/restraints/boost_python/restraints_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/smtbx_refinement_constraints_ext.so.0.0.1' 'lib/smtbx_refinement_constraints_ext.so.0'->'lib/smtbx_refinement_constraints_ext.so.0.0.1' 'lib/smtbx_refinement_constraints_ext.so'->'lib/smtbx_refinement_constraints_ext.so.0.0.1' g++ -o lib/std_pair_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=std_pair_ext.so.0 boost_adaptbx/std_pair_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lboost_python314 -lm -lboost_timer Create symlinks for: 'lib/smtbx_refinement_restraints_ext.so.0.0.1' 'lib/smtbx_refinement_restraints_ext.so.0'->'lib/smtbx_refinement_restraints_ext.so.0.0.1' 'lib/smtbx_refinement_restraints_ext.so'->'lib/smtbx_refinement_restraints_ext.so.0.0.1' Create symlinks for: 'lib/std_pair_ext.so.0.0.1' 'lib/std_pair_ext.so.0'->'lib/std_pair_ext.so.0.0.1' 'lib/std_pair_ext.so'->'lib/std_pair_ext.so.0.0.1' g++ -o xcif/xcif_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/xcif_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o mmtbx/masks/tst_mask.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/mmtbx/masks/tst_mask.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/spotfinder_hough_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_hough_ext.so.0 spotfinder/core_toolbox/boost_python/hough_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o lib/spotfinder_dxtbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_dxtbx_ext.so.0 spotfinder/dxtbx_toolbox/ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -ldxtbxspotfinder -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/spotfinder_hough_ext.so.0.0.1' 'lib/spotfinder_hough_ext.so.0'->'lib/spotfinder_hough_ext.so.0.0.1' 'lib/spotfinder_hough_ext.so'->'lib/spotfinder_hough_ext.so.0.0.1' g++ -o scitbx/array_family/boost_python/regression_test_ext.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/usr/include/python3.14 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/spotfinder_dxtbx_ext.so.0.0.1' 'lib/spotfinder_dxtbx_ext.so.0'->'lib/spotfinder_dxtbx_ext.so.0.0.1' 'lib/spotfinder_dxtbx_ext.so'->'lib/spotfinder_dxtbx_ext.so.0.0.1' g++ -o scitbx/array_family/tst_accessors.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:15: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<1>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:127:11: required from here 127 | verify(__LINE__, a.as_flex_grid().all(), a); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<4>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:145:11: required from here 145 | verify(__LINE__, a.as_flex_grid().all(), a); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<2>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:172:11: required from here 172 | verify(__LINE__, a.as_flex_grid().all(), a); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::c_grid<3>]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:202:11: required from here 202 | verify(__LINE__, a.as_flex_grid().all(), a); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:248:11: required from here 248 | verify(__LINE__, a.as_flex_grid().all(), a.all()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:280:11: required from here 280 | verify(__LINE__, a.as_flex_grid().all(), a.all()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:326:11: required from here 326 | verify(__LINE__, a.as_flex_grid().all(), a.all()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp: In instantiation of ‘void {anonymous}::verify(long int, const VectorType1&, const VectorType2&) [with VectorType1 = scitbx::af::small; VectorType2 = scitbx::af::tiny]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_accessors.cpp:371:11: required from here 371 | verify(__LINE__, a.as_flex_grid().all(), a.all()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_helpers.cpp:17:18: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const long unsigned int’ [-Wsign-compare] 17 | if (v[i] != a[i]) { | ~~~~~^~~~~ g++ -o mmtbx/masks/tst_mask -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread mmtbx/masks/tst_mask.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lmmtbx_masks -liotbx_pdb -lcctbx -lomptbx -lcctbx_sgtbx_asu -lm g++ -o scitbx/array_family/tst_af_1.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /usr/include/boost/assert.hpp:71, from /usr/include/boost/smart_ptr/shared_ptr.hpp:23, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/object.hpp:9, from /usr/include/boost/python/list.hpp:10, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::vector; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::vector; ConversionPolicy = scitbx::boost_python::container_conversions::variable_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:156:78: required from here 156 | scitbx::boost_python::container_conversions::variable_capacity_policy>(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = std::__cxx11::list; ConversionPolicy = scitbx::boost_python::container_conversions::linked_list_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = std::__cxx11::list; ConversionPolicy = scitbx::boost_python::container_conversions::linked_list_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:160:72: required from here 160 | scitbx::boost_python::container_conversions::linked_list_policy>(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:164:71: required from here 164 | scitbx::boost_python::container_conversions::fixed_size_policy>(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = boost::array; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_size_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:168:71: required from here 168 | scitbx::boost_python::container_conversions::fixed_size_policy>(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h: In instantiation of ‘static void* scitbx::boost_python::container_conversions::from_python_sequence::convertible(PyObject*) [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy; PyObject = _object]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:146:9: required from ‘scitbx::boost_python::container_conversions::from_python_sequence::from_python_sequence() [with ContainerType = scitbx::af::small; ConversionPolicy = scitbx::boost_python::container_conversions::fixed_capacity_policy]’ 146 | &convertible, | ^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/boost_python/regression_test_ext.cpp:172:75: required from here 172 | scitbx::boost_python::container_conversions::fixed_capacity_policy>(); | ^ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/boost_python/container_conversions.h:197:33: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 197 | if (!is_range) assert(i == obj_size); | ~~^~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/deprecated_macros.hpp:8, from /usr/include/boost/smart_ptr/scoped_array.hpp:14, from /usr/include/boost/scoped_array.hpp:13, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/ref.h:10, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tiny_plain.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/scitbx/array_family/tiny_plain_apply.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:1: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::array_exercise::run_2() [with ArrayType = scitbx::af::small_plain]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::small_plain]’ 29 | run_2(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:619:52: required from here 619 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for(int i=0;i::run_2() [with ArrayType = scitbx::af::small]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::small]’ 29 | run_2(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:621:46: required from here 621 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::small_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for(int i=0;i::run_2() [with ArrayType = scitbx::af::shared_plain]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::shared_plain]’ 29 | run_2(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:624:48: required from here 624 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for(int i=0;i::run_2() [with ArrayType = scitbx::af::shared]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:29:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::shared]’ 29 | run_2(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:629:42: required from here 629 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:70:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::shared_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 70 | for(int i=0;i::run_1() [with ArrayType = scitbx::af::versa_plain; AltArrayType = scitbx::af::versa_plain >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:415:12: required from ‘static void {anonymous}::versa_exercise::run() [with ArrayType = scitbx::af::versa_plain; AltArrayType = scitbx::af::versa_plain >]’ 415 | run_1(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:635:64: required from here 634 | versa_exercise, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 | af::versa_plain > >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:437:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 437 | check_true(__LINE__, a2.end() - a2.begin() == a2.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:438:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 438 | check_true(__LINE__, a3.end() - a3.begin() == a3.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:439:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 439 | check_true(__LINE__, a4.end() - a4.begin() == a4.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:440:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 440 | check_true(__LINE__, a5.end() - a5.begin() == a5.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:441:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 441 | check_true(__LINE__, a6.end() - a6.begin() == a6.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp: In instantiation of ‘static void {anonymous}::versa_exercise::run_1() [with ArrayType = scitbx::af::versa; AltArrayType = scitbx::af::versa >]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:415:12: required from ‘static void {anonymous}::versa_exercise::run() [with ArrayType = scitbx::af::versa; AltArrayType = scitbx::af::versa >]’ 415 | run_1(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:637:58: required from here 636 | versa_exercise, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 | af::versa > >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:437:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 437 | check_true(__LINE__, a2.end() - a2.begin() == a2.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:438:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 438 | check_true(__LINE__, a3.end() - a3.begin() == a3.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:439:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 439 | check_true(__LINE__, a4.end() - a4.begin() == a4.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:440:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 440 | check_true(__LINE__, a5.end() - a5.begin() == a5.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:441:52: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘scitbx::af::versa_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 441 | check_true(__LINE__, a6.end() - a6.begin() == a6.size()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/scitbx/array_family/small_plain_apply.h:15, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h: In instantiation of ‘scitbx::af::small_plain::small_plain(const ElementType*, const ElementType*) [with ElementType = int; long unsigned int N = 128]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:41:17: required from ‘static void {anonymous}::array_exercise::run_1() [with ArrayType = scitbx::af::small_plain]’ 41 | ArrayType a5(a4.begin(), a4.begin()); | ^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:28:12: required from ‘static void {anonymous}::array_exercise::run() [with ArrayType = scitbx::af::small_plain]’ 28 | run_1(); | ~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_1.cpp:619:52: required from here 619 | array_exercise >::run(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/small_plain.h:59:15: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘long int’ [-Wsign-compare] 59 | if (N < last - first) throw_range_error(); | ~~^~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_accessors -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_accessors.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o scitbx/array_family/tst_af_2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_af_2 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_af_2.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o scitbx/array_family/tst_af_3.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_3.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_structure_factors_direct_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_structure_factors_direct_ext.so.0 smtbx/structure_factors/direct/boost_python/ext.o smtbx/structure_factors/direct/boost_python/standard_xray.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lboost_thread -lboost_python314 -lm g++ -o scitbx/array_family/tst_af_1 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_af_1.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o lib/xcif_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=xcif_ext.so.0 xcif/xcif_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread -lboost_python314 -lm g++ -o scitbx/array_family/tst_af_4.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_4.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/spotfinder_distltbx_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_distltbx_ext.so.0 spotfinder/core_toolbox/boost_python/distltbx_ext.o spotfinder/diffraction/geometry.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm Create symlinks for: 'lib/smtbx_structure_factors_direct_ext.so.0.0.1' 'lib/smtbx_structure_factors_direct_ext.so.0'->'lib/smtbx_structure_factors_direct_ext.so.0.0.1' 'lib/smtbx_structure_factors_direct_ext.so'->'lib/smtbx_structure_factors_direct_ext.so.0.0.1' g++ -o scitbx/array_family/tst_af_5.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_af_5.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/xcif_ext.so.0.0.1' 'lib/xcif_ext.so.0'->'lib/xcif_ext.so.0.0.1' 'lib/xcif_ext.so'->'lib/xcif_ext.so.0.0.1' g++ -o scitbx/array_family/tst_mat3.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_mat3.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/boost_python/regression_test_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=regression_test_ext.so.0 scitbx/array_family/boost_python/regression_test_ext.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lscitbx_boost_python -lboost_thread -lboost_python314 -lm -lboost_numpy314 Create symlinks for: 'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1' 'scitbx/array_family/boost_python/regression_test_ext.so.0'->'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1' 'scitbx/array_family/boost_python/regression_test_ext.so'->'scitbx/array_family/boost_python/regression_test_ext.so.0.0.1' g++ -o scitbx/array_family/tst_optional_copy.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_optional_copy.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/spotfinder_distltbx_ext.so.0.0.1' 'lib/spotfinder_distltbx_ext.so.0'->'lib/spotfinder_distltbx_ext.so.0.0.1' 'lib/spotfinder_distltbx_ext.so'->'lib/spotfinder_distltbx_ext.so.0.0.1' g++ -o scitbx/array_family/tst_rectangular_full_packed.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_rectangular_full_packed.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/smtbx_refinement_least_squares_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=smtbx_refinement_least_squares_ext.so.0 smtbx/refinement/boost_python/least_squares_ext.o smtbx/refinement/boost_python/weighting_schemes.o smtbx/refinement/boost_python/least_squares.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lsmtbx_refinement_constraints -lscitbx_boost_python -lcctbx -lboost_thread -lboost_python314 -lm g++ -o scitbx/array_family/tst_af_3 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_af_3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o scitbx/array_family/tst_ref_matrix_facet.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_ref_matrix_facet.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_rectangular_full_packed.cpp: In function ‘int main()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_rectangular_full_packed.cpp:52:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 52 | for(int i=0; i'lib/smtbx_refinement_least_squares_ext.so.0.0.1' 'lib/smtbx_refinement_least_squares_ext.so'->'lib/smtbx_refinement_least_squares_ext.so.0.0.1' g++ -o scitbx/array_family/tst_unsigned_float_arithmetic.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_unsigned_float_arithmetic.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_af_5 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_af_5.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm g++ -o scitbx/array_family/tst_mat3 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_mat3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm g++ -o scitbx/array_family/tst_vec3.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/usr/include -Iscitbx/array_family -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/array_family/tst_vec3.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/error/tst_error.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Iscitbx/error -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error/tst_error.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_optional_copy -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_optional_copy.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o scitbx/fftpack/timing/fftpack_timer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/timing/fftpack_timer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/error/tst_error -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/error/tst_error.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o scitbx/fftpack/timing/test0.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/timing/test0.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/array_family/tst_ref_matrix_facet -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_ref_matrix_facet.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o scitbx/array_family/tst_unsigned_float_arithmetic -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_unsigned_float_arithmetic.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o scitbx/lbfgs/sdrive_fem.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable scitbx/lbfgs/sdrive_fem.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lbfgs/tst_lbfgs.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgs/tst_lbfgs.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/complex_to_complex.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/timing/fftpack_timer.cpp:6: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/io.hpp:8, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/close_chain.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:6, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem.hpp:10, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include/scitbx/lbfgs_fem.hpp:1, from scitbx/lbfgs/sdrive_fem.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/simple_streams.hpp: In member function ‘virtual void fem::utils::simple_ostream_to_char_ptr_and_size::put(char)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/simple_streams.hpp:63:13: warning: comparison of integer expressions of different signedness: ‘fem::ssize_t’ {aka ‘long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 63 | if (i < sz) s[i++] = c; | ~~^~~~ g++ -o scitbx/array_family/tst_vec3 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_vec3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/complex_to_complex.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/complex_to_complex_3d.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/timing/test0.cpp:3: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h: In constructor ‘scitbx::fftpack::factorization::factorization(std::size_t, bool)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h:64:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 64 | for (i = 0; red_n > 1 && i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/fftpack/factorization.h:67:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::tiny_plain::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 67 | for (i = 0; i < opt_factors.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp: In member function ‘void fem::common::getarg(int, fem::str_ref) const’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/common.hpp:40:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 40 | if (pos < 0 || pos >= command_line_args.buffer.size()) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double_fmt.hpp:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:9: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp: In member function ‘void fem::utils::string_to_double::convert(fem::utils::simple_istream&, unsigned int, int)’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/string_to_double.hpp:115:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 115 | if (dexp <= ad_hoc_limits::max_digit_count) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp: In member function ‘double fem::read_loop::read_fmt_double()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/read.hpp:653:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 653 | if (iw+1 != ed.size()) { | ~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/variant.hpp:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:7: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp: In member function ‘void fem::utils::equivalence::array_alignment::infer_diffs0_from_diff_matrix()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/utils/equivalence.hpp:93:28: warning: comparison of integer expressions of different signedness: ‘const fem::ssize_t’ {aka ‘const long int’} and ‘fem::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 93 | if (c0e[0] == i0) { | ~~~~~~~^~~~~ g++ -o scitbx/lbfgsb/dev/driver1.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver1.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/major_types.hpp:8: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/write.hpp: In destructor ‘fem::write_loop::~write_loop()’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/fable/fem/write.hpp:704:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 704 | while (pos < internal_file_len) { | ~~~~^~~~~~~~~~~~~~~~~~~ g++ -o scitbx/array_family/tst_sym_mat3 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_sym_mat3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm g++ -o scitbx/lbfgsb/dev/driver2.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver2.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lbfgs/tst_lbfgs -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/lbfgs/tst_lbfgs.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm g++ -o scitbx/lbfgsb/dev/driver3.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver3.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error.h:16, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/serialization/base_256.h:2, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/math/floating_point_epsilon.h:4, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:5, from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver1.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver1.cpp:69:11: required from here 69 | setulb( | ~~~~~~^ 70 | n,m,x,l,u,nbd,f,g,factr,pgtol,wa,iwa,task,iprint, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | csave,lsave,isave,dsave); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/lbfgs/sdrive_fem -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/lbfgs/sdrive_fem.o scitbx/lbfgs/lbfgs_fem.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::write_ref1(const std::string&, const ref1&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:974:19: required from ‘void scitbx::lbfgsb::raw::prn3lb(const int&, const ref1&, const FloatType&, const std::string&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const FloatType&, const FloatType&, const int&, const std::string&, const int&, const FloatType&, const FloatType&, const int&, const FloatType&, const FloatType&, const FloatType&) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 974 | write_ref1(" X =", x); | ~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3786:15: required from ‘void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 3786 | prn3lb(n,x,f,task,iprint,info,itfile, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3787 | iter,nfgv,nintol,nskip,nact,sbgnrm, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3788 | zero,nint,word,iback,stp,xstep,k, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3789 | cachyt,sbtime,lnscht); | ~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver1.cpp:69:11: required from here 69 | setulb( | ~~~~~~^ 70 | n,m,x,l,u,nbd,f,g,factr,pgtol,wa,iwa,task,iprint, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 | csave,lsave,isave,dsave); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver2.cpp:102:19: required from here 102 | write_ref1(" ", x); | ~~~~~~~~~~^~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver2.cpp:70:11: required from here 70 | setulb( | ~~~~~~^ 71 | n,m,x,l,u,nbd,f,g,factr,pgtol,wa,iwa,task,iprint, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 | csave,lsave,isave,dsave); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ In file included from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver3.cpp:1: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h: In instantiation of ‘void scitbx::lbfgsb::raw::write_ref1(const std::string&, const ref1&, const char*) [with ElementType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver3.cpp:82:19: required from here 82 | write_ref1(" ", wa.get1(j+1,n)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:184:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 184 | for(int i=1;i<=a.size();i++) { | ~^~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:188:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 188 | for(int j=0;j&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref2&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:4433:11: required from ‘void scitbx::lbfgsb::raw::setulb(const int&, const int&, const ref1&, const ref1&, const ref1&, const ref1&, FloatType&, const ref1&, const FloatType&, const FloatType&, const ref1&, const ref1&, std::string&, const int&, std::string&, const ref1&, const ref1&, const ref1&, bool) [with FloatType = double; std::string = std::__cxx11::basic_string]’ 4433 | mainlb(n,m,x,l,u,nbd,f,g,factr,pgtol, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4434 | wa.get2(lws, n, m), | ~~~~~~~~~~~~~~~~~~~ 4435 | wa.get2(lwy, n, m), | ~~~~~~~~~~~~~~~~~~~ 4436 | wa.get2(lsy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4437 | wa.get2(lss, m, m), | ~~~~~~~~~~~~~~~~~~~ 4438 | wa.get2(lyy, m, m), | ~~~~~~~~~~~~~~~~~~~ 4439 | wa.get2(lwt, m, m), | ~~~~~~~~~~~~~~~~~~~ 4440 | wa.get2(lwn, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~ 4441 | wa.get2(lsnd, 2*m, 2*m), | ~~~~~~~~~~~~~~~~~~~~~~~~ 4442 | wa.get1(lz, n), | ~~~~~~~~~~~~~~~ 4443 | wa.get1(lr, n), | ~~~~~~~~~~~~~~~ 4444 | wa.get1(ld, n), | ~~~~~~~~~~~~~~~ 4445 | wa.get1(lt, n), | ~~~~~~~~~~~~~~~ 4446 | wa.get1(lwa, 8*m), | ~~~~~~~~~~~~~~~~~~ 4447 | wa.get1(lsg, m), | ~~~~~~~~~~~~~~~~ 4448 | wa.get1(lsgo, m), | ~~~~~~~~~~~~~~~~~ 4449 | wa.get1(lyg, m), | ~~~~~~~~~~~~~~~~ 4450 | wa.get1(lygo, m), | ~~~~~~~~~~~~~~~~~ 4451 | iwa.get1(1, n), | ~~~~~~~~~~~~~~~ 4452 | iwa.get1(n+1, n), | ~~~~~~~~~~~~~~~~~ 4453 | iwa.get1(2*n+1, n), | ~~~~~~~~~~~~~~~~~~~ 4454 | task,iprint,csave,lsave, | ~~~~~~~~~~~~~~~~~~~~~~~~ 4455 | ref1(&isave(22), 23), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 4456 | dsave, | ~~~~~~ 4457 | enable_stp_init); | ~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/dev/driver3.cpp:72:11: required from here 72 | setulb( | ~~~~~~^ 73 | n,m,x,l,u,nbd,f,g,factr,pgtol,wa,iwa,task,iprint, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 | csave,lsave,isave,dsave); | ~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3671:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3671 | SCITBX_ASSERT(x.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3671:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3671 | SCITBX_ASSERT(x.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3672:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3672 | SCITBX_ASSERT(l.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3672:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3672 | SCITBX_ASSERT(l.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3673:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3673 | SCITBX_ASSERT(u.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3673:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3673 | SCITBX_ASSERT(u.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3674:30: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3674 | SCITBX_ASSERT(nbd.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3674:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3674 | SCITBX_ASSERT(nbd.size() == n); | ^~~~~~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3675:28: warning: comparison of integer expressions of different signedness: ‘scitbx::af::const_ref::size_type’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 3675 | SCITBX_ASSERT(g.size() == n); /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/error_utils.h:166:9: note: in definition of macro ‘SCITBX_ERROR_UTILS_ASSERT’ 166 | if (!(assertion)) throw error_class(__FILE__, __LINE__, \ | ^~~~~~~~~ /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/lbfgsb/raw.h:3675:5: note: in expansion of macro ‘SCITBX_ASSERT’ 3675 | SCITBX_ASSERT(g.size() == n); | ^~~~~~~~~~~~~ g++ -o scitbx/fftpack/timing/fftpack_timer -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/fftpack/timing/fftpack_timer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lomptbx -lm g++ -o scitbx/matrix/tests/tst_cholesky.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Iscitbx/matrix/tests -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/tests /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/tests/tst_cholesky.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o lib/spotfinder_array_family_flex_ext.so.0.0.1 -shared -rdynamic -std=c++14 -Wl,-soname=spotfinder_array_family_flex_ext.so.0 spotfinder/array_family/flex_ext.o spotfinder/array_family/flex_distl_spot.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lspotfinder -lomptbx -lscitbx_boost_python -lboost_thread -lboost_python314 -lm g++ -o scitbx/math/tests/tst -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/math/tests/tst.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o scitbx/matrix/tests/tst_givens.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Iscitbx/matrix/tests -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/tests /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/tests/tst_givens.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lbfgsb/dev/driver1 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/lbfgsb/dev/driver1.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_timer -lboost_chrono -lm g++ -o scitbx/matrix/tests/tst_householder.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Iscitbx/matrix/tests -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/tests /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/tests/tst_householder.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/fftpack/timing/test0 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/fftpack/timing/test0.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread -lomptbx -lm g++ -o scitbx/matrix/tests/tst_svd.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Iscitbx/matrix/tests -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/tests /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/matrix/tests/tst_svd.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lbfgsb/dev/driver2 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/lbfgsb/dev/driver2.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_timer -lboost_chrono -lm g++ -o scitbx/serialization/tst_base_256.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -Wall -Wno-unknown-pragmas -Wno-parentheses -Winit-self -Wno-unused-local-typedefs -Werror=vla -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Iscitbx/serialization -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/serialization /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/serialization/tst_base_256.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ Create symlinks for: 'lib/spotfinder_array_family_flex_ext.so.0.0.1' 'lib/spotfinder_array_family_flex_ext.so.0'->'lib/spotfinder_array_family_flex_ext.so.0.0.1' 'lib/spotfinder_array_family_flex_ext.so'->'lib/spotfinder_array_family_flex_ext.so.0.0.1' g++ -o scitbx/sparse/tests/tst_sparse.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Iscitbx/sparse/tests -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sparse/tests /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/scitbx/sparse/tests/tst_sparse.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/lbfgsb/dev/driver3 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/lbfgsb/dev/driver3.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_timer -lboost_chrono -lm g++ -o smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/matrix/tests/tst_givens -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/matrix/tests/tst_givens.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o smtbx/refinement/constraints/tests/tst_reparametrisation.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/tests/tst_reparametrisation.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/serialization/tst_base_256 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/serialization/tst_base_256.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm g++ -o smtbx/refinement/constraints/tests/tst_special_position.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/usr/include -Ismtbx/refinement/constraints -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/smtbx/refinement/constraints/tests/tst_special_position.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/matrix/tests/tst_cholesky -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/matrix/tests/tst_cholesky.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o xcif/benchmarks/bench_xcif.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/benchmarks/bench_xcif.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/matrix/tests/tst_svd -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/matrix/tests/tst_svd.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o xcif/regression/cpp/example_parse.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/example_parse.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/matrix/tests/tst_householder -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/matrix/tests/tst_householder.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o xcif/regression/cpp/example_tokenize.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/example_tokenize.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/benchmarks/bench_xcif -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/benchmarks/bench_xcif.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/fuzz_target.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/fuzz_target.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/example_tokenize -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/example_tokenize.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_data_model.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_data_model.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/example_parse -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/example_parse.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_error_handling.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_error_handling.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o scitbx/sparse/tests/tst_sparse -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/sparse/tests/tst_sparse.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lboost_thread g++ -o xcif/regression/cpp/tst_infrastructure.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_infrastructure.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_infrastructure -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_infrastructure.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_mapped_file.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_mapped_file.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/fuzz_target -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/fuzz_target.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_non_strict_mode.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_non_strict_mode.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_mapped_file -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_mapped_file.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_numeric.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_numeric.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_error_handling -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_error_handling.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_quoted_string_delimiter.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_quoted_string_delimiter.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_data_model -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_data_model.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_semicolon_field_strict.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_semicolon_field_strict.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o smtbx/refinement/constraints/tests/tst_reparametrisation -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread smtbx/refinement/constraints/tests/tst_reparametrisation.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread g++ -o smtbx/refinement/constraints/tests/tst_geometrical_hydrogens -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread g++ -o smtbx/refinement/constraints/tests/tst_special_position -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread smtbx/refinement/constraints/tests/tst_special_position.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lcctbx -lsmtbx_refinement_constraints -lboost_thread g++ -o xcif/regression/cpp/tst_string_view.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_string_view.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_thread_safety.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_thread_safety.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_tokenizer.o -c -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial -DBOOST_TIMER_ENABLE_DEPRECATED=1 -std=c++14 -pthread -fPIC -fno-strict-aliasing -w -g -O0 -fno-inline -DBOOST_ALL_NO_LIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_/include -I/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/xcif/regression/cpp/tst_tokenizer.cpp cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ g++ -o xcif/regression/cpp/tst_non_strict_mode -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_non_strict_mode.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_numeric -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_numeric.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_quoted_string_delimiter -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_quoted_string_delimiter.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_semicolon_field_strict -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_semicolon_field_strict.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_string_view -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_string_view.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_tokenizer -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_tokenizer.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o xcif/regression/cpp/tst_thread_safety -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread xcif/regression/cpp/tst_thread_safety.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lxcif -lboost_thread g++ -o scitbx/array_family/tst_af_4 -rdynamic -Wl,-z,relro -lhdf5_serial -std=c++14 -pthread scitbx/array_family/tst_af_4.o -L/usr/lib -L/usr/lib64 -L/usr/lib/loongarch64-linux-gnu -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -Llib -L/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/lib -lm scons: done building targets. usr+sys time: 53.96 seconds wall clock time: 17 minutes 39.96 seconds (1059.96 seconds total) iconv -f ISO-8859-1 -t UTF-8 cctbx/eltbx/covalent_radii.h > covalent_radii.h mv covalent_radii.h cctbx/eltbx/covalent_radii.h dh_auto_build -- --name cctbx -s custom --build-args="cp -f {build_dir}_/lib/*_ext.so {build_dir}_/scitbx/array_family/boost_python/regression_test_ext.so {build_dir}" pybuild --build -i python{version} -p "3.15 3.14" --name cctbx -s custom --build-args="cp -f {build_dir}_/lib/*_ext.so {build_dir}_/scitbx/array_family/boost_python/regression_test_ext.so {build_dir}" --parallel=8 I: pybuild base:383: cp -f '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build'_/lib/*_ext.so '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build'_/scitbx/array_family/boost_python/regression_test_ext.so '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build' I: pybuild base:383: cp -f '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build'_/lib/*_ext.so '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build'_/scitbx/array_family/boost_python/regression_test_ext.so '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build' dh_auto_build -- --name cctbx -s custom --build-args="cp -f {build_dir}_/lib/dxtbx_flumpy.so {build_dir}" pybuild --build -i python{version} -p "3.15 3.14" --name cctbx -s custom --build-args="cp -f {build_dir}_/lib/dxtbx_flumpy.so {build_dir}" --parallel=8 I: pybuild base:383: cp -f '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build'_/lib/dxtbx_flumpy.so '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build' I: pybuild base:383: cp -f '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build'_/lib/dxtbx_flumpy.so '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build' make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' rm -f debian/libcctbx-dev.debhelper.log debian/libcctbx0.debhelper.log debian/python3-cctbx.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' # DOES NOT WORK, source code must be modified in order to find the expected # /usr/share/cctbx libtbx_env file during the build process make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild rm -f -- debian/libcctbx0.substvars debian/libcctbx-dev.substvars debian/python3-cctbx.substvars rm -fr -- debian/.debhelper/generated/libcctbx0/ debian/libcctbx0/ debian/tmp/ debian/.debhelper/generated/libcctbx-dev/ debian/libcctbx-dev/ debian/.debhelper/generated/python3-cctbx/ debian/python3-cctbx/ debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' # Python modules dh_auto_install -- --name cctbx install -m0755 -d /build/reproducible-path/cctbx-2026.9\+ds2\+\~3.30.1\+ds1/debian/tmp pybuild --install -i python{version} -p "3.15 3.14" --name cctbx --parallel=8 I: pybuild plugin_pyproject:199: Copying package built for python3.15 to destdir I: pybuild plugin_pyproject:199: Copying package built for python3.14 to destdir dh_auto_install --sourcedirectory=dxtbx -- --name dxtbx install -m0755 -d /build/reproducible-path/cctbx-2026.9\+ds2\+\~3.30.1\+ds1/debian/tmp pybuild --install -i python{version} -p "3.15 3.14" --name dxtbx --dir dxtbx --parallel=8 I: pybuild plugin_pyproject:199: Copying package built for python3.15 to destdir I: pybuild plugin_pyproject:199: Copying package built for python3.14 to destdir # pybuild does not set properly dest-dir when name is set. So merge both installation under debian/tmp install -d debian/tmp rsync -av --ignore-existing debian/python3-cctbx/ debian/python3-dxtbx/ debian/tmp sending incremental file list ./ usr/ usr/bin/ usr/bin/cxi.image2pickle usr/bin/cxi.image_average usr/bin/dev.dxtbx.debug_memory usr/bin/dev.dxtbx.image_availability usr/bin/dev.dxtbx.read_sequence usr/bin/dev.dxtbx.simulate_collection usr/bin/dxtbx.any2nexus usr/bin/dxtbx.depends_on usr/bin/dxtbx.detector_superpose usr/bin/dxtbx.display_parallax_correction usr/bin/dxtbx.dlsnxs2cbf usr/bin/dxtbx.image2pickle usr/bin/dxtbx.image_average usr/bin/dxtbx.install_format usr/bin/dxtbx.overload usr/bin/dxtbx.plot_detector_models usr/bin/dxtbx.print_header usr/bin/dxtbx.print_matching_images usr/bin/dxtbx.radial_average usr/bin/dxtbx.saturation usr/bin/dxtbx.show_mask_info usr/bin/dxtbx.show_matching_formats usr/bin/dxtbx.show_registry usr/lib/ usr/lib/python3.14/ usr/lib/python3.14/dist-packages/ usr/lib/python3.14/dist-packages/annlib_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_boost_thread_test_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_maximum_clique_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_metric_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_graph_utility_ext.so usr/lib/python3.14/dist-packages/boost_adaptbx_python_streambuf_test_ext.so usr/lib/python3.14/dist-packages/boost_optional_ext.so usr/lib/python3.14/dist-packages/boost_python_hybrid_times_ext.so usr/lib/python3.14/dist-packages/boost_python_meta_ext.so usr/lib/python3.14/dist-packages/boost_rational_ext.so usr/lib/python3.14/dist-packages/boost_tuple_ext.so usr/lib/python3.14/dist-packages/cbflib_ext.so usr/lib/python3.14/dist-packages/cctbx_adp_restraints_ext.so usr/lib/python3.14/dist-packages/cctbx_adptbx_ext.so usr/lib/python3.14/dist-packages/cctbx_anharmonic_ext.so usr/lib/python3.14/dist-packages/cctbx_array_family_flex_ext.so usr/lib/python3.14/dist-packages/cctbx_asymmetric_map_ext.so usr/lib/python3.14/dist-packages/cctbx_covariance_ext.so usr/lib/python3.14/dist-packages/cctbx_crystal_ext.so usr/lib/python3.14/dist-packages/cctbx_dmtbx_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_chemical_elements_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_covalent_radii_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_fp_fdp_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_henke_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_icsd_radii_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_neutron_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_sasaki_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_tiny_pse_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_wavelengths_ext.so usr/lib/python3.14/dist-packages/cctbx_eltbx_xray_scattering_ext.so usr/lib/python3.14/dist-packages/cctbx_emma_ext.so usr/lib/python3.14/dist-packages/cctbx_french_wilson_ext.so usr/lib/python3.14/dist-packages/cctbx_geometry_ext.so usr/lib/python3.14/dist-packages/cctbx_geometry_restraints_ext.so usr/lib/python3.14/dist-packages/cctbx_maptbx_bcr_bcr_ext.so usr/lib/python3.14/dist-packages/cctbx_maptbx_ext.so usr/lib/python3.14/dist-packages/cctbx_masks_ext.so usr/lib/python3.14/dist-packages/cctbx_math_ext.so usr/lib/python3.14/dist-packages/cctbx_merging_ext.so usr/lib/python3.14/dist-packages/cctbx_miller_ext.so usr/lib/python3.14/dist-packages/cctbx_multipolar_ext.so usr/lib/python3.14/dist-packages/cctbx_orientation_ext.so usr/lib/python3.14/dist-packages/cctbx_sgtbx_asu_ext.so usr/lib/python3.14/dist-packages/cctbx_sgtbx_ext.so usr/lib/python3.14/dist-packages/cctbx_statistics_ext.so usr/lib/python3.14/dist-packages/cctbx_symmetry_search_ext.so usr/lib/python3.14/dist-packages/cctbx_translation_search_ext.so usr/lib/python3.14/dist-packages/cctbx_uctbx_ext.so usr/lib/python3.14/dist-packages/cctbx_xray_ext.so usr/lib/python3.14/dist-packages/cctbx_xray_observations_ext.so usr/lib/python3.14/dist-packages/cma_es_ext.so usr/lib/python3.14/dist-packages/determine_unit_cell_ext.so usr/lib/python3.14/dist-packages/dxtbx_ext.so usr/lib/python3.14/dist-packages/dxtbx_flumpy.so usr/lib/python3.14/dist-packages/dxtbx_format_image_ext.so usr/lib/python3.14/dist-packages/dxtbx_format_nexus_ext.so usr/lib/python3.14/dist-packages/dxtbx_imageset_ext.so usr/lib/python3.14/dist-packages/dxtbx_masking_ext.so usr/lib/python3.14/dist-packages/dxtbx_model_ext.so usr/lib/python3.14/dist-packages/fable_ext.so usr/lib/python3.14/dist-packages/gltbx_fonts_ext.so usr/lib/python3.14/dist-packages/gltbx_gl_ext.so usr/lib/python3.14/dist-packages/gltbx_glu_ext.so usr/lib/python3.14/dist-packages/gltbx_quadrics_ext.so usr/lib/python3.14/dist-packages/gltbx_util_ext.so usr/lib/python3.14/dist-packages/gltbx_viewer_utils_ext.so usr/lib/python3.14/dist-packages/iotbx_ccp4_map_ext.so usr/lib/python3.14/dist-packages/iotbx_cif_ext.so usr/lib/python3.14/dist-packages/iotbx_detectors_bruker_ext.so usr/lib/python3.14/dist-packages/iotbx_detectors_ext.so usr/lib/python3.14/dist-packages/iotbx_dsn6_map_ext.so usr/lib/python3.14/dist-packages/iotbx_dtrek_ext.so usr/lib/python3.14/dist-packages/iotbx_mtz_ext.so usr/lib/python3.14/dist-packages/iotbx_pdb_ext.so usr/lib/python3.14/dist-packages/iotbx_pdb_hierarchy_ext.so usr/lib/python3.14/dist-packages/iotbx_scalepack_ext.so usr/lib/python3.14/dist-packages/iotbx_shelx_ext.so usr/lib/python3.14/dist-packages/iotbx_wildcard_ext.so usr/lib/python3.14/dist-packages/iotbx_xplor_ext.so usr/lib/python3.14/dist-packages/mmtbx_alignment_ext.so usr/lib/python3.14/dist-packages/mmtbx_building_loop_closure_ext.so usr/lib/python3.14/dist-packages/mmtbx_bulk_solvent_ext.so usr/lib/python3.14/dist-packages/mmtbx_den_restraints_ext.so usr/lib/python3.14/dist-packages/mmtbx_dssp_ext.so usr/lib/python3.14/dist-packages/mmtbx_dynamics_ext.so usr/lib/python3.14/dist-packages/mmtbx_f_model_ext.so usr/lib/python3.14/dist-packages/mmtbx_geometry_asa_ext.so usr/lib/python3.14/dist-packages/mmtbx_geometry_clash_ext.so usr/lib/python3.14/dist-packages/mmtbx_geometry_indexing_ext.so usr/lib/python3.14/dist-packages/mmtbx_geometry_primitive_ext.so usr/lib/python3.14/dist-packages/mmtbx_geometry_shared_types_ext.so usr/lib/python3.14/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.so usr/lib/python3.14/dist-packages/mmtbx_hydrogens_ext.so usr/lib/python3.14/dist-packages/mmtbx_masks_ext.so usr/lib/python3.14/dist-packages/mmtbx_max_lik_ext.so usr/lib/python3.14/dist-packages/mmtbx_mosaic_ext.so usr/lib/python3.14/dist-packages/mmtbx_ncs_cartesian_restraints_ext.so usr/lib/python3.14/dist-packages/mmtbx_ncs_ext.so usr/lib/python3.14/dist-packages/mmtbx_pair_interaction_ext.so usr/lib/python3.14/dist-packages/mmtbx_probe_ext.so usr/lib/python3.14/dist-packages/mmtbx_ramachandran_restraints_ext.so usr/lib/python3.14/dist-packages/mmtbx_reduce_ext.so usr/lib/python3.14/dist-packages/mmtbx_reference_coordinate_ext.so usr/lib/python3.14/dist-packages/mmtbx_rotamer_fit_ext.so usr/lib/python3.14/dist-packages/mmtbx_rsr_ext.so usr/lib/python3.14/dist-packages/mmtbx_scaling_ext.so usr/lib/python3.14/dist-packages/mmtbx_secondary_structure_ext.so usr/lib/python3.14/dist-packages/mmtbx_tls_decompose_ext.so usr/lib/python3.14/dist-packages/mmtbx_tls_ext.so usr/lib/python3.14/dist-packages/mmtbx_tls_optimise_amplitudes_ext.so usr/lib/python3.14/dist-packages/mmtbx_tls_utils_ext.so usr/lib/python3.14/dist-packages/mmtbx_utils_ext.so usr/lib/python3.14/dist-packages/mmtbx_validation_ramachandran_ext.so usr/lib/python3.14/dist-packages/omptbx_ext.so usr/lib/python3.14/dist-packages/regression_test_ext.so usr/lib/python3.14/dist-packages/rstbx_array_family_flex_ext.so usr/lib/python3.14/dist-packages/rstbx_bandpass_ext.so usr/lib/python3.14/dist-packages/rstbx_bpcx_detector_model_ext.so usr/lib/python3.14/dist-packages/rstbx_diffraction_fastbragg_ext.so usr/lib/python3.14/dist-packages/rstbx_ext.so usr/lib/python3.14/dist-packages/rstbx_indexing_api_ext.so usr/lib/python3.14/dist-packages/rstbx_integration_ext.so usr/lib/python3.14/dist-packages/rstbx_simage_ext.so usr/lib/python3.14/dist-packages/rstbx_simulation_ext.so usr/lib/python3.14/dist-packages/rstbx_symmetry_constraints_ext.so usr/lib/python3.14/dist-packages/scitbx_array_family_flex_ext.so usr/lib/python3.14/dist-packages/scitbx_array_family_shared_ext.so usr/lib/python3.14/dist-packages/scitbx_cubicle_neighbors_ext.so usr/lib/python3.14/dist-packages/scitbx_fftpack_ext.so usr/lib/python3.14/dist-packages/scitbx_glmtbx_ext.so usr/lib/python3.14/dist-packages/scitbx_graphics_utils_ext.so usr/lib/python3.14/dist-packages/scitbx_iso_surface_ext.so usr/lib/python3.14/dist-packages/scitbx_lbfgs_ext.so usr/lib/python3.14/dist-packages/scitbx_lbfgsb_ext.so usr/lib/python3.14/dist-packages/scitbx_linalg_ext.so usr/lib/python3.14/dist-packages/scitbx_lstbx_normal_equations_ext.so usr/lib/python3.14/dist-packages/scitbx_math_ext.so usr/lib/python3.14/dist-packages/scitbx_minpack_ext.so usr/lib/python3.14/dist-packages/scitbx_r3_utils_ext.so usr/lib/python3.14/dist-packages/scitbx_random_ext.so usr/lib/python3.14/dist-packages/scitbx_rigid_body_ext.so usr/lib/python3.14/dist-packages/scitbx_sparse_ext.so usr/lib/python3.14/dist-packages/scitbx_stl_map_ext.so usr/lib/python3.14/dist-packages/scitbx_stl_set_ext.so usr/lib/python3.14/dist-packages/scitbx_stl_vector_ext.so usr/lib/python3.14/dist-packages/scitbx_suffixtree_shared_ext.so usr/lib/python3.14/dist-packages/scitbx_suffixtree_single_ext.so usr/lib/python3.14/dist-packages/scitbx_wigner_ext.so usr/lib/python3.14/dist-packages/smtbx_ab_initio_ext.so usr/lib/python3.14/dist-packages/smtbx_array_family_ext.so usr/lib/python3.14/dist-packages/smtbx_refinement_constraints_ext.so usr/lib/python3.14/dist-packages/smtbx_refinement_least_squares_ext.so usr/lib/python3.14/dist-packages/smtbx_refinement_restraints_ext.so usr/lib/python3.14/dist-packages/smtbx_stl_map_ext.so usr/lib/python3.14/dist-packages/smtbx_structure_factors_direct_ext.so usr/lib/python3.14/dist-packages/spotfinder_array_family_flex_ext.so usr/lib/python3.14/dist-packages/spotfinder_distltbx_ext.so usr/lib/python3.14/dist-packages/spotfinder_dxtbx_ext.so usr/lib/python3.14/dist-packages/spotfinder_hough_ext.so usr/lib/python3.14/dist-packages/std_pair_ext.so usr/lib/python3.14/dist-packages/xcif_ext.so usr/lib/python3.14/dist-packages/annlib_adaptbx/ usr/lib/python3.14/dist-packages/annlib_adaptbx/__init__.py usr/lib/python3.14/dist-packages/annlib_adaptbx/run_tests.py usr/lib/python3.14/dist-packages/annlib_adaptbx/annlib_adaptbx/ usr/lib/python3.14/dist-packages/annlib_adaptbx/annlib_adaptbx/__init__.py usr/lib/python3.14/dist-packages/annlib_adaptbx/annlib_adaptbx/sample.py usr/lib/python3.14/dist-packages/annlib_adaptbx/annlib_adaptbx/self_match.py usr/lib/python3.14/dist-packages/annlib_adaptbx/source_generators/ usr/lib/python3.14/dist-packages/annlib_adaptbx/source_generators/__init__.py usr/lib/python3.14/dist-packages/annlib_adaptbx/source_generators/generate_all.py usr/lib/python3.14/dist-packages/boost_adaptbx/ usr/lib/python3.14/dist-packages/boost_adaptbx/__init__.py usr/lib/python3.14/dist-packages/boost_adaptbx/hybrid_times.py usr/lib/python3.14/dist-packages/boost_adaptbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/boost_adaptbx/run_tests.py usr/lib/python3.14/dist-packages/boost_adaptbx/boost/ usr/lib/python3.14/dist-packages/boost_adaptbx/boost/__init__.py usr/lib/python3.14/dist-packages/boost_adaptbx/boost/optional.py usr/lib/python3.14/dist-packages/boost_adaptbx/boost/python.py usr/lib/python3.14/dist-packages/boost_adaptbx/boost/rational.py usr/lib/python3.14/dist-packages/boost_adaptbx/boost/std_pair.py usr/lib/python3.14/dist-packages/boost_adaptbx/boost/tuple.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/ usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/__init__.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/divide_by_zero.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/double_overflow.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/gcd.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/inexact.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/int_overflow.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/lcm.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/segmentation_fault.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/show_environ_usage.py usr/lib/python3.14/dist-packages/boost_adaptbx/command_line/show_platform_info.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/ usr/lib/python3.14/dist-packages/boost_adaptbx/graph/__init__.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/breadth_first_search.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/clustering_algorithm.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/connected_component_algorithm.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/graph_structure_comparison.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/maximum_clique.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/metric.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/min_cut_max_flow.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/minimum_cut_enumerate.py usr/lib/python3.14/dist-packages/boost_adaptbx/graph/utility.py usr/lib/python3.14/dist-packages/cbflib_adaptbx/ usr/lib/python3.14/dist-packages/cbflib_adaptbx/__init__.py usr/lib/python3.14/dist-packages/cbflib_adaptbx/copy_files.py usr/lib/python3.14/dist-packages/cbflib_adaptbx/exercise_compression.py usr/lib/python3.14/dist-packages/cbflib_adaptbx/run_tests.py usr/lib/python3.14/dist-packages/cbflib_adaptbx/command_line/ usr/lib/python3.14/dist-packages/cbflib_adaptbx/command_line/__init__.py usr/lib/python3.14/dist-packages/cbflib_adaptbx/command_line/dump.py usr/lib/python3.14/dist-packages/ccp4io_adaptbx/ usr/lib/python3.14/dist-packages/ccp4io_adaptbx/__init__.py usr/lib/python3.14/dist-packages/ccp4io_adaptbx/copy_files.py usr/lib/python3.14/dist-packages/ccp4io_adaptbx/tst.py usr/lib/python3.14/dist-packages/cctbx-2023.12.dist-info/ usr/lib/python3.14/dist-packages/cctbx-2023.12.dist-info/METADATA usr/lib/python3.14/dist-packages/cctbx-2023.12.dist-info/RECORD usr/lib/python3.14/dist-packages/cctbx-2023.12.dist-info/WHEEL usr/lib/python3.14/dist-packages/cctbx-2023.12.dist-info/top_level.txt usr/lib/python3.14/dist-packages/cctbx-2023.12.dist-info/licenses/ usr/lib/python3.14/dist-packages/cctbx-2023.12.dist-info/licenses/LICENSE.txt usr/lib/python3.14/dist-packages/cctbx/ usr/lib/python3.14/dist-packages/cctbx/__init__.py usr/lib/python3.14/dist-packages/cctbx/adptbx.py usr/lib/python3.14/dist-packages/cctbx/anharmonic.py usr/lib/python3.14/dist-packages/cctbx/crystal_orientation.py usr/lib/python3.14/dist-packages/cctbx/dmtbx.py usr/lib/python3.14/dist-packages/cctbx/euclidean_model_matching.py usr/lib/python3.14/dist-packages/cctbx/french_wilson.py usr/lib/python3.14/dist-packages/cctbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/cctbx/math_module.py usr/lib/python3.14/dist-packages/cctbx/multipolar.py usr/lib/python3.14/dist-packages/cctbx/r_free_utils.py usr/lib/python3.14/dist-packages/cctbx/run_examples.py usr/lib/python3.14/dist-packages/cctbx/run_tests.py usr/lib/python3.14/dist-packages/cctbx/statistics.py usr/lib/python3.14/dist-packages/cctbx/symmetry_search.py usr/lib/python3.14/dist-packages/cctbx/translation_search.py usr/lib/python3.14/dist-packages/cctbx/adp_restraints/ usr/lib/python3.14/dist-packages/cctbx/adp_restraints/__init__.py usr/lib/python3.14/dist-packages/cctbx/adp_restraints/energies.py usr/lib/python3.14/dist-packages/cctbx/adp_restraints/flags.py usr/lib/python3.14/dist-packages/cctbx/adp_restraints/tst_ext.py usr/lib/python3.14/dist-packages/cctbx/array_family/ usr/lib/python3.14/dist-packages/cctbx/array_family/__init__.py usr/lib/python3.14/dist-packages/cctbx/array_family/flex.py usr/lib/python3.14/dist-packages/cctbx/command_line/ usr/lib/python3.14/dist-packages/cctbx/command_line/__init__.py usr/lib/python3.14/dist-packages/cctbx/command_line/auto_sharpen.py usr/lib/python3.14/dist-packages/cctbx/command_line/brehm_diederichs.py usr/lib/python3.14/dist-packages/cctbx/command_line/cctbx_test_nightly.py usr/lib/python3.14/dist-packages/cctbx/command_line/cod_select_and_pickle.py usr/lib/python3.14/dist-packages/cctbx/command_line/diffuse.py usr/lib/python3.14/dist-packages/cctbx/command_line/eltbx.show_fp_fdp.py usr/lib/python3.14/dist-packages/cctbx/command_line/euclidean_model_matching.py usr/lib/python3.14/dist-packages/cctbx/command_line/find_reticular_twin_laws.py usr/lib/python3.14/dist-packages/cctbx/command_line/form_factor_query.py usr/lib/python3.14/dist-packages/cctbx/command_line/precession_view.py usr/lib/python3.14/dist-packages/cctbx/command_line/qscore.py usr/lib/python3.14/dist-packages/cctbx/command_line/samosa_join.py usr/lib/python3.14/dist-packages/cctbx/command_line/samosa_scale.py usr/lib/python3.14/dist-packages/cctbx/command_line/segment_and_split_map.py usr/lib/python3.14/dist-packages/cctbx/command_line/space_group_info.py usr/lib/python3.14/dist-packages/cctbx/command_line/structure_factor_timings.py usr/lib/python3.14/dist-packages/cctbx/command_line/subgroups.py usr/lib/python3.14/dist-packages/cctbx/command_line/version.py usr/lib/python3.14/dist-packages/cctbx/command_line/wavelength_units.py usr/lib/python3.14/dist-packages/cctbx/covariance/ usr/lib/python3.14/dist-packages/cctbx/covariance/__init__.py usr/lib/python3.14/dist-packages/cctbx/crystal/ usr/lib/python3.14/dist-packages/cctbx/crystal/__init__.py usr/lib/python3.14/dist-packages/cctbx/crystal/burzlaff_zimmermann_dewolff.py usr/lib/python3.14/dist-packages/cctbx/crystal/close_packing.py usr/lib/python3.14/dist-packages/cctbx/crystal/coordination_sequences.py usr/lib/python3.14/dist-packages/cctbx/crystal/direct_space_asu.py usr/lib/python3.14/dist-packages/cctbx/crystal/distance_based_connectivity.py usr/lib/python3.14/dist-packages/cctbx/crystal/find_best_cell.py usr/lib/python3.14/dist-packages/cctbx/crystal/reindex.py usr/lib/python3.14/dist-packages/cctbx/crystal/super_cell.py usr/lib/python3.14/dist-packages/cctbx/crystal/tst_distance_based_connectivity.py usr/lib/python3.14/dist-packages/cctbx/crystal/tst_ext.py usr/lib/python3.14/dist-packages/cctbx/crystal/tst_super_cell.py usr/lib/python3.14/dist-packages/cctbx/development/ usr/lib/python3.14/dist-packages/cctbx/development/__init__.py usr/lib/python3.14/dist-packages/cctbx/development/approx_amplitude_vs_resolution.py usr/lib/python3.14/dist-packages/cctbx/development/cns_density_modification.py usr/lib/python3.14/dist-packages/cctbx/development/create_models_or_maps.py usr/lib/python3.14/dist-packages/cctbx/development/debug_utils.py usr/lib/python3.14/dist-packages/cctbx/development/direct_or_fft.py usr/lib/python3.14/dist-packages/cctbx/development/electron_density_sampling.py usr/lib/python3.14/dist-packages/cctbx/development/fmt_utils.py usr/lib/python3.14/dist-packages/cctbx/development/github.py usr/lib/python3.14/dist-packages/cctbx/development/make_cns_input.py usr/lib/python3.14/dist-packages/cctbx/development/make_settings.py usr/lib/python3.14/dist-packages/cctbx/development/random_structure.py usr/lib/python3.14/dist-packages/cctbx/development/run_shelx.py usr/lib/python3.14/dist-packages/cctbx/development/run_shelx76.py usr/lib/python3.14/dist-packages/cctbx/development/space_group_option_parser.py usr/lib/python3.14/dist-packages/cctbx/development/structure_factor_utils.py usr/lib/python3.14/dist-packages/cctbx/development/tst_cns_epsilon.py usr/lib/python3.14/dist-packages/cctbx/development/tst_cns_hl.py usr/lib/python3.14/dist-packages/cctbx/eltbx/ usr/lib/python3.14/dist-packages/cctbx/eltbx/__init__.py usr/lib/python3.14/dist-packages/cctbx/eltbx/attenuation_coefficient.py usr/lib/python3.14/dist-packages/cctbx/eltbx/chemical_elements.py usr/lib/python3.14/dist-packages/cctbx/eltbx/covalent_radii.py usr/lib/python3.14/dist-packages/cctbx/eltbx/distance_based_connectivity.py usr/lib/python3.14/dist-packages/cctbx/eltbx/e_scattering.py usr/lib/python3.14/dist-packages/cctbx/eltbx/formula.py usr/lib/python3.14/dist-packages/cctbx/eltbx/fp_fdp.py usr/lib/python3.14/dist-packages/cctbx/eltbx/gaussian_fit.py usr/lib/python3.14/dist-packages/cctbx/eltbx/henke.py usr/lib/python3.14/dist-packages/cctbx/eltbx/icsd_radii.py usr/lib/python3.14/dist-packages/cctbx/eltbx/neutron.py usr/lib/python3.14/dist-packages/cctbx/eltbx/read_custom_scattering_dict.py usr/lib/python3.14/dist-packages/cctbx/eltbx/sasaki.py usr/lib/python3.14/dist-packages/cctbx/eltbx/tiny_pse.py usr/lib/python3.14/dist-packages/cctbx/eltbx/van_der_waals_radii.py usr/lib/python3.14/dist-packages/cctbx/eltbx/wavelengths.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/ usr/lib/python3.14/dist-packages/cctbx/eltbx/development/__init__.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/combine_fits.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/create_n_gaussian_raw_cpp.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/e_scattering_plots.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/format_gaussian_fits.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/hydrogen_plots.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/itvc_approx.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/itvc_cross_validation.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/itvc_fits.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/itvc_kissel.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/itvc_section61_io.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/kissel_fits.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/kissel_io.py usr/lib/python3.14/dist-packages/cctbx/eltbx/development/rez_rez_grant.py usr/lib/python3.14/dist-packages/cctbx/eltbx/xray_scattering/ usr/lib/python3.14/dist-packages/cctbx/eltbx/xray_scattering/__init__.py usr/lib/python3.14/dist-packages/cctbx/examples/ usr/lib/python3.14/dist-packages/cctbx/examples/__init__.py usr/lib/python3.14/dist-packages/cctbx/examples/adp_symmetry_constraints.py usr/lib/python3.14/dist-packages/cctbx/examples/all_axes.py usr/lib/python3.14/dist-packages/cctbx/examples/analyze_adp.py usr/lib/python3.14/dist-packages/cctbx/examples/ccp4_map.py usr/lib/python3.14/dist-packages/cctbx/examples/change_hand_p31.py usr/lib/python3.14/dist-packages/cctbx/examples/convert_ccp4_symop_lib.py usr/lib/python3.14/dist-packages/cctbx/examples/cr2o3_consistency_checks.py usr/lib/python3.14/dist-packages/cctbx/examples/cr2o3_primitive_cell.py usr/lib/python3.14/dist-packages/cctbx/examples/exp_i_alpha_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/f_model_example.py usr/lib/python3.14/dist-packages/cctbx/examples/fft_map_electron_density_around_atom.py usr/lib/python3.14/dist-packages/cctbx/examples/find_distances_using_cpp_objects.py usr/lib/python3.14/dist-packages/cctbx/examples/find_sys_abs_equiv_space_groups.py usr/lib/python3.14/dist-packages/cctbx/examples/g_exp_i_alpha_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/g_exp_i_partial_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/getting_started.py usr/lib/python3.14/dist-packages/cctbx/examples/hirshfeld_test.py usr/lib/python3.14/dist-packages/cctbx/examples/le_page_1982_vs_lebedev_2005.py usr/lib/python3.14/dist-packages/cctbx/examples/lebedev_2005_perturbation.py usr/lib/python3.14/dist-packages/cctbx/examples/list_non_principal_continuous_shifts.py usr/lib/python3.14/dist-packages/cctbx/examples/location_part.py usr/lib/python3.14/dist-packages/cctbx/examples/map_skewness.py usr/lib/python3.14/dist-packages/cctbx/examples/maximum_subgroups.py usr/lib/python3.14/dist-packages/cctbx/examples/miller_common_sets.py usr/lib/python3.14/dist-packages/cctbx/examples/miller_transform.py usr/lib/python3.14/dist-packages/cctbx/examples/neutron_structure_factors.py usr/lib/python3.14/dist-packages/cctbx/examples/phase_o_phrenia.py usr/lib/python3.14/dist-packages/cctbx/examples/quartz_structure.py usr/lib/python3.14/dist-packages/cctbx/examples/random_f_calc.py usr/lib/python3.14/dist-packages/cctbx/examples/random_puckers.py usr/lib/python3.14/dist-packages/cctbx/examples/reduced_cell_two_folds.py usr/lib/python3.14/dist-packages/cctbx/examples/site_symmetry_constraints.py usr/lib/python3.14/dist-packages/cctbx/examples/site_symmetry_table.py usr/lib/python3.14/dist-packages/cctbx/examples/space_group_matrices.py usr/lib/python3.14/dist-packages/cctbx/examples/space_subgroups.py usr/lib/python3.14/dist-packages/cctbx/examples/steve_collins.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_derivatives_2.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_derivatives_3.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_derivatives_4.py usr/lib/python3.14/dist-packages/cctbx/examples/sub_group_graph.py usr/lib/python3.14/dist-packages/cctbx/examples/symops_530.py usr/lib/python3.14/dist-packages/cctbx/examples/trigonal_r_vs_tetragonal_i.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_exp_i_alpha_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_g_exp_i_alpha_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_phase_o_phrenia.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_space_subgroups.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_structure_factor_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_structure_factor_derivatives_2.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_structure_factor_derivatives_3.py usr/lib/python3.14/dist-packages/cctbx/examples/tst_structure_factor_derivatives_4.py usr/lib/python3.14/dist-packages/cctbx/examples/unit_cell_minimizers.py usr/lib/python3.14/dist-packages/cctbx/examples/unit_cell_refinement.py usr/lib/python3.14/dist-packages/cctbx/examples/view_fft_map.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/ usr/lib/python3.14/dist-packages/cctbx/examples/merging/__init__.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/data_subset.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/data_utilities.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/show_results.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/sigma_correction.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/task4.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/test1.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/test_cc_half.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/test_levenberg_sparse.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/tst_permutations.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/samosa/ usr/lib/python3.14/dist-packages/cctbx/examples/merging/samosa/__init__.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/samosa/join.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/samosa/per_lattice_postrefinement.py usr/lib/python3.14/dist-packages/cctbx/examples/merging/samosa/scale.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_calculus/ usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_calculus/__init__.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_calculus/site_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_calculus/sites_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py usr/lib/python3.14/dist-packages/cctbx/examples/structure_factor_calculus/u_star_derivatives.py usr/lib/python3.14/dist-packages/cctbx/geometry/ usr/lib/python3.14/dist-packages/cctbx/geometry/__init__.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/ usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/__init__.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/auto_linking_types.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/base_geometry.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/distance_least_squares.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/energies.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/flags.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/lbfgs.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/linking_class.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/manager.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/process_nonbonded_proxies.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/standard_cif_links.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/tst_angle_derivs.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/tst_ext.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/tst_motif.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py usr/lib/python3.14/dist-packages/cctbx/geometry_restraints/tst_proxy_registry.py usr/lib/python3.14/dist-packages/cctbx/macro_mol/ usr/lib/python3.14/dist-packages/cctbx/macro_mol/__init__.py usr/lib/python3.14/dist-packages/cctbx/macro_mol/rotation_parameters.py usr/lib/python3.14/dist-packages/cctbx/maptbx/ usr/lib/python3.14/dist-packages/cctbx/maptbx/__init__.py usr/lib/python3.14/dist-packages/cctbx/maptbx/auto_sharpen.py usr/lib/python3.14/dist-packages/cctbx/maptbx/box.py usr/lib/python3.14/dist-packages/cctbx/maptbx/fsc_curve.py usr/lib/python3.14/dist-packages/cctbx/maptbx/map_symmetry.py usr/lib/python3.14/dist-packages/cctbx/maptbx/mask.py usr/lib/python3.14/dist-packages/cctbx/maptbx/mem.py usr/lib/python3.14/dist-packages/cctbx/maptbx/minimization.py usr/lib/python3.14/dist-packages/cctbx/maptbx/prepare_map_for_docking.py usr/lib/python3.14/dist-packages/cctbx/maptbx/prepare_map_for_refinement.py usr/lib/python3.14/dist-packages/cctbx/maptbx/qscore.py usr/lib/python3.14/dist-packages/cctbx/maptbx/real_space_refinement_simple.py usr/lib/python3.14/dist-packages/cctbx/maptbx/refine_scales_errors.py usr/lib/python3.14/dist-packages/cctbx/maptbx/refine_sharpening.py usr/lib/python3.14/dist-packages/cctbx/maptbx/resolution_from_map_and_model.py usr/lib/python3.14/dist-packages/cctbx/maptbx/segment_and_split_map.py usr/lib/python3.14/dist-packages/cctbx/maptbx/servalcat_difference_map.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_MapPeakLocator.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_asymmetric_map.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_atom_curves.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_bcr.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_ccp.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_get_percentile_cutoffs.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_interpolation.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_interpolation_2.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_loft.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_map_peak_3d_as_2d.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_mask.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_peak_volume_estimate.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_qscore.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_real_space_refinement_simple.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_resolution_from_map_and_model.py usr/lib/python3.14/dist-packages/cctbx/maptbx/tst_target_and_gradients.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/ usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/__init__.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/bcr.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/compute_tables.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/qmap.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_adp_refine.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_example.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_qmap_02.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_table.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_two_atoms.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_vrm.py usr/lib/python3.14/dist-packages/cctbx/maptbx/bcr/tst_vrm2.py usr/lib/python3.14/dist-packages/cctbx/masks/ usr/lib/python3.14/dist-packages/cctbx/masks/__init__.py usr/lib/python3.14/dist-packages/cctbx/merging/ usr/lib/python3.14/dist-packages/cctbx/merging/__init__.py usr/lib/python3.14/dist-packages/cctbx/merging/brehm_diederichs.py usr/lib/python3.14/dist-packages/cctbx/miller/ usr/lib/python3.14/dist-packages/cctbx/miller/__init__.py usr/lib/python3.14/dist-packages/cctbx/miller/display.py usr/lib/python3.14/dist-packages/cctbx/miller/reindexing.py usr/lib/python3.14/dist-packages/cctbx/miller/tst_map_to_asu_isym.py usr/lib/python3.14/dist-packages/cctbx/miller/tst_reindexing.py usr/lib/python3.14/dist-packages/cctbx/neutron/ usr/lib/python3.14/dist-packages/cctbx/neutron/__init__.py usr/lib/python3.14/dist-packages/cctbx/omz/ usr/lib/python3.14/dist-packages/cctbx/omz/__init__.py usr/lib/python3.14/dist-packages/cctbx/omz/bfgs.py usr/lib/python3.14/dist-packages/cctbx/omz/cif_refine.py usr/lib/python3.14/dist-packages/cctbx/omz/cod_refine.py usr/lib/python3.14/dist-packages/cctbx/omz/cod_select_and_pickle.py usr/lib/python3.14/dist-packages/cctbx/omz/dev.py usr/lib/python3.14/dist-packages/cctbx/omz/eval_iso_vs_refined.py usr/lib/python3.14/dist-packages/cctbx/omz/pdb_dev.py usr/lib/python3.14/dist-packages/cctbx/omz/tardy_adaptor.py usr/lib/python3.14/dist-packages/cctbx/omz/tst_bfgs.py usr/lib/python3.14/dist-packages/cctbx/omz/tst_dev.py usr/lib/python3.14/dist-packages/cctbx/regression/ usr/lib/python3.14/dist-packages/cctbx/regression/__init__.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_adp_aniso_restraints.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_adp_constraints.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_adp_constraints_cartesian.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_amplitude_normalisation.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_change_basis.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_connectivity.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_connectivity_allsym.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_coordination_sequences.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_create_models_or_maps.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_crystal.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_crystal_asu_clusters.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_crystal_close_packing.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_diffuse.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_direct_scaling.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_direct_space_asu.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_emma.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_expand_to_p1.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_f_model.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_fast_nv1995.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_fcalc_fft_stability.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_find_best_cell.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_fourier_transform_real_part_at_x.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_french_wilson.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_geometry_restraints.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_geometry_restraints_2.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_geometry_restraints_lbfgs.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_grm_modifications.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_grm_modifications_rm.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_grm_pickling.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_grouped_data.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_krivy_gruber.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_loc_res.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_map_is_periodic.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_map_weights_for_symmetry_summation.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_maptbx_box.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_maptbx_mask.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_maptbx_structure_factors.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_match_bijvoet_mates.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_math_module.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_mem.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_mem_2.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller_data_manipulation.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller_double_step_filtration.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller_fft_map.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller_lookup_utils.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller_merge_equivalents.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_miller_statistics.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_niggli_reduction_cpp.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_pair_asu_table.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_pointgroup_tools.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_prepare_map_for_docking.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_r_free_utils.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_reciprocal_space_asu.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_refine_xray_curvs.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_reflection_statistics.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sampled_model_density.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sf_low_res_accuracy.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_denominators.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_harker.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_lattice_symmetry.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_site_constraints.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_special_op_simplifier.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_subgroups.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sgtbx_tidy_pickling.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_show_cosets.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_sphericity.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_statistics_graphs.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_triplet_generator.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_twin_target.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_wavelength_units.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_web_change_basis.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_weighting_schemes.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_wilson_plot.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_xray.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_xray_derivatives.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_xray_fast_gradients.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_xray_minimization.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_xray_minimization_failure.py usr/lib/python3.14/dist-packages/cctbx/regression/tst_xray_target_functors.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/ usr/lib/python3.14/dist-packages/cctbx/sgtbx/__init__.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/bravais_types.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/cosets.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/harker.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/lattice_symmetry.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/literal_description.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/plane_groups.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/pointgroup_tools.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/rational_matrices_point_groups.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/reticular_pg_tools.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/reticular_twin_laws.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/show_cosets.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/sub_lattice_tools.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/subgroups.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/symbol_confidence.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/sys_abs_equiv.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/ usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/__init__.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/check_redundancies.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/cut_plane.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/facet_analysis.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/reference_table.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/short_cuts.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/proto/ usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/proto/__init__.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py usr/lib/python3.14/dist-packages/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py usr/lib/python3.14/dist-packages/cctbx/source_generators/ usr/lib/python3.14/dist-packages/cctbx/source_generators/__init__.py usr/lib/python3.14/dist-packages/cctbx/source_generators/flex_fwd_h.py usr/lib/python3.14/dist-packages/cctbx/source_generators/eltbx/ usr/lib/python3.14/dist-packages/cctbx/source_generators/eltbx/__init__.py usr/lib/python3.14/dist-packages/cctbx/source_generators/eltbx/generate_henke_cpp.py usr/lib/python3.14/dist-packages/cctbx/source_generators/eltbx/generate_sasaki_cpp.py usr/lib/python3.14/dist-packages/cctbx/uctbx/ usr/lib/python3.14/dist-packages/cctbx/uctbx/__init__.py usr/lib/python3.14/dist-packages/cctbx/uctbx/gruber_1973.py usr/lib/python3.14/dist-packages/cctbx/uctbx/gruber_1973_table_1.py usr/lib/python3.14/dist-packages/cctbx/uctbx/krivy_gruber_1976.py usr/lib/python3.14/dist-packages/cctbx/uctbx/reduction_base.py usr/lib/python3.14/dist-packages/cctbx/uctbx/determine_unit_cell/ usr/lib/python3.14/dist-packages/cctbx/uctbx/determine_unit_cell/__init__.py usr/lib/python3.14/dist-packages/cctbx/web/ usr/lib/python3.14/dist-packages/cctbx/web/__init__.py usr/lib/python3.14/dist-packages/cctbx/web/all_axes.py usr/lib/python3.14/dist-packages/cctbx/web/browse_settings.py usr/lib/python3.14/dist-packages/cctbx/web/cgi_utils.py usr/lib/python3.14/dist-packages/cctbx/web/change_basis.py usr/lib/python3.14/dist-packages/cctbx/web/change_hand.py usr/lib/python3.14/dist-packages/cctbx/web/change_setting.py usr/lib/python3.14/dist-packages/cctbx/web/dispatcher.py usr/lib/python3.14/dist-packages/cctbx/web/emma.py usr/lib/python3.14/dist-packages/cctbx/web/explore_symmetry.py usr/lib/python3.14/dist-packages/cctbx/web/frac_cart.py usr/lib/python3.14/dist-packages/cctbx/web/io_utils.py usr/lib/python3.14/dist-packages/cctbx/web/iotbx_cif_validate.py usr/lib/python3.14/dist-packages/cctbx/web/lattice_symmetry.py usr/lib/python3.14/dist-packages/cctbx/web/libtbx_help.py usr/lib/python3.14/dist-packages/cctbx/web/multiple_cell.py usr/lib/python3.14/dist-packages/cctbx/web/phase_o_phrenia.py usr/lib/python3.14/dist-packages/cctbx/web/replay.py usr/lib/python3.14/dist-packages/cctbx/web/shelx.py usr/lib/python3.14/dist-packages/cctbx/web/structure_factors.py usr/lib/python3.14/dist-packages/cctbx/web/structure_factors_pdb.py usr/lib/python3.14/dist-packages/cctbx/web/wyckoff.py usr/lib/python3.14/dist-packages/cctbx/web/asu_gallery/ usr/lib/python3.14/dist-packages/cctbx/web/asu_gallery/__init__.py usr/lib/python3.14/dist-packages/cctbx/web/asu_gallery/guide_to_notation.py usr/lib/python3.14/dist-packages/cctbx/web/asu_gallery/jv_asu.py usr/lib/python3.14/dist-packages/cctbx/web/asu_gallery/jv_index.py usr/lib/python3.14/dist-packages/cctbx/web/asu_gallery/jvx.py usr/lib/python3.14/dist-packages/cctbx/web/asu_gallery/web_links.py usr/lib/python3.14/dist-packages/cctbx/xray/ usr/lib/python3.14/dist-packages/cctbx/xray/__init__.py usr/lib/python3.14/dist-packages/cctbx/xray/ext.py usr/lib/python3.14/dist-packages/cctbx/xray/minimization.py usr/lib/python3.14/dist-packages/cctbx/xray/observation_types.py usr/lib/python3.14/dist-packages/cctbx/xray/scatterer.py usr/lib/python3.14/dist-packages/cctbx/xray/structure.py usr/lib/python3.14/dist-packages/cctbx/xray/target_functors.py usr/lib/python3.14/dist-packages/cctbx/xray/weighting_schemes.py usr/lib/python3.14/dist-packages/cctbx/xray/observations/ usr/lib/python3.14/dist-packages/cctbx/xray/observations/__init__.py usr/lib/python3.14/dist-packages/cctbx/xray/observations/tst_observations.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/ usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/__init__.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/algorithm.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/from_scatterers.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/from_scatterers_direct.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/from_scatterers_direct_parallel.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/from_scatterers_fft.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/global_counters.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/gradient_flags.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/gradients.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/gradients_base.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/gradients_direct.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/gradients_fft.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/manager.py usr/lib/python3.14/dist-packages/cctbx/xray/structure_factors/misc.py usr/lib/python3.14/dist-packages/cctbx/xray/targets/ usr/lib/python3.14/dist-packages/cctbx/xray/targets/__init__.py usr/lib/python3.14/dist-packages/cctbx/xray/targets/r1.py usr/lib/python3.14/dist-packages/cctbx/xray/targets/tst_r1.py usr/lib/python3.14/dist-packages/cctbx/xray/targets/tst_shelxl_wght_ls.py usr/lib/python3.14/dist-packages/cctbx_website/ usr/lib/python3.14/dist-packages/cctbx_website/__init__.py usr/lib/python3.14/dist-packages/cctbx_website/libtbx_refresh.py usr/lib/python3.14/dist-packages/cctbx_website/run_tests.py usr/lib/python3.14/dist-packages/cctbx_website/command_line/ usr/lib/python3.14/dist-packages/cctbx_website/command_line/__init__.py usr/lib/python3.14/dist-packages/cctbx_website/command_line/comment_to_docstring.py usr/lib/python3.14/dist-packages/cctbx_website/command_line/edit_for_boost.py usr/lib/python3.14/dist-packages/cctbx_website/command_line/edit_html.py usr/lib/python3.14/dist-packages/cctbx_website/command_line/extract_script_from_html_cctbx_doc.py usr/lib/python3.14/dist-packages/cctbx_website/command_line/run_pdoc_cctbx_api.py usr/lib/python3.14/dist-packages/cctbx_website/command_line/tst_comment_to_docstring.py usr/lib/python3.14/dist-packages/cctbx_website/regression/ usr/lib/python3.14/dist-packages/cctbx_website/regression/__init__.py usr/lib/python3.14/dist-packages/cctbx_website/regression/exercise.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_10_doc_programming_tips_1.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_11_script_1.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_12_script_compare_ss.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_13_script_ideal_ss.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_15_doc_models_hierarchy.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_17_script_rfactors.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_18_doc_programming_tips_2.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_19_doc_programming_tips_3.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_1_template.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_2_doc_hlo_intro.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_3_doc_hlo_model_manager.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_4_doc_hlo_data_manager.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_5_doc_hlo_map_manager.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py usr/lib/python3.14/dist-packages/cctbx_website/regression/tst_7_doc_low_flex_advanced.py 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usr/lib/python3.14/dist-packages/dxtbx/model/history.h usr/lib/python3.14/dist-packages/dxtbx/model/kappa_goniometer.h usr/lib/python3.14/dist-packages/dxtbx/model/model_helpers.h usr/lib/python3.14/dist-packages/dxtbx/model/multi_axis_goniometer.h usr/lib/python3.14/dist-packages/dxtbx/model/panel.h usr/lib/python3.14/dist-packages/dxtbx/model/panel_data.h usr/lib/python3.14/dist-packages/dxtbx/model/parallax_correction.h usr/lib/python3.14/dist-packages/dxtbx/model/pixel_to_millimeter.h usr/lib/python3.14/dist-packages/dxtbx/model/profile.py usr/lib/python3.14/dist-packages/dxtbx/model/ray_intersection.h usr/lib/python3.14/dist-packages/dxtbx/model/scan.h usr/lib/python3.14/dist-packages/dxtbx/model/scan.py usr/lib/python3.14/dist-packages/dxtbx/model/scan_helpers.h usr/lib/python3.14/dist-packages/dxtbx/model/scan_helpers.py usr/lib/python3.14/dist-packages/dxtbx/model/spectrum.h usr/lib/python3.14/dist-packages/dxtbx/model/tof_helpers.py usr/lib/python3.14/dist-packages/dxtbx/model/virtual_panel.h usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/ usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/beam.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/crystal.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/detector.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/experiment.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/experiment_list.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/goniometer.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/history.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/kappa_goniometer.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/model_ext.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/multi_axis_goniometer.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/panel.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/parallax_correction.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/pickle_suite.h usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/pixel_to_millimeter.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/scan.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/scan_helpers.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/spectrum.cc usr/lib/python3.14/dist-packages/dxtbx/model/boost_python/to_from_dict.h usr/lib/python3.14/dist-packages/dxtbx/nexus/ usr/lib/python3.14/dist-packages/dxtbx/nexus/__init__.py usr/lib/python3.14/dist-packages/dxtbx/serialize/ usr/lib/python3.14/dist-packages/dxtbx/serialize/__init__.py usr/lib/python3.14/dist-packages/dxtbx/serialize/filename.py usr/lib/python3.14/dist-packages/dxtbx/serialize/imageset.py usr/lib/python3.14/dist-packages/dxtbx/serialize/load.py usr/lib/python3.14/dist-packages/dxtbx/serialize/xds.py usr/lib/python3.14/dist-packages/dxtbx/util/ usr/lib/python3.14/dist-packages/dxtbx/util/__init__.py usr/lib/python3.14/dist-packages/dxtbx/util/dlsnxs2cbf.py usr/lib/python3.14/dist-packages/dxtbx/util/rotate_and_average.py usr/lib/python3.14/dist-packages/fable/ usr/lib/python3.14/dist-packages/fable/__init__.py usr/lib/python3.14/dist-packages/fable/cout.py usr/lib/python3.14/dist-packages/fable/equivalence.py usr/lib/python3.14/dist-packages/fable/intrinsics.py usr/lib/python3.14/dist-packages/fable/read.py usr/lib/python3.14/dist-packages/fable/run_tests.py usr/lib/python3.14/dist-packages/fable/simple_compilation.py usr/lib/python3.14/dist-packages/fable/tokenization.py usr/lib/python3.14/dist-packages/fable/tst_cout.py usr/lib/python3.14/dist-packages/fable/tst_cout_compile.py usr/lib/python3.14/dist-packages/fable/tst_equivalence.py usr/lib/python3.14/dist-packages/fable/tst_ext.py usr/lib/python3.14/dist-packages/fable/tst_read.py usr/lib/python3.14/dist-packages/fable/utils.py usr/lib/python3.14/dist-packages/fable/command_line/ usr/lib/python3.14/dist-packages/fable/command_line/__init__.py usr/lib/python3.14/dist-packages/fable/command_line/cout.py usr/lib/python3.14/dist-packages/fable/command_line/fem_include_search_paths.py usr/lib/python3.14/dist-packages/fable/command_line/insert_write_at_start_of_each_procedure.py usr/lib/python3.14/dist-packages/fable/command_line/read.py usr/lib/python3.14/dist-packages/fable/command_line/show_calls.py usr/lib/python3.14/dist-packages/fable/command_line/split.py usr/lib/python3.14/dist-packages/fast_linalg/ usr/lib/python3.14/dist-packages/fast_linalg/__init__.py usr/lib/python3.14/dist-packages/fftw3tbx/ usr/lib/python3.14/dist-packages/fftw3tbx/__init__.py usr/lib/python3.14/dist-packages/fftw3tbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/fftw3tbx/tst_ext.py usr/lib/python3.14/dist-packages/gltbx/ usr/lib/python3.14/dist-packages/gltbx/__init__.py usr/lib/python3.14/dist-packages/gltbx/extract_opengl_specs.py usr/lib/python3.14/dist-packages/gltbx/fonts.py usr/lib/python3.14/dist-packages/gltbx/generate_defines_bpl.py usr/lib/python3.14/dist-packages/gltbx/generate_fonts_ucs_cpp.py usr/lib/python3.14/dist-packages/gltbx/generate_functions_bpl.py usr/lib/python3.14/dist-packages/gltbx/gl.py usr/lib/python3.14/dist-packages/gltbx/gl_managed.py usr/lib/python3.14/dist-packages/gltbx/glu.py usr/lib/python3.14/dist-packages/gltbx/images.py usr/lib/python3.14/dist-packages/gltbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/gltbx/quadrics.py usr/lib/python3.14/dist-packages/gltbx/run_tests.py usr/lib/python3.14/dist-packages/gltbx/tst.py usr/lib/python3.14/dist-packages/gltbx/tst_ellipsoids.py usr/lib/python3.14/dist-packages/gltbx/tst_fonts.py usr/lib/python3.14/dist-packages/gltbx/tst_viewer_utils.py usr/lib/python3.14/dist-packages/gltbx/util.py usr/lib/python3.14/dist-packages/gltbx/viewer_utils.py usr/lib/python3.14/dist-packages/gltbx/wx_cube.py usr/lib/python3.14/dist-packages/gltbx/wx_ellipsoids_test.py usr/lib/python3.14/dist-packages/gltbx/wx_motion_on_tab.py usr/lib/python3.14/dist-packages/gltbx/wx_scene.py usr/lib/python3.14/dist-packages/gltbx/wx_viewer.py usr/lib/python3.14/dist-packages/gltbx/wx_viewer_example.py usr/lib/python3.14/dist-packages/gltbx/wx_viewer_leapmotion.py usr/lib/python3.14/dist-packages/gltbx/wx_viewers_images.py usr/lib/python3.14/dist-packages/gltbx/command_line/ usr/lib/python3.14/dist-packages/gltbx/command_line/__init__.py usr/lib/python3.14/dist-packages/gltbx/command_line/try_imports.py usr/lib/python3.14/dist-packages/iotbx/ usr/lib/python3.14/dist-packages/iotbx/__init__.py usr/lib/python3.14/dist-packages/iotbx/builders.py usr/lib/python3.14/dist-packages/iotbx/builders_depending_on_smtbx.py usr/lib/python3.14/dist-packages/iotbx/cif_mtz_data_labels.py usr/lib/python3.14/dist-packages/iotbx/cli_parser.py usr/lib/python3.14/dist-packages/iotbx/crystal_symmetry_from_any.py usr/lib/python3.14/dist-packages/iotbx/csv_utils.py usr/lib/python3.14/dist-packages/iotbx/data_plots.py usr/lib/python3.14/dist-packages/iotbx/extract_xtal_data.py usr/lib/python3.14/dist-packages/iotbx/file_reader.py usr/lib/python3.14/dist-packages/iotbx/format.py usr/lib/python3.14/dist-packages/iotbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/iotbx/logfiles.py usr/lib/python3.14/dist-packages/iotbx/map_manager.py usr/lib/python3.14/dist-packages/iotbx/map_model_manager.py usr/lib/python3.14/dist-packages/iotbx/map_tools.py usr/lib/python3.14/dist-packages/iotbx/merging_statistics.py usr/lib/python3.14/dist-packages/iotbx/mtrix_biomt.py usr/lib/python3.14/dist-packages/iotbx/option_parser.py usr/lib/python3.14/dist-packages/iotbx/phases.py usr/lib/python3.14/dist-packages/iotbx/phil.py usr/lib/python3.14/dist-packages/iotbx/poscar.py usr/lib/python3.14/dist-packages/iotbx/pymol.py usr/lib/python3.14/dist-packages/iotbx/ranges.py usr/lib/python3.14/dist-packages/iotbx/reflection_file_converter.py usr/lib/python3.14/dist-packages/iotbx/reflection_file_editor.py usr/lib/python3.14/dist-packages/iotbx/reflection_file_reader.py usr/lib/python3.14/dist-packages/iotbx/reflection_file_utils.py usr/lib/python3.14/dist-packages/iotbx/run_tests.py usr/lib/python3.14/dist-packages/iotbx/simple_parser.py usr/lib/python3.14/dist-packages/iotbx/symmetry.py usr/lib/python3.14/dist-packages/iotbx/table_one.py usr/lib/python3.14/dist-packages/iotbx/wildcard.py usr/lib/python3.14/dist-packages/iotbx/PrettyPrint/ usr/lib/python3.14/dist-packages/iotbx/PrettyPrint/__init__.py usr/lib/python3.14/dist-packages/iotbx/PrettyPrint/tables.py usr/lib/python3.14/dist-packages/iotbx/bioinformatics/ usr/lib/python3.14/dist-packages/iotbx/bioinformatics/__init__.py usr/lib/python3.14/dist-packages/iotbx/bioinformatics/alignment_as_hsearch.py usr/lib/python3.14/dist-packages/iotbx/bioinformatics/ebi_wu_blast_xml.py usr/lib/python3.14/dist-packages/iotbx/bioinformatics/homologues.py usr/lib/python3.14/dist-packages/iotbx/bioinformatics/local_blast.py usr/lib/python3.14/dist-packages/iotbx/bioinformatics/ncbi_blast_xml.py usr/lib/python3.14/dist-packages/iotbx/bioinformatics/pdb_info.py usr/lib/python3.14/dist-packages/iotbx/bioinformatics/pubmed.py usr/lib/python3.14/dist-packages/iotbx/bioinformatics/structure.py usr/lib/python3.14/dist-packages/iotbx/bioinformatics/xmlbuild.py usr/lib/python3.14/dist-packages/iotbx/ccp4_map/ usr/lib/python3.14/dist-packages/iotbx/ccp4_map/__init__.py usr/lib/python3.14/dist-packages/iotbx/ccp4_map/crystal_symmetry_from_ccp4_map.py usr/lib/python3.14/dist-packages/iotbx/ccp4_map/tst.py usr/lib/python3.14/dist-packages/iotbx/cif/ usr/lib/python3.14/dist-packages/iotbx/cif/__init__.py usr/lib/python3.14/dist-packages/iotbx/cif/builders.py usr/lib/python3.14/dist-packages/iotbx/cif/citations.py usr/lib/python3.14/dist-packages/iotbx/cif/cod_tools.py usr/lib/python3.14/dist-packages/iotbx/cif/crystal_symmetry_from_cif.py usr/lib/python3.14/dist-packages/iotbx/cif/errors.py usr/lib/python3.14/dist-packages/iotbx/cif/geometry.py usr/lib/python3.14/dist-packages/iotbx/cif/model.py usr/lib/python3.14/dist-packages/iotbx/cif/restraint_file_merge.py usr/lib/python3.14/dist-packages/iotbx/cif/restraints.py usr/lib/python3.14/dist-packages/iotbx/cif/validation.py usr/lib/python3.14/dist-packages/iotbx/cns/ usr/lib/python3.14/dist-packages/iotbx/cns/__init__.py usr/lib/python3.14/dist-packages/iotbx/cns/crystal_symmetry_from_inp.py usr/lib/python3.14/dist-packages/iotbx/cns/crystal_symmetry_from_sdb.py usr/lib/python3.14/dist-packages/iotbx/cns/crystal_symmetry_utils.py usr/lib/python3.14/dist-packages/iotbx/cns/index_fobs_sigma_reader.py usr/lib/python3.14/dist-packages/iotbx/cns/miller_array.py usr/lib/python3.14/dist-packages/iotbx/cns/pdb_remarks.py usr/lib/python3.14/dist-packages/iotbx/cns/reflection_reader.py usr/lib/python3.14/dist-packages/iotbx/cns/sdb_reader.py usr/lib/python3.14/dist-packages/iotbx/cns/sdb_writer.py usr/lib/python3.14/dist-packages/iotbx/cns/space_group_symbols.py usr/lib/python3.14/dist-packages/iotbx/cns/tst_cns.py usr/lib/python3.14/dist-packages/iotbx/cns/xray_structure.py usr/lib/python3.14/dist-packages/iotbx/command_line/ usr/lib/python3.14/dist-packages/iotbx/command_line/__init__.py usr/lib/python3.14/dist-packages/iotbx/command_line/biomt_reconstruction.py usr/lib/python3.14/dist-packages/iotbx/command_line/blast_pdb.py usr/lib/python3.14/dist-packages/iotbx/command_line/build_phil_cache.py usr/lib/python3.14/dist-packages/iotbx/command_line/cbf_read.py usr/lib/python3.14/dist-packages/iotbx/command_line/cif.as_miller_arrays.py usr/lib/python3.14/dist-packages/iotbx/command_line/cif.as_xray_structure.py usr/lib/python3.14/dist-packages/iotbx/command_line/cif.validate.py usr/lib/python3.14/dist-packages/iotbx/command_line/cif_as_pdb.py usr/lib/python3.14/dist-packages/iotbx/command_line/cns.reflection_reader.py usr/lib/python3.14/dist-packages/iotbx/command_line/cns.sdb_reader.py usr/lib/python3.14/dist-packages/iotbx/command_line/cns.transfer_crystal_symmetry.py usr/lib/python3.14/dist-packages/iotbx/command_line/cns_as_mtz.py usr/lib/python3.14/dist-packages/iotbx/command_line/crystal_symmetry_from_any.py usr/lib/python3.14/dist-packages/iotbx/command_line/csv_as_mtz.py usr/lib/python3.14/dist-packages/iotbx/command_line/dano_as_amplitudes.py usr/lib/python3.14/dist-packages/iotbx/command_line/detector_image_as_png.py usr/lib/python3.14/dist-packages/iotbx/command_line/distance_least_squares.py usr/lib/python3.14/dist-packages/iotbx/command_line/dtrek.to_cns.py usr/lib/python3.14/dist-packages/iotbx/command_line/effective_resolution.py usr/lib/python3.14/dist-packages/iotbx/command_line/emma.py usr/lib/python3.14/dist-packages/iotbx/command_line/explore_metric_symmetry.py usr/lib/python3.14/dist-packages/iotbx/command_line/export_scalepack_unmerged.py usr/lib/python3.14/dist-packages/iotbx/command_line/file_reader.py usr/lib/python3.14/dist-packages/iotbx/command_line/flip_symmetric_amino_acids.py usr/lib/python3.14/dist-packages/iotbx/command_line/french_wilson.py usr/lib/python3.14/dist-packages/iotbx/command_line/get_pubmed_citation.py usr/lib/python3.14/dist-packages/iotbx/command_line/lattice_symmetry.py usr/lib/python3.14/dist-packages/iotbx/command_line/merging_statistics.py usr/lib/python3.14/dist-packages/iotbx/command_line/mtrix_reconstruction.py usr/lib/python3.14/dist-packages/iotbx/command_line/mtz.dump.py usr/lib/python3.14/dist-packages/iotbx/command_line/mtz_as_cif.py usr/lib/python3.14/dist-packages/iotbx/command_line/patterson_map.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.as_xray_structure.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.b_factor_stats.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.box_around_molecule.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.hierarchy.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.insert_scale_records.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.join_fragment_files.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.link_as_geometry_restraints_edits.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.print_sequence.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.superpose_atoms_by_name.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb.superpose_centers_of_mass.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_add_conformations.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_as_cif.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_as_fasta.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_cif_conversion.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_get_citation.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_labels_comparison.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_labels_diff.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_remediator.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_show_connectivity.py usr/lib/python3.14/dist-packages/iotbx/command_line/pdb_split_models.py usr/lib/python3.14/dist-packages/iotbx/command_line/phil.py usr/lib/python3.14/dist-packages/iotbx/command_line/poscar_as_xray_structure.py usr/lib/python3.14/dist-packages/iotbx/command_line/r_free_flags_accumulation.py usr/lib/python3.14/dist-packages/iotbx/command_line/r_free_flags_as_cns.py usr/lib/python3.14/dist-packages/iotbx/command_line/r_free_flags_completion_simple.py usr/lib/python3.14/dist-packages/iotbx/command_line/reflection_file_converter.py usr/lib/python3.14/dist-packages/iotbx/command_line/reflection_file_editor.py usr/lib/python3.14/dist-packages/iotbx/command_line/reflection_file_reader.py usr/lib/python3.14/dist-packages/iotbx/command_line/reflection_statistics.py usr/lib/python3.14/dist-packages/iotbx/command_line/reindex.py usr/lib/python3.14/dist-packages/iotbx/command_line/shelx.as_cif.py usr/lib/python3.14/dist-packages/iotbx/command_line/shelx.as_xray_structure.py usr/lib/python3.14/dist-packages/iotbx/command_line/shelx.dump_as_python.py usr/lib/python3.14/dist-packages/iotbx/command_line/show_distances.py usr/lib/python3.14/dist-packages/iotbx/command_line/show_systematic_absences.py usr/lib/python3.14/dist-packages/iotbx/command_line/simple_map_coefficients.py usr/lib/python3.14/dist-packages/iotbx/command_line/sort_atoms.py usr/lib/python3.14/dist-packages/iotbx/command_line/split_data_cif.py usr/lib/python3.14/dist-packages/iotbx/command_line/symmetry_search.py usr/lib/python3.14/dist-packages/iotbx/command_line/unique_with_biomt.py usr/lib/python3.14/dist-packages/iotbx/command_line/xplor.map.show_summary.py usr/lib/python3.14/dist-packages/iotbx/data_manager/ usr/lib/python3.14/dist-packages/iotbx/data_manager/__init__.py usr/lib/python3.14/dist-packages/iotbx/data_manager/common.py usr/lib/python3.14/dist-packages/iotbx/data_manager/json.py usr/lib/python3.14/dist-packages/iotbx/data_manager/map_coefficients.py usr/lib/python3.14/dist-packages/iotbx/data_manager/miller_array.py usr/lib/python3.14/dist-packages/iotbx/data_manager/model.py usr/lib/python3.14/dist-packages/iotbx/data_manager/ncs_spec.py usr/lib/python3.14/dist-packages/iotbx/data_manager/phil.py usr/lib/python3.14/dist-packages/iotbx/data_manager/real_map.py usr/lib/python3.14/dist-packages/iotbx/data_manager/restraint.py usr/lib/python3.14/dist-packages/iotbx/data_manager/sequence.py usr/lib/python3.14/dist-packages/iotbx/data_manager/yaml.py usr/lib/python3.14/dist-packages/iotbx/detectors/ usr/lib/python3.14/dist-packages/iotbx/detectors/__init__.py usr/lib/python3.14/dist-packages/iotbx/detectors/active_area_filter.py usr/lib/python3.14/dist-packages/iotbx/detectors/adsc.py usr/lib/python3.14/dist-packages/iotbx/detectors/adsc_minicbf.py usr/lib/python3.14/dist-packages/iotbx/detectors/adsc_module.py usr/lib/python3.14/dist-packages/iotbx/detectors/beam_center_convention.py usr/lib/python3.14/dist-packages/iotbx/detectors/bruker.py usr/lib/python3.14/dist-packages/iotbx/detectors/cbf.py usr/lib/python3.14/dist-packages/iotbx/detectors/cspad_detector_formats.py usr/lib/python3.14/dist-packages/iotbx/detectors/detectorbase.py usr/lib/python3.14/dist-packages/iotbx/detectors/dtrek.py usr/lib/python3.14/dist-packages/iotbx/detectors/edf.py usr/lib/python3.14/dist-packages/iotbx/detectors/eiger.py usr/lib/python3.14/dist-packages/iotbx/detectors/eiger_minicbf.py usr/lib/python3.14/dist-packages/iotbx/detectors/generic_detector.py usr/lib/python3.14/dist-packages/iotbx/detectors/hamamatsu.py usr/lib/python3.14/dist-packages/iotbx/detectors/image_from_http_request.py usr/lib/python3.14/dist-packages/iotbx/detectors/macscience.py usr/lib/python3.14/dist-packages/iotbx/detectors/mar.py usr/lib/python3.14/dist-packages/iotbx/detectors/marIP.py usr/lib/python3.14/dist-packages/iotbx/detectors/noir.py usr/lib/python3.14/dist-packages/iotbx/detectors/npy.py usr/lib/python3.14/dist-packages/iotbx/detectors/pilatus_minicbf.py usr/lib/python3.14/dist-packages/iotbx/detectors/pilatus_slice.py usr/lib/python3.14/dist-packages/iotbx/detectors/raxis.py usr/lib/python3.14/dist-packages/iotbx/detectors/raxis_nonsquare.py usr/lib/python3.14/dist-packages/iotbx/detectors/raxisbase.py usr/lib/python3.14/dist-packages/iotbx/detectors/saturn.py usr/lib/python3.14/dist-packages/iotbx/detectors/test_mar.py usr/lib/python3.14/dist-packages/iotbx/detectors/test_raxis2.py usr/lib/python3.14/dist-packages/iotbx/detectors/tst_adsc.py usr/lib/python3.14/dist-packages/iotbx/detectors/tst_cbf_comp_read_meth.py usr/lib/python3.14/dist-packages/iotbx/detectors/tst_debug_write.py usr/lib/python3.14/dist-packages/iotbx/detectors/tst_detectors.py usr/lib/python3.14/dist-packages/iotbx/detectors/tst_py_cbf.py usr/lib/python3.14/dist-packages/iotbx/detectors/url_support.py usr/lib/python3.14/dist-packages/iotbx/detectors/context/ usr/lib/python3.14/dist-packages/iotbx/detectors/context/__init__.py usr/lib/python3.14/dist-packages/iotbx/detectors/context/camera_convention.py usr/lib/python3.14/dist-packages/iotbx/detectors/context/config_detector.py usr/lib/python3.14/dist-packages/iotbx/detectors/context/endstation.py usr/lib/python3.14/dist-packages/iotbx/detectors/context/endstation_max_iv_trial.py usr/lib/python3.14/dist-packages/iotbx/detectors/context/spot_xy_convention.py usr/lib/python3.14/dist-packages/iotbx/detectors/util/ usr/lib/python3.14/dist-packages/iotbx/detectors/util/__init__.py usr/lib/python3.14/dist-packages/iotbx/detectors/util/filters.py usr/lib/python3.14/dist-packages/iotbx/dsn6/ usr/lib/python3.14/dist-packages/iotbx/dsn6/__init__.py usr/lib/python3.14/dist-packages/iotbx/dsn6/tst.py usr/lib/python3.14/dist-packages/iotbx/dtrek/ usr/lib/python3.14/dist-packages/iotbx/dtrek/__init__.py usr/lib/python3.14/dist-packages/iotbx/dtrek/crystal_symmetry_from_ref.py usr/lib/python3.14/dist-packages/iotbx/dtrek/dtrek_symmetry_dict.py usr/lib/python3.14/dist-packages/iotbx/dtrek/reflnlist_reader.py usr/lib/python3.14/dist-packages/iotbx/examples/ usr/lib/python3.14/dist-packages/iotbx/examples/__init__.py usr/lib/python3.14/dist-packages/iotbx/examples/direct_methods_light.py usr/lib/python3.14/dist-packages/iotbx/examples/libtbx_phil_examples.py usr/lib/python3.14/dist-packages/iotbx/examples/mtz_convert_free_to_work.py usr/lib/python3.14/dist-packages/iotbx/examples/mtz_free_flipper.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_hierarchy.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_shake.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_split_chains.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_symmetry_copies.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_tardy_conf_sampling_simple.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_to_map_simple.py usr/lib/python3.14/dist-packages/iotbx/examples/pdbx_mmcif_tutorial.py usr/lib/python3.14/dist-packages/iotbx/examples/prepare_model_for_rsr.py usr/lib/python3.14/dist-packages/iotbx/examples/recalculate_phenix_refine_r_factors.py usr/lib/python3.14/dist-packages/iotbx/examples/shelx_latt_sym_to_space_group_symbol.py usr/lib/python3.14/dist-packages/iotbx/examples/tst_mtz_free_flipper.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/ usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/__init__.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/tst.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/v2_simple.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/v3_better.py usr/lib/python3.14/dist-packages/iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py usr/lib/python3.14/dist-packages/iotbx/file_io/ usr/lib/python3.14/dist-packages/iotbx/file_io/__init__.py usr/lib/python3.14/dist-packages/iotbx/file_io/_maps.py usr/lib/python3.14/dist-packages/iotbx/file_io/detection.py usr/lib/python3.14/dist-packages/iotbx/file_io/reader.py usr/lib/python3.14/dist-packages/iotbx/file_io/text_detection.py usr/lib/python3.14/dist-packages/iotbx/fullprof/ usr/lib/python3.14/dist-packages/iotbx/fullprof/__init__.py usr/lib/python3.14/dist-packages/iotbx/fullprof/read_pcr.py usr/lib/python3.14/dist-packages/iotbx/fullprof/write_pcr.py usr/lib/python3.14/dist-packages/iotbx/gui_tools/ usr/lib/python3.14/dist-packages/iotbx/gui_tools/__init__.py usr/lib/python3.14/dist-packages/iotbx/gui_tools/cif_conversions.py usr/lib/python3.14/dist-packages/iotbx/gui_tools/import_data_and_flags.py usr/lib/python3.14/dist-packages/iotbx/gui_tools/models.py usr/lib/python3.14/dist-packages/iotbx/gui_tools/reflections.py usr/lib/python3.14/dist-packages/iotbx/gui_tools/tst.py usr/lib/python3.14/dist-packages/iotbx/kriber/ usr/lib/python3.14/dist-packages/iotbx/kriber/__init__.py usr/lib/python3.14/dist-packages/iotbx/kriber/strudat.py usr/lib/python3.14/dist-packages/iotbx/kriber/tst_strudat.py usr/lib/python3.14/dist-packages/iotbx/mrcfile/ usr/lib/python3.14/dist-packages/iotbx/mrcfile/__init__.py usr/lib/python3.14/dist-packages/iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py usr/lib/python3.14/dist-packages/iotbx/mtz/ usr/lib/python3.14/dist-packages/iotbx/mtz/__init__.py usr/lib/python3.14/dist-packages/iotbx/mtz/crystal_symmetry_from_mtz.py usr/lib/python3.14/dist-packages/iotbx/mtz/extract_from_symmetry_lib.py usr/lib/python3.14/dist-packages/iotbx/mtz/tst.py usr/lib/python3.14/dist-packages/iotbx/mtz/tst_dano.py usr/lib/python3.14/dist-packages/iotbx/mtz/tst_ext.py usr/lib/python3.14/dist-packages/iotbx/mtz/tst_extract_from_symmetry_lib.py usr/lib/python3.14/dist-packages/iotbx/mtz/tst_miller_dict.py usr/lib/python3.14/dist-packages/iotbx/mtz/tst_unmerged.py usr/lib/python3.14/dist-packages/iotbx/ncs/ usr/lib/python3.14/dist-packages/iotbx/ncs/__init__.py usr/lib/python3.14/dist-packages/iotbx/pdb/ usr/lib/python3.14/dist-packages/iotbx/pdb/__init__.py usr/lib/python3.14/dist-packages/iotbx/pdb/aa_utils.py usr/lib/python3.14/dist-packages/iotbx/pdb/amino_acid_codes.py usr/lib/python3.14/dist-packages/iotbx/pdb/atom_name_interpretation.py usr/lib/python3.14/dist-packages/iotbx/pdb/atom_selection.py usr/lib/python3.14/dist-packages/iotbx/pdb/cryst1_interpretation.py usr/lib/python3.14/dist-packages/iotbx/pdb/crystal_symmetry_from_pdb.py usr/lib/python3.14/dist-packages/iotbx/pdb/download.py usr/lib/python3.14/dist-packages/iotbx/pdb/experiment_type.py usr/lib/python3.14/dist-packages/iotbx/pdb/extract_rfactors_resolutions_sigma.py usr/lib/python3.14/dist-packages/iotbx/pdb/fetch.py usr/lib/python3.14/dist-packages/iotbx/pdb/forward_compatible_pdb_cif_conversion.py usr/lib/python3.14/dist-packages/iotbx/pdb/hierarchy.py usr/lib/python3.14/dist-packages/iotbx/pdb/hybrid_36.py usr/lib/python3.14/dist-packages/iotbx/pdb/misc_records_output.py usr/lib/python3.14/dist-packages/iotbx/pdb/mmcif.py usr/lib/python3.14/dist-packages/iotbx/pdb/modified_aa_names.py usr/lib/python3.14/dist-packages/iotbx/pdb/modified_rna_dna_names.py usr/lib/python3.14/dist-packages/iotbx/pdb/nucleic_acid_codes.py usr/lib/python3.14/dist-packages/iotbx/pdb/pdb_v3_cif_conversion.py usr/lib/python3.14/dist-packages/iotbx/pdb/pdbe.py usr/lib/python3.14/dist-packages/iotbx/pdb/rcsb.py usr/lib/python3.14/dist-packages/iotbx/pdb/records.py usr/lib/python3.14/dist-packages/iotbx/pdb/remark_290_interpretation.py usr/lib/python3.14/dist-packages/iotbx/pdb/remark_2_interpretation.py usr/lib/python3.14/dist-packages/iotbx/pdb/remark_3_interpretation.py usr/lib/python3.14/dist-packages/iotbx/pdb/rna_dna_detection.py usr/lib/python3.14/dist-packages/iotbx/pdb/secondary_structure.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_atom_name_interpretation.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_atom_selection.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_atom_selection_string.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_ext.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_hierarchy.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_hierarchy_atom_sort.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_hierarchy_flip_symmetric.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_hierarchy_flip_symmetric_2.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_input_pickling.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_mmcif.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_mmcif_hierarchy.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_mmcif_hierarchy_2.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_pdb.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_read_mtrix_records_from_cif.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_rna_dna_atom_names.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_secondary_structure.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_secondary_structure_2.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_tls.py usr/lib/python3.14/dist-packages/iotbx/pdb/tst_utils.py usr/lib/python3.14/dist-packages/iotbx/pdb/utils.py usr/lib/python3.14/dist-packages/iotbx/pdb/web_service_api.py usr/lib/python3.14/dist-packages/iotbx/pdb/xray_structure.py usr/lib/python3.14/dist-packages/iotbx/pdb/remediation/ usr/lib/python3.14/dist-packages/iotbx/pdb/remediation/__init__.py usr/lib/python3.14/dist-packages/iotbx/pdb/remediation/remediator.py usr/lib/python3.14/dist-packages/iotbx/pdb/remediation/tst_remediator.py usr/lib/python3.14/dist-packages/iotbx/programs/ usr/lib/python3.14/dist-packages/iotbx/programs/__init__.py usr/lib/python3.14/dist-packages/iotbx/programs/box_around_molecule.py usr/lib/python3.14/dist-packages/iotbx/programs/split_data_cif.py usr/lib/python3.14/dist-packages/iotbx/programs/unique_with_biomt.py usr/lib/python3.14/dist-packages/iotbx/regression/ usr/lib/python3.14/dist-packages/iotbx/regression/__init__.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_add_conformations.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_all_chain_ids.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_atom_selections_10k.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_bioinformatics.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_box_around_molecule.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_cif_1.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_cif_as_pdb_1atom.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_cli_parser.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_crystal_symmetry_from_any.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_csv_utils.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_data_manager.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_data_plots.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_examples.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_export_scalepack_unmerged.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_extract_xtal_data.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_fetch.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_file_io.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_file_reader.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_generate_n_char_string.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_group_rounding.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_altlocs.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_copy_select.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_id_str.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_long_chain_ids_1.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_long_resname_1.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_long_resname_2.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_long_resname_3.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_long_resname_4.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_occupancies_rounding.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_hierarchy_pdb_v3.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_lattice_symmetry.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_manager.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_manager_2.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_manager_wrapping.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_2.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_3.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_4.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_call_consistency.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_cif.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_external_sharpening_7.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_local_resolution_10.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_model_manager_tls_from_map_8.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_map_tools.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_merging_statistics.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_miller_sort_asu.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_mmcif_input.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_mmcif_multimodel.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_mmcif_segids.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_mmcif_to_from_hierarchy.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_mrc_io.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_mtz_as_cif.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_patterson.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_pdb_as_cif.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_pdb_as_fasta.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_pdb_cif_cells.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_pdb_cif_inputs.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_pdb_link_records.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_pdbx_mmcif_tutorial.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_phases.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_phil.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_poscar.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_reflection_file_editor.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_reflection_file_reader.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_reflection_file_utils.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_reflection_statistics.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_reindex.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_restraints_merge.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_selected_hierarchy_flip.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_show_systematic_absences.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_simple_map_coefficients.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_simple_parser.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_sort_atoms.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_split_data_cif.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_split_models.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_symmetry.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_text_detection.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_wildcard.py usr/lib/python3.14/dist-packages/iotbx/regression/tst_xray_scale.py usr/lib/python3.14/dist-packages/iotbx/regression/utils.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/ usr/lib/python3.14/dist-packages/iotbx/regression/ncs/__init__.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_input.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_input_preserves_iseqs.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_reordered_chains.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_search_broken_chain.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_search_ligs.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_search_shortcut_1.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_user_selections.py usr/lib/python3.14/dist-packages/iotbx/regression/ncs/tst_ncs_without_validation.py usr/lib/python3.14/dist-packages/iotbx/scalepack/ usr/lib/python3.14/dist-packages/iotbx/scalepack/__init__.py usr/lib/python3.14/dist-packages/iotbx/scalepack/crystal_symmetry_from_hkl.py usr/lib/python3.14/dist-packages/iotbx/scalepack/merge.py usr/lib/python3.14/dist-packages/iotbx/scalepack/no_merge_original_index.py usr/lib/python3.14/dist-packages/iotbx/scalepack/space_group_dictionary.py usr/lib/python3.14/dist-packages/iotbx/scalepack/tst_merge.py usr/lib/python3.14/dist-packages/iotbx/scalepack/tst_no_merge_original_index.py usr/lib/python3.14/dist-packages/iotbx/shelx/ usr/lib/python3.14/dist-packages/iotbx/shelx/__init__.py usr/lib/python3.14/dist-packages/iotbx/shelx/crystal_symmetry_from_ins.py usr/lib/python3.14/dist-packages/iotbx/shelx/errors.py usr/lib/python3.14/dist-packages/iotbx/shelx/fcf.py usr/lib/python3.14/dist-packages/iotbx/shelx/fvar_encoding.py usr/lib/python3.14/dist-packages/iotbx/shelx/hklf.py usr/lib/python3.14/dist-packages/iotbx/shelx/lexer.py usr/lib/python3.14/dist-packages/iotbx/shelx/parsers.py usr/lib/python3.14/dist-packages/iotbx/shelx/tokens.py usr/lib/python3.14/dist-packages/iotbx/shelx/tst_fvar_encoding.py usr/lib/python3.14/dist-packages/iotbx/shelx/tst_hklf.py usr/lib/python3.14/dist-packages/iotbx/shelx/tst_lex_parse_build.py usr/lib/python3.14/dist-packages/iotbx/shelx/tst_writer.py usr/lib/python3.14/dist-packages/iotbx/shelx/write_ins.py usr/lib/python3.14/dist-packages/iotbx/shelx/writer.py usr/lib/python3.14/dist-packages/iotbx/solve/ usr/lib/python3.14/dist-packages/iotbx/solve/__init__.py usr/lib/python3.14/dist-packages/iotbx/solve/crystal_symmetry_from_inp.py usr/lib/python3.14/dist-packages/iotbx/solve/fpfm_reader.py usr/lib/python3.14/dist-packages/iotbx/xds/ usr/lib/python3.14/dist-packages/iotbx/xds/__init__.py usr/lib/python3.14/dist-packages/iotbx/xds/blank_cbf.py usr/lib/python3.14/dist-packages/iotbx/xds/correction.py usr/lib/python3.14/dist-packages/iotbx/xds/crystal_symmetry_from_hkl.py usr/lib/python3.14/dist-packages/iotbx/xds/gain_cbf.py usr/lib/python3.14/dist-packages/iotbx/xds/geometry.py usr/lib/python3.14/dist-packages/iotbx/xds/integrate_hkl.py usr/lib/python3.14/dist-packages/iotbx/xds/read_ascii.py usr/lib/python3.14/dist-packages/iotbx/xds/spot_xds.py usr/lib/python3.14/dist-packages/iotbx/xds/xds_cbf.py usr/lib/python3.14/dist-packages/iotbx/xds/xds_inp.py usr/lib/python3.14/dist-packages/iotbx/xds/xparm.py usr/lib/python3.14/dist-packages/iotbx/xplor/ usr/lib/python3.14/dist-packages/iotbx/xplor/__init__.py usr/lib/python3.14/dist-packages/iotbx/xplor/crystal_symmetry_from_map.py usr/lib/python3.14/dist-packages/iotbx/xplor/ext.py usr/lib/python3.14/dist-packages/iotbx/xplor/map.py usr/lib/python3.14/dist-packages/iotbx/xplor/tst_xplormap.py usr/lib/python3.14/dist-packages/libtbx/ usr/lib/python3.14/dist-packages/libtbx/__init__.py usr/lib/python3.14/dist-packages/libtbx/assert_utils.py usr/lib/python3.14/dist-packages/libtbx/binary_search.py usr/lib/python3.14/dist-packages/libtbx/callbacks.py usr/lib/python3.14/dist-packages/libtbx/citations.py usr/lib/python3.14/dist-packages/libtbx/clear_paths.py usr/lib/python3.14/dist-packages/libtbx/cli.py usr/lib/python3.14/dist-packages/libtbx/cluster.py usr/lib/python3.14/dist-packages/libtbx/clusterTests.py usr/lib/python3.14/dist-packages/libtbx/code_analysis.py usr/lib/python3.14/dist-packages/libtbx/complex_math.py usr/lib/python3.14/dist-packages/libtbx/configure.py usr/lib/python3.14/dist-packages/libtbx/console_utils.py usr/lib/python3.14/dist-packages/libtbx/containers.py usr/lib/python3.14/dist-packages/libtbx/cpp_function_name.py usr/lib/python3.14/dist-packages/libtbx/crossmingw.py usr/lib/python3.14/dist-packages/libtbx/dlite.py usr/lib/python3.14/dist-packages/libtbx/easy_mp.py usr/lib/python3.14/dist-packages/libtbx/easy_pickle.py usr/lib/python3.14/dist-packages/libtbx/easy_profile.py usr/lib/python3.14/dist-packages/libtbx/easy_run.py usr/lib/python3.14/dist-packages/libtbx/env_config.py usr/lib/python3.14/dist-packages/libtbx/file_clutter.py usr/lib/python3.14/dist-packages/libtbx/find_reference_cycles.py usr/lib/python3.14/dist-packages/libtbx/forward_compatibility.py usr/lib/python3.14/dist-packages/libtbx/introspection.py usr/lib/python3.14/dist-packages/libtbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/libtbx/load_env.py usr/lib/python3.14/dist-packages/libtbx/log.py usr/lib/python3.14/dist-packages/libtbx/math_utils.py usr/lib/python3.14/dist-packages/libtbx/metric_prefixes.py usr/lib/python3.14/dist-packages/libtbx/mpi4py.py usr/lib/python3.14/dist-packages/libtbx/object_oriented_patterns.py usr/lib/python3.14/dist-packages/libtbx/objgraph.py usr/lib/python3.14/dist-packages/libtbx/option_parser.py usr/lib/python3.14/dist-packages/libtbx/path.py usr/lib/python3.14/dist-packages/libtbx/pkg_utils.py usr/lib/python3.14/dist-packages/libtbx/program_template.py usr/lib/python3.14/dist-packages/libtbx/progress.py usr/lib/python3.14/dist-packages/libtbx/pyframe.py usr/lib/python3.14/dist-packages/libtbx/pyplot.py usr/lib/python3.14/dist-packages/libtbx/python_code_parsing.py usr/lib/python3.14/dist-packages/libtbx/resource_monitor.py usr/lib/python3.14/dist-packages/libtbx/run_tests.py usr/lib/python3.14/dist-packages/libtbx/runtime_utils.py usr/lib/python3.14/dist-packages/libtbx/simplexml.py usr/lib/python3.14/dist-packages/libtbx/smart_open.py usr/lib/python3.14/dist-packages/libtbx/start_print_trace.py usr/lib/python3.14/dist-packages/libtbx/str_utils.py usr/lib/python3.14/dist-packages/libtbx/subprocess_with_fixes.py usr/lib/python3.14/dist-packages/libtbx/table_utils.py usr/lib/python3.14/dist-packages/libtbx/thread_utils.py usr/lib/python3.14/dist-packages/libtbx/topological_sort.py usr/lib/python3.14/dist-packages/libtbx/try_hello_world_c.py usr/lib/python3.14/dist-packages/libtbx/tst_add_docstrings_with_ai.py usr/lib/python3.14/dist-packages/libtbx/tst_binary_search.py usr/lib/python3.14/dist-packages/libtbx/tst_citation_encoding.py usr/lib/python3.14/dist-packages/libtbx/tst_citations.py usr/lib/python3.14/dist-packages/libtbx/tst_conda_dispatcher.py usr/lib/python3.14/dist-packages/libtbx/tst_containers.py usr/lib/python3.14/dist-packages/libtbx/tst_dlite.py usr/lib/python3.14/dist-packages/libtbx/tst_easy_mp.py usr/lib/python3.14/dist-packages/libtbx/tst_easy_mp_multicore.py usr/lib/python3.14/dist-packages/libtbx/tst_easy_mp_state.py usr/lib/python3.14/dist-packages/libtbx/tst_easy_pickle.py usr/lib/python3.14/dist-packages/libtbx/tst_find_unused_imports.py usr/lib/python3.14/dist-packages/libtbx/tst_fully_buffered_timeout.py usr/lib/python3.14/dist-packages/libtbx/tst_guided_coding.py usr/lib/python3.14/dist-packages/libtbx/tst_mahalanobis.py usr/lib/python3.14/dist-packages/libtbx/tst_math_utils.py usr/lib/python3.14/dist-packages/libtbx/tst_object_oriented_patterns.py usr/lib/python3.14/dist-packages/libtbx/tst_path.py usr/lib/python3.14/dist-packages/libtbx/tst_program_template.py usr/lib/python3.14/dist-packages/libtbx/tst_python_code_parsing.py usr/lib/python3.14/dist-packages/libtbx/tst_representation.py usr/lib/python3.14/dist-packages/libtbx/tst_run_tests_parallel_retry.py usr/lib/python3.14/dist-packages/libtbx/tst_run_tests_parallel_unique_dirs.py usr/lib/python3.14/dist-packages/libtbx/tst_runtime_utils.py usr/lib/python3.14/dist-packages/libtbx/tst_scheduling.py usr/lib/python3.14/dist-packages/libtbx/tst_str_utils.py usr/lib/python3.14/dist-packages/libtbx/tst_t96_roster.py usr/lib/python3.14/dist-packages/libtbx/tst_thread_utils.py usr/lib/python3.14/dist-packages/libtbx/tst_topological_sort.py usr/lib/python3.14/dist-packages/libtbx/tst_utils.py usr/lib/python3.14/dist-packages/libtbx/tst_version.py usr/lib/python3.14/dist-packages/libtbx/tst_word_index_generator.py usr/lib/python3.14/dist-packages/libtbx/tst_xmlrpc_utils.py usr/lib/python3.14/dist-packages/libtbx/utils.py usr/lib/python3.14/dist-packages/libtbx/version.py usr/lib/python3.14/dist-packages/libtbx/wingide.py usr/lib/python3.14/dist-packages/libtbx/word_index_generator.py usr/lib/python3.14/dist-packages/libtbx/xmlrpc_server_example.py usr/lib/python3.14/dist-packages/libtbx/xmlrpc_utils.py usr/lib/python3.14/dist-packages/libtbx/auto_build/ usr/lib/python3.14/dist-packages/libtbx/auto_build/__init__.py usr/lib/python3.14/dist-packages/libtbx/auto_build/bootstrap.py usr/lib/python3.14/dist-packages/libtbx/auto_build/create_cctbx_bundle_for_installer.py usr/lib/python3.14/dist-packages/libtbx/auto_build/create_installer.py usr/lib/python3.14/dist-packages/libtbx/auto_build/create_mac_app.py usr/lib/python3.14/dist-packages/libtbx/auto_build/create_mac_pkg.py usr/lib/python3.14/dist-packages/libtbx/auto_build/create_windows_exe.py usr/lib/python3.14/dist-packages/libtbx/auto_build/create_windows_installer.py usr/lib/python3.14/dist-packages/libtbx/auto_build/install_base_packages.py usr/lib/python3.14/dist-packages/libtbx/auto_build/install_conda.py usr/lib/python3.14/dist-packages/libtbx/auto_build/install_distribution.py usr/lib/python3.14/dist-packages/libtbx/auto_build/installer_utils.py usr/lib/python3.14/dist-packages/libtbx/auto_build/make_bundle.py usr/lib/python3.14/dist-packages/libtbx/auto_build/package_defs.py usr/lib/python3.14/dist-packages/libtbx/auto_build/plus_installer.py usr/lib/python3.14/dist-packages/libtbx/auto_build/regenerate_module_files.py usr/lib/python3.14/dist-packages/libtbx/auto_build/rpath.py usr/lib/python3.14/dist-packages/libtbx/auto_build/setup_installer.py usr/lib/python3.14/dist-packages/libtbx/auto_build/write_gui_dispatcher_include.py usr/lib/python3.14/dist-packages/libtbx/bundle/ usr/lib/python3.14/dist-packages/libtbx/bundle/__init__.py usr/lib/python3.14/dist-packages/libtbx/bundle/copy_all.py usr/lib/python3.14/dist-packages/libtbx/bundle/copy_build_libtbx.py usr/lib/python3.14/dist-packages/libtbx/bundle/copy_runtime_sources.py usr/lib/python3.14/dist-packages/libtbx/bundle/install_bat.py usr/lib/python3.14/dist-packages/libtbx/bundle/install_csh.py usr/lib/python3.14/dist-packages/libtbx/bundle/utils.py usr/lib/python3.14/dist-packages/libtbx/command_line/ usr/lib/python3.14/dist-packages/libtbx/command_line/__init__.py usr/lib/python3.14/dist-packages/libtbx/command_line/add_docstrings_with_ai.py usr/lib/python3.14/dist-packages/libtbx/command_line/analyse_code_comments.py usr/lib/python3.14/dist-packages/libtbx/command_line/any2unix.py usr/lib/python3.14/dist-packages/libtbx/command_line/assert_line_count.py usr/lib/python3.14/dist-packages/libtbx/command_line/assert_not_show_diff.py usr/lib/python3.14/dist-packages/libtbx/command_line/assert_stdin.py usr/lib/python3.14/dist-packages/libtbx/command_line/assert_stdin_contains_strings.py usr/lib/python3.14/dist-packages/libtbx/command_line/assert_stdin_ends_with.py usr/lib/python3.14/dist-packages/libtbx/command_line/bootstrap.py usr/lib/python3.14/dist-packages/libtbx/command_line/bundle_as_exe.py usr/lib/python3.14/dist-packages/libtbx/command_line/cctbx_chunk.py usr/lib/python3.14/dist-packages/libtbx/command_line/check_libcpp.py usr/lib/python3.14/dist-packages/libtbx/command_line/clean_clutter.py usr/lib/python3.14/dist-packages/libtbx/command_line/clear_paths.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_cctbx_bundle_for_installer.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_install_script_bat.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_installer.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_mac_app.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_selfx.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_unzipsfx.py usr/lib/python3.14/dist-packages/libtbx/command_line/create_windows_exe.py usr/lib/python3.14/dist-packages/libtbx/command_line/dtrace.py usr/lib/python3.14/dist-packages/libtbx/command_line/easy_qsub.py usr/lib/python3.14/dist-packages/libtbx/command_line/env_run.py usr/lib/python3.14/dist-packages/libtbx/command_line/epydoc_run.py usr/lib/python3.14/dist-packages/libtbx/command_line/extract_code_from_txt.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_clutter.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_files.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_in_repositories.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_old_style_classes.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_pdb_mmcif_problems.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_reserved_names.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_under_build.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_untested.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_unused_imports.py usr/lib/python3.14/dist-packages/libtbx/command_line/find_unused_imports_crude.py usr/lib/python3.14/dist-packages/libtbx/command_line/git_avoid_merges.py usr/lib/python3.14/dist-packages/libtbx/command_line/help.py usr/lib/python3.14/dist-packages/libtbx/command_line/import_all_ext.py usr/lib/python3.14/dist-packages/libtbx/command_line/import_all_python.py usr/lib/python3.14/dist-packages/libtbx/command_line/install.py usr/lib/python3.14/dist-packages/libtbx/command_line/install_conda.py usr/lib/python3.14/dist-packages/libtbx/command_line/ipython_shell_start.py usr/lib/python3.14/dist-packages/libtbx/command_line/line_count.py usr/lib/python3.14/dist-packages/libtbx/command_line/list_files.py usr/lib/python3.14/dist-packages/libtbx/command_line/list_modules.py usr/lib/python3.14/dist-packages/libtbx/command_line/list_source_files_sorted_by_size.py usr/lib/python3.14/dist-packages/libtbx/command_line/make_dist.py usr/lib/python3.14/dist-packages/libtbx/command_line/make_sphinx_html.py usr/lib/python3.14/dist-packages/libtbx/command_line/nequal.py usr/lib/python3.14/dist-packages/libtbx/command_line/parallel_simple.py usr/lib/python3.14/dist-packages/libtbx/command_line/path_utility.py usr/lib/python3.14/dist-packages/libtbx/command_line/phil.py usr/lib/python3.14/dist-packages/libtbx/command_line/prime_factors_of.py usr/lib/python3.14/dist-packages/libtbx/command_line/printenv.py usr/lib/python3.14/dist-packages/libtbx/command_line/py_compile_all.py usr/lib/python3.14/dist-packages/libtbx/command_line/raise_exception_for_testing.py usr/lib/python3.14/dist-packages/libtbx/command_line/reindent.py usr/lib/python3.14/dist-packages/libtbx/command_line/remote_processing.py usr/lib/python3.14/dist-packages/libtbx/command_line/remove_tree.py usr/lib/python3.14/dist-packages/libtbx/command_line/remove_unused_imports.py usr/lib/python3.14/dist-packages/libtbx/command_line/resource_monitor_plot.py usr/lib/python3.14/dist-packages/libtbx/command_line/run_pickled_function.py usr/lib/python3.14/dist-packages/libtbx/command_line/run_tests_parallel.py usr/lib/python3.14/dist-packages/libtbx/command_line/scons.py usr/lib/python3.14/dist-packages/libtbx/command_line/seconds_since_the_epoch.py usr/lib/python3.14/dist-packages/libtbx/command_line/sge_available_slots.py usr/lib/python3.14/dist-packages/libtbx/command_line/sge_qstat_counts.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_all_on_path.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_bin_path.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_build_options.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_build_path.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_but_no_repr.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_commands.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_date_and_time.py 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usr/lib/python3.14/dist-packages/libtbx/command_line/show_pythonpath.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_repository_paths.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_tests.py usr/lib/python3.14/dist-packages/libtbx/command_line/show_variable_names.py usr/lib/python3.14/dist-packages/libtbx/command_line/sphinx_build.py usr/lib/python3.14/dist-packages/libtbx/command_line/start_binary_bundle.py usr/lib/python3.14/dist-packages/libtbx/command_line/start_process.py usr/lib/python3.14/dist-packages/libtbx/command_line/wait_for_file.py usr/lib/python3.14/dist-packages/libtbx/development/ usr/lib/python3.14/dist-packages/libtbx/development/__init__.py usr/lib/python3.14/dist-packages/libtbx/development/except_Exception.py usr/lib/python3.14/dist-packages/libtbx/development/timers.py usr/lib/python3.14/dist-packages/libtbx/development/xcode_build_phase.py usr/lib/python3.14/dist-packages/libtbx/jobs/ 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usr/lib/python3.14/dist-packages/libtbx/langchain/run_build_db.py usr/lib/python3.14/dist-packages/libtbx/langchain/run_inspect_db.py usr/lib/python3.14/dist-packages/libtbx/langchain/run_query_docs.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/ usr/lib/python3.14/dist-packages/libtbx/langchain/agent/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/advice_preprocessor.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/api_client.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/best_files_tracker.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/command_builder.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/command_postprocessor.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/config_loader.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/contract.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/directive_extractor.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/directive_validator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/display_data_model.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/docs_tools.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/dry_run_manager.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/error_analyzer.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/error_classifier.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/event_formatter.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/event_log.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/failure_diagnoser.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/file_metadata.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/file_utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/format_validation.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/gate_evaluator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/generate_logic_doc.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/generate_safety_docs.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/graph.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/graph_nodes.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/graph_state.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/hypothesis_evaluator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/intent_classifier.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/kb_tags.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/log_section_extractor.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/memory.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/metric_evaluator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/metrics_analyzer.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/mtz_inspector.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/nl_to_phil.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/pattern_manager.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/perceive_checks.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/phenix_utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/phil_validator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/placement_checker.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/plan_generator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/planner.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/program_registry.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/program_validator.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/r_factors.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/rate_limit_handler.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/raw_advice_scanner.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/rules_selector.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/sanity_checker.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/session.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/session_tools.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/strategy_memory.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/structure_model.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/template_builder.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/thinking_agent.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/transport.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/tst_agent_enhancements.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/validation_history.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/validation_inspector.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/workflow_engine.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/workflow_state.py usr/lib/python3.14/dist-packages/libtbx/langchain/agent/yaml_tools.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/ usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/agent_session_analyzer.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/analysis_request.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/analyzer.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/log_info.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/orientation_strip.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/program_identity.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/report_verifier.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/state_extractor.py usr/lib/python3.14/dist-packages/libtbx/langchain/analysis/summarizer.py usr/lib/python3.14/dist-packages/libtbx/langchain/commands/ usr/lib/python3.14/dist-packages/libtbx/langchain/commands/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/commands/base.py usr/lib/python3.14/dist-packages/libtbx/langchain/core/ usr/lib/python3.14/dist-packages/libtbx/langchain/core/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/core/_build_info.py usr/lib/python3.14/dist-packages/libtbx/langchain/core/_version.py usr/lib/python3.14/dist-packages/libtbx/langchain/core/llm.py usr/lib/python3.14/dist-packages/libtbx/langchain/core/types.py usr/lib/python3.14/dist-packages/libtbx/langchain/examples/ usr/lib/python3.14/dist-packages/libtbx/langchain/examples/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/ usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/api_schema.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/explanation_prompts.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/html_report_template.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/kb_loader.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/metric_patterns.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/phenix_programs.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/plan_schema.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/plan_template_loader.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/program_registration.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/prompts.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/prompts_hybrid.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/summary_display.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/thinking_prompts.py usr/lib/python3.14/dist-packages/libtbx/langchain/knowledge/yaml_loader.py usr/lib/python3.14/dist-packages/libtbx/langchain/log_extraction/ usr/lib/python3.14/dist-packages/libtbx/langchain/log_extraction/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/log_extraction/corpus_paths.py usr/lib/python3.14/dist-packages/libtbx/langchain/log_extraction/log_structure_extractor.py usr/lib/python3.14/dist-packages/libtbx/langchain/log_extraction/run_controls.py usr/lib/python3.14/dist-packages/libtbx/langchain/log_extraction/run_measurements.py usr/lib/python3.14/dist-packages/libtbx/langchain/log_extraction/validate.py usr/lib/python3.14/dist-packages/libtbx/langchain/rag/ usr/lib/python3.14/dist-packages/libtbx/langchain/rag/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/rag/_chroma_resilience.py usr/lib/python3.14/dist-packages/libtbx/langchain/rag/document_loader.py usr/lib/python3.14/dist-packages/libtbx/langchain/rag/retriever.py usr/lib/python3.14/dist-packages/libtbx/langchain/rag/vector_store.py usr/lib/python3.14/dist-packages/libtbx/langchain/strategies/ usr/lib/python3.14/dist-packages/libtbx/langchain/strategies/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/strategies/base.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/ usr/lib/python3.14/dist-packages/libtbx/langchain/tests/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/analyze_tutorial_runs.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/audit_phase_rename.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/canary_utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/run_all_tests.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/test_api_keys.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_abort_message_all_stops.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_action_item_1.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_advice_preprocessing.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_after_program_fill_from_raw.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_after_program_prompt.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_agent_build_info.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_analysis_request.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_api_schema.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_audit_fixes.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_autobuild_hl_recovery.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_autobuild_sequence_waiver.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_autosol_bugs.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_backward_compat.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_best_files_tracker.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_build_experiment_type_and_rfree.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_canary.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_cc_key_extraction.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_classify_mtz_type_001.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_command_builder.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_contract_compliance.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_copies_tracking.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_cryoem_metric_evaluator_validation.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_cryoem_stop_validation.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_data_input_filter.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_decision_flow.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_default_models.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_density_modify_experiment_type.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_dependencies.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_diagnosed_failure_stop.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_diagnostic_messages.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directive_extractor.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directive_extractor_behavior_regression.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directive_extractor_grounding.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directive_extractor_sentinel_space_group.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directive_layer_diagnostics.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directive_validation.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directive_validator.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directive_validator_typo_hints.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_directives_integration.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_display_data_model.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_dock_and_stop.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_docs_tools.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_dry_run.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_error_analyzer.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_error_classifier.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_event_formatter_file_categories.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_event_system.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_explanation_prompts.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_extended_stop_phrasings.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_extract_raw_advice.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_extraction_failure_visibility.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_fabricated_stop_condition.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_file_categorization.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_file_categorizer.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_file_encoding.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_file_utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_fix_verification.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_force_no_ai_server.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_gate_evaluator.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_general_resolver.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_grounding_stop_after_requested.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_h17_strip_executor.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_h18_1_phil_roundtrip.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_halfmap_sigmaa_inventory.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_hardcoded_cleanup.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_history_analysis.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_hypothesis_evaluator.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_initialize_plan_smoke.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_input_mtz_has_rfree_plumbing.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_integration.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_intent_classifier.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_langchain_tools.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_ligand_workflow_restart.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_ligandfit_patterns.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_llm_unavailable_notice.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_log_extractor.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_log_structure_extractor.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_metric_patterns.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_metrics_analyzer.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_mode_isolation.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_mtz_crosscheck.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_mtz_phases_session_blocking.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_n_bugs.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_new_programs.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_obs_labels_auto_fill.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_old_client_compat.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_optional_dep_resilience.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_pattern_manager.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_perceive_stop_checks.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phase0_static_audit.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phase1_contract_gaps.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phase2_path_consistency.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phase2b_activation.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phase3_bug5.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phase3_serialization_symmetry.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phase3d_motivating_tutorial.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phase4_history_flags.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phase5_error_classification.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phase6_category_consumer.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phase7_routing_simulation.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phase8_command_building.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phase9_llm_perturbation.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phaser_multimodel.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phil_namespace_cleaner.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_phil_validation.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_placement_skip_rebuild.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_plan_autostop_validation_suppression.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_plan_catchup_failure_semantics.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_plan_generator.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_plan_lead_program_offer.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_plan_schema.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_planning_framework.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_portkey_embedding_model.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_predict_and_build_no_ncs.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_preprocessor_file_override.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_program_identity.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_program_registration.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_program_requirements.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_protocol_version.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_provider_error_classification.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_provider_lock.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_raw_advice_scanner.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_reactive_deviation_hold.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_reasoning_command_divergence.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_rebuild_template_selection.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_refine_final_rfree.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_report_verifier.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_resolve_cryo_em_ncs_inject.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_resume_reopen_stages.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_rfree_flags_missing.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_rfree_generate_guard.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_rfree_lock_reconciliation.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_rfree_resolution_stop.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_safe_float_consolidation.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_sanity_checker.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_scenario_tracer.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_sequence_only_routing.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_session_directives.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_session_summary.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_session_tools.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_settings_list_coercion.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_shared_code_imports.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_silent_stop_abort_messages.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_simple_extractor_validation.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_skip_promotion.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_skip_to_program.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_solve_action_keywords.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_space_group_validation.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_spurious_stop_after_requested.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_standalone_consistency.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_state_serialization.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_step1f_single_emit.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_stop_condition_false_positive.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_stop_condition_fix.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_stop_reason_codes.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_stop_reason_prompt.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_strategy_memory.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_structure_model.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_summary_display.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_summary_file.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_supported_providers_single_source.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_template.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_thinking_agent.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_thinking_defense.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_transport.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_transport_surfaces.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_user_advice_filter.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_v112_13_fixes.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_v120_providers.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_validate_file_overrides.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_validate_step_after_program_guard.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_validation_history.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_workflow_complete_stop.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_workflow_state.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_yaml_config.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/tst_yaml_tools.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/integration/ usr/lib/python3.14/dist-packages/libtbx/langchain/tests/integration/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/ usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/canary_check.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/framework.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/run_llm_tests.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/tst_a1_extractor_smoke.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/tst_b1_stop_after_requested.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/tst_b2_gated_wipe_planning.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/tst_c1_raw_authority.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/tst_directive_extraction.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/tst_framework_self.py usr/lib/python3.14/dist-packages/libtbx/langchain/tests/llm/tst_planning.py usr/lib/python3.14/dist-packages/libtbx/langchain/utils/ usr/lib/python3.14/dist-packages/libtbx/langchain/utils/__init__.py usr/lib/python3.14/dist-packages/libtbx/langchain/utils/query.py usr/lib/python3.14/dist-packages/libtbx/langchain/utils/run_utils.py usr/lib/python3.14/dist-packages/libtbx/langchain/utils/text_processing.py usr/lib/python3.14/dist-packages/libtbx/phil/ usr/lib/python3.14/dist-packages/libtbx/phil/__init__.py usr/lib/python3.14/dist-packages/libtbx/phil/command_line.py usr/lib/python3.14/dist-packages/libtbx/phil/experimental.py usr/lib/python3.14/dist-packages/libtbx/phil/gui_objects.py usr/lib/python3.14/dist-packages/libtbx/phil/interface.py usr/lib/python3.14/dist-packages/libtbx/phil/parser.py usr/lib/python3.14/dist-packages/libtbx/phil/tokenizer.py usr/lib/python3.14/dist-packages/libtbx/phil/tst.py usr/lib/python3.14/dist-packages/libtbx/phil/tst_experimental.py usr/lib/python3.14/dist-packages/libtbx/phil/tst_interface.py usr/lib/python3.14/dist-packages/libtbx/phil/tst_tokenizer.py usr/lib/python3.14/dist-packages/libtbx/program_utils/ usr/lib/python3.14/dist-packages/libtbx/program_utils/__init__.py usr/lib/python3.14/dist-packages/libtbx/program_utils/result.py usr/lib/python3.14/dist-packages/libtbx/program_utils/statistics_info.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/ usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/__init__.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/communication.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/generic.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/looping.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/lsf.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/pbs_utils.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/remote.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/scheduling.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/scheduling_helpers.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/sge_utils.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/tst.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/ usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/__init__.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/errors.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/polling.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/status.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/submission.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/transfer.py usr/lib/python3.14/dist-packages/libtbx/queuing_system_utils/processing/util.py usr/lib/python3.14/dist-packages/libtbx/scheduling/ usr/lib/python3.14/dist-packages/libtbx/scheduling/__init__.py usr/lib/python3.14/dist-packages/libtbx/scheduling/cluster_handler.py usr/lib/python3.14/dist-packages/libtbx/scheduling/file_queue.py usr/lib/python3.14/dist-packages/libtbx/scheduling/job_scheduler.py usr/lib/python3.14/dist-packages/libtbx/scheduling/mainthread.py usr/lib/python3.14/dist-packages/libtbx/scheduling/mp_handler.py usr/lib/python3.14/dist-packages/libtbx/scheduling/parallel_for.py usr/lib/python3.14/dist-packages/libtbx/scheduling/philgen.py usr/lib/python3.14/dist-packages/libtbx/scheduling/process_pool.py usr/lib/python3.14/dist-packages/libtbx/scheduling/result.py usr/lib/python3.14/dist-packages/libtbx/scheduling/shared_resource.py usr/lib/python3.14/dist-packages/libtbx/scheduling/socket_queue.py usr/lib/python3.14/dist-packages/libtbx/scheduling/stacktrace.py usr/lib/python3.14/dist-packages/libtbx/scheduling/thread_handler.py usr/lib/python3.14/dist-packages/libtbx/server/ usr/lib/python3.14/dist-packages/libtbx/server/FileClient.py usr/lib/python3.14/dist-packages/libtbx/server/FileServer.py usr/lib/python3.14/dist-packages/libtbx/server/FileSocket.py usr/lib/python3.14/dist-packages/libtbx/server/SocketServer.py usr/lib/python3.14/dist-packages/libtbx/server/StartServer.py usr/lib/python3.14/dist-packages/libtbx/server/__init__.py usr/lib/python3.14/dist-packages/libtbx/sphinx/ usr/lib/python3.14/dist-packages/libtbx/sphinx/__init__.py usr/lib/python3.14/dist-packages/libtbx/sphinx/phil.py usr/lib/python3.14/dist-packages/libtbx/sphinx/pubmed.py usr/lib/python3.14/dist-packages/libtbx/sphinx/python_string.py usr/lib/python3.14/dist-packages/libtbx/test_utils/ usr/lib/python3.14/dist-packages/libtbx/test_utils/__init__.py usr/lib/python3.14/dist-packages/libtbx/test_utils/parallel.py usr/lib/python3.14/dist-packages/libtbx/test_utils/t96_roster.py usr/lib/python3.14/dist-packages/mmtbx/ usr/lib/python3.14/dist-packages/mmtbx/__init__.py usr/lib/python3.14/dist-packages/mmtbx/arrays.py usr/lib/python3.14/dist-packages/mmtbx/clashes.py usr/lib/python3.14/dist-packages/mmtbx/domains_from_pae.py usr/lib/python3.14/dist-packages/mmtbx/f_model_info.py usr/lib/python3.14/dist-packages/mmtbx/find_peaks.py usr/lib/python3.14/dist-packages/mmtbx/grow_density.py usr/lib/python3.14/dist-packages/mmtbx/invariant_domain.py usr/lib/python3.14/dist-packages/mmtbx/lattice.py usr/lib/python3.14/dist-packages/mmtbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/mmtbx/map_tools.py usr/lib/python3.14/dist-packages/mmtbx/model_vs_data.py usr/lib/python3.14/dist-packages/mmtbx/msa.py usr/lib/python3.14/dist-packages/mmtbx/pdb_distances.py usr/lib/python3.14/dist-packages/mmtbx/pdb_symmetry.py usr/lib/python3.14/dist-packages/mmtbx/pdbtools.py usr/lib/python3.14/dist-packages/mmtbx/process_predicted_model.py usr/lib/python3.14/dist-packages/mmtbx/proq2.py usr/lib/python3.14/dist-packages/mmtbx/real_space_correlation.py usr/lib/python3.14/dist-packages/mmtbx/resolve_resources.py usr/lib/python3.14/dist-packages/mmtbx/restraints.py usr/lib/python3.14/dist-packages/mmtbx/run_tests.py usr/lib/python3.14/dist-packages/mmtbx/superpose.py usr/lib/python3.14/dist-packages/mmtbx/xmanip.py usr/lib/python3.14/dist-packages/mmtbx/xmanip_tasks.py usr/lib/python3.14/dist-packages/mmtbx/alignment/ usr/lib/python3.14/dist-packages/mmtbx/alignment/__init__.py usr/lib/python3.14/dist-packages/mmtbx/atomic_environment_vectors/ usr/lib/python3.14/dist-packages/mmtbx/atomic_environment_vectors/__init__.py usr/lib/python3.14/dist-packages/mmtbx/atomic_environment_vectors/tst.py usr/lib/python3.14/dist-packages/mmtbx/building/ usr/lib/python3.14/dist-packages/mmtbx/building/__init__.py usr/lib/python3.14/dist-packages/mmtbx/building/cablam_idealization.py usr/lib/python3.14/dist-packages/mmtbx/building/extend_sidechains.py usr/lib/python3.14/dist-packages/mmtbx/building/loop_idealization.py usr/lib/python3.14/dist-packages/mmtbx/building/merge_models.py usr/lib/python3.14/dist-packages/mmtbx/building/minimize_chain.py usr/lib/python3.14/dist-packages/mmtbx/building/tst_extend_sidechains.py usr/lib/python3.14/dist-packages/mmtbx/building/tst_extend_sidechains_2.py usr/lib/python3.14/dist-packages/mmtbx/building/ligands/ usr/lib/python3.14/dist-packages/mmtbx/building/ligands/__init__.py usr/lib/python3.14/dist-packages/mmtbx/building/ligands/lifi.py usr/lib/python3.14/dist-packages/mmtbx/building/ligands/tst_00.py usr/lib/python3.14/dist-packages/mmtbx/building/loop_closure/ usr/lib/python3.14/dist-packages/mmtbx/building/loop_closure/__init__.py usr/lib/python3.14/dist-packages/mmtbx/building/loop_closure/berkeley_ramalyze.py usr/lib/python3.14/dist-packages/mmtbx/building/loop_closure/ccd.py usr/lib/python3.14/dist-packages/mmtbx/building/loop_closure/starting_conformations.py usr/lib/python3.14/dist-packages/mmtbx/building/loop_closure/utils.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/ usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/__init__.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/bulk_solvent_and_scaling.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/example.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/example2.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/f_model_all_scales.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/kbu_refinery.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/mosaic.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/multi_mask_bulk_solvent.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/scaler.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_aniso_scaler.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_flat_nonuniform.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_mosaic.py usr/lib/python3.14/dist-packages/mmtbx/bulk_solvent/tst_scaler.py usr/lib/python3.14/dist-packages/mmtbx/chemical_components/ usr/lib/python3.14/dist-packages/mmtbx/chemical_components/__init__.py usr/lib/python3.14/dist-packages/mmtbx/chemical_components/cif_parser.py usr/lib/python3.14/dist-packages/mmtbx/chemical_components/tst.py usr/lib/python3.14/dist-packages/mmtbx/command_line/ usr/lib/python3.14/dist-packages/mmtbx/command_line/__init__.py usr/lib/python3.14/dist-packages/mmtbx/command_line/altloc_remediate.py usr/lib/python3.14/dist-packages/mmtbx/command_line/angle.py usr/lib/python3.14/dist-packages/mmtbx/command_line/apply_ncs_to_ligand.py usr/lib/python3.14/dist-packages/mmtbx/command_line/arginine_geometry.py usr/lib/python3.14/dist-packages/mmtbx/command_line/atom_valence_simple.py usr/lib/python3.14/dist-packages/mmtbx/command_line/barbed_wire_analysis.py usr/lib/python3.14/dist-packages/mmtbx/command_line/cablam.py usr/lib/python3.14/dist-packages/mmtbx/command_line/cablam_idealization.py usr/lib/python3.14/dist-packages/mmtbx/command_line/cbetadev.py usr/lib/python3.14/dist-packages/mmtbx/command_line/cc_star.py usr/lib/python3.14/dist-packages/mmtbx/command_line/chiral_validation.py usr/lib/python3.14/dist-packages/mmtbx/command_line/cif_as_mtz.py usr/lib/python3.14/dist-packages/mmtbx/command_line/clashscore.py usr/lib/python3.14/dist-packages/mmtbx/command_line/clashscore2.py usr/lib/python3.14/dist-packages/mmtbx/command_line/comparama.py usr/lib/python3.14/dist-packages/mmtbx/command_line/debug_riding.py usr/lib/python3.14/dist-packages/mmtbx/command_line/density_modification.py usr/lib/python3.14/dist-packages/mmtbx/command_line/development_aev.py usr/lib/python3.14/dist-packages/mmtbx/command_line/development_fem.py usr/lib/python3.14/dist-packages/mmtbx/command_line/distance_difference.py usr/lib/python3.14/dist-packages/mmtbx/command_line/dynamics.py usr/lib/python3.14/dist-packages/mmtbx/command_line/electrons.py usr/lib/python3.14/dist-packages/mmtbx/command_line/emringer.py usr/lib/python3.14/dist-packages/mmtbx/command_line/emringer_score.py usr/lib/python3.14/dist-packages/mmtbx/command_line/estimate_bijvoet_ratio.py usr/lib/python3.14/dist-packages/mmtbx/command_line/f000.py usr/lib/python3.14/dist-packages/mmtbx/command_line/fab_elbow_angle.py usr/lib/python3.14/dist-packages/mmtbx/command_line/fake_f_obs.py usr/lib/python3.14/dist-packages/mmtbx/command_line/fetch_pdb.py usr/lib/python3.14/dist-packages/mmtbx/command_line/find_peaks_holes.py usr/lib/python3.14/dist-packages/mmtbx/command_line/find_residue_in_pdb.py usr/lib/python3.14/dist-packages/mmtbx/command_line/find_tls_groups.py usr/lib/python3.14/dist-packages/mmtbx/command_line/fmodel.py usr/lib/python3.14/dist-packages/mmtbx/command_line/fobs_minus_fobs_map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/geometry_minimization.py usr/lib/python3.14/dist-packages/mmtbx/command_line/grow_density.py usr/lib/python3.14/dist-packages/mmtbx/command_line/hbond.py usr/lib/python3.14/dist-packages/mmtbx/command_line/helix_sheet_recs_as_pdb_files.py usr/lib/python3.14/dist-packages/mmtbx/command_line/holton_geometry_validation.py usr/lib/python3.14/dist-packages/mmtbx/command_line/hydrogenate.py usr/lib/python3.14/dist-packages/mmtbx/command_line/kinemage.py usr/lib/python3.14/dist-packages/mmtbx/command_line/ligand_restraints_validation.py usr/lib/python3.14/dist-packages/mmtbx/command_line/map_box.py usr/lib/python3.14/dist-packages/mmtbx/command_line/map_comparison.py usr/lib/python3.14/dist-packages/mmtbx/command_line/map_to_model_histogram.py usr/lib/python3.14/dist-packages/mmtbx/command_line/map_to_structure_factors.py usr/lib/python3.14/dist-packages/mmtbx/command_line/maps.py usr/lib/python3.14/dist-packages/mmtbx/command_line/mask.py usr/lib/python3.14/dist-packages/mmtbx/command_line/massage_data.py usr/lib/python3.14/dist-packages/mmtbx/command_line/matthews.py usr/lib/python3.14/dist-packages/mmtbx/command_line/maximum_entropy_map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/model_idealization.py usr/lib/python3.14/dist-packages/mmtbx/command_line/model_map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/model_model_distances.py usr/lib/python3.14/dist-packages/mmtbx/command_line/model_vs_data.py usr/lib/python3.14/dist-packages/mmtbx/command_line/model_vs_map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/model_vs_sequence.py usr/lib/python3.14/dist-packages/mmtbx/command_line/models_as_chains.py usr/lib/python3.14/dist-packages/mmtbx/command_line/molprobity.py usr/lib/python3.14/dist-packages/mmtbx/command_line/mon_lib_cif_triage.py usr/lib/python3.14/dist-packages/mmtbx/command_line/mp_geo.py usr/lib/python3.14/dist-packages/mmtbx/command_line/mp_validate_bonds.py usr/lib/python3.14/dist-packages/mmtbx/command_line/mtz2map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/next_gen_atom_typing.py usr/lib/python3.14/dist-packages/mmtbx/command_line/next_gen_residue_typing.py usr/lib/python3.14/dist-packages/mmtbx/command_line/nonbonded_overlaps.py usr/lib/python3.14/dist-packages/mmtbx/command_line/omegalyze.py usr/lib/python3.14/dist-packages/mmtbx/command_line/pdb_atom_selection.py usr/lib/python3.14/dist-packages/mmtbx/command_line/pdb_interpretation.py usr/lib/python3.14/dist-packages/mmtbx/command_line/pdbtools.py usr/lib/python3.14/dist-packages/mmtbx/command_line/perigee.py usr/lib/python3.14/dist-packages/mmtbx/command_line/plan_sad_experiment.py usr/lib/python3.14/dist-packages/mmtbx/command_line/polder.py usr/lib/python3.14/dist-packages/mmtbx/command_line/prepare_pdb_deposition.py usr/lib/python3.14/dist-packages/mmtbx/command_line/probe2.py usr/lib/python3.14/dist-packages/mmtbx/command_line/probescore_ligand.py usr/lib/python3.14/dist-packages/mmtbx/command_line/process_predicted_model.py usr/lib/python3.14/dist-packages/mmtbx/command_line/prune_model.py usr/lib/python3.14/dist-packages/mmtbx/command_line/quantum_interface.py usr/lib/python3.14/dist-packages/mmtbx/command_line/r_factor_statistics.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rama_z.py usr/lib/python3.14/dist-packages/mmtbx/command_line/ramalyze.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rank_scale_map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/real_space_correlation.py usr/lib/python3.14/dist-packages/mmtbx/command_line/real_space_diff_map.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rebuild_cablam_cache.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rebuild_rotarama_cache.py usr/lib/python3.14/dist-packages/mmtbx/command_line/reciprocal_space_arrays.py usr/lib/python3.14/dist-packages/mmtbx/command_line/reduce2.py usr/lib/python3.14/dist-packages/mmtbx/command_line/reduce_cryoem_resolution.py usr/lib/python3.14/dist-packages/mmtbx/command_line/refine_anomalous_substructure.py usr/lib/python3.14/dist-packages/mmtbx/command_line/remove_outliers.py usr/lib/python3.14/dist-packages/mmtbx/command_line/ribbons.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rigid_bond_test.py usr/lib/python3.14/dist-packages/mmtbx/command_line/ringer.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rna_validate.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rna_validate_bonds.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rna_validate_puckers.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rna_validate_suites.py usr/lib/python3.14/dist-packages/mmtbx/command_line/rotalyze.py usr/lib/python3.14/dist-packages/mmtbx/command_line/search_pdb_symmetry.py usr/lib/python3.14/dist-packages/mmtbx/command_line/secondary_structure_restraints.py usr/lib/python3.14/dist-packages/mmtbx/command_line/secondary_structure_validation.py usr/lib/python3.14/dist-packages/mmtbx/command_line/select_best_starting_model.py usr/lib/python3.14/dist-packages/mmtbx/command_line/show_r_factors_by_shell.py usr/lib/python3.14/dist-packages/mmtbx/command_line/sisa.py usr/lib/python3.14/dist-packages/mmtbx/command_line/sort_hetatms.py usr/lib/python3.14/dist-packages/mmtbx/command_line/ss_idealization.py usr/lib/python3.14/dist-packages/mmtbx/command_line/suitename.py usr/lib/python3.14/dist-packages/mmtbx/command_line/suitename_old.py usr/lib/python3.14/dist-packages/mmtbx/command_line/super.py usr/lib/python3.14/dist-packages/mmtbx/command_line/superpose.py usr/lib/python3.14/dist-packages/mmtbx/command_line/taam_minus_iam.py usr/lib/python3.14/dist-packages/mmtbx/command_line/table_one.py usr/lib/python3.14/dist-packages/mmtbx/command_line/tls.py usr/lib/python3.14/dist-packages/mmtbx/command_line/tls_analysis.py usr/lib/python3.14/dist-packages/mmtbx/command_line/tls_as_xyz.py usr/lib/python3.14/dist-packages/mmtbx/command_line/undowser.py usr/lib/python3.14/dist-packages/mmtbx/command_line/undowser2.py usr/lib/python3.14/dist-packages/mmtbx/command_line/validate_H_cl_app.py usr/lib/python3.14/dist-packages/mmtbx/command_line/validate_ligands.py usr/lib/python3.14/dist-packages/mmtbx/command_line/validation_summary.py usr/lib/python3.14/dist-packages/mmtbx/command_line/verify_mon_lib_data.py usr/lib/python3.14/dist-packages/mmtbx/command_line/water_b_factors.py usr/lib/python3.14/dist-packages/mmtbx/command_line/where_is_that_cif_file.py usr/lib/python3.14/dist-packages/mmtbx/command_line/xmanip.py usr/lib/python3.14/dist-packages/mmtbx/command_line/xtrapol8.py usr/lib/python3.14/dist-packages/mmtbx/command_line/xtriage.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/ usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/LinkedResidues.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/__init__.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/altloc_weighting.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/bond_angle_registry.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/cdl_database.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/cdl_setup.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/cdl_svl_database.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/cdl_utils.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/check_cdl_database.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/density_dependent_restraints.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/enol_peptide_restraints.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/histidines.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/hpdl_database.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/hydrogen_bonding.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/investigate_rotamer_space.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/mcl.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/mcl_sf4_coordination.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/metal_coordination_library.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/multi_base_class.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/multi_residue_cdl_class.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/multi_residue_class.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/nucleotides.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/omega.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/omega_database.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/pH_dependent_restraints.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/rdl_database.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/rotamers.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/sf4_restraints.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/testing_utils.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_cdl.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_cdl_esd.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_enol_peptide.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_hpdl.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_01.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_02.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_03.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_multi_residue_rna.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_mutli_residue.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_omega_cdl.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_pH_mechanism.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_rdl.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py usr/lib/python3.14/dist-packages/mmtbx/conformation_dependent_library/utils.py usr/lib/python3.14/dist-packages/mmtbx/den/ usr/lib/python3.14/dist-packages/mmtbx/den/__init__.py usr/lib/python3.14/dist-packages/mmtbx/den/plot_weights.py usr/lib/python3.14/dist-packages/mmtbx/den/refinement.py usr/lib/python3.14/dist-packages/mmtbx/density_modification/ usr/lib/python3.14/dist-packages/mmtbx/density_modification/__init__.py usr/lib/python3.14/dist-packages/mmtbx/density_modification/tst_density_modification.py usr/lib/python3.14/dist-packages/mmtbx/disorder/ usr/lib/python3.14/dist-packages/mmtbx/disorder/__init__.py usr/lib/python3.14/dist-packages/mmtbx/disorder/analyze_model.py usr/lib/python3.14/dist-packages/mmtbx/disorder/backbone.py usr/lib/python3.14/dist-packages/mmtbx/disorder/tst.py usr/lib/python3.14/dist-packages/mmtbx/disorder/tst_analyze_model.py usr/lib/python3.14/dist-packages/mmtbx/disorder/tst_backbone.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/ usr/lib/python3.14/dist-packages/mmtbx/dynamics/__init__.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/cartesian_dynamics.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/constants.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/ensemble_cd.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/simulated_annealing.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/tst_cartesian_dynamics.py usr/lib/python3.14/dist-packages/mmtbx/dynamics/tst_sa.py usr/lib/python3.14/dist-packages/mmtbx/f_model/ usr/lib/python3.14/dist-packages/mmtbx/f_model/__init__.py usr/lib/python3.14/dist-packages/mmtbx/f_model/f_model.py usr/lib/python3.14/dist-packages/mmtbx/f_model/f_model_info.py usr/lib/python3.14/dist-packages/mmtbx/geometry/ usr/lib/python3.14/dist-packages/mmtbx/geometry/__init__.py usr/lib/python3.14/dist-packages/mmtbx/geometry/altloc.py usr/lib/python3.14/dist-packages/mmtbx/geometry/asa.py usr/lib/python3.14/dist-packages/mmtbx/geometry/clash.py usr/lib/python3.14/dist-packages/mmtbx/geometry/indexing.py usr/lib/python3.14/dist-packages/mmtbx/geometry/shared_types.py usr/lib/python3.14/dist-packages/mmtbx/geometry/sphere_surface_sampling.py usr/lib/python3.14/dist-packages/mmtbx/geometry/topology.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/ usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/__init__.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/afitt.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/base_qm_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/c_beta.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/external.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/geo_file_parsing.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/mopac_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/orca_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/qi_utils.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/qm_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/quantum_interface.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/quantum_restraints_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/ramachandran.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/reference.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_c_beta_restraints.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_geo_file_parsing.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_orca_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_ramachandran.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_reference_coordinate.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_reference_coordinate2.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_replace_in_place.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/tst_xtb_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/xtb_manager.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/ usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/__init__.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/reference_model.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_hbond.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_ramachandran.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_ter_records.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py usr/lib/python3.14/dist-packages/mmtbx/geometry_restraints/torsion_restraints/utils.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/ usr/lib/python3.14/dist-packages/mmtbx/hydrogens/__init__.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/build_hydrogens.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/connectivity.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/neutron_utils.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/parameterization.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/reduce_hydrogen.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/riding.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/specialised_hydrogen_atoms.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_1.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_10.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_11.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_12.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_13.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_14.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_15.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_16.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_2.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_3.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_4.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_5.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_6.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_7.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_8.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_9.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_time.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_connectivity.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_const_dihedral.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_1.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_2.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_3.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_4.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_5.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_6.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_7.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_8.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_parameterization_9.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_coefficients.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_fd_1.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_fd_2.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_fd_3.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_fd_4.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_fd_5.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_manager.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_riding_minimize.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/tst_validate_H.py usr/lib/python3.14/dist-packages/mmtbx/hydrogens/validate_H.py usr/lib/python3.14/dist-packages/mmtbx/ias/ usr/lib/python3.14/dist-packages/mmtbx/ias/__init__.py usr/lib/python3.14/dist-packages/mmtbx/ias/tst_ias.py usr/lib/python3.14/dist-packages/mmtbx/idealized_aa_residues/ usr/lib/python3.14/dist-packages/mmtbx/idealized_aa_residues/__init__.py usr/lib/python3.14/dist-packages/mmtbx/idealized_aa_residues/all_his.py usr/lib/python3.14/dist-packages/mmtbx/idealized_aa_residues/rotamer_manager.py usr/lib/python3.14/dist-packages/mmtbx/idealized_aa_residues/sample_rotamers.py usr/lib/python3.14/dist-packages/mmtbx/idealized_aa_residues/tst.py usr/lib/python3.14/dist-packages/mmtbx/ions/ usr/lib/python3.14/dist-packages/mmtbx/ions/__init__.py usr/lib/python3.14/dist-packages/mmtbx/ions/build.py usr/lib/python3.14/dist-packages/mmtbx/ions/environment.py usr/lib/python3.14/dist-packages/mmtbx/ions/geometry.py usr/lib/python3.14/dist-packages/mmtbx/ions/halides.py usr/lib/python3.14/dist-packages/mmtbx/ions/identify.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_environment.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_geometries.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_parameters.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_pick_approx_zn.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_pick_ca.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_pick_ca_svm.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_pick_k.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_pick_mg.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_pickle.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_symmetry_axis.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_utils.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_validate_ca.py usr/lib/python3.14/dist-packages/mmtbx/ions/tst_validate_mg.py usr/lib/python3.14/dist-packages/mmtbx/ions/utils.py usr/lib/python3.14/dist-packages/mmtbx/ions/svm/ usr/lib/python3.14/dist-packages/mmtbx/ions/svm/__init__.py usr/lib/python3.14/dist-packages/mmtbx/ions/svm/dump_sites.py usr/lib/python3.14/dist-packages/mmtbx/ions/svm/tst_classifier_01.py usr/lib/python3.14/dist-packages/mmtbx/ions/svm/tst_classifier_02.py usr/lib/python3.14/dist-packages/mmtbx/ions/svm/utils.py usr/lib/python3.14/dist-packages/mmtbx/kinemage/ usr/lib/python3.14/dist-packages/mmtbx/kinemage/__init__.py usr/lib/python3.14/dist-packages/mmtbx/kinemage/nrubs.py usr/lib/python3.14/dist-packages/mmtbx/kinemage/ribbon_rendering.py usr/lib/python3.14/dist-packages/mmtbx/kinemage/ribbons.py usr/lib/python3.14/dist-packages/mmtbx/kinemage/tst_validation.py usr/lib/python3.14/dist-packages/mmtbx/kinemage/validation.py usr/lib/python3.14/dist-packages/mmtbx/ligands/ usr/lib/python3.14/dist-packages/mmtbx/ligands/__init__.py usr/lib/python3.14/dist-packages/mmtbx/ligands/chemistry.py usr/lib/python3.14/dist-packages/mmtbx/ligands/electrons.py usr/lib/python3.14/dist-packages/mmtbx/ligands/hierarchy_utils.py usr/lib/python3.14/dist-packages/mmtbx/ligands/rdkit_utils.py usr/lib/python3.14/dist-packages/mmtbx/ligands/ready_set_basics.py usr/lib/python3.14/dist-packages/mmtbx/ligands/ready_set_utils.py usr/lib/python3.14/dist-packages/mmtbx/ligands/tst_electron_scripting.py usr/lib/python3.14/dist-packages/mmtbx/ligands/tst_ready_set_utils.py usr/lib/python3.14/dist-packages/mmtbx/ligands/tst_xtal_screens.py usr/lib/python3.14/dist-packages/mmtbx/ligands/xtal_screens.py usr/lib/python3.14/dist-packages/mmtbx/maps/ usr/lib/python3.14/dist-packages/mmtbx/maps/__init__.py usr/lib/python3.14/dist-packages/mmtbx/maps/composite_omit_map.py usr/lib/python3.14/dist-packages/mmtbx/maps/correlation.py usr/lib/python3.14/dist-packages/mmtbx/maps/fem.py usr/lib/python3.14/dist-packages/mmtbx/maps/fobs_minus_fobs_map.py usr/lib/python3.14/dist-packages/mmtbx/maps/kick.py usr/lib/python3.14/dist-packages/mmtbx/maps/map_model_cc.py usr/lib/python3.14/dist-packages/mmtbx/maps/mtriage.py usr/lib/python3.14/dist-packages/mmtbx/maps/polder.py usr/lib/python3.14/dist-packages/mmtbx/maps/superpose.py usr/lib/python3.14/dist-packages/mmtbx/maps/tst_composite_omit_map.py usr/lib/python3.14/dist-packages/mmtbx/maps/tst_composite_omit_map_2.py usr/lib/python3.14/dist-packages/mmtbx/maps/tst_composite_omit_map_3.py usr/lib/python3.14/dist-packages/mmtbx/maps/tst_correlation.py usr/lib/python3.14/dist-packages/mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py usr/lib/python3.14/dist-packages/mmtbx/maps/utils.py usr/lib/python3.14/dist-packages/mmtbx/maps/xtrapol8.py usr/lib/python3.14/dist-packages/mmtbx/masks/ usr/lib/python3.14/dist-packages/mmtbx/masks/__init__.py usr/lib/python3.14/dist-packages/mmtbx/masks/tst_asu_mask.py usr/lib/python3.14/dist-packages/mmtbx/masks/tst_masks.py usr/lib/python3.14/dist-packages/mmtbx/max_lik/ usr/lib/python3.14/dist-packages/mmtbx/max_lik/__init__.py usr/lib/python3.14/dist-packages/mmtbx/max_lik/max_like_non_uniform.py usr/lib/python3.14/dist-packages/mmtbx/max_lik/maxlik.py usr/lib/python3.14/dist-packages/mmtbx/max_lik/tst_max_lik.py usr/lib/python3.14/dist-packages/mmtbx/max_lik/tst_maxlik.py usr/lib/python3.14/dist-packages/mmtbx/model/ usr/lib/python3.14/dist-packages/mmtbx/model/__init__.py usr/lib/python3.14/dist-packages/mmtbx/model/model.py usr/lib/python3.14/dist-packages/mmtbx/model/restraints.py usr/lib/python3.14/dist-packages/mmtbx/model/statistics.py usr/lib/python3.14/dist-packages/mmtbx/model/utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/ usr/lib/python3.14/dist-packages/mmtbx/monomer_library/__init__.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/bondlength_defaults.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/cif_triage.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/cif_types.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/conformation_dependent_restraints.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/conv_v2_v3.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/correct_hydrogen_geometries.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/geostd_utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/glyco_chiral_values.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/glyco_utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/hydrogen_restrictions.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/idealized_aa.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/linking_mixins.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/linking_setup.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/linking_utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/mmtbx_utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/pdb_interpretation.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/populate_auto_linking_origin_ids.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/rna_sugar_pucker_analysis.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/rotamer_utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/server.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_all_cif_files.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_carbo_linking.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_chg.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_cif_triage.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_cif_types.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_correct_hydrogens.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_deuterium_terminii.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_geo_reduce_for_tardy.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_glyco_coordination.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_glyco_hand.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_idealized_aa.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_iron_sulfur_clusters.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_linking.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_metal_coordination.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_motif.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_neutron_distance.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_paral_geo.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_2.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_3.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_4.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_5.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_protein_interpretation.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_rna_dna_interpretation.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_rotamer_utils.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_selection.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_server.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_superpose_ideal.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py usr/lib/python3.14/dist-packages/mmtbx/monomer_library/tst_user_supplied_library.py usr/lib/python3.14/dist-packages/mmtbx/nci/ usr/lib/python3.14/dist-packages/mmtbx/nci/__init__.py usr/lib/python3.14/dist-packages/mmtbx/nci/data_filtering.py usr/lib/python3.14/dist-packages/mmtbx/nci/hbond.py usr/lib/python3.14/dist-packages/mmtbx/nci/skew_kurt_plot.py usr/lib/python3.14/dist-packages/mmtbx/nci/tst_hbond.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ usr/lib/python3.14/dist-packages/mmtbx/ncs/__init__.py usr/lib/python3.14/dist-packages/mmtbx/ncs/cartesian_restraints.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ligands.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ncs.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ncs_params.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ncs_restraints_group_list.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ncs_search.py usr/lib/python3.14/dist-packages/mmtbx/ncs/ncs_utils.py usr/lib/python3.14/dist-packages/mmtbx/ncs/tncs.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/ usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/__init__.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/pair_interaction.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/tst_00.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/tst_01.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/tst_02.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/tst_03.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/tst_04.py usr/lib/python3.14/dist-packages/mmtbx/pair_interaction/tst_05.py usr/lib/python3.14/dist-packages/mmtbx/polygon/ usr/lib/python3.14/dist-packages/mmtbx/polygon/__init__.py usr/lib/python3.14/dist-packages/mmtbx/polygon/output.py usr/lib/python3.14/dist-packages/mmtbx/polygon/tst.py usr/lib/python3.14/dist-packages/mmtbx/polygon/tst_gui.py usr/lib/python3.14/dist-packages/mmtbx/polygon/tst_polygon_data.py usr/lib/python3.14/dist-packages/mmtbx/probe/ usr/lib/python3.14/dist-packages/mmtbx/probe/AtomTypes.py usr/lib/python3.14/dist-packages/mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py usr/lib/python3.14/dist-packages/mmtbx/probe/Helpers.py usr/lib/python3.14/dist-packages/mmtbx/probe/__init__.py usr/lib/python3.14/dist-packages/mmtbx/probe/tst_mmtbx_probe_ext.py usr/lib/python3.14/dist-packages/mmtbx/programs/ usr/lib/python3.14/dist-packages/mmtbx/programs/__init__.py usr/lib/python3.14/dist-packages/mmtbx/programs/arginine_geometry.py usr/lib/python3.14/dist-packages/mmtbx/programs/atom_selection.py usr/lib/python3.14/dist-packages/mmtbx/programs/atom_valence_simple.py usr/lib/python3.14/dist-packages/mmtbx/programs/barbed_wire_analysis.py usr/lib/python3.14/dist-packages/mmtbx/programs/cablam.py usr/lib/python3.14/dist-packages/mmtbx/programs/cablam_idealization.py usr/lib/python3.14/dist-packages/mmtbx/programs/cbetadev.py usr/lib/python3.14/dist-packages/mmtbx/programs/chiral_validation.py usr/lib/python3.14/dist-packages/mmtbx/programs/clashscore.py usr/lib/python3.14/dist-packages/mmtbx/programs/clashscore2.py usr/lib/python3.14/dist-packages/mmtbx/programs/comparama.py usr/lib/python3.14/dist-packages/mmtbx/programs/debug_riding.py usr/lib/python3.14/dist-packages/mmtbx/programs/elbow_services.py usr/lib/python3.14/dist-packages/mmtbx/programs/emringer.py usr/lib/python3.14/dist-packages/mmtbx/programs/fetch.py usr/lib/python3.14/dist-packages/mmtbx/programs/fmodel.py usr/lib/python3.14/dist-packages/mmtbx/programs/hbond.py usr/lib/python3.14/dist-packages/mmtbx/programs/holton_geometry_validation.py usr/lib/python3.14/dist-packages/mmtbx/programs/hydrogenate.py usr/lib/python3.14/dist-packages/mmtbx/programs/ligand_restraints_validation.py usr/lib/python3.14/dist-packages/mmtbx/programs/mask.py usr/lib/python3.14/dist-packages/mmtbx/programs/matthews.py usr/lib/python3.14/dist-packages/mmtbx/programs/model_vs_sequence.py usr/lib/python3.14/dist-packages/mmtbx/programs/mp_validate_bonds.py usr/lib/python3.14/dist-packages/mmtbx/programs/next_gen_atom_typing.py usr/lib/python3.14/dist-packages/mmtbx/programs/next_gen_residue_typing.py usr/lib/python3.14/dist-packages/mmtbx/programs/nonbonded_overlaps.py usr/lib/python3.14/dist-packages/mmtbx/programs/omegalyze.py usr/lib/python3.14/dist-packages/mmtbx/programs/pdb_as_cif.py usr/lib/python3.14/dist-packages/mmtbx/programs/pdbtools.py usr/lib/python3.14/dist-packages/mmtbx/programs/polder.py usr/lib/python3.14/dist-packages/mmtbx/programs/prepare_pdb_deposition.py usr/lib/python3.14/dist-packages/mmtbx/programs/probe2.py usr/lib/python3.14/dist-packages/mmtbx/programs/probescore_ligand.py usr/lib/python3.14/dist-packages/mmtbx/programs/process_predicted_model.py usr/lib/python3.14/dist-packages/mmtbx/programs/quantum_interface.py usr/lib/python3.14/dist-packages/mmtbx/programs/rama_z.py usr/lib/python3.14/dist-packages/mmtbx/programs/ramalyze.py usr/lib/python3.14/dist-packages/mmtbx/programs/real_space_correlation.py usr/lib/python3.14/dist-packages/mmtbx/programs/reduce2.py usr/lib/python3.14/dist-packages/mmtbx/programs/reduce_cryoem_resolution.py usr/lib/python3.14/dist-packages/mmtbx/programs/ribbons.py usr/lib/python3.14/dist-packages/mmtbx/programs/rna_validate.py usr/lib/python3.14/dist-packages/mmtbx/programs/rna_validate_bonds.py usr/lib/python3.14/dist-packages/mmtbx/programs/rna_validate_puckers.py usr/lib/python3.14/dist-packages/mmtbx/programs/rna_validate_suites.py usr/lib/python3.14/dist-packages/mmtbx/programs/rotalyze.py usr/lib/python3.14/dist-packages/mmtbx/programs/ss_idealization.py usr/lib/python3.14/dist-packages/mmtbx/programs/ss_validation.py usr/lib/python3.14/dist-packages/mmtbx/programs/suitename.py usr/lib/python3.14/dist-packages/mmtbx/programs/suitename_old.py usr/lib/python3.14/dist-packages/mmtbx/programs/taam_minus_iam.py usr/lib/python3.14/dist-packages/mmtbx/programs/undowser.py usr/lib/python3.14/dist-packages/mmtbx/programs/undowser2.py usr/lib/python3.14/dist-packages/mmtbx/programs/validate_ligands.py usr/lib/python3.14/dist-packages/mmtbx/programs/water_b_factors.py usr/lib/python3.14/dist-packages/mmtbx/programs/xtrapol8.py usr/lib/python3.14/dist-packages/mmtbx/real_space/ usr/lib/python3.14/dist-packages/mmtbx/real_space/__init__.py usr/lib/python3.14/dist-packages/mmtbx/real_space/tst.py usr/lib/python3.14/dist-packages/mmtbx/reduce/ usr/lib/python3.14/dist-packages/mmtbx/reduce/InteractionGraph.py usr/lib/python3.14/dist-packages/mmtbx/reduce/Movers.py usr/lib/python3.14/dist-packages/mmtbx/reduce/Optimizers.py usr/lib/python3.14/dist-packages/mmtbx/reduce/__init__.py usr/lib/python3.14/dist-packages/mmtbx/reduce/tst_mmtbx_reduce_ext.py usr/lib/python3.14/dist-packages/mmtbx/refinement/ usr/lib/python3.14/dist-packages/mmtbx/refinement/__init__.py usr/lib/python3.14/dist-packages/mmtbx/refinement/adp_refinement.py usr/lib/python3.14/dist-packages/mmtbx/refinement/anomalous_scatterer_groups.py usr/lib/python3.14/dist-packages/mmtbx/refinement/calculators.py usr/lib/python3.14/dist-packages/mmtbx/refinement/data.py usr/lib/python3.14/dist-packages/mmtbx/refinement/energy_monitor.py usr/lib/python3.14/dist-packages/mmtbx/refinement/flip_peptide_side_chain.py usr/lib/python3.14/dist-packages/mmtbx/refinement/geometry_minimization.py usr/lib/python3.14/dist-packages/mmtbx/refinement/group.py usr/lib/python3.14/dist-packages/mmtbx/refinement/inspect_tardy_trajectory.py usr/lib/python3.14/dist-packages/mmtbx/refinement/minimization.py usr/lib/python3.14/dist-packages/mmtbx/refinement/minimization_monitor.py usr/lib/python3.14/dist-packages/mmtbx/refinement/minimization_ncs_constraints.py usr/lib/python3.14/dist-packages/mmtbx/refinement/occupancies.py usr/lib/python3.14/dist-packages/mmtbx/refinement/orca.py usr/lib/python3.14/dist-packages/mmtbx/refinement/print_statistics.py usr/lib/python3.14/dist-packages/mmtbx/refinement/refinement_flags.py usr/lib/python3.14/dist-packages/mmtbx/refinement/restraints.py usr/lib/python3.14/dist-packages/mmtbx/refinement/rigid_body.py usr/lib/python3.14/dist-packages/mmtbx/refinement/select_best_starting_model.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tardy.py usr/lib/python3.14/dist-packages/mmtbx/refinement/targets.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_anomalous_scatterer_groups.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_fit_rotamers.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_group.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_group_2.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_misc.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_occupancy_selections.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_real_space_simple.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_refinement_flags.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_rigid_body.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py usr/lib/python3.14/dist-packages/mmtbx/refinement/tst_select_best_starting_model.py usr/lib/python3.14/dist-packages/mmtbx/refinement/utils.py usr/lib/python3.14/dist-packages/mmtbx/refinement/weights.py usr/lib/python3.14/dist-packages/mmtbx/refinement/weights_params.py usr/lib/python3.14/dist-packages/mmtbx/refinement/wrappers.py usr/lib/python3.14/dist-packages/mmtbx/refinement/ensemble_refinement/ usr/lib/python3.14/dist-packages/mmtbx/refinement/ensemble_refinement/__init__.py usr/lib/python3.14/dist-packages/mmtbx/refinement/ensemble_refinement/ensemble_probability.py usr/lib/python3.14/dist-packages/mmtbx/refinement/ensemble_refinement/ensemble_utils.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/ usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/__init__.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/adp.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/explode_and_refine.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/fit_his.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/fit_residue.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/fit_residues.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/fit_small_molecule.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/fit_water.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/individual_sites.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/occupancy.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/rigid_body.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_0.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_0H.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_1.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_1H.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_2.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_3.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_4.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_5.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_6.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_7.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_1.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_1H.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_2.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_3.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_4.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_5.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_6.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_selection.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_fit_water.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_1.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_2.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_3.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_monitor.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_rigid_body.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/tst_weight.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/utils.py usr/lib/python3.14/dist-packages/mmtbx/refinement/real_space/weight.py usr/lib/python3.14/dist-packages/mmtbx/regression/ usr/lib/python3.14/dist-packages/mmtbx/regression/__init__.py usr/lib/python3.14/dist-packages/mmtbx/regression/make_fake_anomalous_data.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_add_arrows_on_plot.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_add_h_to_water.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_adp_restraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_alignment.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_altloc_chain_break.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_altloc_remediate.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_angle.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_anomalous_substructure.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_apply_cif_restraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_arginine_geometry.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_cc_star.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_chain_comparison.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_chain_comparison_cif.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_cif_as_mtz_wavelengths.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_cis_trans_peptide_link.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_clashes.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_command_line_input.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_domains_from_pae.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_domains_from_pae_cif.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_dynamics_cli.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_examples.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_find_ncs.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_find_ss_structure.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_find_ss_structure_cif.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_flipping_his.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_fmodel.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_fmodel_2.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_fmodel_and_dm.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_fmodel_fd.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_fmodel_misc.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_fmodel_no_cryst1.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_geo_min_restraints_phil.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_geometry_minimization.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_holton_geometry_validation.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_isomorphous_difference_misc.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_ligand_interactions.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_ligand_ncs.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_loop_closure.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_lrv.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_map_model_cc.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_map_type_parser.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_maps_misc.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_metal_link_1.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_minimize_chain.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_ml_estimate.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_mmtbx_refinement_wrappers.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_model_map.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_model_vs_map.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_model_vs_sequence.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_models_to_from_chains.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_msa.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_mtz2map.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_multi_residue_class.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_ordered_solvent.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_origin_ids.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_pdbtools.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder_1.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder_2.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder_3.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder_4.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder_box.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_polder_ccs.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_probe.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_process_predicted_model.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_process_predicted_model_cif.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_prune_model.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_psi_phi_extraction.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_rank_scale_map.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_rdkit_utils_fragmentation.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_rdkit_utils_molecule.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_real_space_correlation.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_reduce.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_reduce2_no_symmetry.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_reduce_cryoem_resolution.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_reduce_custom_bond.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_reduce_switch.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_reduce_timeout.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_refine_anomalous_substructure.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_regularize_from_pdb.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_regularize_from_pdb_cif.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_ribbons.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_rigid_bond_test.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_ringer.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_sampled_model_density.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_scattering_table.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_scattering_type_registry.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_schrodinger_interface.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_sequence_validation.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_sort_hetatms.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_special_term_at_end.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_ss_validation_long_chainids.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_statistics_output.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_superpose.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_table_one.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_utils.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_validate_ligands.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_validate_ligands_2.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_validate_ligands_3.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_validate_ligands_4.py usr/lib/python3.14/dist-packages/mmtbx/regression/tst_validation_summary.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/ usr/lib/python3.14/dist-packages/mmtbx/regression/model/__init__.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_2.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_biomt_mtrix.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_biomt_mtrix_2.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_cart_ref_restraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_dedeuterate.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_get_vdw_radii.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_merge.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_mtrix.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_ncs.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_neutralize_scatterers.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_pairs_within.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_ramachandran.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_remove_alternative_conformations.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_symmetry.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_tors_ref_restraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_model_utils_merge_models.py usr/lib/python3.14/dist-packages/mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/ usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/__init__.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_ncs_restraints_group_list.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_ncs_search.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_ncs_search_flips.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_ncs_utils.py usr/lib/python3.14/dist-packages/mmtbx/regression/ncs/tst_restraints.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/ usr/lib/python3.14/dist-packages/mmtbx/regression/tls/__init__.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_get_t_scheme.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_tls.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_tls_analysis.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_tls_as_xyz.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_tls_optimise_amplitudes.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_tls_refinement_fft.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_tls_utils.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py usr/lib/python3.14/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py usr/lib/python3.14/dist-packages/mmtbx/ringer/ usr/lib/python3.14/dist-packages/mmtbx/ringer/__init__.py usr/lib/python3.14/dist-packages/mmtbx/ringer/em_rolling.py usr/lib/python3.14/dist-packages/mmtbx/ringer/em_rscc.py usr/lib/python3.14/dist-packages/mmtbx/ringer/em_scoring.py usr/lib/python3.14/dist-packages/mmtbx/ringer/emringer.py usr/lib/python3.14/dist-packages/mmtbx/ringer/tst_em_rscc.py usr/lib/python3.14/dist-packages/mmtbx/ringer/tst_emringer.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/ usr/lib/python3.14/dist-packages/mmtbx/rotamer/__init__.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/graphics.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/n_dim_table.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/nqh.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/ramachandran_eval.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/ramachandran_eval_deprecated.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/rotamer_eval.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/sidechain_angles.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py usr/lib/python3.14/dist-packages/mmtbx/rotamer/tst_rotamer_eval.py usr/lib/python3.14/dist-packages/mmtbx/rsr/ usr/lib/python3.14/dist-packages/mmtbx/rsr/__init__.py usr/lib/python3.14/dist-packages/mmtbx/rsr/tst.py usr/lib/python3.14/dist-packages/mmtbx/scaling/ usr/lib/python3.14/dist-packages/mmtbx/scaling/__init__.py usr/lib/python3.14/dist-packages/mmtbx/scaling/absence_likelihood.py usr/lib/python3.14/dist-packages/mmtbx/scaling/absences.py usr/lib/python3.14/dist-packages/mmtbx/scaling/absolute_scaling.py usr/lib/python3.14/dist-packages/mmtbx/scaling/basic_analyses.py usr/lib/python3.14/dist-packages/mmtbx/scaling/bayesian_estimator.py usr/lib/python3.14/dist-packages/mmtbx/scaling/data_statistics.py usr/lib/python3.14/dist-packages/mmtbx/scaling/fa_estimation.py usr/lib/python3.14/dist-packages/mmtbx/scaling/make_param.py usr/lib/python3.14/dist-packages/mmtbx/scaling/massage_twin_detwin_data.py usr/lib/python3.14/dist-packages/mmtbx/scaling/matthews.py usr/lib/python3.14/dist-packages/mmtbx/scaling/mean_f_rms_f.py usr/lib/python3.14/dist-packages/mmtbx/scaling/outlier_plots.py usr/lib/python3.14/dist-packages/mmtbx/scaling/outlier_rejection.py usr/lib/python3.14/dist-packages/mmtbx/scaling/pair_analyses.py usr/lib/python3.14/dist-packages/mmtbx/scaling/plan_sad_experiment.py usr/lib/python3.14/dist-packages/mmtbx/scaling/pre_scale.py usr/lib/python3.14/dist-packages/mmtbx/scaling/random_omit.py usr/lib/python3.14/dist-packages/mmtbx/scaling/relative_scaling.py usr/lib/python3.14/dist-packages/mmtbx/scaling/relative_wilson.py usr/lib/python3.14/dist-packages/mmtbx/scaling/remove_outliers.py usr/lib/python3.14/dist-packages/mmtbx/scaling/sigmaa_estimation.py usr/lib/python3.14/dist-packages/mmtbx/scaling/ta_alpha_beta_calc.py usr/lib/python3.14/dist-packages/mmtbx/scaling/thorough_outlier_test.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_absences.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_bayesian_estimator.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_massage_data.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_mean_f_rms_f.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_outlier.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_plan_sad_experiment.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_scaling.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_sigmaa.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_xtriage.py usr/lib/python3.14/dist-packages/mmtbx/scaling/tst_xtriage_twin_analyses.py usr/lib/python3.14/dist-packages/mmtbx/scaling/twin_analyses.py usr/lib/python3.14/dist-packages/mmtbx/scaling/twmad_scale.py usr/lib/python3.14/dist-packages/mmtbx/scaling/xtriage.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/ usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/__init__.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/find_ss_from_ca.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/nucleic_acids.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/proteins.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/regularize_from_pdb.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/secondary_structure_params.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/ss_validation.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/tst.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/tst_insertion_codes.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/tst_segid.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/utils.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/ usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/__init__.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/ss_idealization.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/tst_1.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/tst_2.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/tst_3.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/tst_io.py usr/lib/python3.14/dist-packages/mmtbx/secondary_structure/build/tst_ss_id_ncs.py usr/lib/python3.14/dist-packages/mmtbx/sisa/ usr/lib/python3.14/dist-packages/mmtbx/sisa/__init__.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/ usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/__init__.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/mod_ga.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/mod_input.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/mod_masks.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/mod_mtz.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/mod_optimize.py usr/lib/python3.14/dist-packages/mmtbx/sisa/optimize/mod_util.py usr/lib/python3.14/dist-packages/mmtbx/solvent/ usr/lib/python3.14/dist-packages/mmtbx/solvent/__init__.py usr/lib/python3.14/dist-packages/mmtbx/solvent/ensemble_ordered_solvent.py usr/lib/python3.14/dist-packages/mmtbx/solvent/map_to_water.py usr/lib/python3.14/dist-packages/mmtbx/solvent/ordered_solvent.py usr/lib/python3.14/dist-packages/mmtbx/suitename/ usr/lib/python3.14/dist-packages/mmtbx/suitename/__init__.py usr/lib/python3.14/dist-packages/mmtbx/suitename/diangle.py usr/lib/python3.14/dist-packages/mmtbx/suitename/dualparse.py usr/lib/python3.14/dist-packages/mmtbx/suitename/mainchain.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suitealyze.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suitename.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suitenamedefs.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suiteninit.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suiteninput.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suitenout.py usr/lib/python3.14/dist-packages/mmtbx/suitename/suites.py usr/lib/python3.14/dist-packages/mmtbx/suitename/transdent.py usr/lib/python3.14/dist-packages/mmtbx/tls/ usr/lib/python3.14/dist-packages/mmtbx/tls/__init__.py usr/lib/python3.14/dist-packages/mmtbx/tls/analysis.py usr/lib/python3.14/dist-packages/mmtbx/tls/command_line.py usr/lib/python3.14/dist-packages/mmtbx/tls/decompose.py usr/lib/python3.14/dist-packages/mmtbx/tls/ladp.py usr/lib/python3.14/dist-packages/mmtbx/tls/optimise_amplitudes.py usr/lib/python3.14/dist-packages/mmtbx/tls/perm10.py usr/lib/python3.14/dist-packages/mmtbx/tls/perm11.py usr/lib/python3.14/dist-packages/mmtbx/tls/perm12.py usr/lib/python3.14/dist-packages/mmtbx/tls/perm13.py usr/lib/python3.14/dist-packages/mmtbx/tls/perm14.py usr/lib/python3.14/dist-packages/mmtbx/tls/perm15.py usr/lib/python3.14/dist-packages/mmtbx/tls/tls_as_xyz.py usr/lib/python3.14/dist-packages/mmtbx/tls/tools.py usr/lib/python3.14/dist-packages/mmtbx/tls/utils.py usr/lib/python3.14/dist-packages/mmtbx/twinning/ usr/lib/python3.14/dist-packages/mmtbx/twinning/__init__.py usr/lib/python3.14/dist-packages/mmtbx/twinning/probabalistic_detwinning.py usr/lib/python3.14/dist-packages/mmtbx/twinning/twin_f_model.py usr/lib/python3.14/dist-packages/mmtbx/utils/ usr/lib/python3.14/dist-packages/mmtbx/utils/__init__.py usr/lib/python3.14/dist-packages/mmtbx/utils/fab_elbow_angle.py usr/lib/python3.14/dist-packages/mmtbx/utils/grid2d.py usr/lib/python3.14/dist-packages/mmtbx/utils/ntc.py usr/lib/python3.14/dist-packages/mmtbx/utils/rotatable_bonds.py usr/lib/python3.14/dist-packages/mmtbx/utils/tst_switch_rotamers.py usr/lib/python3.14/dist-packages/mmtbx/validation/ usr/lib/python3.14/dist-packages/mmtbx/validation/__init__.py usr/lib/python3.14/dist-packages/mmtbx/validation/analyze_peptides.py usr/lib/python3.14/dist-packages/mmtbx/validation/barbed_wire_analysis.py usr/lib/python3.14/dist-packages/mmtbx/validation/cablam.py usr/lib/python3.14/dist-packages/mmtbx/validation/cbd_utils.py usr/lib/python3.14/dist-packages/mmtbx/validation/cbetadev.py usr/lib/python3.14/dist-packages/mmtbx/validation/chain_comparison.py usr/lib/python3.14/dist-packages/mmtbx/validation/clashscore.py usr/lib/python3.14/dist-packages/mmtbx/validation/clashscore2.py usr/lib/python3.14/dist-packages/mmtbx/validation/comparama.py usr/lib/python3.14/dist-packages/mmtbx/validation/comprehensive_residue.py usr/lib/python3.14/dist-packages/mmtbx/validation/convert_lists.py usr/lib/python3.14/dist-packages/mmtbx/validation/datasets.py usr/lib/python3.14/dist-packages/mmtbx/validation/ensembles.py usr/lib/python3.14/dist-packages/mmtbx/validation/experimental.py usr/lib/python3.14/dist-packages/mmtbx/validation/fav_lists.py usr/lib/python3.14/dist-packages/mmtbx/validation/graphics.py usr/lib/python3.14/dist-packages/mmtbx/validation/holton_geometry_validation.py usr/lib/python3.14/dist-packages/mmtbx/validation/ligand_interactions.py usr/lib/python3.14/dist-packages/mmtbx/validation/ligands.py usr/lib/python3.14/dist-packages/mmtbx/validation/mean_devs_PRO_phi_psi.py usr/lib/python3.14/dist-packages/mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py usr/lib/python3.14/dist-packages/mmtbx/validation/mean_devs_others_phi_psi.py usr/lib/python3.14/dist-packages/mmtbx/validation/model_properties.py usr/lib/python3.14/dist-packages/mmtbx/validation/mp_validate_bonds.py usr/lib/python3.14/dist-packages/mmtbx/validation/omegalyze.py usr/lib/python3.14/dist-packages/mmtbx/validation/phi_psi_2_data.py usr/lib/python3.14/dist-packages/mmtbx/validation/rama_z.py usr/lib/python3.14/dist-packages/mmtbx/validation/ramalyze.py usr/lib/python3.14/dist-packages/mmtbx/validation/restraints.py usr/lib/python3.14/dist-packages/mmtbx/validation/rna_validate.py usr/lib/python3.14/dist-packages/mmtbx/validation/rotalyze.py usr/lib/python3.14/dist-packages/mmtbx/validation/sequence.py usr/lib/python3.14/dist-packages/mmtbx/validation/undowser.py usr/lib/python3.14/dist-packages/mmtbx/validation/undowser2.py usr/lib/python3.14/dist-packages/mmtbx/validation/utils.py usr/lib/python3.14/dist-packages/mmtbx/validation/validate_ligands.py usr/lib/python3.14/dist-packages/mmtbx/validation/waters.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/ usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/__init__.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/kinemage_templates.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/mp_geo.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/percentile_clashscore.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/percentile_mpscore.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/probescore_ligand.py usr/lib/python3.14/dist-packages/mmtbx/validation/molprobity/table_from_json.py usr/lib/python3.14/dist-packages/mmtbx/validation/ramachandran/ usr/lib/python3.14/dist-packages/mmtbx/validation/ramachandran/__init__.py usr/lib/python3.14/dist-packages/mmtbx/validation/ramachandran/convert_from_text.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/ usr/lib/python3.14/dist-packages/mmtbx/validation/regression/__init__.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/run_restraints.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_barbed_wire_analysis.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_cablam.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_cablam_2.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_cbetadev.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_cbetadev_02.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_chiral_validation.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_clashscore.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_clashscore_2.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_do_flips_clashscore.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_experimental.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_find_region_max_value.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_keep_hydrogens.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_model_properties.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_molprobity_1.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_molprobity_2.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_molprobity_3.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_molprobity_4.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_molprobity_5.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_molprobity_arguments.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_mp_geo.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_mp_geo_endtoend.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_mp_validate_bonds.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_omegalyze.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_probe2_asu_bond_proxies.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_rama_z_01.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_rama_z_02.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_ramalyze.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_ramalyze2.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_ramalyze_rare.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_restraints.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_rna_validate.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_rotalyze.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_suitename.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_symmetry_SS.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_undowser.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_undowser2.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_utils.py usr/lib/python3.14/dist-packages/mmtbx/validation/regression/tst_waters.py usr/lib/python3.14/dist-packages/mmtbx/wwpdb/ usr/lib/python3.14/dist-packages/mmtbx/wwpdb/__init__.py usr/lib/python3.14/dist-packages/mmtbx/wwpdb/rcsb_entry_request.py usr/lib/python3.14/dist-packages/mmtbx/wwpdb/rcsb_web_services.py usr/lib/python3.14/dist-packages/mmtbx/wwpdb/tst_rcsb_entry_request.py usr/lib/python3.14/dist-packages/mmtbx/wwpdb/tst_rcsb_web_services.py usr/lib/python3.14/dist-packages/omptbx/ usr/lib/python3.14/dist-packages/omptbx/__init__.py usr/lib/python3.14/dist-packages/omptbx/tst.py usr/lib/python3.14/dist-packages/qttbx/ usr/lib/python3.14/dist-packages/qttbx/__init__.py usr/lib/python3.14/dist-packages/qttbx/phil.py usr/lib/python3.14/dist-packages/qttbx/qt.py usr/lib/python3.14/dist-packages/qttbx/run_tests.py usr/lib/python3.14/dist-packages/qttbx/examples/ usr/lib/python3.14/dist-packages/qttbx/examples/__init__.py usr/lib/python3.14/dist-packages/qttbx/examples/_helpers.py usr/lib/python3.14/dist-packages/qttbx/examples/data_manager_example.py usr/lib/python3.14/dist-packages/qttbx/examples/phil_widgets_example.py usr/lib/python3.14/dist-packages/qttbx/regression/ usr/lib/python3.14/dist-packages/qttbx/regression/__init__.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_agent_core.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_approval_coordinator.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_artifact_panel.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_auto_height.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_conversation_widgets.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_credentials_dialog.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_diagnostics.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_eliding.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_image.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_logging_setup.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_markdown.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_mcp_client.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_message_bubble.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_message_input.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_overlay_anchor.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_profile.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_question_card.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_runner.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_search.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_session.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_skills.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_storage.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_storage_session.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_subagent.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_subagent_view.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_tool_approval.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_tools.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_chat_window_chrome.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_data_manager_widget.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_phil_widgets.py usr/lib/python3.14/dist-packages/qttbx/regression/tst_run_tests_manifest.py usr/lib/python3.14/dist-packages/qttbx/viewers/ usr/lib/python3.14/dist-packages/qttbx/viewers/__init__.py usr/lib/python3.14/dist-packages/qttbx/viewers/chimerax.py usr/lib/python3.14/dist-packages/qttbx/widgets/ usr/lib/python3.14/dist-packages/qttbx/widgets/__init__.py usr/lib/python3.14/dist-packages/qttbx/widgets/font_init.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/ usr/lib/python3.14/dist-packages/qttbx/widgets/chat/__init__.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/artifact.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/artifact_panel.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/auto_height.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/chat_top_bar.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/conversation_list.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/conversation_search.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/conversation_view.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/credentials_dialog.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/diagnostics.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/edge_rail.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/eliding.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/image_cache.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/image_lightbox.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/logging_setup.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/markdown_export.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/markdown_view.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/message_bubble.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/message_input.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/overlay_anchor.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/question_card.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/search_bar.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/tool_approval.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/tool_call_disclosure.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/ usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/__init__.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/approval.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/base.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/conversation.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/errors.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/events.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/mcp_client.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/paths.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/profile.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/runner.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/session.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/skills.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/storage.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/subagent.py usr/lib/python3.14/dist-packages/qttbx/widgets/chat/agent/tools.py usr/lib/python3.14/dist-packages/qttbx/widgets/data_manager/ usr/lib/python3.14/dist-packages/qttbx/widgets/data_manager/__init__.py usr/lib/python3.14/dist-packages/qttbx/widgets/data_manager/_binding_popup.py usr/lib/python3.14/dist-packages/qttbx/widgets/data_manager/_delegate.py usr/lib/python3.14/dist-packages/qttbx/widgets/data_manager/_phil_helpers.py usr/lib/python3.14/dist-packages/qttbx/widgets/data_manager/_table_model.py usr/lib/python3.14/dist-packages/qttbx/widgets/data_manager/widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/ usr/lib/python3.14/dist-packages/qttbx/widgets/phil/__init__.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/_colors.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/atom_selection.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/bool_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/choice_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/delegate.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/float_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/floats_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/int_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/ints_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/key_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/multiple.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/path_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/qstr_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/space_group.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/str_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/strings_widget.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/text_base.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/unit_cell.py usr/lib/python3.14/dist-packages/qttbx/widgets/phil/words_widget.py usr/lib/python3.14/dist-packages/rstbx/ usr/lib/python3.14/dist-packages/rstbx/__init__.py usr/lib/python3.14/dist-packages/rstbx/run_tests.py usr/lib/python3.14/dist-packages/rstbx/utils.py usr/lib/python3.14/dist-packages/rstbx/apps/ usr/lib/python3.14/dist-packages/rstbx/apps/__init__.py usr/lib/python3.14/dist-packages/rstbx/apps/dual_resolution_helpers.py usr/lib/python3.14/dist-packages/rstbx/apps/slip_helpers.py usr/lib/python3.14/dist-packages/rstbx/apps/spot_markup.py usr/lib/python3.14/dist-packages/rstbx/apps/stills/ usr/lib/python3.14/dist-packages/rstbx/apps/stills/__init__.py usr/lib/python3.14/dist-packages/rstbx/apps/stills/deltapsi_refinement_preceding_integration.py usr/lib/python3.14/dist-packages/rstbx/apps/stills/dials_refinement_preceding_integration.py usr/lib/python3.14/dist-packages/rstbx/apps/stills/simple_integration.py usr/lib/python3.14/dist-packages/rstbx/apps/stills/stills_integration.py usr/lib/python3.14/dist-packages/rstbx/apps/stills/util.py usr/lib/python3.14/dist-packages/rstbx/array_family/ usr/lib/python3.14/dist-packages/rstbx/array_family/__init__.py usr/lib/python3.14/dist-packages/rstbx/array_family/flex.py usr/lib/python3.14/dist-packages/rstbx/bandpass/ usr/lib/python3.14/dist-packages/rstbx/bandpass/__init__.py usr/lib/python3.14/dist-packages/rstbx/bandpass/simulated_annealing.py usr/lib/python3.14/dist-packages/rstbx/bpcx/ usr/lib/python3.14/dist-packages/rstbx/bpcx/__init__.py usr/lib/python3.14/dist-packages/rstbx/bpcx/compare_mosflm_xds.py usr/lib/python3.14/dist-packages/rstbx/bpcx/ersatz_misset.py usr/lib/python3.14/dist-packages/rstbx/bpcx/uc1_2.py usr/lib/python3.14/dist-packages/rstbx/bpcx/uc1_2_positions.py usr/lib/python3.14/dist-packages/rstbx/bpcx/uc1_2_positions_idx.py usr/lib/python3.14/dist-packages/rstbx/bpcx/uc1_2_validate.py usr/lib/python3.14/dist-packages/rstbx/bpcx/uc1_2a.py usr/lib/python3.14/dist-packages/rstbx/bpcx/detector_model/ usr/lib/python3.14/dist-packages/rstbx/bpcx/detector_model/__init__.py usr/lib/python3.14/dist-packages/rstbx/bpcx/detector_model/detector.py usr/lib/python3.14/dist-packages/rstbx/bpcx/detector_model/instrument_specifics.py usr/lib/python3.14/dist-packages/rstbx/bpcx/detector_model/tst_detector_model.py usr/lib/python3.14/dist-packages/rstbx/cftbx/ usr/lib/python3.14/dist-packages/rstbx/cftbx/__init__.py usr/lib/python3.14/dist-packages/rstbx/cftbx/coordinate_frame_converter.py usr/lib/python3.14/dist-packages/rstbx/cftbx/coordinate_frame_helpers.py usr/lib/python3.14/dist-packages/rstbx/cftbx/tst_coordinate_frame_converter.py usr/lib/python3.14/dist-packages/rstbx/command_line/ usr/lib/python3.14/dist-packages/rstbx/command_line/__init__.py usr/lib/python3.14/dist-packages/rstbx/command_line/example_viewer.py usr/lib/python3.14/dist-packages/rstbx/command_line/index.py usr/lib/python3.14/dist-packages/rstbx/command_line/simage.create.py usr/lib/python3.14/dist-packages/rstbx/command_line/simage.explore_completeness.py usr/lib/python3.14/dist-packages/rstbx/command_line/simage.solver.py usr/lib/python3.14/dist-packages/rstbx/command_line/simage.wx_display.py usr/lib/python3.14/dist-packages/rstbx/command_line/slip_viewer.py usr/lib/python3.14/dist-packages/rstbx/command_line/viewer.py usr/lib/python3.14/dist-packages/rstbx/detectors/ usr/lib/python3.14/dist-packages/rstbx/detectors/__init__.py usr/lib/python3.14/dist-packages/rstbx/detectors/silicon.py usr/lib/python3.14/dist-packages/rstbx/dials_core/ usr/lib/python3.14/dist-packages/rstbx/dials_core/__init__.py usr/lib/python3.14/dist-packages/rstbx/dials_core/integration_core.py usr/lib/python3.14/dist-packages/rstbx/diffraction/ usr/lib/python3.14/dist-packages/rstbx/diffraction/__init__.py usr/lib/python3.14/dist-packages/rstbx/diffraction/tst_ewald_sphere.py usr/lib/python3.14/dist-packages/rstbx/diffraction/tst_partial_derivatives.py usr/lib/python3.14/dist-packages/rstbx/diffraction/tst_predict.py usr/lib/python3.14/dist-packages/rstbx/diffraction/fastbragg/ usr/lib/python3.14/dist-packages/rstbx/diffraction/fastbragg/__init__.py usr/lib/python3.14/dist-packages/rstbx/diffraction/fastbragg/tst_bragg_minimal.py usr/lib/python3.14/dist-packages/rstbx/diffraction/fastbragg/tst_utils_clustering.py usr/lib/python3.14/dist-packages/rstbx/dps_core/ usr/lib/python3.14/dist-packages/rstbx/dps_core/__init__.py usr/lib/python3.14/dist-packages/rstbx/dps_core/basis_choice.py usr/lib/python3.14/dist-packages/rstbx/dps_core/cell_assessment.py usr/lib/python3.14/dist-packages/rstbx/dps_core/constrainment.py usr/lib/python3.14/dist-packages/rstbx/dps_core/lepage.py usr/lib/python3.14/dist-packages/rstbx/dps_core/sampling.py usr/lib/python3.14/dist-packages/rstbx/dps_core/tst_iotbx_converter.py usr/lib/python3.14/dist-packages/rstbx/dps_core/zuoreduction.py usr/lib/python3.14/dist-packages/rstbx/indexing/ usr/lib/python3.14/dist-packages/rstbx/indexing/__init__.py usr/lib/python3.14/dist-packages/rstbx/indexing/do_index.py usr/lib/python3.14/dist-packages/rstbx/indexing/tst_auto_monoscan.py usr/lib/python3.14/dist-packages/rstbx/indexing/tst_dataset1.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/ usr/lib/python3.14/dist-packages/rstbx/indexing_api/__init__.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/basis_choice.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/force_cell.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/lattice.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/nearest_neighbor.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/outlier_detection.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/outlier_procedure.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/sampling.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/test_dps.py usr/lib/python3.14/dist-packages/rstbx/indexing_api/tools.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/ usr/lib/python3.14/dist-packages/rstbx/new_horizons/__init__.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/index.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/oscillation_shots.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/pixel_spread.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/speckfinder.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/spot_shape.py usr/lib/python3.14/dist-packages/rstbx/new_horizons/stats_index.py usr/lib/python3.14/dist-packages/rstbx/outlier_spots/ usr/lib/python3.14/dist-packages/rstbx/outlier_spots/__init__.py usr/lib/python3.14/dist-packages/rstbx/outlier_spots/fit_distribution.py usr/lib/python3.14/dist-packages/rstbx/phil/ usr/lib/python3.14/dist-packages/rstbx/phil/__init__.py usr/lib/python3.14/dist-packages/rstbx/phil/phil_preferences.py usr/lib/python3.14/dist-packages/rstbx/phil/preferences.py usr/lib/python3.14/dist-packages/rstbx/phil/scope.py usr/lib/python3.14/dist-packages/rstbx/simage/ usr/lib/python3.14/dist-packages/rstbx/simage/__init__.py usr/lib/python3.14/dist-packages/rstbx/simage/create.py usr/lib/python3.14/dist-packages/rstbx/simage/explore_completeness.py usr/lib/python3.14/dist-packages/rstbx/simage/integrate_crude.py usr/lib/python3.14/dist-packages/rstbx/simage/refine_uc_cr.py usr/lib/python3.14/dist-packages/rstbx/simage/run_labelit_index.py usr/lib/python3.14/dist-packages/rstbx/simage/run_spotfinder.py usr/lib/python3.14/dist-packages/rstbx/simage/solver.py usr/lib/python3.14/dist-packages/rstbx/simage/tst.py usr/lib/python3.14/dist-packages/rstbx/simage/wx_display.py usr/lib/python3.14/dist-packages/rstbx/simulation/ usr/lib/python3.14/dist-packages/rstbx/simulation/__init__.py usr/lib/python3.14/dist-packages/rstbx/simulation/constants.py usr/lib/python3.14/dist-packages/rstbx/simulation/sim_pdf.py usr/lib/python3.14/dist-packages/rstbx/simulation/sim_utils.py usr/lib/python3.14/dist-packages/rstbx/simulation/tst_xfel1_simple.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/ usr/lib/python3.14/dist-packages/rstbx/slip_viewer/__init__.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/calibration_frame.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/example_frame_plugin_hidden.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/frame.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/pyslip.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/ring_frame.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/score_frame.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/slip_display.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/slip_viewer_image_factory.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/tile_generation.py usr/lib/python3.14/dist-packages/rstbx/slip_viewer/uc_frame.py usr/lib/python3.14/dist-packages/rstbx/sublattice_support/ usr/lib/python3.14/dist-packages/rstbx/sublattice_support/__init__.py usr/lib/python3.14/dist-packages/rstbx/sublattice_support/change_basis.py usr/lib/python3.14/dist-packages/rstbx/sublattice_support/tst_sublattice.py usr/lib/python3.14/dist-packages/rstbx/symmetry/ usr/lib/python3.14/dist-packages/rstbx/symmetry/__init__.py usr/lib/python3.14/dist-packages/rstbx/symmetry/sgtbx_adaptor.py usr/lib/python3.14/dist-packages/rstbx/symmetry/subgroup.py usr/lib/python3.14/dist-packages/rstbx/symmetry/constraints/ usr/lib/python3.14/dist-packages/rstbx/symmetry/constraints/__init__.py usr/lib/python3.14/dist-packages/rstbx/symmetry/constraints/g_gradients.py usr/lib/python3.14/dist-packages/rstbx/symmetry/constraints/parameter_reduction.py usr/lib/python3.14/dist-packages/rstbx/viewer/ usr/lib/python3.14/dist-packages/rstbx/viewer/__init__.py usr/lib/python3.14/dist-packages/rstbx/viewer/calibration.py usr/lib/python3.14/dist-packages/rstbx/viewer/calibration_frame.py usr/lib/python3.14/dist-packages/rstbx/viewer/controls.py usr/lib/python3.14/dist-packages/rstbx/viewer/dataset.py usr/lib/python3.14/dist-packages/rstbx/viewer/display.py usr/lib/python3.14/dist-packages/rstbx/viewer/drivers.py usr/lib/python3.14/dist-packages/rstbx/viewer/frame.py usr/lib/python3.14/dist-packages/rstbx/viewer/indexing.py usr/lib/python3.14/dist-packages/rstbx/viewer/integration.py usr/lib/python3.14/dist-packages/rstbx/viewer/pixels3d.py usr/lib/python3.14/dist-packages/rstbx/viewer/processing.py usr/lib/python3.14/dist-packages/rstbx/viewer/results_base.py usr/lib/python3.14/dist-packages/rstbx/viewer/spotfinder_frame.py usr/lib/python3.14/dist-packages/rstbx/viewer/spotfinder_wrap.py usr/lib/python3.14/dist-packages/rstbx/viewer/tst.py usr/lib/python3.14/dist-packages/scitbx/ usr/lib/python3.14/dist-packages/scitbx/__init__.py usr/lib/python3.14/dist-packages/scitbx/cross_entropy.py usr/lib/python3.14/dist-packages/scitbx/cubicle_neighbors.py usr/lib/python3.14/dist-packages/scitbx/differential_evolution.py usr/lib/python3.14/dist-packages/scitbx/direct_search_simulated_annealing.py usr/lib/python3.14/dist-packages/scitbx/fftpack.py usr/lib/python3.14/dist-packages/scitbx/genetic_algorithm_with_mp.py usr/lib/python3.14/dist-packages/scitbx/golden_section_search.py usr/lib/python3.14/dist-packages/scitbx/lbfgsb.py usr/lib/python3.14/dist-packages/scitbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/scitbx/minimizers.py usr/lib/python3.14/dist-packages/scitbx/minpack.py usr/lib/python3.14/dist-packages/scitbx/r3_utils.py usr/lib/python3.14/dist-packages/scitbx/regular_grid_on_unit_sphere.py usr/lib/python3.14/dist-packages/scitbx/restraints.py usr/lib/python3.14/dist-packages/scitbx/run_tests.py usr/lib/python3.14/dist-packages/scitbx/simplex.py usr/lib/python3.14/dist-packages/scitbx/smoothing.py usr/lib/python3.14/dist-packages/scitbx/array_family/ usr/lib/python3.14/dist-packages/scitbx/array_family/__init__.py usr/lib/python3.14/dist-packages/scitbx/array_family/flex.py usr/lib/python3.14/dist-packages/scitbx/array_family/shared.py usr/lib/python3.14/dist-packages/scitbx/array_family/accessors/ usr/lib/python3.14/dist-packages/scitbx/array_family/accessors/__init__.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/ usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/regression_test.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_flex.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_flex_argument_passing.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_numpy_bridge.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_numpy_scalar_conversions.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_shared.py usr/lib/python3.14/dist-packages/scitbx/array_family/boost_python/tst_smart_selection.py usr/lib/python3.14/dist-packages/scitbx/array_family/detail/ usr/lib/python3.14/dist-packages/scitbx/array_family/detail/__init__.py usr/lib/python3.14/dist-packages/scitbx/boost_python/ usr/lib/python3.14/dist-packages/scitbx/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/command_line/ usr/lib/python3.14/dist-packages/scitbx/command_line/__init__.py usr/lib/python3.14/dist-packages/scitbx/command_line/apply_tapenade_hints.py usr/lib/python3.14/dist-packages/scitbx/command_line/generate_error_h.py usr/lib/python3.14/dist-packages/scitbx/command_line/histogram.py usr/lib/python3.14/dist-packages/scitbx/command_line/show_exp_times.py usr/lib/python3.14/dist-packages/scitbx/command_line/show_sizes.py usr/lib/python3.14/dist-packages/scitbx/command_line/unicode_examples.py usr/lib/python3.14/dist-packages/scitbx/dtmin/ usr/lib/python3.14/dist-packages/scitbx/dtmin/__init__.py usr/lib/python3.14/dist-packages/scitbx/dtmin/auxiliary.py usr/lib/python3.14/dist-packages/scitbx/dtmin/bounds.py usr/lib/python3.14/dist-packages/scitbx/dtmin/compulsory.py usr/lib/python3.14/dist-packages/scitbx/dtmin/min_logging.py usr/lib/python3.14/dist-packages/scitbx/dtmin/minimizer.py usr/lib/python3.14/dist-packages/scitbx/dtmin/optional.py usr/lib/python3.14/dist-packages/scitbx/dtmin/realsymmetricpseudoinverse.py usr/lib/python3.14/dist-packages/scitbx/dtmin/refinebase.py usr/lib/python3.14/dist-packages/scitbx/dtmin/reparams.py usr/lib/python3.14/dist-packages/scitbx/dtmin/twisted_gaussian.py usr/lib/python3.14/dist-packages/scitbx/dtmin/regression/ usr/lib/python3.14/dist-packages/scitbx/dtmin/regression/__init__.py usr/lib/python3.14/dist-packages/scitbx/dtmin/regression/tst_dtmin_basic.py usr/lib/python3.14/dist-packages/scitbx/dtmin/regression/tst_dtmin_booth.py usr/lib/python3.14/dist-packages/scitbx/dtmin/regression/tst_dtmin_twisted.py usr/lib/python3.14/dist-packages/scitbx/error/ usr/lib/python3.14/dist-packages/scitbx/error/__init__.py usr/lib/python3.14/dist-packages/scitbx/error/tst_error.py usr/lib/python3.14/dist-packages/scitbx/examples/ usr/lib/python3.14/dist-packages/scitbx/examples/__init__.py usr/lib/python3.14/dist-packages/scitbx/examples/bootstrap.py usr/lib/python3.14/dist-packages/scitbx/examples/chebyshev_lsq_example.py usr/lib/python3.14/dist-packages/scitbx/examples/flex_array_loops.py usr/lib/python3.14/dist-packages/scitbx/examples/flex_grid.py usr/lib/python3.14/dist-packages/scitbx/examples/functions.py usr/lib/python3.14/dist-packages/scitbx/examples/immoptibox_ports.py usr/lib/python3.14/dist-packages/scitbx/examples/integrating_a_weighted_sinc_function.py usr/lib/python3.14/dist-packages/scitbx/examples/lbfgs_linear_least_squares_fit.py usr/lib/python3.14/dist-packages/scitbx/examples/lbfgs_recipe.py usr/lib/python3.14/dist-packages/scitbx/examples/minimizer_comparisons.py usr/lib/python3.14/dist-packages/scitbx/examples/principal_axes_of_inertia.py usr/lib/python3.14/dist-packages/scitbx/examples/rigid_body_refinement_core.py usr/lib/python3.14/dist-packages/scitbx/examples/bevington/ usr/lib/python3.14/dist-packages/scitbx/examples/bevington/__init__.py usr/lib/python3.14/dist-packages/scitbx/examples/bevington/silver.py usr/lib/python3.14/dist-packages/scitbx/glmtbx/ usr/lib/python3.14/dist-packages/scitbx/glmtbx/__init__.py usr/lib/python3.14/dist-packages/scitbx/glmtbx/boost_python/ usr/lib/python3.14/dist-packages/scitbx/glmtbx/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/glmtbx/tests/ usr/lib/python3.14/dist-packages/scitbx/glmtbx/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/glmtbx/tests/tst.py usr/lib/python3.14/dist-packages/scitbx/graph/ usr/lib/python3.14/dist-packages/scitbx/graph/__init__.py usr/lib/python3.14/dist-packages/scitbx/graph/rigidity.py usr/lib/python3.14/dist-packages/scitbx/graph/rigidity_matrix_symbolic.py usr/lib/python3.14/dist-packages/scitbx/graph/tardy_tree.py usr/lib/python3.14/dist-packages/scitbx/graph/test_cases_tardy_pdb.py usr/lib/python3.14/dist-packages/scitbx/graph/tst_rigidity.py usr/lib/python3.14/dist-packages/scitbx/graph/tst_tardy_tree.py usr/lib/python3.14/dist-packages/scitbx/graph/tst_tardy_tree_find_paths.py usr/lib/python3.14/dist-packages/scitbx/graph/tst_utils.py usr/lib/python3.14/dist-packages/scitbx/graph/utils.py usr/lib/python3.14/dist-packages/scitbx/graphics_utils/ usr/lib/python3.14/dist-packages/scitbx/graphics_utils/__init__.py usr/lib/python3.14/dist-packages/scitbx/graphics_utils/tst.py usr/lib/python3.14/dist-packages/scitbx/iso_surface/ usr/lib/python3.14/dist-packages/scitbx/iso_surface/__init__.py usr/lib/python3.14/dist-packages/scitbx/iso_surface/tst_iso_surface.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/ usr/lib/python3.14/dist-packages/scitbx/lbfgs/__init__.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/tst_curvatures.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/tst_ext.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/tst_func_free_line_search.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/tst_mpi_split_evaluator.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/dev/ usr/lib/python3.14/dist-packages/scitbx/lbfgs/dev/__init__.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/dev/run.py usr/lib/python3.14/dist-packages/scitbx/lbfgs/dev/twisted_gaussian.py usr/lib/python3.14/dist-packages/scitbx/linalg/ usr/lib/python3.14/dist-packages/scitbx/linalg/__init__.py usr/lib/python3.14/dist-packages/scitbx/linalg/eigensystem.py usr/lib/python3.14/dist-packages/scitbx/linalg/ext.py usr/lib/python3.14/dist-packages/scitbx/linalg/householder.py usr/lib/python3.14/dist-packages/scitbx/linalg/svd.py usr/lib/python3.14/dist-packages/scitbx/linalg/boost_python/ usr/lib/python3.14/dist-packages/scitbx/linalg/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/ usr/lib/python3.14/dist-packages/scitbx/linalg/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/tst_cholesky.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/tst_eigensystem.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/tst_lapack_dsyev.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/tst_lapack_svd.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/tst_matrix.py usr/lib/python3.14/dist-packages/scitbx/linalg/tests/tst_svd.py usr/lib/python3.14/dist-packages/scitbx/line_search/ usr/lib/python3.14/dist-packages/scitbx/line_search/__init__.py usr/lib/python3.14/dist-packages/scitbx/lstbx/ usr/lib/python3.14/dist-packages/scitbx/lstbx/__init__.py usr/lib/python3.14/dist-packages/scitbx/lstbx/normal_eqns.py usr/lib/python3.14/dist-packages/scitbx/lstbx/normal_eqns_solving.py usr/lib/python3.14/dist-packages/scitbx/lstbx/benchmarks/ usr/lib/python3.14/dist-packages/scitbx/lstbx/benchmarks/__init__.py usr/lib/python3.14/dist-packages/scitbx/lstbx/boost_python/ usr/lib/python3.14/dist-packages/scitbx/lstbx/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/lstbx/tests/ usr/lib/python3.14/dist-packages/scitbx/lstbx/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/lstbx/tests/test_problems.py usr/lib/python3.14/dist-packages/scitbx/lstbx/tests/tst_normal_equations.py usr/lib/python3.14/dist-packages/scitbx/math/ usr/lib/python3.14/dist-packages/scitbx/math/__init__.py usr/lib/python3.14/dist-packages/scitbx/math/besselk.py usr/lib/python3.14/dist-packages/scitbx/math/breakpoint.py usr/lib/python3.14/dist-packages/scitbx/math/chebyshev_lsq_fit.py usr/lib/python3.14/dist-packages/scitbx/math/clustering.py usr/lib/python3.14/dist-packages/scitbx/math/cubic_spline.py usr/lib/python3.14/dist-packages/scitbx/math/curve_fitting.py usr/lib/python3.14/dist-packages/scitbx/math/des_3_100_13.py usr/lib/python3.14/dist-packages/scitbx/math/des_3_240_21.py usr/lib/python3.14/dist-packages/scitbx/math/distributions.py usr/lib/python3.14/dist-packages/scitbx/math/euler_angles.py usr/lib/python3.14/dist-packages/scitbx/math/ext.py usr/lib/python3.14/dist-packages/scitbx/math/farey.py usr/lib/python3.14/dist-packages/scitbx/math/fit_peak.py usr/lib/python3.14/dist-packages/scitbx/math/fit_quadratic_function.py usr/lib/python3.14/dist-packages/scitbx/math/fliege_mayer_400.py usr/lib/python3.14/dist-packages/scitbx/math/fliege_mayer_900.py usr/lib/python3.14/dist-packages/scitbx/math/fliege_mayer_900_ylm.py usr/lib/python3.14/dist-packages/scitbx/math/gaussian.py usr/lib/python3.14/dist-packages/scitbx/math/gaussian_fit.py usr/lib/python3.14/dist-packages/scitbx/math/gumbel.py usr/lib/python3.14/dist-packages/scitbx/math/incremental_SO3_sampling.py usr/lib/python3.14/dist-packages/scitbx/math/lefebvre.py usr/lib/python3.14/dist-packages/scitbx/math/minimum_covering_ellipsoid.py usr/lib/python3.14/dist-packages/scitbx/math/multiple_superposition.py usr/lib/python3.14/dist-packages/scitbx/math/periodogram.py usr/lib/python3.14/dist-packages/scitbx/math/scale_curves.py usr/lib/python3.14/dist-packages/scitbx/math/sieve_of_eratosthenes.py usr/lib/python3.14/dist-packages/scitbx/math/so3_lie_algebra.py usr/lib/python3.14/dist-packages/scitbx/math/spe.py usr/lib/python3.14/dist-packages/scitbx/math/sphere_sphere_intersection.py usr/lib/python3.14/dist-packages/scitbx/math/superpose.py usr/lib/python3.14/dist-packages/scitbx/math/tst_2d_zernike.py usr/lib/python3.14/dist-packages/scitbx/math/tst_bessel_zeros.py usr/lib/python3.14/dist-packages/scitbx/math/tst_multivariate_moments.py usr/lib/python3.14/dist-packages/scitbx/math/tst_so3_lie_algebra.py usr/lib/python3.14/dist-packages/scitbx/math/tst_undirected_graph.py usr/lib/python3.14/dist-packages/scitbx/math/tst_zernike.py usr/lib/python3.14/dist-packages/scitbx/math/tst_zernike_mom.py usr/lib/python3.14/dist-packages/scitbx/math/undirected_graph.py usr/lib/python3.14/dist-packages/scitbx/math/zernike_align_fft.py usr/lib/python3.14/dist-packages/scitbx/math/boost_python/ usr/lib/python3.14/dist-packages/scitbx/math/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/math/dev/ usr/lib/python3.14/dist-packages/scitbx/math/dev/__init__.py usr/lib/python3.14/dist-packages/scitbx/math/erf/ usr/lib/python3.14/dist-packages/scitbx/math/erf/__init__.py usr/lib/python3.14/dist-packages/scitbx/math/tests/ usr/lib/python3.14/dist-packages/scitbx/math/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_angle_derivative.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_bessel.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_clustering.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_cubic_equation.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_curve_fitting.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_dmatrix.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_error_propagation_matrix_inverse.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_euler_angles.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_exp_functions.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_fit_peak.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_fit_quadratic_function.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_g_function.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_gaussian.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_gcd.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_halton.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_line_search.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_math.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_minimum_covering_ellipsoid.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_orthonormal_basis.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_periodogram.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_quadrature.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_r3_rotation.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_resample.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_similarity_indices.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_superpose.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_tetrahedron.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_uniform_rotation_matrix.py usr/lib/python3.14/dist-packages/scitbx/math/tests/tst_weighted_correlation.py usr/lib/python3.14/dist-packages/scitbx/matrix/ usr/lib/python3.14/dist-packages/scitbx/matrix/__init__.py usr/lib/python3.14/dist-packages/scitbx/matrix/row_echelon.py usr/lib/python3.14/dist-packages/scitbx/matrix/tests/ usr/lib/python3.14/dist-packages/scitbx/matrix/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/matrix/tests/tst_householder.py usr/lib/python3.14/dist-packages/scitbx/matrix/tests/tst_row_echelon.py usr/lib/python3.14/dist-packages/scitbx/misc/ usr/lib/python3.14/dist-packages/scitbx/misc/__init__.py usr/lib/python3.14/dist-packages/scitbx/python_utils/ usr/lib/python3.14/dist-packages/scitbx/python_utils/__init__.py usr/lib/python3.14/dist-packages/scitbx/python_utils/command_line.py usr/lib/python3.14/dist-packages/scitbx/python_utils/dicts.py usr/lib/python3.14/dist-packages/scitbx/python_utils/graph_tools.py usr/lib/python3.14/dist-packages/scitbx/python_utils/misc.py usr/lib/python3.14/dist-packages/scitbx/python_utils/random_transform.py usr/lib/python3.14/dist-packages/scitbx/python_utils/robust_statistics.py usr/lib/python3.14/dist-packages/scitbx/python_utils/signal_utils.py usr/lib/python3.14/dist-packages/scitbx/python_utils/tst_graph.py usr/lib/python3.14/dist-packages/scitbx/python_utils/tst_random_transform.py usr/lib/python3.14/dist-packages/scitbx/python_utils/tst_robust.py usr/lib/python3.14/dist-packages/scitbx/random/ usr/lib/python3.14/dist-packages/scitbx/random/__init__.py usr/lib/python3.14/dist-packages/scitbx/random/boost_python/ usr/lib/python3.14/dist-packages/scitbx/random/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/random/tests/ usr/lib/python3.14/dist-packages/scitbx/random/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/random/tests/tst_random.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/ usr/lib/python3.14/dist-packages/scitbx/rigid_body/__init__.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/tst.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/ usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/__init__.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/body_lib.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/featherstone.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/joint_lib.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/make_bundles.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/spatial_lib.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/tardy.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/tst_basic.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/tst_energy_plots.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/tst_tardy.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/essence/wx_tardy.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/ usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/__init__.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/featherstone.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/free_motion_reference_impl.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/joint_lib.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/test_simulation.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/test_utils.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_featherstone.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_free_motion.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_free_motion_hard.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_joint_lib.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_molecules.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_singular.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/tst_spherical_refinement.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/utils.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/wx_free_motion.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/wx_joint_lib.py usr/lib/python3.14/dist-packages/scitbx/rigid_body/proto/wx_molecules.py usr/lib/python3.14/dist-packages/scitbx/serialization/ usr/lib/python3.14/dist-packages/scitbx/serialization/__init__.py usr/lib/python3.14/dist-packages/scitbx/slatec/ usr/lib/python3.14/dist-packages/scitbx/slatec/__init__.py usr/lib/python3.14/dist-packages/scitbx/source_generators/ usr/lib/python3.14/dist-packages/scitbx/source_generators/__init__.py usr/lib/python3.14/dist-packages/scitbx/source_generators/flex_fwd_h.py usr/lib/python3.14/dist-packages/scitbx/source_generators/lbfgs_fem.py usr/lib/python3.14/dist-packages/scitbx/source_generators/utils.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/ usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/__init__.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_algebras.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_all.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_apply.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_operator_functors.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_operator_traits_builtin.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_reductions.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/generate_std_imports.py usr/lib/python3.14/dist-packages/scitbx/source_generators/array_family/operator_functor_info.py usr/lib/python3.14/dist-packages/scitbx/sparse/ usr/lib/python3.14/dist-packages/scitbx/sparse/__init__.py usr/lib/python3.14/dist-packages/scitbx/sparse/boost_python/ usr/lib/python3.14/dist-packages/scitbx/sparse/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/sparse/tests/ usr/lib/python3.14/dist-packages/scitbx/sparse/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/sparse/tests/tst_lu_factorization.py usr/lib/python3.14/dist-packages/scitbx/sparse/tests/tst_sparse.py usr/lib/python3.14/dist-packages/scitbx/stdlib/ usr/lib/python3.14/dist-packages/scitbx/stdlib/__init__.py usr/lib/python3.14/dist-packages/scitbx/stl/ usr/lib/python3.14/dist-packages/scitbx/stl/__init__.py usr/lib/python3.14/dist-packages/scitbx/stl/map.py usr/lib/python3.14/dist-packages/scitbx/stl/set.py usr/lib/python3.14/dist-packages/scitbx/stl/tst_map.py usr/lib/python3.14/dist-packages/scitbx/stl/tst_set.py usr/lib/python3.14/dist-packages/scitbx/stl/tst_vector.py usr/lib/python3.14/dist-packages/scitbx/stl/vector.py usr/lib/python3.14/dist-packages/scitbx/suffixtree/ usr/lib/python3.14/dist-packages/scitbx/suffixtree/__init__.py usr/lib/python3.14/dist-packages/scitbx/suffixtree/single.py usr/lib/python3.14/dist-packages/scitbx/suffixtree/boost_python/ usr/lib/python3.14/dist-packages/scitbx/suffixtree/boost_python/__init__.py usr/lib/python3.14/dist-packages/scitbx/suffixtree/test/ usr/lib/python3.14/dist-packages/scitbx/suffixtree/test/__init__.py usr/lib/python3.14/dist-packages/scitbx/suffixtree/test/tst_single.py usr/lib/python3.14/dist-packages/scitbx/tests/ usr/lib/python3.14/dist-packages/scitbx/tests/__init__.py usr/lib/python3.14/dist-packages/scitbx/tests/differential_evolution.py usr/lib/python3.14/dist-packages/scitbx/tests/direct_search_simulated_annealing.py usr/lib/python3.14/dist-packages/scitbx/tests/golden_section_search.py usr/lib/python3.14/dist-packages/scitbx/tests/simplex.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_basic.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_cubicle_neighbors.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_genetic_algorithm_with_mp.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_minimizer_lbfgs_general.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_r3_utils.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_regular_grid_on_unit_sphere.py usr/lib/python3.14/dist-packages/scitbx/tests/tst_smoothing.py usr/lib/python3.14/dist-packages/scitbx/wigner/ usr/lib/python3.14/dist-packages/scitbx/wigner/__init__.py usr/lib/python3.14/dist-packages/scitbx/wigner/tst_wigner3j.py usr/lib/python3.14/dist-packages/serialtbx/ usr/lib/python3.14/dist-packages/serialtbx/__init__.py usr/lib/python3.14/dist-packages/serialtbx/detector/ usr/lib/python3.14/dist-packages/serialtbx/detector/__init__.py usr/lib/python3.14/dist-packages/serialtbx/detector/cspad.py usr/lib/python3.14/dist-packages/serialtbx/detector/jungfrau.py usr/lib/python3.14/dist-packages/serialtbx/detector/rayonix.py usr/lib/python3.14/dist-packages/serialtbx/detector/xtc.py usr/lib/python3.14/dist-packages/serialtbx/detector/legacy_metrology/ usr/lib/python3.14/dist-packages/serialtbx/detector/legacy_metrology/__init__.py usr/lib/python3.14/dist-packages/serialtbx/detector/legacy_metrology/cspad_detector.py usr/lib/python3.14/dist-packages/serialtbx/detector/legacy_metrology/generic_detector.py usr/lib/python3.14/dist-packages/serialtbx/detector/legacy_metrology/metrology.py usr/lib/python3.14/dist-packages/serialtbx/mono_simulation/ usr/lib/python3.14/dist-packages/serialtbx/mono_simulation/__init__.py usr/lib/python3.14/dist-packages/serialtbx/mono_simulation/max_like.py usr/lib/python3.14/dist-packages/serialtbx/mono_simulation/util.py usr/lib/python3.14/dist-packages/serialtbx/util/ usr/lib/python3.14/dist-packages/serialtbx/util/__init__.py usr/lib/python3.14/dist-packages/serialtbx/util/construct_frame.py usr/lib/python3.14/dist-packages/serialtbx/util/energy_scan_notch_finder.py usr/lib/python3.14/dist-packages/serialtbx/util/time.py usr/lib/python3.14/dist-packages/simtbx/ usr/lib/python3.14/dist-packages/simtbx/__init__.py usr/lib/python3.14/dist-packages/simtbx/run_tests.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/ usr/lib/python3.14/dist-packages/simtbx/diffBragg/__init__.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/attr_list.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/device.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/ensemble_refine_launcher.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/hopper_ensemble_utils.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/hopper_io.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/hopper_utils.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/mpi_logger.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/parameter_errors.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/phil.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/prep_stage2_input.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/psf.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/stage_two_utils.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/utils.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/ usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/__init__.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/base_refiner.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/geometry.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/parameters.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/stage_two_refiner.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/ usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/__init__.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/hexagonal.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/manager.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/monoclinic.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py usr/lib/python3.14/dist-packages/simtbx/diffBragg/refiners/crystal_systems/tetragonal.py usr/lib/python3.14/dist-packages/simtbx/gpu/ usr/lib/python3.14/dist-packages/simtbx/gpu/__init__.py usr/lib/python3.14/dist-packages/simtbx/gpu/tst_exafel_api.py usr/lib/python3.14/dist-packages/simtbx/gpu/tst_gpu_multisource_background.py usr/lib/python3.14/dist-packages/simtbx/gpu/tst_shoeboxes.py usr/lib/python3.14/dist-packages/simtbx/kokkos/ usr/lib/python3.14/dist-packages/simtbx/kokkos/__init__.py usr/lib/python3.14/dist-packages/simtbx/kokkos/tst_kokkos_lib.py usr/lib/python3.14/dist-packages/simtbx/modeling/ usr/lib/python3.14/dist-packages/simtbx/modeling/FormatHDF5AttributeGeometry.py usr/lib/python3.14/dist-packages/simtbx/modeling/__init__.py usr/lib/python3.14/dist-packages/simtbx/modeling/forward_models.py usr/lib/python3.14/dist-packages/simtbx/modeling/predictions.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/ usr/lib/python3.14/dist-packages/simtbx/nanoBragg/__init__.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/anisotropic_mosaicity.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_beam.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_crystal.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_gui_dialogs.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_gui_frames.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_gui_init.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_input.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/nanoBragg_threads.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/sim_data.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_anisotropic_mosaicity.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_gauss_argchk.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_gaussian_mosaicity.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_gaussian_mosaicity2.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_multisource_background.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_nanoBragg_basic.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_nanoBragg_cbf_write.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_nanoBragg_minimal.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_nanoBragg_mosaic.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_nanoBragg_multipanel.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/tst_nanoBragg_pilatus.py usr/lib/python3.14/dist-packages/simtbx/nanoBragg/utils.py usr/lib/python3.14/dist-packages/simtbx/pixel/ usr/lib/python3.14/dist-packages/simtbx/pixel/__init__.py usr/lib/python3.14/dist-packages/smtbx/ usr/lib/python3.14/dist-packages/smtbx/__init__.py usr/lib/python3.14/dist-packages/smtbx/development.py usr/lib/python3.14/dist-packages/smtbx/libtbx_refresh.py usr/lib/python3.14/dist-packages/smtbx/run_tests.py usr/lib/python3.14/dist-packages/smtbx/utils.py usr/lib/python3.14/dist-packages/smtbx/ab_initio/ usr/lib/python3.14/dist-packages/smtbx/ab_initio/__init__.py usr/lib/python3.14/dist-packages/smtbx/ab_initio/charge_flipping.py usr/lib/python3.14/dist-packages/smtbx/ab_initio/tests/ usr/lib/python3.14/dist-packages/smtbx/ab_initio/tests/__init__.py usr/lib/python3.14/dist-packages/smtbx/ab_initio/tests/tst_ab_initio_ext.py usr/lib/python3.14/dist-packages/smtbx/ab_initio/tests/tst_charge_flipping.py usr/lib/python3.14/dist-packages/smtbx/absolute_structure/ usr/lib/python3.14/dist-packages/smtbx/absolute_structure/__init__.py usr/lib/python3.14/dist-packages/smtbx/array_family/ usr/lib/python3.14/dist-packages/smtbx/array_family/__init__.py usr/lib/python3.14/dist-packages/smtbx/command_line/ usr/lib/python3.14/dist-packages/smtbx/command_line/__init__.py usr/lib/python3.14/dist-packages/smtbx/command_line/absolute_structure.py usr/lib/python3.14/dist-packages/smtbx/command_line/anom_refine.py usr/lib/python3.14/dist-packages/smtbx/command_line/benchmark_refinement.py usr/lib/python3.14/dist-packages/smtbx/command_line/masks.py usr/lib/python3.14/dist-packages/smtbx/command_line/refine.py usr/lib/python3.14/dist-packages/smtbx/masks/ usr/lib/python3.14/dist-packages/smtbx/masks/__init__.py usr/lib/python3.14/dist-packages/smtbx/refinement/ usr/lib/python3.14/dist-packages/smtbx/refinement/__init__.py usr/lib/python3.14/dist-packages/smtbx/refinement/least_squares.py usr/lib/python3.14/dist-packages/smtbx/refinement/weighting_schemes.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/ usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/__init__.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/adp.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/all.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/fpfdp.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/occupancy.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/rigid.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/site.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/geometrical/ usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/geometrical/__init__.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/geometrical/all.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/geometrical/hydrogens.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/ usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/__init__.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_direction.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_disorder.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_lbfgs.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_occupancies.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_reparametrisation.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_rigid.py usr/lib/python3.14/dist-packages/smtbx/refinement/constraints/tests/tst_same_group.py usr/lib/python3.14/dist-packages/smtbx/refinement/restraints/ usr/lib/python3.14/dist-packages/smtbx/refinement/restraints/__init__.py usr/lib/python3.14/dist-packages/smtbx/refinement/restraints/adp_restraints.py usr/lib/python3.14/dist-packages/smtbx/refinement/restraints/origin_fixing_restraints.py usr/lib/python3.14/dist-packages/smtbx/regression/ usr/lib/python3.14/dist-packages/smtbx/regression/__init__.py usr/lib/python3.14/dist-packages/smtbx/regression/tst_commandline_anomrefine.py usr/lib/python3.14/dist-packages/smtbx/regression/tst_commandline_refine.py usr/lib/python3.14/dist-packages/smtbx/regression/test_data/ usr/lib/python3.14/dist-packages/smtbx/regression/test_data/__init__.py usr/lib/python3.14/dist-packages/smtbx/source_generators/ usr/lib/python3.14/dist-packages/smtbx/source_generators/__init__.py usr/lib/python3.14/dist-packages/smtbx/source_generators/flex_fwd_h.py usr/lib/python3.14/dist-packages/smtbx/stl/ usr/lib/python3.14/dist-packages/smtbx/stl/__init__.py usr/lib/python3.14/dist-packages/smtbx/stl/map.py usr/lib/python3.14/dist-packages/smtbx/structure_factors/ usr/lib/python3.14/dist-packages/smtbx/structure_factors/__init__.py usr/lib/python3.14/dist-packages/smtbx/structure_factors/direct/ usr/lib/python3.14/dist-packages/smtbx/structure_factors/direct/__init__.py usr/lib/python3.14/dist-packages/spotfinder/ usr/lib/python3.14/dist-packages/spotfinder/__init__.py usr/lib/python3.14/dist-packages/spotfinder/exception.py usr/lib/python3.14/dist-packages/spotfinder/run_tests.py usr/lib/python3.14/dist-packages/spotfinder/applications/ usr/lib/python3.14/dist-packages/spotfinder/applications/__init__.py usr/lib/python3.14/dist-packages/spotfinder/applications/image_viewer.py usr/lib/python3.14/dist-packages/spotfinder/applications/practical_heuristics.py usr/lib/python3.14/dist-packages/spotfinder/applications/signal_strength.py usr/lib/python3.14/dist-packages/spotfinder/applications/stats_distl.py usr/lib/python3.14/dist-packages/spotfinder/applications/wrappers.py usr/lib/python3.14/dist-packages/spotfinder/applications/heuristic_tbx/ usr/lib/python3.14/dist-packages/spotfinder/applications/heuristic_tbx/__init__.py usr/lib/python3.14/dist-packages/spotfinder/applications/heuristic_tbx/ice2.py usr/lib/python3.14/dist-packages/spotfinder/applications/heuristic_tbx/ice_nztt.py usr/lib/python3.14/dist-packages/spotfinder/applications/heuristic_tbx/method2_resolution.py usr/lib/python3.14/dist-packages/spotfinder/applications/heuristic_tbx/spotreporter.py usr/lib/python3.14/dist-packages/spotfinder/applications/xfel/ usr/lib/python3.14/dist-packages/spotfinder/applications/xfel/__init__.py usr/lib/python3.14/dist-packages/spotfinder/applications/xfel/correction_vector_plot.py usr/lib/python3.14/dist-packages/spotfinder/applications/xfel/cxi_phil.py usr/lib/python3.14/dist-packages/spotfinder/applications/xfel/cxi_run3.py usr/lib/python3.14/dist-packages/spotfinder/array_family/ usr/lib/python3.14/dist-packages/spotfinder/array_family/__init__.py usr/lib/python3.14/dist-packages/spotfinder/array_family/flex.py usr/lib/python3.14/dist-packages/spotfinder/command_line/ usr/lib/python3.14/dist-packages/spotfinder/command_line/__init__.py usr/lib/python3.14/dist-packages/spotfinder/command_line/find_active_area.py usr/lib/python3.14/dist-packages/spotfinder/command_line/image_viewer.py usr/lib/python3.14/dist-packages/spotfinder/command_line/mp_spotfinder_server_read_file.py usr/lib/python3.14/dist-packages/spotfinder/command_line/signal_strength.py usr/lib/python3.14/dist-packages/spotfinder/command_line/sweep_strength.py usr/lib/python3.14/dist-packages/spotfinder/command_line/thin_client.py usr/lib/python3.14/dist-packages/spotfinder/core_toolbox/ usr/lib/python3.14/dist-packages/spotfinder/core_toolbox/__init__.py usr/lib/python3.14/dist-packages/spotfinder/core_toolbox/close_spots_detail.py usr/lib/python3.14/dist-packages/spotfinder/diffraction/ usr/lib/python3.14/dist-packages/spotfinder/diffraction/__init__.py usr/lib/python3.14/dist-packages/spotfinder/diffraction/geometry.py usr/lib/python3.14/dist-packages/spotfinder/diffraction/imagefiles.py usr/lib/python3.14/dist-packages/spotfinder/dxtbx_toolbox/ usr/lib/python3.14/dist-packages/spotfinder/dxtbx_toolbox/__init__.py usr/lib/python3.14/dist-packages/spotfinder/dxtbx_toolbox/practical_heuristics.py usr/lib/python3.14/dist-packages/spotfinder/math_support/ usr/lib/python3.14/dist-packages/spotfinder/math_support/__init__.py usr/lib/python3.14/dist-packages/spotfinder/math_support/sphere_formulae.py usr/lib/python3.14/dist-packages/spotfinder/servers/ usr/lib/python3.14/dist-packages/spotfinder/servers/__init__.py usr/lib/python3.14/dist-packages/spotfinder/servers/adsc_client.py usr/lib/python3.14/dist-packages/spotfinder/servers/apache.py usr/lib/python3.14/dist-packages/spotfinder/servers/apache_bcsb.py usr/lib/python3.14/dist-packages/spotfinder/servers/apache_dials.py usr/lib/python3.14/dist-packages/spotfinder/servers/apache_utils.py usr/lib/python3.14/dist-packages/spotfinder/servers/bcsb_client_example.py usr/lib/python3.14/dist-packages/spotfinder/servers/general_client_example.py usr/lib/python3.14/dist-packages/spotfinder/servers/mp_spotfinder_server_is_alive.py usr/lib/python3.14/dist-packages/spotfinder/servers/mp_spotfinder_server_read_file.py usr/lib/python3.14/dist-packages/spotfinder/servers/multipart_encoder.py usr/lib/python3.14/dist-packages/spotfinder/servers/pilatus_client.py usr/lib/python3.14/dist-packages/spotfinder/servers/specific_client_example.py usr/lib/python3.14/dist-packages/spotfinder/servers/spotfinder_server_client_push.py usr/lib/python3.14/dist-packages/spotfinder/servers/spotfinder_server_read_file.py usr/lib/python3.14/dist-packages/spotfinder/servers/thin_client.py usr/lib/python3.14/dist-packages/wxtbx/ usr/lib/python3.14/dist-packages/wxtbx/__init__.py usr/lib/python3.14/dist-packages/wxtbx/adp_statistics.py usr/lib/python3.14/dist-packages/wxtbx/anomalous_scattering.py usr/lib/python3.14/dist-packages/wxtbx/app.py usr/lib/python3.14/dist-packages/wxtbx/b_plot.py usr/lib/python3.14/dist-packages/wxtbx/bitmaps.py usr/lib/python3.14/dist-packages/wxtbx/browser.py usr/lib/python3.14/dist-packages/wxtbx/checklistctrl.py usr/lib/python3.14/dist-packages/wxtbx/custom_restraints.py usr/lib/python3.14/dist-packages/wxtbx/ensemble_validation.py usr/lib/python3.14/dist-packages/wxtbx/errors.py usr/lib/python3.14/dist-packages/wxtbx/heavy_atoms.py usr/lib/python3.14/dist-packages/wxtbx/icons.py usr/lib/python3.14/dist-packages/wxtbx/info_panels.py usr/lib/python3.14/dist-packages/wxtbx/layout.py usr/lib/python3.14/dist-packages/wxtbx/listeditor.py usr/lib/python3.14/dist-packages/wxtbx/metallicbutton.py usr/lib/python3.14/dist-packages/wxtbx/misc_dialogs.py usr/lib/python3.14/dist-packages/wxtbx/monitor.py usr/lib/python3.14/dist-packages/wxtbx/mtz_dump.py usr/lib/python3.14/dist-packages/wxtbx/path_dialogs.py usr/lib/python3.14/dist-packages/wxtbx/pdb_editor.py usr/lib/python3.14/dist-packages/wxtbx/polygon.py usr/lib/python3.14/dist-packages/wxtbx/polygon_db_viewer.py usr/lib/python3.14/dist-packages/wxtbx/process_control.py usr/lib/python3.14/dist-packages/wxtbx/qstat_view.py usr/lib/python3.14/dist-packages/wxtbx/run_tests.py usr/lib/python3.14/dist-packages/wxtbx/segmentedctrl.py usr/lib/python3.14/dist-packages/wxtbx/sequence_view.py usr/lib/python3.14/dist-packages/wxtbx/symmetry_dialog.py usr/lib/python3.14/dist-packages/wxtbx/tables.py usr/lib/python3.14/dist-packages/wxtbx/utils.py usr/lib/python3.14/dist-packages/wxtbx/windows.py usr/lib/python3.14/dist-packages/wxtbx/xtriage.py usr/lib/python3.14/dist-packages/wxtbx/command_line/ usr/lib/python3.14/dist-packages/wxtbx/command_line/__init__.py usr/lib/python3.14/dist-packages/wxtbx/command_line/anomalous_differences_histogram.py usr/lib/python3.14/dist-packages/wxtbx/command_line/b_plot.py usr/lib/python3.14/dist-packages/wxtbx/command_line/inspect_r_free_flags.py usr/lib/python3.14/dist-packages/wxtbx/command_line/loggraph.py usr/lib/python3.14/dist-packages/wxtbx/command_line/pdb_editor.py usr/lib/python3.14/dist-packages/wxtbx/command_line/pdb_statistics.py usr/lib/python3.14/dist-packages/wxtbx/command_line/plan_sad_experiment.py usr/lib/python3.14/dist-packages/wxtbx/command_line/plot_anomalous_scattering.py usr/lib/python3.14/dist-packages/wxtbx/command_line/show_file_info.py usr/lib/python3.14/dist-packages/wxtbx/command_line/wxpython.py usr/lib/python3.14/dist-packages/wxtbx/command_line/xtriage.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/ usr/lib/python3.14/dist-packages/wxtbx/phil_controls/__init__.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/array_label.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/boolctrl.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/choice.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/choice_multi.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/floatctrl.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/floats.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/intctrl.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/ints.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/misc_ctrls.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/numbers.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/path.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/simple_dialogs.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/space_group.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/strctrl.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/strings.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/symop.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/text_base.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/tree.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/tribool.py usr/lib/python3.14/dist-packages/wxtbx/phil_controls/unit_cell.py usr/lib/python3.14/dist-packages/wxtbx/plots/ usr/lib/python3.14/dist-packages/wxtbx/plots/__init__.py usr/lib/python3.14/dist-packages/wxtbx/plots/emringer.py usr/lib/python3.14/dist-packages/wxtbx/plots/molprobity.py usr/lib/python3.14/dist-packages/wxtbx/regression/ usr/lib/python3.14/dist-packages/wxtbx/regression/__init__.py usr/lib/python3.14/dist-packages/wxtbx/regression/_headless_construct_cases.py usr/lib/python3.14/dist-packages/wxtbx/regression/_warnings.py usr/lib/python3.14/dist-packages/wxtbx/regression/tst_b_plot.py usr/lib/python3.14/dist-packages/wxtbx/regression/tst_headless_construct.py usr/lib/python3.14/dist-packages/wxtbx/regression/tst_imports.py usr/lib/python3.14/dist-packages/wxtbx/regression/tst_process_control.py usr/lib/python3.14/dist-packages/wxtbx/reports/ usr/lib/python3.14/dist-packages/wxtbx/reports/__init__.py usr/lib/python3.14/dist-packages/wxtbx/reports/blast.py usr/lib/python3.14/dist-packages/wxtbx/reports/pdb_symmetry.py usr/lib/python3.14/dist-packages/xcif/ usr/lib/python3.14/dist-packages/xcif/__init__.py usr/lib/python3.14/dist-packages/xcif/run_tests.py usr/lib/python3.14/dist-packages/xcif/benchmarks/ usr/lib/python3.14/dist-packages/xcif/benchmarks/__init__.py usr/lib/python3.14/dist-packages/xcif/benchmarks/run_benchmarks.py usr/lib/python3.14/dist-packages/xcif/regression/ usr/lib/python3.14/dist-packages/xcif/regression/__init__.py usr/lib/python3.14/dist-packages/xcif/regression/tst_api_compat.py usr/lib/python3.14/dist-packages/xcif/regression/tst_bindings.py usr/lib/python3.14/dist-packages/xcif/regression/tst_example_parse.py usr/lib/python3.14/dist-packages/xcif/regression/tst_example_tokenize.py usr/lib/python3.14/dist-packages/xcif/regression/tst_gil_release.py usr/lib/python3.14/dist-packages/xcif/regression/tst_iotbx_cif_reader_engine.py usr/lib/python3.14/dist-packages/xcif/regression/tst_iotbx_cif_reader_parity.py usr/lib/python3.14/dist-packages/xcif/regression/tst_memory.py usr/lib/python3.14/dist-packages/xcif/regression/tst_non_strict_mode.py usr/lib/python3.14/dist-packages/xcif/regression/tst_parse_verify.py usr/lib/python3.14/dist-packages/xcif/regression/tst_pdb_coordinates.py usr/lib/python3.14/dist-packages/xcif/regression/tst_pdb_sf.py usr/lib/python3.14/dist-packages/xcif/regression/tst_quoted_string_delimiter.py usr/lib/python3.14/dist-packages/xcif/regression/tst_roundtrip.py usr/lib/python3.14/dist-packages/xcif/regression/tst_semicolon_field_strict.py usr/lib/python3.14/dist-packages/xcif/regression/tst_string_interning.py usr/lib/python3.14/dist-packages/xcif/regression/tst_utf8.py usr/lib/python3.15/ usr/lib/python3.15/dist-packages/ usr/lib/python3.15/dist-packages/annlib_ext.so usr/lib/python3.15/dist-packages/boost_adaptbx_boost_thread_test_ext.so usr/lib/python3.15/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.so usr/lib/python3.15/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.so usr/lib/python3.15/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.so usr/lib/python3.15/dist-packages/boost_adaptbx_graph_ext.so usr/lib/python3.15/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.so usr/lib/python3.15/dist-packages/boost_adaptbx_graph_maximum_clique_ext.so usr/lib/python3.15/dist-packages/boost_adaptbx_graph_metric_ext.so usr/lib/python3.15/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.so usr/lib/python3.15/dist-packages/boost_adaptbx_graph_utility_ext.so usr/lib/python3.15/dist-packages/boost_adaptbx_python_streambuf_test_ext.so usr/lib/python3.15/dist-packages/boost_optional_ext.so usr/lib/python3.15/dist-packages/boost_python_hybrid_times_ext.so usr/lib/python3.15/dist-packages/boost_python_meta_ext.so usr/lib/python3.15/dist-packages/boost_rational_ext.so usr/lib/python3.15/dist-packages/boost_tuple_ext.so usr/lib/python3.15/dist-packages/cbflib_ext.so usr/lib/python3.15/dist-packages/cctbx_adp_restraints_ext.so usr/lib/python3.15/dist-packages/cctbx_adptbx_ext.so usr/lib/python3.15/dist-packages/cctbx_anharmonic_ext.so usr/lib/python3.15/dist-packages/cctbx_array_family_flex_ext.so usr/lib/python3.15/dist-packages/cctbx_asymmetric_map_ext.so usr/lib/python3.15/dist-packages/cctbx_covariance_ext.so usr/lib/python3.15/dist-packages/cctbx_crystal_ext.so usr/lib/python3.15/dist-packages/cctbx_dmtbx_ext.so usr/lib/python3.15/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.so usr/lib/python3.15/dist-packages/cctbx_eltbx_chemical_elements_ext.so usr/lib/python3.15/dist-packages/cctbx_eltbx_covalent_radii_ext.so usr/lib/python3.15/dist-packages/cctbx_eltbx_fp_fdp_ext.so usr/lib/python3.15/dist-packages/cctbx_eltbx_henke_ext.so usr/lib/python3.15/dist-packages/cctbx_eltbx_icsd_radii_ext.so usr/lib/python3.15/dist-packages/cctbx_eltbx_neutron_ext.so usr/lib/python3.15/dist-packages/cctbx_eltbx_sasaki_ext.so usr/lib/python3.15/dist-packages/cctbx_eltbx_tiny_pse_ext.so usr/lib/python3.15/dist-packages/cctbx_eltbx_wavelengths_ext.so usr/lib/python3.15/dist-packages/cctbx_eltbx_xray_scattering_ext.so usr/lib/python3.15/dist-packages/cctbx_emma_ext.so usr/lib/python3.15/dist-packages/cctbx_french_wilson_ext.so usr/lib/python3.15/dist-packages/cctbx_geometry_ext.so usr/lib/python3.15/dist-packages/cctbx_geometry_restraints_ext.so usr/lib/python3.15/dist-packages/cctbx_maptbx_bcr_bcr_ext.so usr/lib/python3.15/dist-packages/cctbx_maptbx_ext.so usr/lib/python3.15/dist-packages/cctbx_masks_ext.so usr/lib/python3.15/dist-packages/cctbx_math_ext.so usr/lib/python3.15/dist-packages/cctbx_merging_ext.so usr/lib/python3.15/dist-packages/cctbx_miller_ext.so usr/lib/python3.15/dist-packages/cctbx_multipolar_ext.so usr/lib/python3.15/dist-packages/cctbx_orientation_ext.so usr/lib/python3.15/dist-packages/cctbx_sgtbx_asu_ext.so usr/lib/python3.15/dist-packages/cctbx_sgtbx_ext.so usr/lib/python3.15/dist-packages/cctbx_statistics_ext.so usr/lib/python3.15/dist-packages/cctbx_symmetry_search_ext.so usr/lib/python3.15/dist-packages/cctbx_translation_search_ext.so usr/lib/python3.15/dist-packages/cctbx_uctbx_ext.so usr/lib/python3.15/dist-packages/cctbx_xray_ext.so usr/lib/python3.15/dist-packages/cctbx_xray_observations_ext.so usr/lib/python3.15/dist-packages/cma_es_ext.so usr/lib/python3.15/dist-packages/determine_unit_cell_ext.so usr/lib/python3.15/dist-packages/dxtbx_ext.so usr/lib/python3.15/dist-packages/dxtbx_flumpy.so usr/lib/python3.15/dist-packages/dxtbx_format_image_ext.so usr/lib/python3.15/dist-packages/dxtbx_format_nexus_ext.so usr/lib/python3.15/dist-packages/dxtbx_imageset_ext.so usr/lib/python3.15/dist-packages/dxtbx_masking_ext.so usr/lib/python3.15/dist-packages/dxtbx_model_ext.so usr/lib/python3.15/dist-packages/fable_ext.so usr/lib/python3.15/dist-packages/gltbx_fonts_ext.so usr/lib/python3.15/dist-packages/gltbx_gl_ext.so usr/lib/python3.15/dist-packages/gltbx_glu_ext.so usr/lib/python3.15/dist-packages/gltbx_quadrics_ext.so usr/lib/python3.15/dist-packages/gltbx_util_ext.so usr/lib/python3.15/dist-packages/gltbx_viewer_utils_ext.so usr/lib/python3.15/dist-packages/iotbx_ccp4_map_ext.so usr/lib/python3.15/dist-packages/iotbx_cif_ext.so usr/lib/python3.15/dist-packages/iotbx_detectors_bruker_ext.so usr/lib/python3.15/dist-packages/iotbx_detectors_ext.so usr/lib/python3.15/dist-packages/iotbx_dsn6_map_ext.so usr/lib/python3.15/dist-packages/iotbx_dtrek_ext.so usr/lib/python3.15/dist-packages/iotbx_mtz_ext.so usr/lib/python3.15/dist-packages/iotbx_pdb_ext.so usr/lib/python3.15/dist-packages/iotbx_pdb_hierarchy_ext.so usr/lib/python3.15/dist-packages/iotbx_scalepack_ext.so usr/lib/python3.15/dist-packages/iotbx_shelx_ext.so usr/lib/python3.15/dist-packages/iotbx_wildcard_ext.so usr/lib/python3.15/dist-packages/iotbx_xplor_ext.so usr/lib/python3.15/dist-packages/mmtbx_alignment_ext.so usr/lib/python3.15/dist-packages/mmtbx_building_loop_closure_ext.so usr/lib/python3.15/dist-packages/mmtbx_bulk_solvent_ext.so usr/lib/python3.15/dist-packages/mmtbx_den_restraints_ext.so usr/lib/python3.15/dist-packages/mmtbx_dssp_ext.so usr/lib/python3.15/dist-packages/mmtbx_dynamics_ext.so usr/lib/python3.15/dist-packages/mmtbx_f_model_ext.so usr/lib/python3.15/dist-packages/mmtbx_geometry_asa_ext.so usr/lib/python3.15/dist-packages/mmtbx_geometry_clash_ext.so usr/lib/python3.15/dist-packages/mmtbx_geometry_indexing_ext.so usr/lib/python3.15/dist-packages/mmtbx_geometry_primitive_ext.so usr/lib/python3.15/dist-packages/mmtbx_geometry_shared_types_ext.so usr/lib/python3.15/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.so usr/lib/python3.15/dist-packages/mmtbx_hydrogens_ext.so usr/lib/python3.15/dist-packages/mmtbx_masks_ext.so usr/lib/python3.15/dist-packages/mmtbx_max_lik_ext.so usr/lib/python3.15/dist-packages/mmtbx_mosaic_ext.so usr/lib/python3.15/dist-packages/mmtbx_ncs_cartesian_restraints_ext.so usr/lib/python3.15/dist-packages/mmtbx_ncs_ext.so usr/lib/python3.15/dist-packages/mmtbx_pair_interaction_ext.so usr/lib/python3.15/dist-packages/mmtbx_probe_ext.so usr/lib/python3.15/dist-packages/mmtbx_ramachandran_restraints_ext.so usr/lib/python3.15/dist-packages/mmtbx_reduce_ext.so usr/lib/python3.15/dist-packages/mmtbx_reference_coordinate_ext.so usr/lib/python3.15/dist-packages/mmtbx_rotamer_fit_ext.so usr/lib/python3.15/dist-packages/mmtbx_rsr_ext.so usr/lib/python3.15/dist-packages/mmtbx_scaling_ext.so usr/lib/python3.15/dist-packages/mmtbx_secondary_structure_ext.so usr/lib/python3.15/dist-packages/mmtbx_tls_decompose_ext.so usr/lib/python3.15/dist-packages/mmtbx_tls_ext.so usr/lib/python3.15/dist-packages/mmtbx_tls_optimise_amplitudes_ext.so usr/lib/python3.15/dist-packages/mmtbx_tls_utils_ext.so usr/lib/python3.15/dist-packages/mmtbx_utils_ext.so usr/lib/python3.15/dist-packages/mmtbx_validation_ramachandran_ext.so usr/lib/python3.15/dist-packages/omptbx_ext.so usr/lib/python3.15/dist-packages/regression_test_ext.so usr/lib/python3.15/dist-packages/rstbx_array_family_flex_ext.so usr/lib/python3.15/dist-packages/rstbx_bandpass_ext.so usr/lib/python3.15/dist-packages/rstbx_bpcx_detector_model_ext.so usr/lib/python3.15/dist-packages/rstbx_diffraction_fastbragg_ext.so usr/lib/python3.15/dist-packages/rstbx_ext.so usr/lib/python3.15/dist-packages/rstbx_indexing_api_ext.so usr/lib/python3.15/dist-packages/rstbx_integration_ext.so usr/lib/python3.15/dist-packages/rstbx_simage_ext.so usr/lib/python3.15/dist-packages/rstbx_simulation_ext.so usr/lib/python3.15/dist-packages/rstbx_symmetry_constraints_ext.so usr/lib/python3.15/dist-packages/scitbx_array_family_flex_ext.so usr/lib/python3.15/dist-packages/scitbx_array_family_shared_ext.so usr/lib/python3.15/dist-packages/scitbx_cubicle_neighbors_ext.so usr/lib/python3.15/dist-packages/scitbx_fftpack_ext.so usr/lib/python3.15/dist-packages/scitbx_glmtbx_ext.so usr/lib/python3.15/dist-packages/scitbx_graphics_utils_ext.so usr/lib/python3.15/dist-packages/scitbx_iso_surface_ext.so usr/lib/python3.15/dist-packages/scitbx_lbfgs_ext.so usr/lib/python3.15/dist-packages/scitbx_lbfgsb_ext.so usr/lib/python3.15/dist-packages/scitbx_linalg_ext.so usr/lib/python3.15/dist-packages/scitbx_lstbx_normal_equations_ext.so usr/lib/python3.15/dist-packages/scitbx_math_ext.so usr/lib/python3.15/dist-packages/scitbx_minpack_ext.so usr/lib/python3.15/dist-packages/scitbx_r3_utils_ext.so usr/lib/python3.15/dist-packages/scitbx_random_ext.so usr/lib/python3.15/dist-packages/scitbx_rigid_body_ext.so usr/lib/python3.15/dist-packages/scitbx_sparse_ext.so usr/lib/python3.15/dist-packages/scitbx_stl_map_ext.so usr/lib/python3.15/dist-packages/scitbx_stl_set_ext.so usr/lib/python3.15/dist-packages/scitbx_stl_vector_ext.so usr/lib/python3.15/dist-packages/scitbx_suffixtree_shared_ext.so usr/lib/python3.15/dist-packages/scitbx_suffixtree_single_ext.so usr/lib/python3.15/dist-packages/scitbx_wigner_ext.so usr/lib/python3.15/dist-packages/smtbx_ab_initio_ext.so usr/lib/python3.15/dist-packages/smtbx_array_family_ext.so usr/lib/python3.15/dist-packages/smtbx_refinement_constraints_ext.so usr/lib/python3.15/dist-packages/smtbx_refinement_least_squares_ext.so usr/lib/python3.15/dist-packages/smtbx_refinement_restraints_ext.so usr/lib/python3.15/dist-packages/smtbx_stl_map_ext.so usr/lib/python3.15/dist-packages/smtbx_structure_factors_direct_ext.so usr/lib/python3.15/dist-packages/spotfinder_array_family_flex_ext.so usr/lib/python3.15/dist-packages/spotfinder_distltbx_ext.so usr/lib/python3.15/dist-packages/spotfinder_dxtbx_ext.so usr/lib/python3.15/dist-packages/spotfinder_hough_ext.so usr/lib/python3.15/dist-packages/std_pair_ext.so usr/lib/python3.15/dist-packages/xcif_ext.so usr/lib/python3.15/dist-packages/annlib_adaptbx/ usr/lib/python3.15/dist-packages/annlib_adaptbx/__init__.py usr/lib/python3.15/dist-packages/annlib_adaptbx/run_tests.py usr/lib/python3.15/dist-packages/annlib_adaptbx/annlib_adaptbx/ usr/lib/python3.15/dist-packages/annlib_adaptbx/annlib_adaptbx/__init__.py usr/lib/python3.15/dist-packages/annlib_adaptbx/annlib_adaptbx/sample.py usr/lib/python3.15/dist-packages/annlib_adaptbx/annlib_adaptbx/self_match.py usr/lib/python3.15/dist-packages/annlib_adaptbx/source_generators/ usr/lib/python3.15/dist-packages/annlib_adaptbx/source_generators/__init__.py usr/lib/python3.15/dist-packages/annlib_adaptbx/source_generators/generate_all.py usr/lib/python3.15/dist-packages/boost_adaptbx/ usr/lib/python3.15/dist-packages/boost_adaptbx/__init__.py usr/lib/python3.15/dist-packages/boost_adaptbx/hybrid_times.py usr/lib/python3.15/dist-packages/boost_adaptbx/libtbx_refresh.py usr/lib/python3.15/dist-packages/boost_adaptbx/run_tests.py usr/lib/python3.15/dist-packages/boost_adaptbx/boost/ usr/lib/python3.15/dist-packages/boost_adaptbx/boost/__init__.py usr/lib/python3.15/dist-packages/boost_adaptbx/boost/optional.py usr/lib/python3.15/dist-packages/boost_adaptbx/boost/python.py usr/lib/python3.15/dist-packages/boost_adaptbx/boost/rational.py usr/lib/python3.15/dist-packages/boost_adaptbx/boost/std_pair.py usr/lib/python3.15/dist-packages/boost_adaptbx/boost/tuple.py usr/lib/python3.15/dist-packages/boost_adaptbx/command_line/ usr/lib/python3.15/dist-packages/boost_adaptbx/command_line/__init__.py usr/lib/python3.15/dist-packages/boost_adaptbx/command_line/divide_by_zero.py usr/lib/python3.15/dist-packages/boost_adaptbx/command_line/double_overflow.py usr/lib/python3.15/dist-packages/boost_adaptbx/command_line/gcd.py usr/lib/python3.15/dist-packages/boost_adaptbx/command_line/inexact.py usr/lib/python3.15/dist-packages/boost_adaptbx/command_line/int_overflow.py usr/lib/python3.15/dist-packages/boost_adaptbx/command_line/lcm.py usr/lib/python3.15/dist-packages/boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py usr/lib/python3.15/dist-packages/boost_adaptbx/command_line/segmentation_fault.py usr/lib/python3.15/dist-packages/boost_adaptbx/command_line/show_environ_usage.py usr/lib/python3.15/dist-packages/boost_adaptbx/command_line/show_platform_info.py usr/lib/python3.15/dist-packages/boost_adaptbx/graph/ usr/lib/python3.15/dist-packages/boost_adaptbx/graph/__init__.py usr/lib/python3.15/dist-packages/boost_adaptbx/graph/breadth_first_search.py usr/lib/python3.15/dist-packages/boost_adaptbx/graph/clustering_algorithm.py usr/lib/python3.15/dist-packages/boost_adaptbx/graph/connected_component_algorithm.py usr/lib/python3.15/dist-packages/boost_adaptbx/graph/graph_structure_comparison.py usr/lib/python3.15/dist-packages/boost_adaptbx/graph/maximum_clique.py usr/lib/python3.15/dist-packages/boost_adaptbx/graph/metric.py usr/lib/python3.15/dist-packages/boost_adaptbx/graph/min_cut_max_flow.py usr/lib/python3.15/dist-packages/boost_adaptbx/graph/minimum_cut_enumerate.py usr/lib/python3.15/dist-packages/boost_adaptbx/graph/utility.py usr/lib/python3.15/dist-packages/cbflib_adaptbx/ usr/lib/python3.15/dist-packages/cbflib_adaptbx/__init__.py usr/lib/python3.15/dist-packages/cbflib_adaptbx/copy_files.py usr/lib/python3.15/dist-packages/cbflib_adaptbx/exercise_compression.py usr/lib/python3.15/dist-packages/cbflib_adaptbx/run_tests.py usr/lib/python3.15/dist-packages/cbflib_adaptbx/command_line/ usr/lib/python3.15/dist-packages/cbflib_adaptbx/command_line/__init__.py usr/lib/python3.15/dist-packages/cbflib_adaptbx/command_line/dump.py usr/lib/python3.15/dist-packages/ccp4io_adaptbx/ usr/lib/python3.15/dist-packages/ccp4io_adaptbx/__init__.py usr/lib/python3.15/dist-packages/ccp4io_adaptbx/copy_files.py usr/lib/python3.15/dist-packages/ccp4io_adaptbx/tst.py usr/lib/python3.15/dist-packages/cctbx-2023.12.dist-info/ usr/lib/python3.15/dist-packages/cctbx-2023.12.dist-info/METADATA usr/lib/python3.15/dist-packages/cctbx-2023.12.dist-info/RECORD usr/lib/python3.15/dist-packages/cctbx-2023.12.dist-info/WHEEL usr/lib/python3.15/dist-packages/cctbx-2023.12.dist-info/top_level.txt usr/lib/python3.15/dist-packages/cctbx-2023.12.dist-info/licenses/ usr/lib/python3.15/dist-packages/cctbx-2023.12.dist-info/licenses/LICENSE.txt usr/lib/python3.15/dist-packages/cctbx/ usr/lib/python3.15/dist-packages/cctbx/__init__.py usr/lib/python3.15/dist-packages/cctbx/adptbx.py usr/lib/python3.15/dist-packages/cctbx/anharmonic.py usr/lib/python3.15/dist-packages/cctbx/crystal_orientation.py usr/lib/python3.15/dist-packages/cctbx/dmtbx.py usr/lib/python3.15/dist-packages/cctbx/euclidean_model_matching.py usr/lib/python3.15/dist-packages/cctbx/french_wilson.py usr/lib/python3.15/dist-packages/cctbx/libtbx_refresh.py usr/lib/python3.15/dist-packages/cctbx/math_module.py usr/lib/python3.15/dist-packages/cctbx/multipolar.py usr/lib/python3.15/dist-packages/cctbx/r_free_utils.py usr/lib/python3.15/dist-packages/cctbx/run_examples.py usr/lib/python3.15/dist-packages/cctbx/run_tests.py usr/lib/python3.15/dist-packages/cctbx/statistics.py usr/lib/python3.15/dist-packages/cctbx/symmetry_search.py usr/lib/python3.15/dist-packages/cctbx/translation_search.py usr/lib/python3.15/dist-packages/cctbx/adp_restraints/ usr/lib/python3.15/dist-packages/cctbx/adp_restraints/__init__.py usr/lib/python3.15/dist-packages/cctbx/adp_restraints/energies.py usr/lib/python3.15/dist-packages/cctbx/adp_restraints/flags.py usr/lib/python3.15/dist-packages/cctbx/adp_restraints/tst_ext.py usr/lib/python3.15/dist-packages/cctbx/array_family/ usr/lib/python3.15/dist-packages/cctbx/array_family/__init__.py usr/lib/python3.15/dist-packages/cctbx/array_family/flex.py usr/lib/python3.15/dist-packages/cctbx/command_line/ usr/lib/python3.15/dist-packages/cctbx/command_line/__init__.py usr/lib/python3.15/dist-packages/cctbx/command_line/auto_sharpen.py usr/lib/python3.15/dist-packages/cctbx/command_line/brehm_diederichs.py usr/lib/python3.15/dist-packages/cctbx/command_line/cctbx_test_nightly.py usr/lib/python3.15/dist-packages/cctbx/command_line/cod_select_and_pickle.py usr/lib/python3.15/dist-packages/cctbx/command_line/diffuse.py usr/lib/python3.15/dist-packages/cctbx/command_line/eltbx.show_fp_fdp.py usr/lib/python3.15/dist-packages/cctbx/command_line/euclidean_model_matching.py usr/lib/python3.15/dist-packages/cctbx/command_line/find_reticular_twin_laws.py usr/lib/python3.15/dist-packages/cctbx/command_line/form_factor_query.py usr/lib/python3.15/dist-packages/cctbx/command_line/precession_view.py usr/lib/python3.15/dist-packages/cctbx/command_line/qscore.py usr/lib/python3.15/dist-packages/cctbx/command_line/samosa_join.py usr/lib/python3.15/dist-packages/cctbx/command_line/samosa_scale.py usr/lib/python3.15/dist-packages/cctbx/command_line/segment_and_split_map.py usr/lib/python3.15/dist-packages/cctbx/command_line/space_group_info.py usr/lib/python3.15/dist-packages/cctbx/command_line/structure_factor_timings.py usr/lib/python3.15/dist-packages/cctbx/command_line/subgroups.py usr/lib/python3.15/dist-packages/cctbx/command_line/version.py usr/lib/python3.15/dist-packages/cctbx/command_line/wavelength_units.py usr/lib/python3.15/dist-packages/cctbx/covariance/ usr/lib/python3.15/dist-packages/cctbx/covariance/__init__.py usr/lib/python3.15/dist-packages/cctbx/crystal/ usr/lib/python3.15/dist-packages/cctbx/crystal/__init__.py usr/lib/python3.15/dist-packages/cctbx/crystal/burzlaff_zimmermann_dewolff.py usr/lib/python3.15/dist-packages/cctbx/crystal/close_packing.py usr/lib/python3.15/dist-packages/cctbx/crystal/coordination_sequences.py usr/lib/python3.15/dist-packages/cctbx/crystal/direct_space_asu.py usr/lib/python3.15/dist-packages/cctbx/crystal/distance_based_connectivity.py usr/lib/python3.15/dist-packages/cctbx/crystal/find_best_cell.py usr/lib/python3.15/dist-packages/cctbx/crystal/reindex.py usr/lib/python3.15/dist-packages/cctbx/crystal/super_cell.py usr/lib/python3.15/dist-packages/cctbx/crystal/tst_distance_based_connectivity.py usr/lib/python3.15/dist-packages/cctbx/crystal/tst_ext.py usr/lib/python3.15/dist-packages/cctbx/crystal/tst_super_cell.py usr/lib/python3.15/dist-packages/cctbx/development/ usr/lib/python3.15/dist-packages/cctbx/development/__init__.py usr/lib/python3.15/dist-packages/cctbx/development/approx_amplitude_vs_resolution.py usr/lib/python3.15/dist-packages/cctbx/development/cns_density_modification.py usr/lib/python3.15/dist-packages/cctbx/development/create_models_or_maps.py usr/lib/python3.15/dist-packages/cctbx/development/debug_utils.py usr/lib/python3.15/dist-packages/cctbx/development/direct_or_fft.py usr/lib/python3.15/dist-packages/cctbx/development/electron_density_sampling.py usr/lib/python3.15/dist-packages/cctbx/development/fmt_utils.py usr/lib/python3.15/dist-packages/cctbx/development/github.py usr/lib/python3.15/dist-packages/cctbx/development/make_cns_input.py usr/lib/python3.15/dist-packages/cctbx/development/make_settings.py usr/lib/python3.15/dist-packages/cctbx/development/random_structure.py usr/lib/python3.15/dist-packages/cctbx/development/run_shelx.py usr/lib/python3.15/dist-packages/cctbx/development/run_shelx76.py usr/lib/python3.15/dist-packages/cctbx/development/space_group_option_parser.py usr/lib/python3.15/dist-packages/cctbx/development/structure_factor_utils.py usr/lib/python3.15/dist-packages/cctbx/development/tst_cns_epsilon.py usr/lib/python3.15/dist-packages/cctbx/development/tst_cns_hl.py usr/lib/python3.15/dist-packages/cctbx/eltbx/ usr/lib/python3.15/dist-packages/cctbx/eltbx/__init__.py usr/lib/python3.15/dist-packages/cctbx/eltbx/attenuation_coefficient.py usr/lib/python3.15/dist-packages/cctbx/eltbx/chemical_elements.py usr/lib/python3.15/dist-packages/cctbx/eltbx/covalent_radii.py usr/lib/python3.15/dist-packages/cctbx/eltbx/distance_based_connectivity.py usr/lib/python3.15/dist-packages/cctbx/eltbx/e_scattering.py usr/lib/python3.15/dist-packages/cctbx/eltbx/formula.py usr/lib/python3.15/dist-packages/cctbx/eltbx/fp_fdp.py usr/lib/python3.15/dist-packages/cctbx/eltbx/gaussian_fit.py usr/lib/python3.15/dist-packages/cctbx/eltbx/henke.py usr/lib/python3.15/dist-packages/cctbx/eltbx/icsd_radii.py usr/lib/python3.15/dist-packages/cctbx/eltbx/neutron.py usr/lib/python3.15/dist-packages/cctbx/eltbx/read_custom_scattering_dict.py usr/lib/python3.15/dist-packages/cctbx/eltbx/sasaki.py usr/lib/python3.15/dist-packages/cctbx/eltbx/tiny_pse.py usr/lib/python3.15/dist-packages/cctbx/eltbx/van_der_waals_radii.py usr/lib/python3.15/dist-packages/cctbx/eltbx/wavelengths.py usr/lib/python3.15/dist-packages/cctbx/eltbx/development/ usr/lib/python3.15/dist-packages/cctbx/eltbx/development/__init__.py usr/lib/python3.15/dist-packages/cctbx/eltbx/development/combine_fits.py usr/lib/python3.15/dist-packages/cctbx/eltbx/development/create_n_gaussian_raw_cpp.py usr/lib/python3.15/dist-packages/cctbx/eltbx/development/e_scattering_plots.py usr/lib/python3.15/dist-packages/cctbx/eltbx/development/format_gaussian_fits.py usr/lib/python3.15/dist-packages/cctbx/eltbx/development/hydrogen_plots.py usr/lib/python3.15/dist-packages/cctbx/eltbx/development/itvc_approx.py usr/lib/python3.15/dist-packages/cctbx/eltbx/development/itvc_cross_validation.py usr/lib/python3.15/dist-packages/cctbx/eltbx/development/itvc_fits.py usr/lib/python3.15/dist-packages/cctbx/eltbx/development/itvc_kissel.py usr/lib/python3.15/dist-packages/cctbx/eltbx/development/itvc_section61_io.py usr/lib/python3.15/dist-packages/cctbx/eltbx/development/kissel_fits.py usr/lib/python3.15/dist-packages/cctbx/eltbx/development/kissel_io.py usr/lib/python3.15/dist-packages/cctbx/eltbx/development/rez_rez_grant.py usr/lib/python3.15/dist-packages/cctbx/eltbx/xray_scattering/ usr/lib/python3.15/dist-packages/cctbx/eltbx/xray_scattering/__init__.py usr/lib/python3.15/dist-packages/cctbx/examples/ usr/lib/python3.15/dist-packages/cctbx/examples/__init__.py usr/lib/python3.15/dist-packages/cctbx/examples/adp_symmetry_constraints.py usr/lib/python3.15/dist-packages/cctbx/examples/all_axes.py usr/lib/python3.15/dist-packages/cctbx/examples/analyze_adp.py usr/lib/python3.15/dist-packages/cctbx/examples/ccp4_map.py usr/lib/python3.15/dist-packages/cctbx/examples/change_hand_p31.py usr/lib/python3.15/dist-packages/cctbx/examples/convert_ccp4_symop_lib.py usr/lib/python3.15/dist-packages/cctbx/examples/cr2o3_consistency_checks.py usr/lib/python3.15/dist-packages/cctbx/examples/cr2o3_primitive_cell.py usr/lib/python3.15/dist-packages/cctbx/examples/exp_i_alpha_derivatives.py usr/lib/python3.15/dist-packages/cctbx/examples/f_model_example.py usr/lib/python3.15/dist-packages/cctbx/examples/fft_map_electron_density_around_atom.py usr/lib/python3.15/dist-packages/cctbx/examples/find_distances_using_cpp_objects.py usr/lib/python3.15/dist-packages/cctbx/examples/find_sys_abs_equiv_space_groups.py usr/lib/python3.15/dist-packages/cctbx/examples/g_exp_i_alpha_derivatives.py usr/lib/python3.15/dist-packages/cctbx/examples/g_exp_i_partial_derivatives.py usr/lib/python3.15/dist-packages/cctbx/examples/getting_started.py usr/lib/python3.15/dist-packages/cctbx/examples/hirshfeld_test.py usr/lib/python3.15/dist-packages/cctbx/examples/le_page_1982_vs_lebedev_2005.py usr/lib/python3.15/dist-packages/cctbx/examples/lebedev_2005_perturbation.py usr/lib/python3.15/dist-packages/cctbx/examples/list_non_principal_continuous_shifts.py usr/lib/python3.15/dist-packages/cctbx/examples/location_part.py usr/lib/python3.15/dist-packages/cctbx/examples/map_skewness.py usr/lib/python3.15/dist-packages/cctbx/examples/maximum_subgroups.py usr/lib/python3.15/dist-packages/cctbx/examples/miller_common_sets.py usr/lib/python3.15/dist-packages/cctbx/examples/miller_transform.py usr/lib/python3.15/dist-packages/cctbx/examples/neutron_structure_factors.py usr/lib/python3.15/dist-packages/cctbx/examples/phase_o_phrenia.py usr/lib/python3.15/dist-packages/cctbx/examples/quartz_structure.py usr/lib/python3.15/dist-packages/cctbx/examples/random_f_calc.py usr/lib/python3.15/dist-packages/cctbx/examples/random_puckers.py usr/lib/python3.15/dist-packages/cctbx/examples/reduced_cell_two_folds.py usr/lib/python3.15/dist-packages/cctbx/examples/site_symmetry_constraints.py usr/lib/python3.15/dist-packages/cctbx/examples/site_symmetry_table.py usr/lib/python3.15/dist-packages/cctbx/examples/space_group_matrices.py usr/lib/python3.15/dist-packages/cctbx/examples/space_subgroups.py usr/lib/python3.15/dist-packages/cctbx/examples/steve_collins.py usr/lib/python3.15/dist-packages/cctbx/examples/structure_factor_derivatives.py usr/lib/python3.15/dist-packages/cctbx/examples/structure_factor_derivatives_2.py usr/lib/python3.15/dist-packages/cctbx/examples/structure_factor_derivatives_3.py usr/lib/python3.15/dist-packages/cctbx/examples/structure_factor_derivatives_4.py usr/lib/python3.15/dist-packages/cctbx/examples/sub_group_graph.py usr/lib/python3.15/dist-packages/cctbx/examples/symops_530.py usr/lib/python3.15/dist-packages/cctbx/examples/trigonal_r_vs_tetragonal_i.py usr/lib/python3.15/dist-packages/cctbx/examples/tst_exp_i_alpha_derivatives.py usr/lib/python3.15/dist-packages/cctbx/examples/tst_g_exp_i_alpha_derivatives.py usr/lib/python3.15/dist-packages/cctbx/examples/tst_phase_o_phrenia.py usr/lib/python3.15/dist-packages/cctbx/examples/tst_space_subgroups.py usr/lib/python3.15/dist-packages/cctbx/examples/tst_structure_factor_derivatives.py usr/lib/python3.15/dist-packages/cctbx/examples/tst_structure_factor_derivatives_2.py usr/lib/python3.15/dist-packages/cctbx/examples/tst_structure_factor_derivatives_3.py usr/lib/python3.15/dist-packages/cctbx/examples/tst_structure_factor_derivatives_4.py usr/lib/python3.15/dist-packages/cctbx/examples/unit_cell_minimizers.py usr/lib/python3.15/dist-packages/cctbx/examples/unit_cell_refinement.py usr/lib/python3.15/dist-packages/cctbx/examples/view_fft_map.py usr/lib/python3.15/dist-packages/cctbx/examples/merging/ usr/lib/python3.15/dist-packages/cctbx/examples/merging/__init__.py usr/lib/python3.15/dist-packages/cctbx/examples/merging/data_subset.py usr/lib/python3.15/dist-packages/cctbx/examples/merging/data_utilities.py usr/lib/python3.15/dist-packages/cctbx/examples/merging/show_results.py usr/lib/python3.15/dist-packages/cctbx/examples/merging/sigma_correction.py usr/lib/python3.15/dist-packages/cctbx/examples/merging/task4.py usr/lib/python3.15/dist-packages/cctbx/examples/merging/test1.py usr/lib/python3.15/dist-packages/cctbx/examples/merging/test_cc_half.py usr/lib/python3.15/dist-packages/cctbx/examples/merging/test_levenberg_sparse.py usr/lib/python3.15/dist-packages/cctbx/examples/merging/tst_permutations.py usr/lib/python3.15/dist-packages/cctbx/examples/merging/samosa/ usr/lib/python3.15/dist-packages/cctbx/examples/merging/samosa/__init__.py usr/lib/python3.15/dist-packages/cctbx/examples/merging/samosa/join.py usr/lib/python3.15/dist-packages/cctbx/examples/merging/samosa/per_lattice_postrefinement.py usr/lib/python3.15/dist-packages/cctbx/examples/merging/samosa/scale.py usr/lib/python3.15/dist-packages/cctbx/examples/structure_factor_calculus/ usr/lib/python3.15/dist-packages/cctbx/examples/structure_factor_calculus/__init__.py usr/lib/python3.15/dist-packages/cctbx/examples/structure_factor_calculus/site_derivatives.py usr/lib/python3.15/dist-packages/cctbx/examples/structure_factor_calculus/sites_derivatives.py usr/lib/python3.15/dist-packages/cctbx/examples/structure_factor_calculus/sites_least_squares_derivatives.py usr/lib/python3.15/dist-packages/cctbx/examples/structure_factor_calculus/u_star_derivatives.py usr/lib/python3.15/dist-packages/cctbx/geometry/ usr/lib/python3.15/dist-packages/cctbx/geometry/__init__.py usr/lib/python3.15/dist-packages/cctbx/geometry_restraints/ usr/lib/python3.15/dist-packages/cctbx/geometry_restraints/__init__.py usr/lib/python3.15/dist-packages/cctbx/geometry_restraints/auto_linking_types.py usr/lib/python3.15/dist-packages/cctbx/geometry_restraints/base_geometry.py usr/lib/python3.15/dist-packages/cctbx/geometry_restraints/distance_least_squares.py usr/lib/python3.15/dist-packages/cctbx/geometry_restraints/energies.py usr/lib/python3.15/dist-packages/cctbx/geometry_restraints/flags.py usr/lib/python3.15/dist-packages/cctbx/geometry_restraints/lbfgs.py usr/lib/python3.15/dist-packages/cctbx/geometry_restraints/linking_class.py usr/lib/python3.15/dist-packages/cctbx/geometry_restraints/manager.py usr/lib/python3.15/dist-packages/cctbx/geometry_restraints/process_nonbonded_proxies.py usr/lib/python3.15/dist-packages/cctbx/geometry_restraints/standard_cif_links.py usr/lib/python3.15/dist-packages/cctbx/geometry_restraints/tst_angle_derivs.py usr/lib/python3.15/dist-packages/cctbx/geometry_restraints/tst_ext.py usr/lib/python3.15/dist-packages/cctbx/geometry_restraints/tst_motif.py usr/lib/python3.15/dist-packages/cctbx/geometry_restraints/tst_process_nonbonded_proxies.py usr/lib/python3.15/dist-packages/cctbx/geometry_restraints/tst_proxy_registry.py usr/lib/python3.15/dist-packages/cctbx/macro_mol/ usr/lib/python3.15/dist-packages/cctbx/macro_mol/__init__.py usr/lib/python3.15/dist-packages/cctbx/macro_mol/rotation_parameters.py usr/lib/python3.15/dist-packages/cctbx/maptbx/ usr/lib/python3.15/dist-packages/cctbx/maptbx/__init__.py usr/lib/python3.15/dist-packages/cctbx/maptbx/auto_sharpen.py usr/lib/python3.15/dist-packages/cctbx/maptbx/box.py usr/lib/python3.15/dist-packages/cctbx/maptbx/fsc_curve.py usr/lib/python3.15/dist-packages/cctbx/maptbx/map_symmetry.py usr/lib/python3.15/dist-packages/cctbx/maptbx/mask.py usr/lib/python3.15/dist-packages/cctbx/maptbx/mem.py usr/lib/python3.15/dist-packages/cctbx/maptbx/minimization.py usr/lib/python3.15/dist-packages/cctbx/maptbx/prepare_map_for_docking.py usr/lib/python3.15/dist-packages/cctbx/maptbx/prepare_map_for_refinement.py usr/lib/python3.15/dist-packages/cctbx/maptbx/qscore.py usr/lib/python3.15/dist-packages/cctbx/maptbx/real_space_refinement_simple.py usr/lib/python3.15/dist-packages/cctbx/maptbx/refine_scales_errors.py usr/lib/python3.15/dist-packages/cctbx/maptbx/refine_sharpening.py usr/lib/python3.15/dist-packages/cctbx/maptbx/resolution_from_map_and_model.py usr/lib/python3.15/dist-packages/cctbx/maptbx/segment_and_split_map.py usr/lib/python3.15/dist-packages/cctbx/maptbx/servalcat_difference_map.py usr/lib/python3.15/dist-packages/cctbx/maptbx/tst_MapPeakLocator.py usr/lib/python3.15/dist-packages/cctbx/maptbx/tst_asymmetric_map.py usr/lib/python3.15/dist-packages/cctbx/maptbx/tst_atom_curves.py usr/lib/python3.15/dist-packages/cctbx/maptbx/tst_atom_radius_as_central_peak_width.py usr/lib/python3.15/dist-packages/cctbx/maptbx/tst_bcr.py usr/lib/python3.15/dist-packages/cctbx/maptbx/tst_ccp.py usr/lib/python3.15/dist-packages/cctbx/maptbx/tst_get_percentile_cutoffs.py usr/lib/python3.15/dist-packages/cctbx/maptbx/tst_interpolation.py usr/lib/python3.15/dist-packages/cctbx/maptbx/tst_interpolation_2.py usr/lib/python3.15/dist-packages/cctbx/maptbx/tst_loft.py usr/lib/python3.15/dist-packages/cctbx/maptbx/tst_map_peak_3d_as_2d.py usr/lib/python3.15/dist-packages/cctbx/maptbx/tst_mask.py usr/lib/python3.15/dist-packages/cctbx/maptbx/tst_peak_volume_estimate.py usr/lib/python3.15/dist-packages/cctbx/maptbx/tst_qscore.py usr/lib/python3.15/dist-packages/cctbx/maptbx/tst_real_space_refinement_simple.py usr/lib/python3.15/dist-packages/cctbx/maptbx/tst_resolution_from_map_and_model.py usr/lib/python3.15/dist-packages/cctbx/maptbx/tst_target_and_gradients.py usr/lib/python3.15/dist-packages/cctbx/maptbx/bcr/ usr/lib/python3.15/dist-packages/cctbx/maptbx/bcr/__init__.py usr/lib/python3.15/dist-packages/cctbx/maptbx/bcr/bcr.py usr/lib/python3.15/dist-packages/cctbx/maptbx/bcr/compute_tables.py usr/lib/python3.15/dist-packages/cctbx/maptbx/bcr/qmap.py usr/lib/python3.15/dist-packages/cctbx/maptbx/bcr/tst_adp_refine.py usr/lib/python3.15/dist-packages/cctbx/maptbx/bcr/tst_example.py usr/lib/python3.15/dist-packages/cctbx/maptbx/bcr/tst_qmap_02.py usr/lib/python3.15/dist-packages/cctbx/maptbx/bcr/tst_table.py usr/lib/python3.15/dist-packages/cctbx/maptbx/bcr/tst_two_atoms.py usr/lib/python3.15/dist-packages/cctbx/maptbx/bcr/tst_vrm.py usr/lib/python3.15/dist-packages/cctbx/maptbx/bcr/tst_vrm2.py usr/lib/python3.15/dist-packages/cctbx/masks/ usr/lib/python3.15/dist-packages/cctbx/masks/__init__.py usr/lib/python3.15/dist-packages/cctbx/merging/ usr/lib/python3.15/dist-packages/cctbx/merging/__init__.py usr/lib/python3.15/dist-packages/cctbx/merging/brehm_diederichs.py usr/lib/python3.15/dist-packages/cctbx/miller/ usr/lib/python3.15/dist-packages/cctbx/miller/__init__.py usr/lib/python3.15/dist-packages/cctbx/miller/display.py usr/lib/python3.15/dist-packages/cctbx/miller/reindexing.py usr/lib/python3.15/dist-packages/cctbx/miller/tst_map_to_asu_isym.py usr/lib/python3.15/dist-packages/cctbx/miller/tst_reindexing.py usr/lib/python3.15/dist-packages/cctbx/neutron/ usr/lib/python3.15/dist-packages/cctbx/neutron/__init__.py usr/lib/python3.15/dist-packages/cctbx/omz/ usr/lib/python3.15/dist-packages/cctbx/omz/__init__.py usr/lib/python3.15/dist-packages/cctbx/omz/bfgs.py usr/lib/python3.15/dist-packages/cctbx/omz/cif_refine.py usr/lib/python3.15/dist-packages/cctbx/omz/cod_refine.py usr/lib/python3.15/dist-packages/cctbx/omz/cod_select_and_pickle.py usr/lib/python3.15/dist-packages/cctbx/omz/dev.py usr/lib/python3.15/dist-packages/cctbx/omz/eval_iso_vs_refined.py usr/lib/python3.15/dist-packages/cctbx/omz/pdb_dev.py usr/lib/python3.15/dist-packages/cctbx/omz/tardy_adaptor.py usr/lib/python3.15/dist-packages/cctbx/omz/tst_bfgs.py usr/lib/python3.15/dist-packages/cctbx/omz/tst_dev.py usr/lib/python3.15/dist-packages/cctbx/regression/ usr/lib/python3.15/dist-packages/cctbx/regression/__init__.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_adp_aniso_restraints.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_adp_constraints.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_adp_constraints_cartesian.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_amplitude_normalisation.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_change_basis.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_connectivity.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_connectivity_allsym.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_coordination_sequences.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_create_models_or_maps.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_crystal.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_crystal_asu_clusters.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_crystal_close_packing.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_diffuse.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_direct_scaling.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_direct_space_asu.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_emma.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_expand_to_p1.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_f_model.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_fast_nv1995.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_fcalc_fft_stability.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_find_best_cell.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_fourier_transform_real_part_at_x.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_french_wilson.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_geometry_restraints.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_geometry_restraints_2.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_geometry_restraints_lbfgs.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_grm_modifications.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_grm_modifications_rm.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_grm_pickling.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_grouped_data.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_krivy_gruber.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_loc_res.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_map_is_periodic.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_map_weights_for_symmetry_summation.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_maptbx_box.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_maptbx_mask.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_maptbx_structure_factors.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_match_bijvoet_mates.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_math_module.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_mem.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_mem_2.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_miller.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_miller_data_manipulation.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_miller_double_step_filtration.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_miller_fft_map.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_miller_lookup_utils.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_miller_merge_equivalents.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_miller_statistics.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_niggli_reduction_cpp.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_pair_asu_table.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_pointgroup_tools.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_prepare_map_for_docking.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_r_free_utils.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_reciprocal_space_asu.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_refine_xray_curvs.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_reflection_statistics.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_sampled_model_density.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_sf_low_res_accuracy.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_sgtbx.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_sgtbx_denominators.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_sgtbx_harker.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_sgtbx_lattice_symmetry.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_sgtbx_site_constraints.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_sgtbx_special_op_simplifier.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_sgtbx_subgroups.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_sgtbx_tidy_pickling.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_show_cosets.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_sphericity.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_statistics_graphs.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_triplet_generator.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_twin_target.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_wavelength_units.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_web_change_basis.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_weighting_schemes.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_wilson_plot.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_xray.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_xray_derivatives.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_xray_fast_gradients.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_xray_minimization.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_xray_minimization_failure.py usr/lib/python3.15/dist-packages/cctbx/regression/tst_xray_target_functors.py usr/lib/python3.15/dist-packages/cctbx/sgtbx/ usr/lib/python3.15/dist-packages/cctbx/sgtbx/__init__.py usr/lib/python3.15/dist-packages/cctbx/sgtbx/bravais_types.py usr/lib/python3.15/dist-packages/cctbx/sgtbx/cosets.py usr/lib/python3.15/dist-packages/cctbx/sgtbx/harker.py usr/lib/python3.15/dist-packages/cctbx/sgtbx/lattice_symmetry.py usr/lib/python3.15/dist-packages/cctbx/sgtbx/literal_description.py usr/lib/python3.15/dist-packages/cctbx/sgtbx/plane_groups.py usr/lib/python3.15/dist-packages/cctbx/sgtbx/pointgroup_tools.py usr/lib/python3.15/dist-packages/cctbx/sgtbx/rational_matrices_point_groups.py usr/lib/python3.15/dist-packages/cctbx/sgtbx/reticular_pg_tools.py usr/lib/python3.15/dist-packages/cctbx/sgtbx/reticular_twin_laws.py usr/lib/python3.15/dist-packages/cctbx/sgtbx/show_cosets.py usr/lib/python3.15/dist-packages/cctbx/sgtbx/sub_lattice_tools.py usr/lib/python3.15/dist-packages/cctbx/sgtbx/subgroups.py usr/lib/python3.15/dist-packages/cctbx/sgtbx/symbol_confidence.py usr/lib/python3.15/dist-packages/cctbx/sgtbx/sys_abs_equiv.py usr/lib/python3.15/dist-packages/cctbx/sgtbx/direct_space_asu/ usr/lib/python3.15/dist-packages/cctbx/sgtbx/direct_space_asu/__init__.py usr/lib/python3.15/dist-packages/cctbx/sgtbx/direct_space_asu/check_redundancies.py usr/lib/python3.15/dist-packages/cctbx/sgtbx/direct_space_asu/cut_plane.py usr/lib/python3.15/dist-packages/cctbx/sgtbx/direct_space_asu/facet_analysis.py usr/lib/python3.15/dist-packages/cctbx/sgtbx/direct_space_asu/plane_group_reference_table.py usr/lib/python3.15/dist-packages/cctbx/sgtbx/direct_space_asu/reference_table.py usr/lib/python3.15/dist-packages/cctbx/sgtbx/direct_space_asu/short_cuts.py usr/lib/python3.15/dist-packages/cctbx/sgtbx/direct_space_asu/proto/ usr/lib/python3.15/dist-packages/cctbx/sgtbx/direct_space_asu/proto/__init__.py usr/lib/python3.15/dist-packages/cctbx/sgtbx/direct_space_asu/proto/generate_cpp_asu_table.py usr/lib/python3.15/dist-packages/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py usr/lib/python3.15/dist-packages/cctbx/source_generators/ usr/lib/python3.15/dist-packages/cctbx/source_generators/__init__.py usr/lib/python3.15/dist-packages/cctbx/source_generators/flex_fwd_h.py usr/lib/python3.15/dist-packages/cctbx/source_generators/eltbx/ usr/lib/python3.15/dist-packages/cctbx/source_generators/eltbx/__init__.py usr/lib/python3.15/dist-packages/cctbx/source_generators/eltbx/generate_henke_cpp.py usr/lib/python3.15/dist-packages/cctbx/source_generators/eltbx/generate_sasaki_cpp.py usr/lib/python3.15/dist-packages/cctbx/uctbx/ usr/lib/python3.15/dist-packages/cctbx/uctbx/__init__.py usr/lib/python3.15/dist-packages/cctbx/uctbx/gruber_1973.py usr/lib/python3.15/dist-packages/cctbx/uctbx/gruber_1973_table_1.py usr/lib/python3.15/dist-packages/cctbx/uctbx/krivy_gruber_1976.py usr/lib/python3.15/dist-packages/cctbx/uctbx/reduction_base.py usr/lib/python3.15/dist-packages/cctbx/uctbx/determine_unit_cell/ usr/lib/python3.15/dist-packages/cctbx/uctbx/determine_unit_cell/__init__.py usr/lib/python3.15/dist-packages/cctbx/web/ usr/lib/python3.15/dist-packages/cctbx/web/__init__.py usr/lib/python3.15/dist-packages/cctbx/web/all_axes.py usr/lib/python3.15/dist-packages/cctbx/web/browse_settings.py usr/lib/python3.15/dist-packages/cctbx/web/cgi_utils.py usr/lib/python3.15/dist-packages/cctbx/web/change_basis.py usr/lib/python3.15/dist-packages/cctbx/web/change_hand.py usr/lib/python3.15/dist-packages/cctbx/web/change_setting.py usr/lib/python3.15/dist-packages/cctbx/web/dispatcher.py usr/lib/python3.15/dist-packages/cctbx/web/emma.py usr/lib/python3.15/dist-packages/cctbx/web/explore_symmetry.py usr/lib/python3.15/dist-packages/cctbx/web/frac_cart.py usr/lib/python3.15/dist-packages/cctbx/web/io_utils.py usr/lib/python3.15/dist-packages/cctbx/web/iotbx_cif_validate.py usr/lib/python3.15/dist-packages/cctbx/web/lattice_symmetry.py usr/lib/python3.15/dist-packages/cctbx/web/libtbx_help.py usr/lib/python3.15/dist-packages/cctbx/web/multiple_cell.py usr/lib/python3.15/dist-packages/cctbx/web/phase_o_phrenia.py usr/lib/python3.15/dist-packages/cctbx/web/replay.py usr/lib/python3.15/dist-packages/cctbx/web/shelx.py usr/lib/python3.15/dist-packages/cctbx/web/structure_factors.py usr/lib/python3.15/dist-packages/cctbx/web/structure_factors_pdb.py usr/lib/python3.15/dist-packages/cctbx/web/wyckoff.py usr/lib/python3.15/dist-packages/cctbx/web/asu_gallery/ usr/lib/python3.15/dist-packages/cctbx/web/asu_gallery/__init__.py usr/lib/python3.15/dist-packages/cctbx/web/asu_gallery/guide_to_notation.py usr/lib/python3.15/dist-packages/cctbx/web/asu_gallery/jv_asu.py usr/lib/python3.15/dist-packages/cctbx/web/asu_gallery/jv_index.py usr/lib/python3.15/dist-packages/cctbx/web/asu_gallery/jvx.py usr/lib/python3.15/dist-packages/cctbx/web/asu_gallery/web_links.py usr/lib/python3.15/dist-packages/cctbx/xray/ usr/lib/python3.15/dist-packages/cctbx/xray/__init__.py usr/lib/python3.15/dist-packages/cctbx/xray/ext.py usr/lib/python3.15/dist-packages/cctbx/xray/minimization.py usr/lib/python3.15/dist-packages/cctbx/xray/observation_types.py usr/lib/python3.15/dist-packages/cctbx/xray/scatterer.py usr/lib/python3.15/dist-packages/cctbx/xray/structure.py usr/lib/python3.15/dist-packages/cctbx/xray/target_functors.py usr/lib/python3.15/dist-packages/cctbx/xray/weighting_schemes.py usr/lib/python3.15/dist-packages/cctbx/xray/observations/ usr/lib/python3.15/dist-packages/cctbx/xray/observations/__init__.py usr/lib/python3.15/dist-packages/cctbx/xray/observations/tst_observations.py usr/lib/python3.15/dist-packages/cctbx/xray/structure_factors/ usr/lib/python3.15/dist-packages/cctbx/xray/structure_factors/__init__.py usr/lib/python3.15/dist-packages/cctbx/xray/structure_factors/algorithm.py usr/lib/python3.15/dist-packages/cctbx/xray/structure_factors/from_scatterers.py usr/lib/python3.15/dist-packages/cctbx/xray/structure_factors/from_scatterers_direct.py usr/lib/python3.15/dist-packages/cctbx/xray/structure_factors/from_scatterers_direct_parallel.py usr/lib/python3.15/dist-packages/cctbx/xray/structure_factors/from_scatterers_fft.py usr/lib/python3.15/dist-packages/cctbx/xray/structure_factors/global_counters.py usr/lib/python3.15/dist-packages/cctbx/xray/structure_factors/gradient_flags.py usr/lib/python3.15/dist-packages/cctbx/xray/structure_factors/gradients.py usr/lib/python3.15/dist-packages/cctbx/xray/structure_factors/gradients_base.py usr/lib/python3.15/dist-packages/cctbx/xray/structure_factors/gradients_direct.py usr/lib/python3.15/dist-packages/cctbx/xray/structure_factors/gradients_fft.py usr/lib/python3.15/dist-packages/cctbx/xray/structure_factors/manager.py usr/lib/python3.15/dist-packages/cctbx/xray/structure_factors/misc.py usr/lib/python3.15/dist-packages/cctbx/xray/targets/ usr/lib/python3.15/dist-packages/cctbx/xray/targets/__init__.py usr/lib/python3.15/dist-packages/cctbx/xray/targets/r1.py usr/lib/python3.15/dist-packages/cctbx/xray/targets/tst_r1.py usr/lib/python3.15/dist-packages/cctbx/xray/targets/tst_shelxl_wght_ls.py usr/lib/python3.15/dist-packages/cctbx_website/ usr/lib/python3.15/dist-packages/cctbx_website/__init__.py usr/lib/python3.15/dist-packages/cctbx_website/libtbx_refresh.py usr/lib/python3.15/dist-packages/cctbx_website/run_tests.py usr/lib/python3.15/dist-packages/cctbx_website/command_line/ usr/lib/python3.15/dist-packages/cctbx_website/command_line/__init__.py usr/lib/python3.15/dist-packages/cctbx_website/command_line/comment_to_docstring.py usr/lib/python3.15/dist-packages/cctbx_website/command_line/edit_for_boost.py usr/lib/python3.15/dist-packages/cctbx_website/command_line/edit_html.py usr/lib/python3.15/dist-packages/cctbx_website/command_line/extract_script_from_html_cctbx_doc.py usr/lib/python3.15/dist-packages/cctbx_website/command_line/run_pdoc_cctbx_api.py usr/lib/python3.15/dist-packages/cctbx_website/command_line/tst_comment_to_docstring.py usr/lib/python3.15/dist-packages/cctbx_website/regression/ usr/lib/python3.15/dist-packages/cctbx_website/regression/__init__.py usr/lib/python3.15/dist-packages/cctbx_website/regression/exercise.py usr/lib/python3.15/dist-packages/cctbx_website/regression/tst_10_doc_programming_tips_1.py usr/lib/python3.15/dist-packages/cctbx_website/regression/tst_11_script_1.py usr/lib/python3.15/dist-packages/cctbx_website/regression/tst_12_script_compare_ss.py usr/lib/python3.15/dist-packages/cctbx_website/regression/tst_13_script_ideal_ss.py usr/lib/python3.15/dist-packages/cctbx_website/regression/tst_14_script_lbfgs_no_curvature.py usr/lib/python3.15/dist-packages/cctbx_website/regression/tst_15_doc_models_hierarchy.py usr/lib/python3.15/dist-packages/cctbx_website/regression/tst_16_script_lbfgs_with_curvature.py usr/lib/python3.15/dist-packages/cctbx_website/regression/tst_17_script_rfactors.py usr/lib/python3.15/dist-packages/cctbx_website/regression/tst_18_doc_programming_tips_2.py usr/lib/python3.15/dist-packages/cctbx_website/regression/tst_19_doc_programming_tips_3.py usr/lib/python3.15/dist-packages/cctbx_website/regression/tst_1_template.py usr/lib/python3.15/dist-packages/cctbx_website/regression/tst_2_doc_hlo_intro.py usr/lib/python3.15/dist-packages/cctbx_website/regression/tst_3_doc_hlo_model_manager.py usr/lib/python3.15/dist-packages/cctbx_website/regression/tst_4_doc_hlo_data_manager.py usr/lib/python3.15/dist-packages/cctbx_website/regression/tst_5_doc_hlo_map_manager.py usr/lib/python3.15/dist-packages/cctbx_website/regression/tst_6_doc_hlo_model_map_manager.py usr/lib/python3.15/dist-packages/cctbx_website/regression/tst_7_doc_low_flex_advanced.py usr/lib/python3.15/dist-packages/cctbx_website/regression/tst_8_doc_maps_intro.py usr/lib/python3.15/dist-packages/cctbx_website/regression/tst_9_doc_maps_boxing.py usr/lib/python3.15/dist-packages/cctbx_website/regression/tst_py_from_html.py usr/lib/python3.15/dist-packages/cma_es/ usr/lib/python3.15/dist-packages/cma_es/__init__.py usr/lib/python3.15/dist-packages/cma_es/cma_es_interface.py usr/lib/python3.15/dist-packages/cma_es/run_tests.py usr/lib/python3.15/dist-packages/cma_es/tst_cma_es.py usr/lib/python3.15/dist-packages/cootbx/ usr/lib/python3.15/dist-packages/cootbx/__init__.py usr/lib/python3.15/dist-packages/cootbx/hydrogens_button.py usr/lib/python3.15/dist-packages/cootbx/interactive_edit.py usr/lib/python3.15/dist-packages/cootbx/ligand_checklist.py usr/lib/python3.15/dist-packages/cootbx/simple_zoom_list.py usr/lib/python3.15/dist-packages/cootbx/validation_lists.py usr/lib/python3.15/dist-packages/cootbx/view_refinement.py usr/lib/python3.15/dist-packages/cootbx/watch_file.py usr/lib/python3.15/dist-packages/cootbx/xmlrpc_server.py usr/lib/python3.15/dist-packages/dxtbx-3.30.0.dist-info/ usr/lib/python3.15/dist-packages/dxtbx-3.30.0.dist-info/METADATA usr/lib/python3.15/dist-packages/dxtbx-3.30.0.dist-info/RECORD usr/lib/python3.15/dist-packages/dxtbx-3.30.0.dist-info/WHEEL usr/lib/python3.15/dist-packages/dxtbx-3.30.0.dist-info/entry_points.txt usr/lib/python3.15/dist-packages/dxtbx-3.30.0.dist-info/licenses/ usr/lib/python3.15/dist-packages/dxtbx-3.30.0.dist-info/licenses/AUTHORS 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usr/lib/python3.15/dist-packages/iotbx/ccp4_map/tst.py usr/lib/python3.15/dist-packages/iotbx/cif/ usr/lib/python3.15/dist-packages/iotbx/cif/__init__.py usr/lib/python3.15/dist-packages/iotbx/cif/builders.py usr/lib/python3.15/dist-packages/iotbx/cif/citations.py usr/lib/python3.15/dist-packages/iotbx/cif/cod_tools.py usr/lib/python3.15/dist-packages/iotbx/cif/crystal_symmetry_from_cif.py usr/lib/python3.15/dist-packages/iotbx/cif/errors.py usr/lib/python3.15/dist-packages/iotbx/cif/geometry.py usr/lib/python3.15/dist-packages/iotbx/cif/model.py usr/lib/python3.15/dist-packages/iotbx/cif/restraint_file_merge.py usr/lib/python3.15/dist-packages/iotbx/cif/restraints.py usr/lib/python3.15/dist-packages/iotbx/cif/validation.py usr/lib/python3.15/dist-packages/iotbx/cns/ usr/lib/python3.15/dist-packages/iotbx/cns/__init__.py usr/lib/python3.15/dist-packages/iotbx/cns/crystal_symmetry_from_inp.py usr/lib/python3.15/dist-packages/iotbx/cns/crystal_symmetry_from_sdb.py usr/lib/python3.15/dist-packages/iotbx/cns/crystal_symmetry_utils.py usr/lib/python3.15/dist-packages/iotbx/cns/index_fobs_sigma_reader.py usr/lib/python3.15/dist-packages/iotbx/cns/miller_array.py usr/lib/python3.15/dist-packages/iotbx/cns/pdb_remarks.py usr/lib/python3.15/dist-packages/iotbx/cns/reflection_reader.py usr/lib/python3.15/dist-packages/iotbx/cns/sdb_reader.py usr/lib/python3.15/dist-packages/iotbx/cns/sdb_writer.py usr/lib/python3.15/dist-packages/iotbx/cns/space_group_symbols.py usr/lib/python3.15/dist-packages/iotbx/cns/tst_cns.py usr/lib/python3.15/dist-packages/iotbx/cns/xray_structure.py usr/lib/python3.15/dist-packages/iotbx/command_line/ usr/lib/python3.15/dist-packages/iotbx/command_line/__init__.py usr/lib/python3.15/dist-packages/iotbx/command_line/biomt_reconstruction.py usr/lib/python3.15/dist-packages/iotbx/command_line/blast_pdb.py usr/lib/python3.15/dist-packages/iotbx/command_line/build_phil_cache.py usr/lib/python3.15/dist-packages/iotbx/command_line/cbf_read.py usr/lib/python3.15/dist-packages/iotbx/command_line/cif.as_miller_arrays.py usr/lib/python3.15/dist-packages/iotbx/command_line/cif.as_xray_structure.py usr/lib/python3.15/dist-packages/iotbx/command_line/cif.validate.py usr/lib/python3.15/dist-packages/iotbx/command_line/cif_as_pdb.py usr/lib/python3.15/dist-packages/iotbx/command_line/cns.reflection_reader.py usr/lib/python3.15/dist-packages/iotbx/command_line/cns.sdb_reader.py usr/lib/python3.15/dist-packages/iotbx/command_line/cns.transfer_crystal_symmetry.py usr/lib/python3.15/dist-packages/iotbx/command_line/cns_as_mtz.py usr/lib/python3.15/dist-packages/iotbx/command_line/crystal_symmetry_from_any.py usr/lib/python3.15/dist-packages/iotbx/command_line/csv_as_mtz.py usr/lib/python3.15/dist-packages/iotbx/command_line/dano_as_amplitudes.py usr/lib/python3.15/dist-packages/iotbx/command_line/detector_image_as_png.py usr/lib/python3.15/dist-packages/iotbx/command_line/distance_least_squares.py usr/lib/python3.15/dist-packages/iotbx/command_line/dtrek.to_cns.py usr/lib/python3.15/dist-packages/iotbx/command_line/effective_resolution.py usr/lib/python3.15/dist-packages/iotbx/command_line/emma.py usr/lib/python3.15/dist-packages/iotbx/command_line/explore_metric_symmetry.py usr/lib/python3.15/dist-packages/iotbx/command_line/export_scalepack_unmerged.py usr/lib/python3.15/dist-packages/iotbx/command_line/file_reader.py usr/lib/python3.15/dist-packages/iotbx/command_line/flip_symmetric_amino_acids.py usr/lib/python3.15/dist-packages/iotbx/command_line/french_wilson.py usr/lib/python3.15/dist-packages/iotbx/command_line/get_pubmed_citation.py usr/lib/python3.15/dist-packages/iotbx/command_line/lattice_symmetry.py usr/lib/python3.15/dist-packages/iotbx/command_line/merging_statistics.py usr/lib/python3.15/dist-packages/iotbx/command_line/mtrix_reconstruction.py usr/lib/python3.15/dist-packages/iotbx/command_line/mtz.dump.py usr/lib/python3.15/dist-packages/iotbx/command_line/mtz_as_cif.py usr/lib/python3.15/dist-packages/iotbx/command_line/patterson_map.py usr/lib/python3.15/dist-packages/iotbx/command_line/pdb.as_xray_structure.py usr/lib/python3.15/dist-packages/iotbx/command_line/pdb.b_factor_stats.py usr/lib/python3.15/dist-packages/iotbx/command_line/pdb.box_around_molecule.py usr/lib/python3.15/dist-packages/iotbx/command_line/pdb.hierarchy.py usr/lib/python3.15/dist-packages/iotbx/command_line/pdb.insert_scale_records.py usr/lib/python3.15/dist-packages/iotbx/command_line/pdb.join_fragment_files.py usr/lib/python3.15/dist-packages/iotbx/command_line/pdb.link_as_geometry_restraints_edits.py usr/lib/python3.15/dist-packages/iotbx/command_line/pdb.print_sequence.py usr/lib/python3.15/dist-packages/iotbx/command_line/pdb.superpose_atoms_by_name.py usr/lib/python3.15/dist-packages/iotbx/command_line/pdb.superpose_centers_of_mass.py 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usr/lib/python3.15/dist-packages/iotbx/command_line/r_free_flags_as_cns.py usr/lib/python3.15/dist-packages/iotbx/command_line/r_free_flags_completion_simple.py usr/lib/python3.15/dist-packages/iotbx/command_line/reflection_file_converter.py usr/lib/python3.15/dist-packages/iotbx/command_line/reflection_file_editor.py usr/lib/python3.15/dist-packages/iotbx/command_line/reflection_file_reader.py usr/lib/python3.15/dist-packages/iotbx/command_line/reflection_statistics.py usr/lib/python3.15/dist-packages/iotbx/command_line/reindex.py usr/lib/python3.15/dist-packages/iotbx/command_line/shelx.as_cif.py usr/lib/python3.15/dist-packages/iotbx/command_line/shelx.as_xray_structure.py usr/lib/python3.15/dist-packages/iotbx/command_line/shelx.dump_as_python.py usr/lib/python3.15/dist-packages/iotbx/command_line/show_distances.py usr/lib/python3.15/dist-packages/iotbx/command_line/show_systematic_absences.py usr/lib/python3.15/dist-packages/iotbx/command_line/simple_map_coefficients.py 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usr/lib/python3.15/dist-packages/iotbx/data_manager/restraint.py usr/lib/python3.15/dist-packages/iotbx/data_manager/sequence.py usr/lib/python3.15/dist-packages/iotbx/data_manager/yaml.py usr/lib/python3.15/dist-packages/iotbx/detectors/ usr/lib/python3.15/dist-packages/iotbx/detectors/__init__.py usr/lib/python3.15/dist-packages/iotbx/detectors/active_area_filter.py usr/lib/python3.15/dist-packages/iotbx/detectors/adsc.py usr/lib/python3.15/dist-packages/iotbx/detectors/adsc_minicbf.py usr/lib/python3.15/dist-packages/iotbx/detectors/adsc_module.py usr/lib/python3.15/dist-packages/iotbx/detectors/beam_center_convention.py usr/lib/python3.15/dist-packages/iotbx/detectors/bruker.py usr/lib/python3.15/dist-packages/iotbx/detectors/cbf.py usr/lib/python3.15/dist-packages/iotbx/detectors/cspad_detector_formats.py usr/lib/python3.15/dist-packages/iotbx/detectors/detectorbase.py usr/lib/python3.15/dist-packages/iotbx/detectors/dtrek.py usr/lib/python3.15/dist-packages/iotbx/detectors/edf.py usr/lib/python3.15/dist-packages/iotbx/detectors/eiger.py usr/lib/python3.15/dist-packages/iotbx/detectors/eiger_minicbf.py usr/lib/python3.15/dist-packages/iotbx/detectors/generic_detector.py usr/lib/python3.15/dist-packages/iotbx/detectors/hamamatsu.py usr/lib/python3.15/dist-packages/iotbx/detectors/image_from_http_request.py usr/lib/python3.15/dist-packages/iotbx/detectors/macscience.py usr/lib/python3.15/dist-packages/iotbx/detectors/mar.py usr/lib/python3.15/dist-packages/iotbx/detectors/marIP.py usr/lib/python3.15/dist-packages/iotbx/detectors/noir.py usr/lib/python3.15/dist-packages/iotbx/detectors/npy.py usr/lib/python3.15/dist-packages/iotbx/detectors/pilatus_minicbf.py usr/lib/python3.15/dist-packages/iotbx/detectors/pilatus_slice.py usr/lib/python3.15/dist-packages/iotbx/detectors/raxis.py usr/lib/python3.15/dist-packages/iotbx/detectors/raxis_nonsquare.py usr/lib/python3.15/dist-packages/iotbx/detectors/raxisbase.py usr/lib/python3.15/dist-packages/iotbx/detectors/saturn.py usr/lib/python3.15/dist-packages/iotbx/detectors/test_mar.py usr/lib/python3.15/dist-packages/iotbx/detectors/test_raxis2.py usr/lib/python3.15/dist-packages/iotbx/detectors/tst_adsc.py usr/lib/python3.15/dist-packages/iotbx/detectors/tst_cbf_comp_read_meth.py usr/lib/python3.15/dist-packages/iotbx/detectors/tst_debug_write.py usr/lib/python3.15/dist-packages/iotbx/detectors/tst_detectors.py usr/lib/python3.15/dist-packages/iotbx/detectors/tst_py_cbf.py usr/lib/python3.15/dist-packages/iotbx/detectors/url_support.py usr/lib/python3.15/dist-packages/iotbx/detectors/context/ usr/lib/python3.15/dist-packages/iotbx/detectors/context/__init__.py usr/lib/python3.15/dist-packages/iotbx/detectors/context/camera_convention.py usr/lib/python3.15/dist-packages/iotbx/detectors/context/config_detector.py usr/lib/python3.15/dist-packages/iotbx/detectors/context/endstation.py usr/lib/python3.15/dist-packages/iotbx/detectors/context/endstation_max_iv_trial.py usr/lib/python3.15/dist-packages/iotbx/detectors/context/spot_xy_convention.py usr/lib/python3.15/dist-packages/iotbx/detectors/util/ usr/lib/python3.15/dist-packages/iotbx/detectors/util/__init__.py usr/lib/python3.15/dist-packages/iotbx/detectors/util/filters.py usr/lib/python3.15/dist-packages/iotbx/dsn6/ usr/lib/python3.15/dist-packages/iotbx/dsn6/__init__.py usr/lib/python3.15/dist-packages/iotbx/dsn6/tst.py usr/lib/python3.15/dist-packages/iotbx/dtrek/ usr/lib/python3.15/dist-packages/iotbx/dtrek/__init__.py usr/lib/python3.15/dist-packages/iotbx/dtrek/crystal_symmetry_from_ref.py usr/lib/python3.15/dist-packages/iotbx/dtrek/dtrek_symmetry_dict.py usr/lib/python3.15/dist-packages/iotbx/dtrek/reflnlist_reader.py usr/lib/python3.15/dist-packages/iotbx/examples/ usr/lib/python3.15/dist-packages/iotbx/examples/__init__.py usr/lib/python3.15/dist-packages/iotbx/examples/direct_methods_light.py usr/lib/python3.15/dist-packages/iotbx/examples/libtbx_phil_examples.py usr/lib/python3.15/dist-packages/iotbx/examples/mtz_convert_free_to_work.py usr/lib/python3.15/dist-packages/iotbx/examples/mtz_free_flipper.py usr/lib/python3.15/dist-packages/iotbx/examples/pdb_hierarchy.py usr/lib/python3.15/dist-packages/iotbx/examples/pdb_shake.py usr/lib/python3.15/dist-packages/iotbx/examples/pdb_split_chains.py usr/lib/python3.15/dist-packages/iotbx/examples/pdb_symmetry_copies.py usr/lib/python3.15/dist-packages/iotbx/examples/pdb_tardy_conf_sampling_simple.py usr/lib/python3.15/dist-packages/iotbx/examples/pdb_to_map_simple.py usr/lib/python3.15/dist-packages/iotbx/examples/pdbx_mmcif_tutorial.py usr/lib/python3.15/dist-packages/iotbx/examples/prepare_model_for_rsr.py usr/lib/python3.15/dist-packages/iotbx/examples/recalculate_phenix_refine_r_factors.py usr/lib/python3.15/dist-packages/iotbx/examples/shelx_latt_sym_to_space_group_symbol.py usr/lib/python3.15/dist-packages/iotbx/examples/tst_mtz_free_flipper.py usr/lib/python3.15/dist-packages/iotbx/examples/pdb_truncate_to_ala/ usr/lib/python3.15/dist-packages/iotbx/examples/pdb_truncate_to_ala/__init__.py usr/lib/python3.15/dist-packages/iotbx/examples/pdb_truncate_to_ala/tst.py usr/lib/python3.15/dist-packages/iotbx/examples/pdb_truncate_to_ala/v0_getting_started.py usr/lib/python3.15/dist-packages/iotbx/examples/pdb_truncate_to_ala/v1_loop_over_atoms.py usr/lib/python3.15/dist-packages/iotbx/examples/pdb_truncate_to_ala/v2_simple.py usr/lib/python3.15/dist-packages/iotbx/examples/pdb_truncate_to_ala/v3_better.py usr/lib/python3.15/dist-packages/iotbx/examples/pdb_truncate_to_ala/v4_with_bells_and_whistles.py usr/lib/python3.15/dist-packages/iotbx/file_io/ usr/lib/python3.15/dist-packages/iotbx/file_io/__init__.py usr/lib/python3.15/dist-packages/iotbx/file_io/_maps.py usr/lib/python3.15/dist-packages/iotbx/file_io/detection.py usr/lib/python3.15/dist-packages/iotbx/file_io/reader.py usr/lib/python3.15/dist-packages/iotbx/file_io/text_detection.py usr/lib/python3.15/dist-packages/iotbx/fullprof/ usr/lib/python3.15/dist-packages/iotbx/fullprof/__init__.py usr/lib/python3.15/dist-packages/iotbx/fullprof/read_pcr.py usr/lib/python3.15/dist-packages/iotbx/fullprof/write_pcr.py usr/lib/python3.15/dist-packages/iotbx/gui_tools/ usr/lib/python3.15/dist-packages/iotbx/gui_tools/__init__.py usr/lib/python3.15/dist-packages/iotbx/gui_tools/cif_conversions.py usr/lib/python3.15/dist-packages/iotbx/gui_tools/import_data_and_flags.py usr/lib/python3.15/dist-packages/iotbx/gui_tools/models.py usr/lib/python3.15/dist-packages/iotbx/gui_tools/reflections.py usr/lib/python3.15/dist-packages/iotbx/gui_tools/tst.py usr/lib/python3.15/dist-packages/iotbx/kriber/ usr/lib/python3.15/dist-packages/iotbx/kriber/__init__.py usr/lib/python3.15/dist-packages/iotbx/kriber/strudat.py usr/lib/python3.15/dist-packages/iotbx/kriber/tst_strudat.py usr/lib/python3.15/dist-packages/iotbx/mrcfile/ usr/lib/python3.15/dist-packages/iotbx/mrcfile/__init__.py usr/lib/python3.15/dist-packages/iotbx/mrcfile/crystal_symmetry_from_ccp4_map.py usr/lib/python3.15/dist-packages/iotbx/mtz/ usr/lib/python3.15/dist-packages/iotbx/mtz/__init__.py usr/lib/python3.15/dist-packages/iotbx/mtz/crystal_symmetry_from_mtz.py usr/lib/python3.15/dist-packages/iotbx/mtz/extract_from_symmetry_lib.py usr/lib/python3.15/dist-packages/iotbx/mtz/tst.py usr/lib/python3.15/dist-packages/iotbx/mtz/tst_dano.py usr/lib/python3.15/dist-packages/iotbx/mtz/tst_ext.py usr/lib/python3.15/dist-packages/iotbx/mtz/tst_extract_from_symmetry_lib.py usr/lib/python3.15/dist-packages/iotbx/mtz/tst_miller_dict.py usr/lib/python3.15/dist-packages/iotbx/mtz/tst_unmerged.py usr/lib/python3.15/dist-packages/iotbx/ncs/ usr/lib/python3.15/dist-packages/iotbx/ncs/__init__.py usr/lib/python3.15/dist-packages/iotbx/pdb/ usr/lib/python3.15/dist-packages/iotbx/pdb/__init__.py usr/lib/python3.15/dist-packages/iotbx/pdb/aa_utils.py usr/lib/python3.15/dist-packages/iotbx/pdb/amino_acid_codes.py usr/lib/python3.15/dist-packages/iotbx/pdb/atom_name_interpretation.py usr/lib/python3.15/dist-packages/iotbx/pdb/atom_selection.py usr/lib/python3.15/dist-packages/iotbx/pdb/cryst1_interpretation.py usr/lib/python3.15/dist-packages/iotbx/pdb/crystal_symmetry_from_pdb.py usr/lib/python3.15/dist-packages/iotbx/pdb/download.py usr/lib/python3.15/dist-packages/iotbx/pdb/experiment_type.py usr/lib/python3.15/dist-packages/iotbx/pdb/extract_rfactors_resolutions_sigma.py usr/lib/python3.15/dist-packages/iotbx/pdb/fetch.py usr/lib/python3.15/dist-packages/iotbx/pdb/forward_compatible_pdb_cif_conversion.py usr/lib/python3.15/dist-packages/iotbx/pdb/hierarchy.py usr/lib/python3.15/dist-packages/iotbx/pdb/hybrid_36.py usr/lib/python3.15/dist-packages/iotbx/pdb/misc_records_output.py usr/lib/python3.15/dist-packages/iotbx/pdb/mmcif.py usr/lib/python3.15/dist-packages/iotbx/pdb/modified_aa_names.py usr/lib/python3.15/dist-packages/iotbx/pdb/modified_rna_dna_names.py usr/lib/python3.15/dist-packages/iotbx/pdb/nucleic_acid_codes.py usr/lib/python3.15/dist-packages/iotbx/pdb/pdb_v3_cif_conversion.py usr/lib/python3.15/dist-packages/iotbx/pdb/pdbe.py usr/lib/python3.15/dist-packages/iotbx/pdb/rcsb.py usr/lib/python3.15/dist-packages/iotbx/pdb/records.py usr/lib/python3.15/dist-packages/iotbx/pdb/remark_290_interpretation.py usr/lib/python3.15/dist-packages/iotbx/pdb/remark_2_interpretation.py usr/lib/python3.15/dist-packages/iotbx/pdb/remark_3_interpretation.py usr/lib/python3.15/dist-packages/iotbx/pdb/rna_dna_detection.py usr/lib/python3.15/dist-packages/iotbx/pdb/secondary_structure.py usr/lib/python3.15/dist-packages/iotbx/pdb/tst_atom_name_interpretation.py usr/lib/python3.15/dist-packages/iotbx/pdb/tst_atom_selection.py usr/lib/python3.15/dist-packages/iotbx/pdb/tst_atom_selection_string.py usr/lib/python3.15/dist-packages/iotbx/pdb/tst_ext.py usr/lib/python3.15/dist-packages/iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py usr/lib/python3.15/dist-packages/iotbx/pdb/tst_hierarchy.py usr/lib/python3.15/dist-packages/iotbx/pdb/tst_hierarchy_atom_sort.py usr/lib/python3.15/dist-packages/iotbx/pdb/tst_hierarchy_flip_symmetric.py usr/lib/python3.15/dist-packages/iotbx/pdb/tst_hierarchy_flip_symmetric_2.py usr/lib/python3.15/dist-packages/iotbx/pdb/tst_input_pickling.py usr/lib/python3.15/dist-packages/iotbx/pdb/tst_mmcif.py usr/lib/python3.15/dist-packages/iotbx/pdb/tst_mmcif_hierarchy.py usr/lib/python3.15/dist-packages/iotbx/pdb/tst_mmcif_hierarchy_2.py usr/lib/python3.15/dist-packages/iotbx/pdb/tst_pdb.py usr/lib/python3.15/dist-packages/iotbx/pdb/tst_read_mtrix_records_from_cif.py usr/lib/python3.15/dist-packages/iotbx/pdb/tst_rna_dna_atom_names.py usr/lib/python3.15/dist-packages/iotbx/pdb/tst_secondary_structure.py usr/lib/python3.15/dist-packages/iotbx/pdb/tst_secondary_structure_2.py usr/lib/python3.15/dist-packages/iotbx/pdb/tst_tls.py usr/lib/python3.15/dist-packages/iotbx/pdb/tst_utils.py usr/lib/python3.15/dist-packages/iotbx/pdb/utils.py usr/lib/python3.15/dist-packages/iotbx/pdb/web_service_api.py usr/lib/python3.15/dist-packages/iotbx/pdb/xray_structure.py usr/lib/python3.15/dist-packages/iotbx/pdb/remediation/ usr/lib/python3.15/dist-packages/iotbx/pdb/remediation/__init__.py usr/lib/python3.15/dist-packages/iotbx/pdb/remediation/remediator.py usr/lib/python3.15/dist-packages/iotbx/pdb/remediation/tst_remediator.py usr/lib/python3.15/dist-packages/iotbx/programs/ usr/lib/python3.15/dist-packages/iotbx/programs/__init__.py usr/lib/python3.15/dist-packages/iotbx/programs/box_around_molecule.py usr/lib/python3.15/dist-packages/iotbx/programs/split_data_cif.py usr/lib/python3.15/dist-packages/iotbx/programs/unique_with_biomt.py usr/lib/python3.15/dist-packages/iotbx/regression/ usr/lib/python3.15/dist-packages/iotbx/regression/__init__.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_add_conformations.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_all_chain_ids.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_atom_selections_10k.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_bioinformatics.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_box_around_molecule.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_cif_1.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_cif_as_pdb_1atom.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_cli_parser.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_crystal_symmetry_from_any.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_csv_utils.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_data_manager.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_data_plots.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_examples.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_export_scalepack_unmerged.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_extract_xtal_data.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_fetch.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_file_io.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_file_reader.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_generate_n_char_string.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_group_rounding.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_hierarchy_altlocs.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_hierarchy_copy_select.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_hierarchy_forward_compatible_pdb.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_hierarchy_id_str.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_hierarchy_long_chain_ids_1.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_hierarchy_long_resname_1.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_hierarchy_long_resname_2.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_hierarchy_long_resname_3.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_hierarchy_long_resname_4.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_hierarchy_occupancies_rounding.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_hierarchy_pdb_v3.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_lattice_symmetry.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_map_manager.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_map_manager_2.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_map_manager_wrapping.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_map_model_manager.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_map_model_manager_2.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_map_model_manager_3.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_map_model_manager_4.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_map_model_manager_call_consistency.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_map_model_manager_cif.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_map_model_manager_external_sharpening_7.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_map_model_manager_local_resolution_10.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_map_model_manager_tls_from_map_8.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_map_tools.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_merging_statistics.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_miller_sort_asu.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_mmcif_input.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_mmcif_multimodel.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_mmcif_segids.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_mmcif_to_from_hierarchy.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_mrc_io.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_mtz_as_cif.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_patterson.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_pdb_as_cif.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_pdb_as_fasta.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_pdb_cif_cells.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_pdb_cif_inputs.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_pdb_link_records.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_pdbx_mmcif_tutorial.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_phases.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_phil.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_poscar.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_reflection_file_editor.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_reflection_file_reader.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_reflection_file_utils.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_reflection_statistics.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_reindex.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_restraints_merge.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_selected_hierarchy_flip.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_show_systematic_absences.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_simple_map_coefficients.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_simple_parser.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_sort_atoms.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_split_data_cif.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_split_models.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_symmetry.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_text_detection.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_wildcard.py usr/lib/python3.15/dist-packages/iotbx/regression/tst_xray_scale.py usr/lib/python3.15/dist-packages/iotbx/regression/utils.py usr/lib/python3.15/dist-packages/iotbx/regression/ncs/ usr/lib/python3.15/dist-packages/iotbx/regression/ncs/__init__.py usr/lib/python3.15/dist-packages/iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py usr/lib/python3.15/dist-packages/iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py usr/lib/python3.15/dist-packages/iotbx/regression/ncs/tst_ncs.py usr/lib/python3.15/dist-packages/iotbx/regression/ncs/tst_ncs_groups_preprocessing.py usr/lib/python3.15/dist-packages/iotbx/regression/ncs/tst_ncs_input.py usr/lib/python3.15/dist-packages/iotbx/regression/ncs/tst_ncs_input_preserves_iseqs.py usr/lib/python3.15/dist-packages/iotbx/regression/ncs/tst_ncs_reordered_chains.py usr/lib/python3.15/dist-packages/iotbx/regression/ncs/tst_ncs_search_broken_chain.py usr/lib/python3.15/dist-packages/iotbx/regression/ncs/tst_ncs_search_ligs.py usr/lib/python3.15/dist-packages/iotbx/regression/ncs/tst_ncs_search_shortcut_1.py usr/lib/python3.15/dist-packages/iotbx/regression/ncs/tst_ncs_user_selections.py usr/lib/python3.15/dist-packages/iotbx/regression/ncs/tst_ncs_without_validation.py usr/lib/python3.15/dist-packages/iotbx/scalepack/ usr/lib/python3.15/dist-packages/iotbx/scalepack/__init__.py usr/lib/python3.15/dist-packages/iotbx/scalepack/crystal_symmetry_from_hkl.py usr/lib/python3.15/dist-packages/iotbx/scalepack/merge.py usr/lib/python3.15/dist-packages/iotbx/scalepack/no_merge_original_index.py usr/lib/python3.15/dist-packages/iotbx/scalepack/space_group_dictionary.py usr/lib/python3.15/dist-packages/iotbx/scalepack/tst_merge.py usr/lib/python3.15/dist-packages/iotbx/scalepack/tst_no_merge_original_index.py usr/lib/python3.15/dist-packages/iotbx/shelx/ usr/lib/python3.15/dist-packages/iotbx/shelx/__init__.py usr/lib/python3.15/dist-packages/iotbx/shelx/crystal_symmetry_from_ins.py usr/lib/python3.15/dist-packages/iotbx/shelx/errors.py usr/lib/python3.15/dist-packages/iotbx/shelx/fcf.py usr/lib/python3.15/dist-packages/iotbx/shelx/fvar_encoding.py usr/lib/python3.15/dist-packages/iotbx/shelx/hklf.py usr/lib/python3.15/dist-packages/iotbx/shelx/lexer.py usr/lib/python3.15/dist-packages/iotbx/shelx/parsers.py usr/lib/python3.15/dist-packages/iotbx/shelx/tokens.py usr/lib/python3.15/dist-packages/iotbx/shelx/tst_fvar_encoding.py usr/lib/python3.15/dist-packages/iotbx/shelx/tst_hklf.py usr/lib/python3.15/dist-packages/iotbx/shelx/tst_lex_parse_build.py usr/lib/python3.15/dist-packages/iotbx/shelx/tst_writer.py usr/lib/python3.15/dist-packages/iotbx/shelx/write_ins.py usr/lib/python3.15/dist-packages/iotbx/shelx/writer.py usr/lib/python3.15/dist-packages/iotbx/solve/ usr/lib/python3.15/dist-packages/iotbx/solve/__init__.py usr/lib/python3.15/dist-packages/iotbx/solve/crystal_symmetry_from_inp.py usr/lib/python3.15/dist-packages/iotbx/solve/fpfm_reader.py usr/lib/python3.15/dist-packages/iotbx/xds/ usr/lib/python3.15/dist-packages/iotbx/xds/__init__.py usr/lib/python3.15/dist-packages/iotbx/xds/blank_cbf.py usr/lib/python3.15/dist-packages/iotbx/xds/correction.py usr/lib/python3.15/dist-packages/iotbx/xds/crystal_symmetry_from_hkl.py usr/lib/python3.15/dist-packages/iotbx/xds/gain_cbf.py usr/lib/python3.15/dist-packages/iotbx/xds/geometry.py usr/lib/python3.15/dist-packages/iotbx/xds/integrate_hkl.py usr/lib/python3.15/dist-packages/iotbx/xds/read_ascii.py usr/lib/python3.15/dist-packages/iotbx/xds/spot_xds.py usr/lib/python3.15/dist-packages/iotbx/xds/xds_cbf.py usr/lib/python3.15/dist-packages/iotbx/xds/xds_inp.py usr/lib/python3.15/dist-packages/iotbx/xds/xparm.py usr/lib/python3.15/dist-packages/iotbx/xplor/ usr/lib/python3.15/dist-packages/iotbx/xplor/__init__.py usr/lib/python3.15/dist-packages/iotbx/xplor/crystal_symmetry_from_map.py usr/lib/python3.15/dist-packages/iotbx/xplor/ext.py usr/lib/python3.15/dist-packages/iotbx/xplor/map.py usr/lib/python3.15/dist-packages/iotbx/xplor/tst_xplormap.py usr/lib/python3.15/dist-packages/libtbx/ usr/lib/python3.15/dist-packages/libtbx/__init__.py usr/lib/python3.15/dist-packages/libtbx/assert_utils.py usr/lib/python3.15/dist-packages/libtbx/binary_search.py usr/lib/python3.15/dist-packages/libtbx/callbacks.py usr/lib/python3.15/dist-packages/libtbx/citations.py usr/lib/python3.15/dist-packages/libtbx/clear_paths.py usr/lib/python3.15/dist-packages/libtbx/cli.py usr/lib/python3.15/dist-packages/libtbx/cluster.py usr/lib/python3.15/dist-packages/libtbx/clusterTests.py usr/lib/python3.15/dist-packages/libtbx/code_analysis.py usr/lib/python3.15/dist-packages/libtbx/complex_math.py usr/lib/python3.15/dist-packages/libtbx/configure.py usr/lib/python3.15/dist-packages/libtbx/console_utils.py usr/lib/python3.15/dist-packages/libtbx/containers.py usr/lib/python3.15/dist-packages/libtbx/cpp_function_name.py usr/lib/python3.15/dist-packages/libtbx/crossmingw.py usr/lib/python3.15/dist-packages/libtbx/dlite.py usr/lib/python3.15/dist-packages/libtbx/easy_mp.py usr/lib/python3.15/dist-packages/libtbx/easy_pickle.py usr/lib/python3.15/dist-packages/libtbx/easy_profile.py usr/lib/python3.15/dist-packages/libtbx/easy_run.py usr/lib/python3.15/dist-packages/libtbx/env_config.py usr/lib/python3.15/dist-packages/libtbx/file_clutter.py usr/lib/python3.15/dist-packages/libtbx/find_reference_cycles.py usr/lib/python3.15/dist-packages/libtbx/forward_compatibility.py usr/lib/python3.15/dist-packages/libtbx/introspection.py usr/lib/python3.15/dist-packages/libtbx/libtbx_refresh.py usr/lib/python3.15/dist-packages/libtbx/load_env.py usr/lib/python3.15/dist-packages/libtbx/log.py usr/lib/python3.15/dist-packages/libtbx/math_utils.py usr/lib/python3.15/dist-packages/libtbx/metric_prefixes.py usr/lib/python3.15/dist-packages/libtbx/mpi4py.py usr/lib/python3.15/dist-packages/libtbx/object_oriented_patterns.py usr/lib/python3.15/dist-packages/libtbx/objgraph.py usr/lib/python3.15/dist-packages/libtbx/option_parser.py usr/lib/python3.15/dist-packages/libtbx/path.py usr/lib/python3.15/dist-packages/libtbx/pkg_utils.py usr/lib/python3.15/dist-packages/libtbx/program_template.py usr/lib/python3.15/dist-packages/libtbx/progress.py usr/lib/python3.15/dist-packages/libtbx/pyframe.py usr/lib/python3.15/dist-packages/libtbx/pyplot.py usr/lib/python3.15/dist-packages/libtbx/python_code_parsing.py usr/lib/python3.15/dist-packages/libtbx/resource_monitor.py usr/lib/python3.15/dist-packages/libtbx/run_tests.py usr/lib/python3.15/dist-packages/libtbx/runtime_utils.py usr/lib/python3.15/dist-packages/libtbx/simplexml.py usr/lib/python3.15/dist-packages/libtbx/smart_open.py usr/lib/python3.15/dist-packages/libtbx/start_print_trace.py usr/lib/python3.15/dist-packages/libtbx/str_utils.py usr/lib/python3.15/dist-packages/libtbx/subprocess_with_fixes.py usr/lib/python3.15/dist-packages/libtbx/table_utils.py usr/lib/python3.15/dist-packages/libtbx/thread_utils.py usr/lib/python3.15/dist-packages/libtbx/topological_sort.py usr/lib/python3.15/dist-packages/libtbx/try_hello_world_c.py usr/lib/python3.15/dist-packages/libtbx/tst_add_docstrings_with_ai.py usr/lib/python3.15/dist-packages/libtbx/tst_binary_search.py usr/lib/python3.15/dist-packages/libtbx/tst_citation_encoding.py usr/lib/python3.15/dist-packages/libtbx/tst_citations.py usr/lib/python3.15/dist-packages/libtbx/tst_conda_dispatcher.py usr/lib/python3.15/dist-packages/libtbx/tst_containers.py usr/lib/python3.15/dist-packages/libtbx/tst_dlite.py usr/lib/python3.15/dist-packages/libtbx/tst_easy_mp.py usr/lib/python3.15/dist-packages/libtbx/tst_easy_mp_multicore.py usr/lib/python3.15/dist-packages/libtbx/tst_easy_mp_state.py usr/lib/python3.15/dist-packages/libtbx/tst_easy_pickle.py usr/lib/python3.15/dist-packages/libtbx/tst_find_unused_imports.py usr/lib/python3.15/dist-packages/libtbx/tst_fully_buffered_timeout.py usr/lib/python3.15/dist-packages/libtbx/tst_guided_coding.py usr/lib/python3.15/dist-packages/libtbx/tst_mahalanobis.py usr/lib/python3.15/dist-packages/libtbx/tst_math_utils.py usr/lib/python3.15/dist-packages/libtbx/tst_object_oriented_patterns.py usr/lib/python3.15/dist-packages/libtbx/tst_path.py usr/lib/python3.15/dist-packages/libtbx/tst_program_template.py usr/lib/python3.15/dist-packages/libtbx/tst_python_code_parsing.py usr/lib/python3.15/dist-packages/libtbx/tst_representation.py usr/lib/python3.15/dist-packages/libtbx/tst_run_tests_parallel_retry.py usr/lib/python3.15/dist-packages/libtbx/tst_run_tests_parallel_unique_dirs.py usr/lib/python3.15/dist-packages/libtbx/tst_runtime_utils.py usr/lib/python3.15/dist-packages/libtbx/tst_scheduling.py usr/lib/python3.15/dist-packages/libtbx/tst_str_utils.py usr/lib/python3.15/dist-packages/libtbx/tst_t96_roster.py usr/lib/python3.15/dist-packages/libtbx/tst_thread_utils.py usr/lib/python3.15/dist-packages/libtbx/tst_topological_sort.py usr/lib/python3.15/dist-packages/libtbx/tst_utils.py usr/lib/python3.15/dist-packages/libtbx/tst_version.py usr/lib/python3.15/dist-packages/libtbx/tst_word_index_generator.py usr/lib/python3.15/dist-packages/libtbx/tst_xmlrpc_utils.py usr/lib/python3.15/dist-packages/libtbx/utils.py usr/lib/python3.15/dist-packages/libtbx/version.py usr/lib/python3.15/dist-packages/libtbx/wingide.py usr/lib/python3.15/dist-packages/libtbx/word_index_generator.py usr/lib/python3.15/dist-packages/libtbx/xmlrpc_server_example.py usr/lib/python3.15/dist-packages/libtbx/xmlrpc_utils.py usr/lib/python3.15/dist-packages/libtbx/auto_build/ usr/lib/python3.15/dist-packages/libtbx/auto_build/__init__.py usr/lib/python3.15/dist-packages/libtbx/auto_build/bootstrap.py usr/lib/python3.15/dist-packages/libtbx/auto_build/create_cctbx_bundle_for_installer.py usr/lib/python3.15/dist-packages/libtbx/auto_build/create_installer.py usr/lib/python3.15/dist-packages/libtbx/auto_build/create_mac_app.py usr/lib/python3.15/dist-packages/libtbx/auto_build/create_mac_pkg.py usr/lib/python3.15/dist-packages/libtbx/auto_build/create_windows_exe.py usr/lib/python3.15/dist-packages/libtbx/auto_build/create_windows_installer.py usr/lib/python3.15/dist-packages/libtbx/auto_build/install_base_packages.py usr/lib/python3.15/dist-packages/libtbx/auto_build/install_conda.py usr/lib/python3.15/dist-packages/libtbx/auto_build/install_distribution.py usr/lib/python3.15/dist-packages/libtbx/auto_build/installer_utils.py usr/lib/python3.15/dist-packages/libtbx/auto_build/make_bundle.py usr/lib/python3.15/dist-packages/libtbx/auto_build/package_defs.py usr/lib/python3.15/dist-packages/libtbx/auto_build/plus_installer.py usr/lib/python3.15/dist-packages/libtbx/auto_build/regenerate_module_files.py usr/lib/python3.15/dist-packages/libtbx/auto_build/rpath.py usr/lib/python3.15/dist-packages/libtbx/auto_build/setup_installer.py usr/lib/python3.15/dist-packages/libtbx/auto_build/write_gui_dispatcher_include.py usr/lib/python3.15/dist-packages/libtbx/bundle/ usr/lib/python3.15/dist-packages/libtbx/bundle/__init__.py usr/lib/python3.15/dist-packages/libtbx/bundle/copy_all.py usr/lib/python3.15/dist-packages/libtbx/bundle/copy_build_libtbx.py usr/lib/python3.15/dist-packages/libtbx/bundle/copy_runtime_sources.py usr/lib/python3.15/dist-packages/libtbx/bundle/install_bat.py usr/lib/python3.15/dist-packages/libtbx/bundle/install_csh.py usr/lib/python3.15/dist-packages/libtbx/bundle/utils.py usr/lib/python3.15/dist-packages/libtbx/command_line/ usr/lib/python3.15/dist-packages/libtbx/command_line/__init__.py usr/lib/python3.15/dist-packages/libtbx/command_line/add_docstrings_with_ai.py usr/lib/python3.15/dist-packages/libtbx/command_line/analyse_code_comments.py usr/lib/python3.15/dist-packages/libtbx/command_line/any2unix.py usr/lib/python3.15/dist-packages/libtbx/command_line/assert_line_count.py usr/lib/python3.15/dist-packages/libtbx/command_line/assert_not_show_diff.py usr/lib/python3.15/dist-packages/libtbx/command_line/assert_stdin.py usr/lib/python3.15/dist-packages/libtbx/command_line/assert_stdin_contains_strings.py usr/lib/python3.15/dist-packages/libtbx/command_line/assert_stdin_ends_with.py usr/lib/python3.15/dist-packages/libtbx/command_line/bootstrap.py usr/lib/python3.15/dist-packages/libtbx/command_line/bundle_as_exe.py usr/lib/python3.15/dist-packages/libtbx/command_line/cctbx_chunk.py usr/lib/python3.15/dist-packages/libtbx/command_line/check_libcpp.py usr/lib/python3.15/dist-packages/libtbx/command_line/clean_clutter.py usr/lib/python3.15/dist-packages/libtbx/command_line/clear_paths.py usr/lib/python3.15/dist-packages/libtbx/command_line/create_cctbx_bundle_for_installer.py usr/lib/python3.15/dist-packages/libtbx/command_line/create_install_script_bat.py usr/lib/python3.15/dist-packages/libtbx/command_line/create_installer.py usr/lib/python3.15/dist-packages/libtbx/command_line/create_mac_app.py usr/lib/python3.15/dist-packages/libtbx/command_line/create_selfx.py usr/lib/python3.15/dist-packages/libtbx/command_line/create_unzipsfx.py usr/lib/python3.15/dist-packages/libtbx/command_line/create_windows_exe.py usr/lib/python3.15/dist-packages/libtbx/command_line/dtrace.py usr/lib/python3.15/dist-packages/libtbx/command_line/easy_qsub.py usr/lib/python3.15/dist-packages/libtbx/command_line/env_run.py usr/lib/python3.15/dist-packages/libtbx/command_line/epydoc_run.py usr/lib/python3.15/dist-packages/libtbx/command_line/extract_code_from_txt.py usr/lib/python3.15/dist-packages/libtbx/command_line/find_clutter.py usr/lib/python3.15/dist-packages/libtbx/command_line/find_files.py usr/lib/python3.15/dist-packages/libtbx/command_line/find_in_repositories.py usr/lib/python3.15/dist-packages/libtbx/command_line/find_old_style_classes.py usr/lib/python3.15/dist-packages/libtbx/command_line/find_pdb_mmcif_problems.py usr/lib/python3.15/dist-packages/libtbx/command_line/find_reserved_names.py usr/lib/python3.15/dist-packages/libtbx/command_line/find_under_build.py usr/lib/python3.15/dist-packages/libtbx/command_line/find_untested.py usr/lib/python3.15/dist-packages/libtbx/command_line/find_unused_imports.py usr/lib/python3.15/dist-packages/libtbx/command_line/find_unused_imports_crude.py usr/lib/python3.15/dist-packages/libtbx/command_line/git_avoid_merges.py usr/lib/python3.15/dist-packages/libtbx/command_line/help.py usr/lib/python3.15/dist-packages/libtbx/command_line/import_all_ext.py usr/lib/python3.15/dist-packages/libtbx/command_line/import_all_python.py usr/lib/python3.15/dist-packages/libtbx/command_line/install.py usr/lib/python3.15/dist-packages/libtbx/command_line/install_conda.py usr/lib/python3.15/dist-packages/libtbx/command_line/ipython_shell_start.py usr/lib/python3.15/dist-packages/libtbx/command_line/line_count.py usr/lib/python3.15/dist-packages/libtbx/command_line/list_files.py usr/lib/python3.15/dist-packages/libtbx/command_line/list_modules.py usr/lib/python3.15/dist-packages/libtbx/command_line/list_source_files_sorted_by_size.py usr/lib/python3.15/dist-packages/libtbx/command_line/make_dist.py usr/lib/python3.15/dist-packages/libtbx/command_line/make_sphinx_html.py usr/lib/python3.15/dist-packages/libtbx/command_line/nequal.py usr/lib/python3.15/dist-packages/libtbx/command_line/parallel_simple.py usr/lib/python3.15/dist-packages/libtbx/command_line/path_utility.py usr/lib/python3.15/dist-packages/libtbx/command_line/phil.py usr/lib/python3.15/dist-packages/libtbx/command_line/prime_factors_of.py usr/lib/python3.15/dist-packages/libtbx/command_line/printenv.py usr/lib/python3.15/dist-packages/libtbx/command_line/py_compile_all.py usr/lib/python3.15/dist-packages/libtbx/command_line/raise_exception_for_testing.py usr/lib/python3.15/dist-packages/libtbx/command_line/reindent.py usr/lib/python3.15/dist-packages/libtbx/command_line/remote_processing.py usr/lib/python3.15/dist-packages/libtbx/command_line/remove_tree.py usr/lib/python3.15/dist-packages/libtbx/command_line/remove_unused_imports.py usr/lib/python3.15/dist-packages/libtbx/command_line/resource_monitor_plot.py usr/lib/python3.15/dist-packages/libtbx/command_line/run_pickled_function.py usr/lib/python3.15/dist-packages/libtbx/command_line/run_tests_parallel.py usr/lib/python3.15/dist-packages/libtbx/command_line/scons.py usr/lib/python3.15/dist-packages/libtbx/command_line/seconds_since_the_epoch.py usr/lib/python3.15/dist-packages/libtbx/command_line/sge_available_slots.py usr/lib/python3.15/dist-packages/libtbx/command_line/sge_qstat_counts.py usr/lib/python3.15/dist-packages/libtbx/command_line/show_all_on_path.py usr/lib/python3.15/dist-packages/libtbx/command_line/show_bin_path.py usr/lib/python3.15/dist-packages/libtbx/command_line/show_build_options.py usr/lib/python3.15/dist-packages/libtbx/command_line/show_build_path.py usr/lib/python3.15/dist-packages/libtbx/command_line/show_but_no_repr.py usr/lib/python3.15/dist-packages/libtbx/command_line/show_commands.py usr/lib/python3.15/dist-packages/libtbx/command_line/show_date_and_time.py usr/lib/python3.15/dist-packages/libtbx/command_line/show_dist_paths.py usr/lib/python3.15/dist-packages/libtbx/command_line/show_env.py usr/lib/python3.15/dist-packages/libtbx/command_line/show_environ_usage.py usr/lib/python3.15/dist-packages/libtbx/command_line/show_full_command_path.py usr/lib/python3.15/dist-packages/libtbx/command_line/show_host_and_user.py usr/lib/python3.15/dist-packages/libtbx/command_line/show_include_paths.py usr/lib/python3.15/dist-packages/libtbx/command_line/show_lib_path.py usr/lib/python3.15/dist-packages/libtbx/command_line/show_module_dependencies.py usr/lib/python3.15/dist-packages/libtbx/command_line/show_number_of_processors.py usr/lib/python3.15/dist-packages/libtbx/command_line/show_numeric_version.py usr/lib/python3.15/dist-packages/libtbx/command_line/show_numpy_version.py usr/lib/python3.15/dist-packages/libtbx/command_line/show_python_dependencies.py usr/lib/python3.15/dist-packages/libtbx/command_line/show_python_sys_executable.py usr/lib/python3.15/dist-packages/libtbx/command_line/show_pythonpath.py usr/lib/python3.15/dist-packages/libtbx/command_line/show_repository_paths.py usr/lib/python3.15/dist-packages/libtbx/command_line/show_tests.py usr/lib/python3.15/dist-packages/libtbx/command_line/show_variable_names.py usr/lib/python3.15/dist-packages/libtbx/command_line/sphinx_build.py usr/lib/python3.15/dist-packages/libtbx/command_line/start_binary_bundle.py usr/lib/python3.15/dist-packages/libtbx/command_line/start_process.py usr/lib/python3.15/dist-packages/libtbx/command_line/wait_for_file.py usr/lib/python3.15/dist-packages/libtbx/development/ usr/lib/python3.15/dist-packages/libtbx/development/__init__.py usr/lib/python3.15/dist-packages/libtbx/development/except_Exception.py usr/lib/python3.15/dist-packages/libtbx/development/timers.py usr/lib/python3.15/dist-packages/libtbx/development/xcode_build_phase.py usr/lib/python3.15/dist-packages/libtbx/jobs/ usr/lib/python3.15/dist-packages/libtbx/jobs/__init__.py usr/lib/python3.15/dist-packages/libtbx/jobs/fake_slurm.py usr/lib/python3.15/dist-packages/libtbx/jobs/manager.py usr/lib/python3.15/dist-packages/libtbx/jobs/tst_batch.py usr/lib/python3.15/dist-packages/libtbx/jobs/tst_local.py usr/lib/python3.15/dist-packages/libtbx/jobs/tst_manager.py usr/lib/python3.15/dist-packages/libtbx/jobs/tst_slurm.py usr/lib/python3.15/dist-packages/libtbx/jobs/backends/ usr/lib/python3.15/dist-packages/libtbx/jobs/backends/__init__.py usr/lib/python3.15/dist-packages/libtbx/jobs/backends/base.py usr/lib/python3.15/dist-packages/libtbx/jobs/backends/batch.py usr/lib/python3.15/dist-packages/libtbx/jobs/backends/local.py usr/lib/python3.15/dist-packages/libtbx/jobs/backends/slurm.py usr/lib/python3.15/dist-packages/libtbx/langchain/ usr/lib/python3.15/dist-packages/libtbx/langchain/__init__.py usr/lib/python3.15/dist-packages/libtbx/langchain/phenix_knowledge.py usr/lib/python3.15/dist-packages/libtbx/langchain/run_build_db.py usr/lib/python3.15/dist-packages/libtbx/langchain/run_inspect_db.py usr/lib/python3.15/dist-packages/libtbx/langchain/run_query_docs.py usr/lib/python3.15/dist-packages/libtbx/langchain/agent/ usr/lib/python3.15/dist-packages/libtbx/langchain/agent/__init__.py usr/lib/python3.15/dist-packages/libtbx/langchain/agent/advice_preprocessor.py 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usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_planning_framework.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_portkey_embedding_model.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_predict_and_build_no_ncs.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_preprocessor_file_override.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_program_identity.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_program_registration.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_program_requirements.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_protocol_version.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_provider_error_classification.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_provider_lock.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_raw_advice_scanner.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_reactive_deviation_hold.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_reasoning_command_divergence.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_rebuild_template_selection.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_refine_final_rfree.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_report_verifier.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_resolve_cryo_em_ncs_inject.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_resume_reopen_stages.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_rfree_flags_missing.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_rfree_generate_guard.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_rfree_lock_reconciliation.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_rfree_resolution_stop.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_safe_float_consolidation.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_sanity_checker.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_scenario_tracer.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_sequence_only_routing.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_session_directives.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_session_summary.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_session_tools.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_settings_list_coercion.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_shared_code_imports.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_silent_stop_abort_messages.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_simple_extractor_validation.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_skip_promotion.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_skip_to_program.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_solve_action_keywords.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_space_group_validation.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_spurious_stop_after_requested.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_standalone_consistency.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_state_serialization.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_step1f_single_emit.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_stop_condition_false_positive.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_stop_condition_fix.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_stop_reason_codes.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_stop_reason_prompt.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_strategy_memory.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_structure_model.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_summary_display.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_summary_file.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_supported_providers_single_source.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_template.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_thinking_agent.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_thinking_defense.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_transport.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_transport_surfaces.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_user_advice_filter.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_utils.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_v112_13_fixes.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_v120_providers.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_validate_file_overrides.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_validate_step_after_program_guard.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_validation_history.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_workflow_complete_stop.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_workflow_state.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_yaml_config.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/tst_yaml_tools.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/integration/ usr/lib/python3.15/dist-packages/libtbx/langchain/tests/integration/__init__.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/llm/ usr/lib/python3.15/dist-packages/libtbx/langchain/tests/llm/__init__.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/llm/canary_check.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/llm/framework.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/llm/run_llm_tests.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/llm/tst_a1_extractor_smoke.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/llm/tst_b1_stop_after_requested.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/llm/tst_b2_gated_wipe_planning.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/llm/tst_c1_raw_authority.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/llm/tst_directive_extraction.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/llm/tst_framework_self.py usr/lib/python3.15/dist-packages/libtbx/langchain/tests/llm/tst_planning.py usr/lib/python3.15/dist-packages/libtbx/langchain/utils/ usr/lib/python3.15/dist-packages/libtbx/langchain/utils/__init__.py usr/lib/python3.15/dist-packages/libtbx/langchain/utils/query.py usr/lib/python3.15/dist-packages/libtbx/langchain/utils/run_utils.py usr/lib/python3.15/dist-packages/libtbx/langchain/utils/text_processing.py usr/lib/python3.15/dist-packages/libtbx/phil/ usr/lib/python3.15/dist-packages/libtbx/phil/__init__.py usr/lib/python3.15/dist-packages/libtbx/phil/command_line.py usr/lib/python3.15/dist-packages/libtbx/phil/experimental.py usr/lib/python3.15/dist-packages/libtbx/phil/gui_objects.py usr/lib/python3.15/dist-packages/libtbx/phil/interface.py usr/lib/python3.15/dist-packages/libtbx/phil/parser.py usr/lib/python3.15/dist-packages/libtbx/phil/tokenizer.py usr/lib/python3.15/dist-packages/libtbx/phil/tst.py usr/lib/python3.15/dist-packages/libtbx/phil/tst_experimental.py usr/lib/python3.15/dist-packages/libtbx/phil/tst_interface.py usr/lib/python3.15/dist-packages/libtbx/phil/tst_tokenizer.py usr/lib/python3.15/dist-packages/libtbx/program_utils/ usr/lib/python3.15/dist-packages/libtbx/program_utils/__init__.py usr/lib/python3.15/dist-packages/libtbx/program_utils/result.py usr/lib/python3.15/dist-packages/libtbx/program_utils/statistics_info.py usr/lib/python3.15/dist-packages/libtbx/queuing_system_utils/ usr/lib/python3.15/dist-packages/libtbx/queuing_system_utils/__init__.py usr/lib/python3.15/dist-packages/libtbx/queuing_system_utils/communication.py usr/lib/python3.15/dist-packages/libtbx/queuing_system_utils/generic.py usr/lib/python3.15/dist-packages/libtbx/queuing_system_utils/looping.py usr/lib/python3.15/dist-packages/libtbx/queuing_system_utils/lsf.py usr/lib/python3.15/dist-packages/libtbx/queuing_system_utils/pbs_utils.py usr/lib/python3.15/dist-packages/libtbx/queuing_system_utils/remote.py usr/lib/python3.15/dist-packages/libtbx/queuing_system_utils/scheduling.py usr/lib/python3.15/dist-packages/libtbx/queuing_system_utils/scheduling_helpers.py usr/lib/python3.15/dist-packages/libtbx/queuing_system_utils/sge_utils.py usr/lib/python3.15/dist-packages/libtbx/queuing_system_utils/tst.py usr/lib/python3.15/dist-packages/libtbx/queuing_system_utils/processing/ usr/lib/python3.15/dist-packages/libtbx/queuing_system_utils/processing/__init__.py usr/lib/python3.15/dist-packages/libtbx/queuing_system_utils/processing/errors.py usr/lib/python3.15/dist-packages/libtbx/queuing_system_utils/processing/polling.py usr/lib/python3.15/dist-packages/libtbx/queuing_system_utils/processing/status.py usr/lib/python3.15/dist-packages/libtbx/queuing_system_utils/processing/submission.py usr/lib/python3.15/dist-packages/libtbx/queuing_system_utils/processing/transfer.py usr/lib/python3.15/dist-packages/libtbx/queuing_system_utils/processing/util.py usr/lib/python3.15/dist-packages/libtbx/scheduling/ usr/lib/python3.15/dist-packages/libtbx/scheduling/__init__.py usr/lib/python3.15/dist-packages/libtbx/scheduling/cluster_handler.py usr/lib/python3.15/dist-packages/libtbx/scheduling/file_queue.py usr/lib/python3.15/dist-packages/libtbx/scheduling/job_scheduler.py usr/lib/python3.15/dist-packages/libtbx/scheduling/mainthread.py usr/lib/python3.15/dist-packages/libtbx/scheduling/mp_handler.py usr/lib/python3.15/dist-packages/libtbx/scheduling/parallel_for.py usr/lib/python3.15/dist-packages/libtbx/scheduling/philgen.py usr/lib/python3.15/dist-packages/libtbx/scheduling/process_pool.py usr/lib/python3.15/dist-packages/libtbx/scheduling/result.py usr/lib/python3.15/dist-packages/libtbx/scheduling/shared_resource.py usr/lib/python3.15/dist-packages/libtbx/scheduling/socket_queue.py usr/lib/python3.15/dist-packages/libtbx/scheduling/stacktrace.py usr/lib/python3.15/dist-packages/libtbx/scheduling/thread_handler.py usr/lib/python3.15/dist-packages/libtbx/server/ usr/lib/python3.15/dist-packages/libtbx/server/FileClient.py usr/lib/python3.15/dist-packages/libtbx/server/FileServer.py usr/lib/python3.15/dist-packages/libtbx/server/FileSocket.py usr/lib/python3.15/dist-packages/libtbx/server/SocketServer.py usr/lib/python3.15/dist-packages/libtbx/server/StartServer.py usr/lib/python3.15/dist-packages/libtbx/server/__init__.py usr/lib/python3.15/dist-packages/libtbx/sphinx/ usr/lib/python3.15/dist-packages/libtbx/sphinx/__init__.py usr/lib/python3.15/dist-packages/libtbx/sphinx/phil.py usr/lib/python3.15/dist-packages/libtbx/sphinx/pubmed.py usr/lib/python3.15/dist-packages/libtbx/sphinx/python_string.py usr/lib/python3.15/dist-packages/libtbx/test_utils/ usr/lib/python3.15/dist-packages/libtbx/test_utils/__init__.py usr/lib/python3.15/dist-packages/libtbx/test_utils/parallel.py usr/lib/python3.15/dist-packages/libtbx/test_utils/t96_roster.py usr/lib/python3.15/dist-packages/mmtbx/ usr/lib/python3.15/dist-packages/mmtbx/__init__.py usr/lib/python3.15/dist-packages/mmtbx/arrays.py usr/lib/python3.15/dist-packages/mmtbx/clashes.py usr/lib/python3.15/dist-packages/mmtbx/domains_from_pae.py usr/lib/python3.15/dist-packages/mmtbx/f_model_info.py usr/lib/python3.15/dist-packages/mmtbx/find_peaks.py usr/lib/python3.15/dist-packages/mmtbx/grow_density.py usr/lib/python3.15/dist-packages/mmtbx/invariant_domain.py usr/lib/python3.15/dist-packages/mmtbx/lattice.py usr/lib/python3.15/dist-packages/mmtbx/libtbx_refresh.py usr/lib/python3.15/dist-packages/mmtbx/map_tools.py usr/lib/python3.15/dist-packages/mmtbx/model_vs_data.py usr/lib/python3.15/dist-packages/mmtbx/msa.py usr/lib/python3.15/dist-packages/mmtbx/pdb_distances.py usr/lib/python3.15/dist-packages/mmtbx/pdb_symmetry.py usr/lib/python3.15/dist-packages/mmtbx/pdbtools.py usr/lib/python3.15/dist-packages/mmtbx/process_predicted_model.py usr/lib/python3.15/dist-packages/mmtbx/proq2.py usr/lib/python3.15/dist-packages/mmtbx/real_space_correlation.py usr/lib/python3.15/dist-packages/mmtbx/resolve_resources.py usr/lib/python3.15/dist-packages/mmtbx/restraints.py usr/lib/python3.15/dist-packages/mmtbx/run_tests.py usr/lib/python3.15/dist-packages/mmtbx/superpose.py usr/lib/python3.15/dist-packages/mmtbx/xmanip.py usr/lib/python3.15/dist-packages/mmtbx/xmanip_tasks.py usr/lib/python3.15/dist-packages/mmtbx/alignment/ usr/lib/python3.15/dist-packages/mmtbx/alignment/__init__.py usr/lib/python3.15/dist-packages/mmtbx/atomic_environment_vectors/ usr/lib/python3.15/dist-packages/mmtbx/atomic_environment_vectors/__init__.py usr/lib/python3.15/dist-packages/mmtbx/atomic_environment_vectors/tst.py usr/lib/python3.15/dist-packages/mmtbx/building/ usr/lib/python3.15/dist-packages/mmtbx/building/__init__.py usr/lib/python3.15/dist-packages/mmtbx/building/cablam_idealization.py usr/lib/python3.15/dist-packages/mmtbx/building/extend_sidechains.py usr/lib/python3.15/dist-packages/mmtbx/building/loop_idealization.py usr/lib/python3.15/dist-packages/mmtbx/building/merge_models.py usr/lib/python3.15/dist-packages/mmtbx/building/minimize_chain.py usr/lib/python3.15/dist-packages/mmtbx/building/tst_extend_sidechains.py usr/lib/python3.15/dist-packages/mmtbx/building/tst_extend_sidechains_2.py usr/lib/python3.15/dist-packages/mmtbx/building/ligands/ usr/lib/python3.15/dist-packages/mmtbx/building/ligands/__init__.py usr/lib/python3.15/dist-packages/mmtbx/building/ligands/lifi.py usr/lib/python3.15/dist-packages/mmtbx/building/ligands/tst_00.py usr/lib/python3.15/dist-packages/mmtbx/building/loop_closure/ usr/lib/python3.15/dist-packages/mmtbx/building/loop_closure/__init__.py usr/lib/python3.15/dist-packages/mmtbx/building/loop_closure/berkeley_ramalyze.py usr/lib/python3.15/dist-packages/mmtbx/building/loop_closure/ccd.py usr/lib/python3.15/dist-packages/mmtbx/building/loop_closure/starting_conformations.py usr/lib/python3.15/dist-packages/mmtbx/building/loop_closure/utils.py usr/lib/python3.15/dist-packages/mmtbx/bulk_solvent/ usr/lib/python3.15/dist-packages/mmtbx/bulk_solvent/__init__.py usr/lib/python3.15/dist-packages/mmtbx/bulk_solvent/bulk_solvent_and_scaling.py usr/lib/python3.15/dist-packages/mmtbx/bulk_solvent/example.py usr/lib/python3.15/dist-packages/mmtbx/bulk_solvent/example2.py usr/lib/python3.15/dist-packages/mmtbx/bulk_solvent/f_model_all_scales.py usr/lib/python3.15/dist-packages/mmtbx/bulk_solvent/kbu_refinery.py usr/lib/python3.15/dist-packages/mmtbx/bulk_solvent/mosaic.py usr/lib/python3.15/dist-packages/mmtbx/bulk_solvent/multi_mask_bulk_solvent.py usr/lib/python3.15/dist-packages/mmtbx/bulk_solvent/scaler.py usr/lib/python3.15/dist-packages/mmtbx/bulk_solvent/tst_aniso_scaler.py usr/lib/python3.15/dist-packages/mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py usr/lib/python3.15/dist-packages/mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py usr/lib/python3.15/dist-packages/mmtbx/bulk_solvent/tst_flat_nonuniform.py usr/lib/python3.15/dist-packages/mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py usr/lib/python3.15/dist-packages/mmtbx/bulk_solvent/tst_mosaic.py usr/lib/python3.15/dist-packages/mmtbx/bulk_solvent/tst_scaler.py usr/lib/python3.15/dist-packages/mmtbx/chemical_components/ usr/lib/python3.15/dist-packages/mmtbx/chemical_components/__init__.py usr/lib/python3.15/dist-packages/mmtbx/chemical_components/cif_parser.py usr/lib/python3.15/dist-packages/mmtbx/chemical_components/tst.py usr/lib/python3.15/dist-packages/mmtbx/command_line/ usr/lib/python3.15/dist-packages/mmtbx/command_line/__init__.py usr/lib/python3.15/dist-packages/mmtbx/command_line/altloc_remediate.py usr/lib/python3.15/dist-packages/mmtbx/command_line/angle.py usr/lib/python3.15/dist-packages/mmtbx/command_line/apply_ncs_to_ligand.py usr/lib/python3.15/dist-packages/mmtbx/command_line/arginine_geometry.py usr/lib/python3.15/dist-packages/mmtbx/command_line/atom_valence_simple.py usr/lib/python3.15/dist-packages/mmtbx/command_line/barbed_wire_analysis.py usr/lib/python3.15/dist-packages/mmtbx/command_line/cablam.py usr/lib/python3.15/dist-packages/mmtbx/command_line/cablam_idealization.py usr/lib/python3.15/dist-packages/mmtbx/command_line/cbetadev.py usr/lib/python3.15/dist-packages/mmtbx/command_line/cc_star.py usr/lib/python3.15/dist-packages/mmtbx/command_line/chiral_validation.py usr/lib/python3.15/dist-packages/mmtbx/command_line/cif_as_mtz.py usr/lib/python3.15/dist-packages/mmtbx/command_line/clashscore.py usr/lib/python3.15/dist-packages/mmtbx/command_line/clashscore2.py usr/lib/python3.15/dist-packages/mmtbx/command_line/comparama.py usr/lib/python3.15/dist-packages/mmtbx/command_line/debug_riding.py usr/lib/python3.15/dist-packages/mmtbx/command_line/density_modification.py usr/lib/python3.15/dist-packages/mmtbx/command_line/development_aev.py usr/lib/python3.15/dist-packages/mmtbx/command_line/development_fem.py usr/lib/python3.15/dist-packages/mmtbx/command_line/distance_difference.py usr/lib/python3.15/dist-packages/mmtbx/command_line/dynamics.py usr/lib/python3.15/dist-packages/mmtbx/command_line/electrons.py usr/lib/python3.15/dist-packages/mmtbx/command_line/emringer.py usr/lib/python3.15/dist-packages/mmtbx/command_line/emringer_score.py usr/lib/python3.15/dist-packages/mmtbx/command_line/estimate_bijvoet_ratio.py usr/lib/python3.15/dist-packages/mmtbx/command_line/f000.py usr/lib/python3.15/dist-packages/mmtbx/command_line/fab_elbow_angle.py usr/lib/python3.15/dist-packages/mmtbx/command_line/fake_f_obs.py usr/lib/python3.15/dist-packages/mmtbx/command_line/fetch_pdb.py usr/lib/python3.15/dist-packages/mmtbx/command_line/find_peaks_holes.py usr/lib/python3.15/dist-packages/mmtbx/command_line/find_residue_in_pdb.py usr/lib/python3.15/dist-packages/mmtbx/command_line/find_tls_groups.py usr/lib/python3.15/dist-packages/mmtbx/command_line/fmodel.py usr/lib/python3.15/dist-packages/mmtbx/command_line/fobs_minus_fobs_map.py usr/lib/python3.15/dist-packages/mmtbx/command_line/geometry_minimization.py usr/lib/python3.15/dist-packages/mmtbx/command_line/grow_density.py usr/lib/python3.15/dist-packages/mmtbx/command_line/hbond.py usr/lib/python3.15/dist-packages/mmtbx/command_line/helix_sheet_recs_as_pdb_files.py usr/lib/python3.15/dist-packages/mmtbx/command_line/holton_geometry_validation.py usr/lib/python3.15/dist-packages/mmtbx/command_line/hydrogenate.py usr/lib/python3.15/dist-packages/mmtbx/command_line/kinemage.py usr/lib/python3.15/dist-packages/mmtbx/command_line/ligand_restraints_validation.py usr/lib/python3.15/dist-packages/mmtbx/command_line/map_box.py usr/lib/python3.15/dist-packages/mmtbx/command_line/map_comparison.py usr/lib/python3.15/dist-packages/mmtbx/command_line/map_to_model_histogram.py usr/lib/python3.15/dist-packages/mmtbx/command_line/map_to_structure_factors.py usr/lib/python3.15/dist-packages/mmtbx/command_line/maps.py usr/lib/python3.15/dist-packages/mmtbx/command_line/mask.py usr/lib/python3.15/dist-packages/mmtbx/command_line/massage_data.py usr/lib/python3.15/dist-packages/mmtbx/command_line/matthews.py usr/lib/python3.15/dist-packages/mmtbx/command_line/maximum_entropy_map.py usr/lib/python3.15/dist-packages/mmtbx/command_line/model_idealization.py usr/lib/python3.15/dist-packages/mmtbx/command_line/model_map.py usr/lib/python3.15/dist-packages/mmtbx/command_line/model_model_distances.py usr/lib/python3.15/dist-packages/mmtbx/command_line/model_vs_data.py usr/lib/python3.15/dist-packages/mmtbx/command_line/model_vs_map.py usr/lib/python3.15/dist-packages/mmtbx/command_line/model_vs_sequence.py usr/lib/python3.15/dist-packages/mmtbx/command_line/models_as_chains.py usr/lib/python3.15/dist-packages/mmtbx/command_line/molprobity.py usr/lib/python3.15/dist-packages/mmtbx/command_line/mon_lib_cif_triage.py usr/lib/python3.15/dist-packages/mmtbx/command_line/mp_geo.py usr/lib/python3.15/dist-packages/mmtbx/command_line/mp_validate_bonds.py usr/lib/python3.15/dist-packages/mmtbx/command_line/mtz2map.py usr/lib/python3.15/dist-packages/mmtbx/command_line/next_gen_atom_typing.py usr/lib/python3.15/dist-packages/mmtbx/command_line/next_gen_residue_typing.py usr/lib/python3.15/dist-packages/mmtbx/command_line/nonbonded_overlaps.py usr/lib/python3.15/dist-packages/mmtbx/command_line/omegalyze.py usr/lib/python3.15/dist-packages/mmtbx/command_line/pdb_atom_selection.py usr/lib/python3.15/dist-packages/mmtbx/command_line/pdb_interpretation.py usr/lib/python3.15/dist-packages/mmtbx/command_line/pdbtools.py usr/lib/python3.15/dist-packages/mmtbx/command_line/perigee.py usr/lib/python3.15/dist-packages/mmtbx/command_line/plan_sad_experiment.py usr/lib/python3.15/dist-packages/mmtbx/command_line/polder.py usr/lib/python3.15/dist-packages/mmtbx/command_line/prepare_pdb_deposition.py usr/lib/python3.15/dist-packages/mmtbx/command_line/probe2.py usr/lib/python3.15/dist-packages/mmtbx/command_line/probescore_ligand.py usr/lib/python3.15/dist-packages/mmtbx/command_line/process_predicted_model.py usr/lib/python3.15/dist-packages/mmtbx/command_line/prune_model.py usr/lib/python3.15/dist-packages/mmtbx/command_line/quantum_interface.py usr/lib/python3.15/dist-packages/mmtbx/command_line/r_factor_statistics.py usr/lib/python3.15/dist-packages/mmtbx/command_line/rama_z.py usr/lib/python3.15/dist-packages/mmtbx/command_line/ramalyze.py usr/lib/python3.15/dist-packages/mmtbx/command_line/rank_scale_map.py usr/lib/python3.15/dist-packages/mmtbx/command_line/real_space_correlation.py usr/lib/python3.15/dist-packages/mmtbx/command_line/real_space_diff_map.py usr/lib/python3.15/dist-packages/mmtbx/command_line/rebuild_cablam_cache.py usr/lib/python3.15/dist-packages/mmtbx/command_line/rebuild_rotarama_cache.py usr/lib/python3.15/dist-packages/mmtbx/command_line/reciprocal_space_arrays.py usr/lib/python3.15/dist-packages/mmtbx/command_line/reduce2.py usr/lib/python3.15/dist-packages/mmtbx/command_line/reduce_cryoem_resolution.py usr/lib/python3.15/dist-packages/mmtbx/command_line/refine_anomalous_substructure.py usr/lib/python3.15/dist-packages/mmtbx/command_line/remove_outliers.py usr/lib/python3.15/dist-packages/mmtbx/command_line/ribbons.py usr/lib/python3.15/dist-packages/mmtbx/command_line/rigid_bond_test.py usr/lib/python3.15/dist-packages/mmtbx/command_line/ringer.py usr/lib/python3.15/dist-packages/mmtbx/command_line/rna_validate.py usr/lib/python3.15/dist-packages/mmtbx/command_line/rna_validate_bonds.py usr/lib/python3.15/dist-packages/mmtbx/command_line/rna_validate_puckers.py usr/lib/python3.15/dist-packages/mmtbx/command_line/rna_validate_suites.py usr/lib/python3.15/dist-packages/mmtbx/command_line/rotalyze.py usr/lib/python3.15/dist-packages/mmtbx/command_line/search_pdb_symmetry.py usr/lib/python3.15/dist-packages/mmtbx/command_line/secondary_structure_restraints.py usr/lib/python3.15/dist-packages/mmtbx/command_line/secondary_structure_validation.py usr/lib/python3.15/dist-packages/mmtbx/command_line/select_best_starting_model.py usr/lib/python3.15/dist-packages/mmtbx/command_line/show_r_factors_by_shell.py usr/lib/python3.15/dist-packages/mmtbx/command_line/sisa.py usr/lib/python3.15/dist-packages/mmtbx/command_line/sort_hetatms.py usr/lib/python3.15/dist-packages/mmtbx/command_line/ss_idealization.py usr/lib/python3.15/dist-packages/mmtbx/command_line/suitename.py usr/lib/python3.15/dist-packages/mmtbx/command_line/suitename_old.py usr/lib/python3.15/dist-packages/mmtbx/command_line/super.py usr/lib/python3.15/dist-packages/mmtbx/command_line/superpose.py usr/lib/python3.15/dist-packages/mmtbx/command_line/taam_minus_iam.py usr/lib/python3.15/dist-packages/mmtbx/command_line/table_one.py usr/lib/python3.15/dist-packages/mmtbx/command_line/tls.py usr/lib/python3.15/dist-packages/mmtbx/command_line/tls_analysis.py usr/lib/python3.15/dist-packages/mmtbx/command_line/tls_as_xyz.py usr/lib/python3.15/dist-packages/mmtbx/command_line/undowser.py usr/lib/python3.15/dist-packages/mmtbx/command_line/undowser2.py usr/lib/python3.15/dist-packages/mmtbx/command_line/validate_H_cl_app.py usr/lib/python3.15/dist-packages/mmtbx/command_line/validate_ligands.py usr/lib/python3.15/dist-packages/mmtbx/command_line/validation_summary.py usr/lib/python3.15/dist-packages/mmtbx/command_line/verify_mon_lib_data.py usr/lib/python3.15/dist-packages/mmtbx/command_line/water_b_factors.py usr/lib/python3.15/dist-packages/mmtbx/command_line/where_is_that_cif_file.py usr/lib/python3.15/dist-packages/mmtbx/command_line/xmanip.py usr/lib/python3.15/dist-packages/mmtbx/command_line/xtrapol8.py usr/lib/python3.15/dist-packages/mmtbx/command_line/xtriage.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/ usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/LinkedResidues.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/__init__.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/altloc_weighting.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/bond_angle_registry.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/cdl_database.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/cdl_setup.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/cdl_svl_database.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/cdl_utils.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/check_cdl_database.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/density_dependent_restraints.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/enol_peptide_restraints.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/histidines.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/hpdl_database.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/hydrogen_bonding.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/investigate_rotamer_space.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/mcl.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/mcl_sf4_coordination.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/metal_coordination_library.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/multi_base_class.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/multi_residue_cdl_class.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/multi_residue_class.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/nucleotides.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/omega.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/omega_database.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/pH_dependent_restraints.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/rdl_database.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/rotamers.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/sf4_restraints.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/testing_utils.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/tst_cdl.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/tst_cdl_esd.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/tst_enol_peptide.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/tst_hpdl.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_01.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_02.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/tst_mcl_03.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/tst_multi_residue_rna.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/tst_mutli_residue.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/tst_omega_cdl.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/tst_pH_mechanism.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/tst_rdl.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py usr/lib/python3.15/dist-packages/mmtbx/conformation_dependent_library/utils.py usr/lib/python3.15/dist-packages/mmtbx/den/ usr/lib/python3.15/dist-packages/mmtbx/den/__init__.py usr/lib/python3.15/dist-packages/mmtbx/den/plot_weights.py usr/lib/python3.15/dist-packages/mmtbx/den/refinement.py usr/lib/python3.15/dist-packages/mmtbx/density_modification/ usr/lib/python3.15/dist-packages/mmtbx/density_modification/__init__.py usr/lib/python3.15/dist-packages/mmtbx/density_modification/tst_density_modification.py usr/lib/python3.15/dist-packages/mmtbx/disorder/ usr/lib/python3.15/dist-packages/mmtbx/disorder/__init__.py usr/lib/python3.15/dist-packages/mmtbx/disorder/analyze_model.py usr/lib/python3.15/dist-packages/mmtbx/disorder/backbone.py usr/lib/python3.15/dist-packages/mmtbx/disorder/tst.py usr/lib/python3.15/dist-packages/mmtbx/disorder/tst_analyze_model.py usr/lib/python3.15/dist-packages/mmtbx/disorder/tst_backbone.py usr/lib/python3.15/dist-packages/mmtbx/dynamics/ usr/lib/python3.15/dist-packages/mmtbx/dynamics/__init__.py usr/lib/python3.15/dist-packages/mmtbx/dynamics/cartesian_dynamics.py usr/lib/python3.15/dist-packages/mmtbx/dynamics/constants.py usr/lib/python3.15/dist-packages/mmtbx/dynamics/ensemble_cd.py usr/lib/python3.15/dist-packages/mmtbx/dynamics/simulated_annealing.py usr/lib/python3.15/dist-packages/mmtbx/dynamics/tst_cartesian_dynamics.py usr/lib/python3.15/dist-packages/mmtbx/dynamics/tst_sa.py usr/lib/python3.15/dist-packages/mmtbx/f_model/ usr/lib/python3.15/dist-packages/mmtbx/f_model/__init__.py usr/lib/python3.15/dist-packages/mmtbx/f_model/f_model.py usr/lib/python3.15/dist-packages/mmtbx/f_model/f_model_info.py usr/lib/python3.15/dist-packages/mmtbx/geometry/ usr/lib/python3.15/dist-packages/mmtbx/geometry/__init__.py usr/lib/python3.15/dist-packages/mmtbx/geometry/altloc.py usr/lib/python3.15/dist-packages/mmtbx/geometry/asa.py usr/lib/python3.15/dist-packages/mmtbx/geometry/clash.py usr/lib/python3.15/dist-packages/mmtbx/geometry/indexing.py usr/lib/python3.15/dist-packages/mmtbx/geometry/shared_types.py usr/lib/python3.15/dist-packages/mmtbx/geometry/sphere_surface_sampling.py usr/lib/python3.15/dist-packages/mmtbx/geometry/topology.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/ usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/__init__.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/afitt.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/base_qm_manager.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/c_beta.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/external.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/geo_file_parsing.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/mopac_manager.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/orca_manager.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/qi_utils.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/qm_manager.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/quantum_interface.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/quantum_restraints_manager.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/ramachandran.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/reference.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/tst_c_beta_restraints.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/tst_geo_file_parsing.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/tst_manager.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/tst_orca_manager.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/tst_ramachandran.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/tst_reference_coordinate.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/tst_reference_coordinate2.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/tst_replace_in_place.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/tst_xtb_manager.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/xtb_manager.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/torsion_restraints/ usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/torsion_restraints/__init__.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/torsion_restraints/reference_model.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/torsion_restraints/rotamer_search.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/torsion_restraints/torsion_ncs.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_hbond.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_reference_ramachandran.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_ter_records.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py usr/lib/python3.15/dist-packages/mmtbx/geometry_restraints/torsion_restraints/utils.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/ usr/lib/python3.15/dist-packages/mmtbx/hydrogens/__init__.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/build_hydrogens.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/connectivity.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/neutron_utils.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/parameterization.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/reduce_hydrogen.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/riding.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/specialised_hydrogen_atoms.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_add_hydrogen.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_1.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_10.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_11.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_12.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_13.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_14.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_15.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_16.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_2.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_3.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_4.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_5.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_6.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_7.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_8.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_9.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_add_hydrogen_time.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_connectivity.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_const_dihedral.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_parameterization_1.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_parameterization_2.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_parameterization_3.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_parameterization_4.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_parameterization_5.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_parameterization_6.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_parameterization_7.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_parameterization_8.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_parameterization_9.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_riding_coefficients.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_riding_fd_1.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_riding_fd_2.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_riding_fd_3.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_riding_fd_4.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_riding_fd_5.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_riding_manager.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_riding_minimize.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/tst_validate_H.py usr/lib/python3.15/dist-packages/mmtbx/hydrogens/validate_H.py usr/lib/python3.15/dist-packages/mmtbx/ias/ usr/lib/python3.15/dist-packages/mmtbx/ias/__init__.py usr/lib/python3.15/dist-packages/mmtbx/ias/tst_ias.py usr/lib/python3.15/dist-packages/mmtbx/idealized_aa_residues/ usr/lib/python3.15/dist-packages/mmtbx/idealized_aa_residues/__init__.py usr/lib/python3.15/dist-packages/mmtbx/idealized_aa_residues/all_his.py usr/lib/python3.15/dist-packages/mmtbx/idealized_aa_residues/rotamer_manager.py usr/lib/python3.15/dist-packages/mmtbx/idealized_aa_residues/sample_rotamers.py usr/lib/python3.15/dist-packages/mmtbx/idealized_aa_residues/tst.py usr/lib/python3.15/dist-packages/mmtbx/ions/ usr/lib/python3.15/dist-packages/mmtbx/ions/__init__.py usr/lib/python3.15/dist-packages/mmtbx/ions/build.py usr/lib/python3.15/dist-packages/mmtbx/ions/environment.py usr/lib/python3.15/dist-packages/mmtbx/ions/geometry.py usr/lib/python3.15/dist-packages/mmtbx/ions/halides.py usr/lib/python3.15/dist-packages/mmtbx/ions/identify.py usr/lib/python3.15/dist-packages/mmtbx/ions/tst_environment.py usr/lib/python3.15/dist-packages/mmtbx/ions/tst_geometries.py usr/lib/python3.15/dist-packages/mmtbx/ions/tst_parameters.py usr/lib/python3.15/dist-packages/mmtbx/ions/tst_pick_approx_zn.py usr/lib/python3.15/dist-packages/mmtbx/ions/tst_pick_ca.py usr/lib/python3.15/dist-packages/mmtbx/ions/tst_pick_ca_svm.py usr/lib/python3.15/dist-packages/mmtbx/ions/tst_pick_k.py usr/lib/python3.15/dist-packages/mmtbx/ions/tst_pick_mg.py usr/lib/python3.15/dist-packages/mmtbx/ions/tst_pickle.py usr/lib/python3.15/dist-packages/mmtbx/ions/tst_symmetry_axis.py usr/lib/python3.15/dist-packages/mmtbx/ions/tst_utils.py usr/lib/python3.15/dist-packages/mmtbx/ions/tst_validate_ca.py usr/lib/python3.15/dist-packages/mmtbx/ions/tst_validate_mg.py usr/lib/python3.15/dist-packages/mmtbx/ions/utils.py usr/lib/python3.15/dist-packages/mmtbx/ions/svm/ usr/lib/python3.15/dist-packages/mmtbx/ions/svm/__init__.py usr/lib/python3.15/dist-packages/mmtbx/ions/svm/dump_sites.py usr/lib/python3.15/dist-packages/mmtbx/ions/svm/tst_classifier_01.py usr/lib/python3.15/dist-packages/mmtbx/ions/svm/tst_classifier_02.py usr/lib/python3.15/dist-packages/mmtbx/ions/svm/utils.py usr/lib/python3.15/dist-packages/mmtbx/kinemage/ usr/lib/python3.15/dist-packages/mmtbx/kinemage/__init__.py usr/lib/python3.15/dist-packages/mmtbx/kinemage/nrubs.py usr/lib/python3.15/dist-packages/mmtbx/kinemage/ribbon_rendering.py usr/lib/python3.15/dist-packages/mmtbx/kinemage/ribbons.py usr/lib/python3.15/dist-packages/mmtbx/kinemage/tst_validation.py usr/lib/python3.15/dist-packages/mmtbx/kinemage/validation.py usr/lib/python3.15/dist-packages/mmtbx/ligands/ usr/lib/python3.15/dist-packages/mmtbx/ligands/__init__.py usr/lib/python3.15/dist-packages/mmtbx/ligands/chemistry.py usr/lib/python3.15/dist-packages/mmtbx/ligands/electrons.py usr/lib/python3.15/dist-packages/mmtbx/ligands/hierarchy_utils.py usr/lib/python3.15/dist-packages/mmtbx/ligands/rdkit_utils.py usr/lib/python3.15/dist-packages/mmtbx/ligands/ready_set_basics.py usr/lib/python3.15/dist-packages/mmtbx/ligands/ready_set_utils.py usr/lib/python3.15/dist-packages/mmtbx/ligands/tst_electron_scripting.py usr/lib/python3.15/dist-packages/mmtbx/ligands/tst_ready_set_utils.py usr/lib/python3.15/dist-packages/mmtbx/ligands/tst_xtal_screens.py usr/lib/python3.15/dist-packages/mmtbx/ligands/xtal_screens.py usr/lib/python3.15/dist-packages/mmtbx/maps/ usr/lib/python3.15/dist-packages/mmtbx/maps/__init__.py usr/lib/python3.15/dist-packages/mmtbx/maps/composite_omit_map.py usr/lib/python3.15/dist-packages/mmtbx/maps/correlation.py usr/lib/python3.15/dist-packages/mmtbx/maps/fem.py usr/lib/python3.15/dist-packages/mmtbx/maps/fobs_minus_fobs_map.py usr/lib/python3.15/dist-packages/mmtbx/maps/kick.py usr/lib/python3.15/dist-packages/mmtbx/maps/map_model_cc.py usr/lib/python3.15/dist-packages/mmtbx/maps/mtriage.py usr/lib/python3.15/dist-packages/mmtbx/maps/polder.py usr/lib/python3.15/dist-packages/mmtbx/maps/superpose.py usr/lib/python3.15/dist-packages/mmtbx/maps/tst_composite_omit_map.py usr/lib/python3.15/dist-packages/mmtbx/maps/tst_composite_omit_map_2.py usr/lib/python3.15/dist-packages/mmtbx/maps/tst_composite_omit_map_3.py usr/lib/python3.15/dist-packages/mmtbx/maps/tst_correlation.py usr/lib/python3.15/dist-packages/mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py usr/lib/python3.15/dist-packages/mmtbx/maps/utils.py usr/lib/python3.15/dist-packages/mmtbx/maps/xtrapol8.py usr/lib/python3.15/dist-packages/mmtbx/masks/ usr/lib/python3.15/dist-packages/mmtbx/masks/__init__.py usr/lib/python3.15/dist-packages/mmtbx/masks/tst_asu_mask.py usr/lib/python3.15/dist-packages/mmtbx/masks/tst_masks.py usr/lib/python3.15/dist-packages/mmtbx/max_lik/ usr/lib/python3.15/dist-packages/mmtbx/max_lik/__init__.py usr/lib/python3.15/dist-packages/mmtbx/max_lik/max_like_non_uniform.py usr/lib/python3.15/dist-packages/mmtbx/max_lik/maxlik.py usr/lib/python3.15/dist-packages/mmtbx/max_lik/tst_max_lik.py usr/lib/python3.15/dist-packages/mmtbx/max_lik/tst_maxlik.py usr/lib/python3.15/dist-packages/mmtbx/model/ usr/lib/python3.15/dist-packages/mmtbx/model/__init__.py usr/lib/python3.15/dist-packages/mmtbx/model/model.py usr/lib/python3.15/dist-packages/mmtbx/model/restraints.py usr/lib/python3.15/dist-packages/mmtbx/model/statistics.py usr/lib/python3.15/dist-packages/mmtbx/model/utils.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/ usr/lib/python3.15/dist-packages/mmtbx/monomer_library/__init__.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/bondlength_defaults.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/cif_triage.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/cif_types.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/conformation_dependent_restraints.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/conv_v2_v3.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/correct_hydrogen_geometries.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/geostd_utils.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/glyco_chiral_values.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/glyco_utils.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/hydrogen_restrictions.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/idealized_aa.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/linking_mixins.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/linking_setup.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/linking_utils.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/mmtbx_utils.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/pdb_interpretation.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/populate_auto_linking_origin_ids.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/rna_sugar_pucker_analysis.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/rotamer_utils.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/server.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_all_cif_files.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_carbo_linking.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_chg.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_cif_triage.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_cif_types.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_correct_hydrogens.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_deuterium_terminii.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_geo_reduce_for_tardy.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_glyco_coordination.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_glyco_hand.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_idealized_aa.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_iron_sulfur_clusters.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_linking.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_metal_coordination.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_motif.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_neutron_distance.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_paral_geo.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_2.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_3.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_4.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_5.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_protein_interpretation.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_rna_dna_interpretation.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_rotamer_utils.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_selection.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_server.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_superpose_ideal.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py usr/lib/python3.15/dist-packages/mmtbx/monomer_library/tst_user_supplied_library.py usr/lib/python3.15/dist-packages/mmtbx/nci/ usr/lib/python3.15/dist-packages/mmtbx/nci/__init__.py usr/lib/python3.15/dist-packages/mmtbx/nci/data_filtering.py usr/lib/python3.15/dist-packages/mmtbx/nci/hbond.py usr/lib/python3.15/dist-packages/mmtbx/nci/skew_kurt_plot.py usr/lib/python3.15/dist-packages/mmtbx/nci/tst_hbond.py usr/lib/python3.15/dist-packages/mmtbx/ncs/ usr/lib/python3.15/dist-packages/mmtbx/ncs/__init__.py usr/lib/python3.15/dist-packages/mmtbx/ncs/cartesian_restraints.py usr/lib/python3.15/dist-packages/mmtbx/ncs/ligands.py usr/lib/python3.15/dist-packages/mmtbx/ncs/ncs.py usr/lib/python3.15/dist-packages/mmtbx/ncs/ncs_params.py usr/lib/python3.15/dist-packages/mmtbx/ncs/ncs_restraints_group_list.py usr/lib/python3.15/dist-packages/mmtbx/ncs/ncs_search.py usr/lib/python3.15/dist-packages/mmtbx/ncs/ncs_utils.py usr/lib/python3.15/dist-packages/mmtbx/ncs/tncs.py usr/lib/python3.15/dist-packages/mmtbx/pair_interaction/ usr/lib/python3.15/dist-packages/mmtbx/pair_interaction/__init__.py usr/lib/python3.15/dist-packages/mmtbx/pair_interaction/pair_interaction.py usr/lib/python3.15/dist-packages/mmtbx/pair_interaction/tst_00.py usr/lib/python3.15/dist-packages/mmtbx/pair_interaction/tst_01.py usr/lib/python3.15/dist-packages/mmtbx/pair_interaction/tst_02.py usr/lib/python3.15/dist-packages/mmtbx/pair_interaction/tst_03.py usr/lib/python3.15/dist-packages/mmtbx/pair_interaction/tst_04.py usr/lib/python3.15/dist-packages/mmtbx/pair_interaction/tst_05.py usr/lib/python3.15/dist-packages/mmtbx/polygon/ usr/lib/python3.15/dist-packages/mmtbx/polygon/__init__.py usr/lib/python3.15/dist-packages/mmtbx/polygon/output.py usr/lib/python3.15/dist-packages/mmtbx/polygon/tst.py usr/lib/python3.15/dist-packages/mmtbx/polygon/tst_gui.py usr/lib/python3.15/dist-packages/mmtbx/polygon/tst_polygon_data.py usr/lib/python3.15/dist-packages/mmtbx/probe/ usr/lib/python3.15/dist-packages/mmtbx/probe/AtomTypes.py usr/lib/python3.15/dist-packages/mmtbx/probe/CompareOriginalAndNewProbeAtomInfo.py usr/lib/python3.15/dist-packages/mmtbx/probe/Helpers.py usr/lib/python3.15/dist-packages/mmtbx/probe/__init__.py usr/lib/python3.15/dist-packages/mmtbx/probe/tst_mmtbx_probe_ext.py usr/lib/python3.15/dist-packages/mmtbx/programs/ usr/lib/python3.15/dist-packages/mmtbx/programs/__init__.py usr/lib/python3.15/dist-packages/mmtbx/programs/arginine_geometry.py usr/lib/python3.15/dist-packages/mmtbx/programs/atom_selection.py usr/lib/python3.15/dist-packages/mmtbx/programs/atom_valence_simple.py usr/lib/python3.15/dist-packages/mmtbx/programs/barbed_wire_analysis.py usr/lib/python3.15/dist-packages/mmtbx/programs/cablam.py usr/lib/python3.15/dist-packages/mmtbx/programs/cablam_idealization.py usr/lib/python3.15/dist-packages/mmtbx/programs/cbetadev.py usr/lib/python3.15/dist-packages/mmtbx/programs/chiral_validation.py usr/lib/python3.15/dist-packages/mmtbx/programs/clashscore.py usr/lib/python3.15/dist-packages/mmtbx/programs/clashscore2.py usr/lib/python3.15/dist-packages/mmtbx/programs/comparama.py usr/lib/python3.15/dist-packages/mmtbx/programs/debug_riding.py usr/lib/python3.15/dist-packages/mmtbx/programs/elbow_services.py usr/lib/python3.15/dist-packages/mmtbx/programs/emringer.py usr/lib/python3.15/dist-packages/mmtbx/programs/fetch.py usr/lib/python3.15/dist-packages/mmtbx/programs/fmodel.py usr/lib/python3.15/dist-packages/mmtbx/programs/hbond.py usr/lib/python3.15/dist-packages/mmtbx/programs/holton_geometry_validation.py usr/lib/python3.15/dist-packages/mmtbx/programs/hydrogenate.py usr/lib/python3.15/dist-packages/mmtbx/programs/ligand_restraints_validation.py usr/lib/python3.15/dist-packages/mmtbx/programs/mask.py usr/lib/python3.15/dist-packages/mmtbx/programs/matthews.py usr/lib/python3.15/dist-packages/mmtbx/programs/model_vs_sequence.py usr/lib/python3.15/dist-packages/mmtbx/programs/mp_validate_bonds.py usr/lib/python3.15/dist-packages/mmtbx/programs/next_gen_atom_typing.py usr/lib/python3.15/dist-packages/mmtbx/programs/next_gen_residue_typing.py usr/lib/python3.15/dist-packages/mmtbx/programs/nonbonded_overlaps.py usr/lib/python3.15/dist-packages/mmtbx/programs/omegalyze.py usr/lib/python3.15/dist-packages/mmtbx/programs/pdb_as_cif.py usr/lib/python3.15/dist-packages/mmtbx/programs/pdbtools.py usr/lib/python3.15/dist-packages/mmtbx/programs/polder.py usr/lib/python3.15/dist-packages/mmtbx/programs/prepare_pdb_deposition.py usr/lib/python3.15/dist-packages/mmtbx/programs/probe2.py usr/lib/python3.15/dist-packages/mmtbx/programs/probescore_ligand.py usr/lib/python3.15/dist-packages/mmtbx/programs/process_predicted_model.py usr/lib/python3.15/dist-packages/mmtbx/programs/quantum_interface.py usr/lib/python3.15/dist-packages/mmtbx/programs/rama_z.py usr/lib/python3.15/dist-packages/mmtbx/programs/ramalyze.py usr/lib/python3.15/dist-packages/mmtbx/programs/real_space_correlation.py usr/lib/python3.15/dist-packages/mmtbx/programs/reduce2.py usr/lib/python3.15/dist-packages/mmtbx/programs/reduce_cryoem_resolution.py usr/lib/python3.15/dist-packages/mmtbx/programs/ribbons.py usr/lib/python3.15/dist-packages/mmtbx/programs/rna_validate.py usr/lib/python3.15/dist-packages/mmtbx/programs/rna_validate_bonds.py usr/lib/python3.15/dist-packages/mmtbx/programs/rna_validate_puckers.py usr/lib/python3.15/dist-packages/mmtbx/programs/rna_validate_suites.py usr/lib/python3.15/dist-packages/mmtbx/programs/rotalyze.py usr/lib/python3.15/dist-packages/mmtbx/programs/ss_idealization.py usr/lib/python3.15/dist-packages/mmtbx/programs/ss_validation.py usr/lib/python3.15/dist-packages/mmtbx/programs/suitename.py usr/lib/python3.15/dist-packages/mmtbx/programs/suitename_old.py usr/lib/python3.15/dist-packages/mmtbx/programs/taam_minus_iam.py usr/lib/python3.15/dist-packages/mmtbx/programs/undowser.py usr/lib/python3.15/dist-packages/mmtbx/programs/undowser2.py usr/lib/python3.15/dist-packages/mmtbx/programs/validate_ligands.py usr/lib/python3.15/dist-packages/mmtbx/programs/water_b_factors.py usr/lib/python3.15/dist-packages/mmtbx/programs/xtrapol8.py usr/lib/python3.15/dist-packages/mmtbx/real_space/ usr/lib/python3.15/dist-packages/mmtbx/real_space/__init__.py usr/lib/python3.15/dist-packages/mmtbx/real_space/tst.py usr/lib/python3.15/dist-packages/mmtbx/reduce/ usr/lib/python3.15/dist-packages/mmtbx/reduce/InteractionGraph.py usr/lib/python3.15/dist-packages/mmtbx/reduce/Movers.py usr/lib/python3.15/dist-packages/mmtbx/reduce/Optimizers.py usr/lib/python3.15/dist-packages/mmtbx/reduce/__init__.py usr/lib/python3.15/dist-packages/mmtbx/reduce/tst_mmtbx_reduce_ext.py usr/lib/python3.15/dist-packages/mmtbx/refinement/ usr/lib/python3.15/dist-packages/mmtbx/refinement/__init__.py usr/lib/python3.15/dist-packages/mmtbx/refinement/adp_refinement.py usr/lib/python3.15/dist-packages/mmtbx/refinement/anomalous_scatterer_groups.py usr/lib/python3.15/dist-packages/mmtbx/refinement/calculators.py usr/lib/python3.15/dist-packages/mmtbx/refinement/data.py usr/lib/python3.15/dist-packages/mmtbx/refinement/energy_monitor.py usr/lib/python3.15/dist-packages/mmtbx/refinement/flip_peptide_side_chain.py usr/lib/python3.15/dist-packages/mmtbx/refinement/geometry_minimization.py usr/lib/python3.15/dist-packages/mmtbx/refinement/group.py usr/lib/python3.15/dist-packages/mmtbx/refinement/inspect_tardy_trajectory.py usr/lib/python3.15/dist-packages/mmtbx/refinement/minimization.py usr/lib/python3.15/dist-packages/mmtbx/refinement/minimization_monitor.py usr/lib/python3.15/dist-packages/mmtbx/refinement/minimization_ncs_constraints.py usr/lib/python3.15/dist-packages/mmtbx/refinement/occupancies.py usr/lib/python3.15/dist-packages/mmtbx/refinement/orca.py usr/lib/python3.15/dist-packages/mmtbx/refinement/print_statistics.py usr/lib/python3.15/dist-packages/mmtbx/refinement/refinement_flags.py usr/lib/python3.15/dist-packages/mmtbx/refinement/restraints.py usr/lib/python3.15/dist-packages/mmtbx/refinement/rigid_body.py usr/lib/python3.15/dist-packages/mmtbx/refinement/select_best_starting_model.py usr/lib/python3.15/dist-packages/mmtbx/refinement/tardy.py usr/lib/python3.15/dist-packages/mmtbx/refinement/targets.py usr/lib/python3.15/dist-packages/mmtbx/refinement/tst_anomalous_scatterer_groups.py usr/lib/python3.15/dist-packages/mmtbx/refinement/tst_fit_rotamers.py usr/lib/python3.15/dist-packages/mmtbx/refinement/tst_group.py usr/lib/python3.15/dist-packages/mmtbx/refinement/tst_group_2.py usr/lib/python3.15/dist-packages/mmtbx/refinement/tst_misc.py usr/lib/python3.15/dist-packages/mmtbx/refinement/tst_occupancy_selections.py usr/lib/python3.15/dist-packages/mmtbx/refinement/tst_real_space_simple.py usr/lib/python3.15/dist-packages/mmtbx/refinement/tst_refinement_flags.py usr/lib/python3.15/dist-packages/mmtbx/refinement/tst_rigid_body.py usr/lib/python3.15/dist-packages/mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py usr/lib/python3.15/dist-packages/mmtbx/refinement/tst_select_best_starting_model.py usr/lib/python3.15/dist-packages/mmtbx/refinement/utils.py usr/lib/python3.15/dist-packages/mmtbx/refinement/weights.py usr/lib/python3.15/dist-packages/mmtbx/refinement/weights_params.py usr/lib/python3.15/dist-packages/mmtbx/refinement/wrappers.py usr/lib/python3.15/dist-packages/mmtbx/refinement/ensemble_refinement/ usr/lib/python3.15/dist-packages/mmtbx/refinement/ensemble_refinement/__init__.py usr/lib/python3.15/dist-packages/mmtbx/refinement/ensemble_refinement/ensemble_probability.py usr/lib/python3.15/dist-packages/mmtbx/refinement/ensemble_refinement/ensemble_utils.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/ usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/__init__.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/adp.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/explode_and_refine.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/fit_his.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/fit_residue.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/fit_residues.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/fit_small_molecule.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/fit_water.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/individual_sites.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/occupancy.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/rigid_body.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_0.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_0H.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_1.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_1H.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_2.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_3.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_4.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_5.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_6.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_7.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_1.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_1H.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_2.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_3.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_4.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_5.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_6.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_fit_residues_selection.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_fit_water.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_1.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_2.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_individual_sites_3.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_monitor.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_rigid_body.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/tst_weight.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/utils.py usr/lib/python3.15/dist-packages/mmtbx/refinement/real_space/weight.py usr/lib/python3.15/dist-packages/mmtbx/regression/ usr/lib/python3.15/dist-packages/mmtbx/regression/__init__.py usr/lib/python3.15/dist-packages/mmtbx/regression/make_fake_anomalous_data.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_add_arrows_on_plot.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_add_h_to_water.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_adp_restraints.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_alignment.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_altloc_chain_break.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_altloc_remediate.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_angle.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_anomalous_substructure.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_apply_cif_restraints.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_arginine_geometry.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_cc_star.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_chain_comparison.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_chain_comparison_cif.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_cif_as_mtz_wavelengths.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_cis_trans_peptide_link.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_clashes.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_command_line_input.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_domains_from_pae.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_domains_from_pae_cif.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_dynamics_cli.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_examples.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_find_ncs.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_find_ss_structure.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_find_ss_structure_cif.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_flipping_his.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_fmodel.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_fmodel_2.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_fmodel_and_dm.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_fmodel_fd.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_fmodel_misc.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_fmodel_no_cryst1.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_geo_min_restraints_phil.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_geometry_minimization.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_holton_geometry_validation.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_isomorphous_difference_misc.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_ligand_interactions.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_ligand_ncs.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_loop_closure.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_lrv.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_map_model_cc.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_map_type_parser.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_maps_misc.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_metal_link_1.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_minimize_chain.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_ml_estimate.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_mmtbx_refinement_wrappers.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_model_map.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_model_vs_map.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_model_vs_sequence.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_models_to_from_chains.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_msa.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_mtz2map.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_multi_residue_class.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_ordered_solvent.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_origin_ids.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_pdbtools.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_polder.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_polder_1.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_polder_2.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_polder_3.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_polder_4.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_polder_box.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_polder_ccs.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_probe.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_process_predicted_model.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_process_predicted_model_cif.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_prune_model.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_psi_phi_extraction.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_rank_scale_map.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_rdkit_utils_fragmentation.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_rdkit_utils_molecule.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_real_space_correlation.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_reduce.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_reduce2_no_symmetry.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_reduce_cryoem_resolution.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_reduce_custom_bond.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_reduce_switch.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_reduce_timeout.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_refine_anomalous_substructure.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_regularize_from_pdb.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_regularize_from_pdb_cif.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_ribbons.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_rigid_bond_test.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_ringer.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_sampled_model_density.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_scattering_table.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_scattering_type_registry.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_schrodinger_interface.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_sequence_validation.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_sort_hetatms.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_special_term_at_end.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_ss_validation_long_chainids.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_statistics_output.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_superpose.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_table_one.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_utils.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_validate_ligands.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_validate_ligands_2.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_validate_ligands_3.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_validate_ligands_4.py usr/lib/python3.15/dist-packages/mmtbx/regression/tst_validation_summary.py usr/lib/python3.15/dist-packages/mmtbx/regression/model/ usr/lib/python3.15/dist-packages/mmtbx/regression/model/__init__.py usr/lib/python3.15/dist-packages/mmtbx/regression/model/tst_model.py usr/lib/python3.15/dist-packages/mmtbx/regression/model/tst_model_2.py usr/lib/python3.15/dist-packages/mmtbx/regression/model/tst_model_biomt_mtrix.py usr/lib/python3.15/dist-packages/mmtbx/regression/model/tst_model_biomt_mtrix_2.py usr/lib/python3.15/dist-packages/mmtbx/regression/model/tst_model_cart_ref_restraints.py usr/lib/python3.15/dist-packages/mmtbx/regression/model/tst_model_dedeuterate.py usr/lib/python3.15/dist-packages/mmtbx/regression/model/tst_model_get_vdw_radii.py usr/lib/python3.15/dist-packages/mmtbx/regression/model/tst_model_merge.py usr/lib/python3.15/dist-packages/mmtbx/regression/model/tst_model_mtrix.py usr/lib/python3.15/dist-packages/mmtbx/regression/model/tst_model_ncs.py usr/lib/python3.15/dist-packages/mmtbx/regression/model/tst_model_neutralize_scatterers.py usr/lib/python3.15/dist-packages/mmtbx/regression/model/tst_model_pairs_within.py usr/lib/python3.15/dist-packages/mmtbx/regression/model/tst_model_ramachandran.py usr/lib/python3.15/dist-packages/mmtbx/regression/model/tst_model_remove_alternative_conformations.py usr/lib/python3.15/dist-packages/mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py usr/lib/python3.15/dist-packages/mmtbx/regression/model/tst_model_symmetry.py usr/lib/python3.15/dist-packages/mmtbx/regression/model/tst_model_tors_ref_restraints.py usr/lib/python3.15/dist-packages/mmtbx/regression/model/tst_model_utils_merge_models.py usr/lib/python3.15/dist-packages/mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py usr/lib/python3.15/dist-packages/mmtbx/regression/ncs/ usr/lib/python3.15/dist-packages/mmtbx/regression/ncs/__init__.py usr/lib/python3.15/dist-packages/mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py usr/lib/python3.15/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints.py usr/lib/python3.15/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py usr/lib/python3.15/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py usr/lib/python3.15/dist-packages/mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py usr/lib/python3.15/dist-packages/mmtbx/regression/ncs/tst_ncs_restraints_group_list.py usr/lib/python3.15/dist-packages/mmtbx/regression/ncs/tst_ncs_search.py usr/lib/python3.15/dist-packages/mmtbx/regression/ncs/tst_ncs_search_flips.py usr/lib/python3.15/dist-packages/mmtbx/regression/ncs/tst_ncs_utils.py usr/lib/python3.15/dist-packages/mmtbx/regression/ncs/tst_restraints.py usr/lib/python3.15/dist-packages/mmtbx/regression/tls/ usr/lib/python3.15/dist-packages/mmtbx/regression/tls/__init__.py usr/lib/python3.15/dist-packages/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py usr/lib/python3.15/dist-packages/mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py usr/lib/python3.15/dist-packages/mmtbx/regression/tls/tst_get_t_scheme.py usr/lib/python3.15/dist-packages/mmtbx/regression/tls/tst_tls.py usr/lib/python3.15/dist-packages/mmtbx/regression/tls/tst_tls_analysis.py usr/lib/python3.15/dist-packages/mmtbx/regression/tls/tst_tls_as_xyz.py usr/lib/python3.15/dist-packages/mmtbx/regression/tls/tst_tls_optimise_amplitudes.py usr/lib/python3.15/dist-packages/mmtbx/regression/tls/tst_tls_refinement_fft.py usr/lib/python3.15/dist-packages/mmtbx/regression/tls/tst_tls_utils.py usr/lib/python3.15/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py usr/lib/python3.15/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py usr/lib/python3.15/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py usr/lib/python3.15/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py usr/lib/python3.15/dist-packages/mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py usr/lib/python3.15/dist-packages/mmtbx/ringer/ usr/lib/python3.15/dist-packages/mmtbx/ringer/__init__.py usr/lib/python3.15/dist-packages/mmtbx/ringer/em_rolling.py usr/lib/python3.15/dist-packages/mmtbx/ringer/em_rscc.py usr/lib/python3.15/dist-packages/mmtbx/ringer/em_scoring.py usr/lib/python3.15/dist-packages/mmtbx/ringer/emringer.py usr/lib/python3.15/dist-packages/mmtbx/ringer/tst_em_rscc.py usr/lib/python3.15/dist-packages/mmtbx/ringer/tst_emringer.py usr/lib/python3.15/dist-packages/mmtbx/rotamer/ usr/lib/python3.15/dist-packages/mmtbx/rotamer/__init__.py usr/lib/python3.15/dist-packages/mmtbx/rotamer/graphics.py usr/lib/python3.15/dist-packages/mmtbx/rotamer/n_dim_table.py usr/lib/python3.15/dist-packages/mmtbx/rotamer/nqh.py usr/lib/python3.15/dist-packages/mmtbx/rotamer/ramachandran_eval.py usr/lib/python3.15/dist-packages/mmtbx/rotamer/ramachandran_eval_deprecated.py usr/lib/python3.15/dist-packages/mmtbx/rotamer/rotamer_eval.py usr/lib/python3.15/dist-packages/mmtbx/rotamer/sidechain_angles.py usr/lib/python3.15/dist-packages/mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py usr/lib/python3.15/dist-packages/mmtbx/rotamer/tst_rotamer_eval.py usr/lib/python3.15/dist-packages/mmtbx/rsr/ usr/lib/python3.15/dist-packages/mmtbx/rsr/__init__.py usr/lib/python3.15/dist-packages/mmtbx/rsr/tst.py usr/lib/python3.15/dist-packages/mmtbx/scaling/ usr/lib/python3.15/dist-packages/mmtbx/scaling/__init__.py usr/lib/python3.15/dist-packages/mmtbx/scaling/absence_likelihood.py usr/lib/python3.15/dist-packages/mmtbx/scaling/absences.py usr/lib/python3.15/dist-packages/mmtbx/scaling/absolute_scaling.py usr/lib/python3.15/dist-packages/mmtbx/scaling/basic_analyses.py usr/lib/python3.15/dist-packages/mmtbx/scaling/bayesian_estimator.py usr/lib/python3.15/dist-packages/mmtbx/scaling/data_statistics.py usr/lib/python3.15/dist-packages/mmtbx/scaling/fa_estimation.py usr/lib/python3.15/dist-packages/mmtbx/scaling/make_param.py usr/lib/python3.15/dist-packages/mmtbx/scaling/massage_twin_detwin_data.py usr/lib/python3.15/dist-packages/mmtbx/scaling/matthews.py usr/lib/python3.15/dist-packages/mmtbx/scaling/mean_f_rms_f.py usr/lib/python3.15/dist-packages/mmtbx/scaling/outlier_plots.py usr/lib/python3.15/dist-packages/mmtbx/scaling/outlier_rejection.py usr/lib/python3.15/dist-packages/mmtbx/scaling/pair_analyses.py usr/lib/python3.15/dist-packages/mmtbx/scaling/plan_sad_experiment.py usr/lib/python3.15/dist-packages/mmtbx/scaling/pre_scale.py usr/lib/python3.15/dist-packages/mmtbx/scaling/random_omit.py usr/lib/python3.15/dist-packages/mmtbx/scaling/relative_scaling.py usr/lib/python3.15/dist-packages/mmtbx/scaling/relative_wilson.py usr/lib/python3.15/dist-packages/mmtbx/scaling/remove_outliers.py usr/lib/python3.15/dist-packages/mmtbx/scaling/sigmaa_estimation.py usr/lib/python3.15/dist-packages/mmtbx/scaling/ta_alpha_beta_calc.py usr/lib/python3.15/dist-packages/mmtbx/scaling/thorough_outlier_test.py usr/lib/python3.15/dist-packages/mmtbx/scaling/tst_absences.py usr/lib/python3.15/dist-packages/mmtbx/scaling/tst_bayesian_estimator.py usr/lib/python3.15/dist-packages/mmtbx/scaling/tst_massage_data.py usr/lib/python3.15/dist-packages/mmtbx/scaling/tst_mean_f_rms_f.py usr/lib/python3.15/dist-packages/mmtbx/scaling/tst_outlier.py usr/lib/python3.15/dist-packages/mmtbx/scaling/tst_plan_sad_experiment.py usr/lib/python3.15/dist-packages/mmtbx/scaling/tst_scaling.py usr/lib/python3.15/dist-packages/mmtbx/scaling/tst_sigmaa.py usr/lib/python3.15/dist-packages/mmtbx/scaling/tst_xtriage.py usr/lib/python3.15/dist-packages/mmtbx/scaling/tst_xtriage_twin_analyses.py usr/lib/python3.15/dist-packages/mmtbx/scaling/twin_analyses.py usr/lib/python3.15/dist-packages/mmtbx/scaling/twmad_scale.py usr/lib/python3.15/dist-packages/mmtbx/scaling/xtriage.py usr/lib/python3.15/dist-packages/mmtbx/secondary_structure/ usr/lib/python3.15/dist-packages/mmtbx/secondary_structure/__init__.py usr/lib/python3.15/dist-packages/mmtbx/secondary_structure/find_ss_from_ca.py usr/lib/python3.15/dist-packages/mmtbx/secondary_structure/nucleic_acids.py usr/lib/python3.15/dist-packages/mmtbx/secondary_structure/proteins.py usr/lib/python3.15/dist-packages/mmtbx/secondary_structure/regularize_from_pdb.py usr/lib/python3.15/dist-packages/mmtbx/secondary_structure/secondary_structure_params.py usr/lib/python3.15/dist-packages/mmtbx/secondary_structure/ss_validation.py usr/lib/python3.15/dist-packages/mmtbx/secondary_structure/tst.py usr/lib/python3.15/dist-packages/mmtbx/secondary_structure/tst_insertion_codes.py usr/lib/python3.15/dist-packages/mmtbx/secondary_structure/tst_segid.py usr/lib/python3.15/dist-packages/mmtbx/secondary_structure/utils.py usr/lib/python3.15/dist-packages/mmtbx/secondary_structure/build/ usr/lib/python3.15/dist-packages/mmtbx/secondary_structure/build/__init__.py usr/lib/python3.15/dist-packages/mmtbx/secondary_structure/build/ss_idealization.py usr/lib/python3.15/dist-packages/mmtbx/secondary_structure/build/tst_1.py usr/lib/python3.15/dist-packages/mmtbx/secondary_structure/build/tst_2.py usr/lib/python3.15/dist-packages/mmtbx/secondary_structure/build/tst_3.py usr/lib/python3.15/dist-packages/mmtbx/secondary_structure/build/tst_io.py usr/lib/python3.15/dist-packages/mmtbx/secondary_structure/build/tst_ss_id_ncs.py usr/lib/python3.15/dist-packages/mmtbx/sisa/ usr/lib/python3.15/dist-packages/mmtbx/sisa/__init__.py usr/lib/python3.15/dist-packages/mmtbx/sisa/optimize/ usr/lib/python3.15/dist-packages/mmtbx/sisa/optimize/__init__.py usr/lib/python3.15/dist-packages/mmtbx/sisa/optimize/mod_ga.py usr/lib/python3.15/dist-packages/mmtbx/sisa/optimize/mod_input.py usr/lib/python3.15/dist-packages/mmtbx/sisa/optimize/mod_masks.py usr/lib/python3.15/dist-packages/mmtbx/sisa/optimize/mod_mtz.py usr/lib/python3.15/dist-packages/mmtbx/sisa/optimize/mod_optimize.py usr/lib/python3.15/dist-packages/mmtbx/sisa/optimize/mod_util.py usr/lib/python3.15/dist-packages/mmtbx/solvent/ usr/lib/python3.15/dist-packages/mmtbx/solvent/__init__.py usr/lib/python3.15/dist-packages/mmtbx/solvent/ensemble_ordered_solvent.py usr/lib/python3.15/dist-packages/mmtbx/solvent/map_to_water.py usr/lib/python3.15/dist-packages/mmtbx/solvent/ordered_solvent.py usr/lib/python3.15/dist-packages/mmtbx/suitename/ usr/lib/python3.15/dist-packages/mmtbx/suitename/__init__.py usr/lib/python3.15/dist-packages/mmtbx/suitename/diangle.py usr/lib/python3.15/dist-packages/mmtbx/suitename/dualparse.py usr/lib/python3.15/dist-packages/mmtbx/suitename/mainchain.py usr/lib/python3.15/dist-packages/mmtbx/suitename/suitealyze.py usr/lib/python3.15/dist-packages/mmtbx/suitename/suitename.py usr/lib/python3.15/dist-packages/mmtbx/suitename/suitenamedefs.py usr/lib/python3.15/dist-packages/mmtbx/suitename/suiteninit.py usr/lib/python3.15/dist-packages/mmtbx/suitename/suiteninput.py usr/lib/python3.15/dist-packages/mmtbx/suitename/suitenout.py usr/lib/python3.15/dist-packages/mmtbx/suitename/suites.py usr/lib/python3.15/dist-packages/mmtbx/suitename/transdent.py usr/lib/python3.15/dist-packages/mmtbx/tls/ usr/lib/python3.15/dist-packages/mmtbx/tls/__init__.py usr/lib/python3.15/dist-packages/mmtbx/tls/analysis.py usr/lib/python3.15/dist-packages/mmtbx/tls/command_line.py usr/lib/python3.15/dist-packages/mmtbx/tls/decompose.py usr/lib/python3.15/dist-packages/mmtbx/tls/ladp.py usr/lib/python3.15/dist-packages/mmtbx/tls/optimise_amplitudes.py usr/lib/python3.15/dist-packages/mmtbx/tls/perm10.py usr/lib/python3.15/dist-packages/mmtbx/tls/perm11.py usr/lib/python3.15/dist-packages/mmtbx/tls/perm12.py usr/lib/python3.15/dist-packages/mmtbx/tls/perm13.py usr/lib/python3.15/dist-packages/mmtbx/tls/perm14.py usr/lib/python3.15/dist-packages/mmtbx/tls/perm15.py usr/lib/python3.15/dist-packages/mmtbx/tls/tls_as_xyz.py usr/lib/python3.15/dist-packages/mmtbx/tls/tools.py usr/lib/python3.15/dist-packages/mmtbx/tls/utils.py usr/lib/python3.15/dist-packages/mmtbx/twinning/ usr/lib/python3.15/dist-packages/mmtbx/twinning/__init__.py usr/lib/python3.15/dist-packages/mmtbx/twinning/probabalistic_detwinning.py usr/lib/python3.15/dist-packages/mmtbx/twinning/twin_f_model.py usr/lib/python3.15/dist-packages/mmtbx/utils/ usr/lib/python3.15/dist-packages/mmtbx/utils/__init__.py usr/lib/python3.15/dist-packages/mmtbx/utils/fab_elbow_angle.py usr/lib/python3.15/dist-packages/mmtbx/utils/grid2d.py usr/lib/python3.15/dist-packages/mmtbx/utils/ntc.py usr/lib/python3.15/dist-packages/mmtbx/utils/rotatable_bonds.py usr/lib/python3.15/dist-packages/mmtbx/utils/tst_switch_rotamers.py usr/lib/python3.15/dist-packages/mmtbx/validation/ usr/lib/python3.15/dist-packages/mmtbx/validation/__init__.py usr/lib/python3.15/dist-packages/mmtbx/validation/analyze_peptides.py usr/lib/python3.15/dist-packages/mmtbx/validation/barbed_wire_analysis.py usr/lib/python3.15/dist-packages/mmtbx/validation/cablam.py usr/lib/python3.15/dist-packages/mmtbx/validation/cbd_utils.py usr/lib/python3.15/dist-packages/mmtbx/validation/cbetadev.py usr/lib/python3.15/dist-packages/mmtbx/validation/chain_comparison.py usr/lib/python3.15/dist-packages/mmtbx/validation/clashscore.py usr/lib/python3.15/dist-packages/mmtbx/validation/clashscore2.py usr/lib/python3.15/dist-packages/mmtbx/validation/comparama.py usr/lib/python3.15/dist-packages/mmtbx/validation/comprehensive_residue.py usr/lib/python3.15/dist-packages/mmtbx/validation/convert_lists.py usr/lib/python3.15/dist-packages/mmtbx/validation/datasets.py usr/lib/python3.15/dist-packages/mmtbx/validation/ensembles.py usr/lib/python3.15/dist-packages/mmtbx/validation/experimental.py usr/lib/python3.15/dist-packages/mmtbx/validation/fav_lists.py usr/lib/python3.15/dist-packages/mmtbx/validation/graphics.py usr/lib/python3.15/dist-packages/mmtbx/validation/holton_geometry_validation.py usr/lib/python3.15/dist-packages/mmtbx/validation/ligand_interactions.py usr/lib/python3.15/dist-packages/mmtbx/validation/ligands.py usr/lib/python3.15/dist-packages/mmtbx/validation/mean_devs_PRO_phi_psi.py usr/lib/python3.15/dist-packages/mmtbx/validation/mean_devs_VAL_THR_ILE_phi_psi.py usr/lib/python3.15/dist-packages/mmtbx/validation/mean_devs_others_phi_psi.py usr/lib/python3.15/dist-packages/mmtbx/validation/model_properties.py usr/lib/python3.15/dist-packages/mmtbx/validation/mp_validate_bonds.py usr/lib/python3.15/dist-packages/mmtbx/validation/omegalyze.py usr/lib/python3.15/dist-packages/mmtbx/validation/phi_psi_2_data.py usr/lib/python3.15/dist-packages/mmtbx/validation/rama_z.py usr/lib/python3.15/dist-packages/mmtbx/validation/ramalyze.py usr/lib/python3.15/dist-packages/mmtbx/validation/restraints.py usr/lib/python3.15/dist-packages/mmtbx/validation/rna_validate.py usr/lib/python3.15/dist-packages/mmtbx/validation/rotalyze.py usr/lib/python3.15/dist-packages/mmtbx/validation/sequence.py usr/lib/python3.15/dist-packages/mmtbx/validation/undowser.py usr/lib/python3.15/dist-packages/mmtbx/validation/undowser2.py usr/lib/python3.15/dist-packages/mmtbx/validation/utils.py usr/lib/python3.15/dist-packages/mmtbx/validation/validate_ligands.py usr/lib/python3.15/dist-packages/mmtbx/validation/waters.py usr/lib/python3.15/dist-packages/mmtbx/validation/molprobity/ usr/lib/python3.15/dist-packages/mmtbx/validation/molprobity/__init__.py usr/lib/python3.15/dist-packages/mmtbx/validation/molprobity/kinemage_templates.py usr/lib/python3.15/dist-packages/mmtbx/validation/molprobity/mp_geo.py usr/lib/python3.15/dist-packages/mmtbx/validation/molprobity/percentile_clashscore.py usr/lib/python3.15/dist-packages/mmtbx/validation/molprobity/percentile_mpscore.py usr/lib/python3.15/dist-packages/mmtbx/validation/molprobity/probescore_ligand.py usr/lib/python3.15/dist-packages/mmtbx/validation/molprobity/table_from_json.py usr/lib/python3.15/dist-packages/mmtbx/validation/ramachandran/ usr/lib/python3.15/dist-packages/mmtbx/validation/ramachandran/__init__.py usr/lib/python3.15/dist-packages/mmtbx/validation/ramachandran/convert_from_text.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/ usr/lib/python3.15/dist-packages/mmtbx/validation/regression/__init__.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/run_restraints.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_barbed_wire_analysis.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_cablam.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_cablam_2.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_cbetadev.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_cbetadev_02.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_chiral_validation.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_clashscore.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_clashscore_2.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_do_flips_clashscore.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_experimental.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_find_region_max_value.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_keep_hydrogens.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_model_properties.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_molprobity_1.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_molprobity_2.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_molprobity_3.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_molprobity_4.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_molprobity_5.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_molprobity_arguments.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_mp_geo.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_mp_geo_endtoend.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_mp_validate_bonds.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_omegalyze.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_probe2_asu_bond_proxies.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_rama_z_01.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_rama_z_02.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_ramalyze.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_ramalyze2.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_ramalyze_rare.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_restraints.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_rna_validate.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_rotalyze.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_suitename.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_symmetry_SS.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_undowser.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_undowser2.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_utils.py usr/lib/python3.15/dist-packages/mmtbx/validation/regression/tst_waters.py usr/lib/python3.15/dist-packages/mmtbx/wwpdb/ usr/lib/python3.15/dist-packages/mmtbx/wwpdb/__init__.py usr/lib/python3.15/dist-packages/mmtbx/wwpdb/rcsb_entry_request.py usr/lib/python3.15/dist-packages/mmtbx/wwpdb/rcsb_web_services.py usr/lib/python3.15/dist-packages/mmtbx/wwpdb/tst_rcsb_entry_request.py usr/lib/python3.15/dist-packages/mmtbx/wwpdb/tst_rcsb_web_services.py usr/lib/python3.15/dist-packages/omptbx/ usr/lib/python3.15/dist-packages/omptbx/__init__.py usr/lib/python3.15/dist-packages/omptbx/tst.py usr/lib/python3.15/dist-packages/qttbx/ usr/lib/python3.15/dist-packages/qttbx/__init__.py usr/lib/python3.15/dist-packages/qttbx/phil.py usr/lib/python3.15/dist-packages/qttbx/qt.py usr/lib/python3.15/dist-packages/qttbx/run_tests.py usr/lib/python3.15/dist-packages/qttbx/examples/ usr/lib/python3.15/dist-packages/qttbx/examples/__init__.py usr/lib/python3.15/dist-packages/qttbx/examples/_helpers.py usr/lib/python3.15/dist-packages/qttbx/examples/data_manager_example.py usr/lib/python3.15/dist-packages/qttbx/examples/phil_widgets_example.py usr/lib/python3.15/dist-packages/qttbx/regression/ usr/lib/python3.15/dist-packages/qttbx/regression/__init__.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_agent_core.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_approval_coordinator.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_artifact_panel.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_auto_height.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_conversation_widgets.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_credentials_dialog.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_diagnostics.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_eliding.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_image.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_logging_setup.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_markdown.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_mcp_client.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_message_bubble.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_message_input.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_overlay_anchor.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_profile.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_question_card.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_runner.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_search.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_session.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_skills.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_storage.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_storage_session.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_subagent.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_subagent_view.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_tool_approval.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_tools.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_chat_window_chrome.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_data_manager_widget.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_phil_widgets.py usr/lib/python3.15/dist-packages/qttbx/regression/tst_run_tests_manifest.py usr/lib/python3.15/dist-packages/qttbx/viewers/ usr/lib/python3.15/dist-packages/qttbx/viewers/__init__.py usr/lib/python3.15/dist-packages/qttbx/viewers/chimerax.py usr/lib/python3.15/dist-packages/qttbx/widgets/ usr/lib/python3.15/dist-packages/qttbx/widgets/__init__.py usr/lib/python3.15/dist-packages/qttbx/widgets/font_init.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/ usr/lib/python3.15/dist-packages/qttbx/widgets/chat/__init__.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/artifact.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/artifact_panel.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/auto_height.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/chat_top_bar.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/conversation_list.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/conversation_search.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/conversation_view.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/credentials_dialog.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/diagnostics.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/edge_rail.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/eliding.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/image_cache.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/image_lightbox.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/logging_setup.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/markdown_export.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/markdown_view.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/message_bubble.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/message_input.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/overlay_anchor.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/question_card.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/search_bar.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/tool_approval.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/tool_call_disclosure.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/agent/ usr/lib/python3.15/dist-packages/qttbx/widgets/chat/agent/__init__.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/agent/approval.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/agent/base.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/agent/conversation.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/agent/errors.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/agent/events.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/agent/mcp_client.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/agent/paths.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/agent/profile.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/agent/runner.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/agent/session.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/agent/skills.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/agent/storage.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/agent/subagent.py usr/lib/python3.15/dist-packages/qttbx/widgets/chat/agent/tools.py usr/lib/python3.15/dist-packages/qttbx/widgets/data_manager/ usr/lib/python3.15/dist-packages/qttbx/widgets/data_manager/__init__.py usr/lib/python3.15/dist-packages/qttbx/widgets/data_manager/_binding_popup.py usr/lib/python3.15/dist-packages/qttbx/widgets/data_manager/_delegate.py usr/lib/python3.15/dist-packages/qttbx/widgets/data_manager/_phil_helpers.py usr/lib/python3.15/dist-packages/qttbx/widgets/data_manager/_table_model.py usr/lib/python3.15/dist-packages/qttbx/widgets/data_manager/widget.py usr/lib/python3.15/dist-packages/qttbx/widgets/phil/ usr/lib/python3.15/dist-packages/qttbx/widgets/phil/__init__.py usr/lib/python3.15/dist-packages/qttbx/widgets/phil/_colors.py usr/lib/python3.15/dist-packages/qttbx/widgets/phil/atom_selection.py usr/lib/python3.15/dist-packages/qttbx/widgets/phil/bool_widget.py usr/lib/python3.15/dist-packages/qttbx/widgets/phil/choice_widget.py usr/lib/python3.15/dist-packages/qttbx/widgets/phil/delegate.py usr/lib/python3.15/dist-packages/qttbx/widgets/phil/float_widget.py usr/lib/python3.15/dist-packages/qttbx/widgets/phil/floats_widget.py usr/lib/python3.15/dist-packages/qttbx/widgets/phil/int_widget.py usr/lib/python3.15/dist-packages/qttbx/widgets/phil/ints_widget.py usr/lib/python3.15/dist-packages/qttbx/widgets/phil/key_widget.py usr/lib/python3.15/dist-packages/qttbx/widgets/phil/multiple.py usr/lib/python3.15/dist-packages/qttbx/widgets/phil/path_widget.py usr/lib/python3.15/dist-packages/qttbx/widgets/phil/qstr_widget.py usr/lib/python3.15/dist-packages/qttbx/widgets/phil/space_group.py usr/lib/python3.15/dist-packages/qttbx/widgets/phil/str_widget.py usr/lib/python3.15/dist-packages/qttbx/widgets/phil/strings_widget.py usr/lib/python3.15/dist-packages/qttbx/widgets/phil/text_base.py usr/lib/python3.15/dist-packages/qttbx/widgets/phil/unit_cell.py usr/lib/python3.15/dist-packages/qttbx/widgets/phil/words_widget.py usr/lib/python3.15/dist-packages/rstbx/ usr/lib/python3.15/dist-packages/rstbx/__init__.py usr/lib/python3.15/dist-packages/rstbx/run_tests.py usr/lib/python3.15/dist-packages/rstbx/utils.py usr/lib/python3.15/dist-packages/rstbx/apps/ usr/lib/python3.15/dist-packages/rstbx/apps/__init__.py usr/lib/python3.15/dist-packages/rstbx/apps/dual_resolution_helpers.py usr/lib/python3.15/dist-packages/rstbx/apps/slip_helpers.py usr/lib/python3.15/dist-packages/rstbx/apps/spot_markup.py usr/lib/python3.15/dist-packages/rstbx/apps/stills/ usr/lib/python3.15/dist-packages/rstbx/apps/stills/__init__.py usr/lib/python3.15/dist-packages/rstbx/apps/stills/deltapsi_refinement_preceding_integration.py usr/lib/python3.15/dist-packages/rstbx/apps/stills/dials_refinement_preceding_integration.py usr/lib/python3.15/dist-packages/rstbx/apps/stills/simple_integration.py usr/lib/python3.15/dist-packages/rstbx/apps/stills/stills_integration.py usr/lib/python3.15/dist-packages/rstbx/apps/stills/util.py usr/lib/python3.15/dist-packages/rstbx/array_family/ usr/lib/python3.15/dist-packages/rstbx/array_family/__init__.py usr/lib/python3.15/dist-packages/rstbx/array_family/flex.py usr/lib/python3.15/dist-packages/rstbx/bandpass/ usr/lib/python3.15/dist-packages/rstbx/bandpass/__init__.py usr/lib/python3.15/dist-packages/rstbx/bandpass/simulated_annealing.py usr/lib/python3.15/dist-packages/rstbx/bpcx/ usr/lib/python3.15/dist-packages/rstbx/bpcx/__init__.py usr/lib/python3.15/dist-packages/rstbx/bpcx/compare_mosflm_xds.py usr/lib/python3.15/dist-packages/rstbx/bpcx/ersatz_misset.py usr/lib/python3.15/dist-packages/rstbx/bpcx/uc1_2.py usr/lib/python3.15/dist-packages/rstbx/bpcx/uc1_2_positions.py usr/lib/python3.15/dist-packages/rstbx/bpcx/uc1_2_positions_idx.py usr/lib/python3.15/dist-packages/rstbx/bpcx/uc1_2_validate.py usr/lib/python3.15/dist-packages/rstbx/bpcx/uc1_2a.py usr/lib/python3.15/dist-packages/rstbx/bpcx/detector_model/ usr/lib/python3.15/dist-packages/rstbx/bpcx/detector_model/__init__.py usr/lib/python3.15/dist-packages/rstbx/bpcx/detector_model/detector.py usr/lib/python3.15/dist-packages/rstbx/bpcx/detector_model/instrument_specifics.py usr/lib/python3.15/dist-packages/rstbx/bpcx/detector_model/tst_detector_model.py usr/lib/python3.15/dist-packages/rstbx/cftbx/ usr/lib/python3.15/dist-packages/rstbx/cftbx/__init__.py usr/lib/python3.15/dist-packages/rstbx/cftbx/coordinate_frame_converter.py usr/lib/python3.15/dist-packages/rstbx/cftbx/coordinate_frame_helpers.py usr/lib/python3.15/dist-packages/rstbx/cftbx/tst_coordinate_frame_converter.py usr/lib/python3.15/dist-packages/rstbx/command_line/ usr/lib/python3.15/dist-packages/rstbx/command_line/__init__.py usr/lib/python3.15/dist-packages/rstbx/command_line/example_viewer.py usr/lib/python3.15/dist-packages/rstbx/command_line/index.py usr/lib/python3.15/dist-packages/rstbx/command_line/simage.create.py usr/lib/python3.15/dist-packages/rstbx/command_line/simage.explore_completeness.py usr/lib/python3.15/dist-packages/rstbx/command_line/simage.solver.py usr/lib/python3.15/dist-packages/rstbx/command_line/simage.wx_display.py usr/lib/python3.15/dist-packages/rstbx/command_line/slip_viewer.py usr/lib/python3.15/dist-packages/rstbx/command_line/viewer.py usr/lib/python3.15/dist-packages/rstbx/detectors/ usr/lib/python3.15/dist-packages/rstbx/detectors/__init__.py usr/lib/python3.15/dist-packages/rstbx/detectors/silicon.py usr/lib/python3.15/dist-packages/rstbx/dials_core/ usr/lib/python3.15/dist-packages/rstbx/dials_core/__init__.py usr/lib/python3.15/dist-packages/rstbx/dials_core/integration_core.py usr/lib/python3.15/dist-packages/rstbx/diffraction/ usr/lib/python3.15/dist-packages/rstbx/diffraction/__init__.py usr/lib/python3.15/dist-packages/rstbx/diffraction/tst_ewald_sphere.py usr/lib/python3.15/dist-packages/rstbx/diffraction/tst_partial_derivatives.py usr/lib/python3.15/dist-packages/rstbx/diffraction/tst_predict.py usr/lib/python3.15/dist-packages/rstbx/diffraction/fastbragg/ usr/lib/python3.15/dist-packages/rstbx/diffraction/fastbragg/__init__.py usr/lib/python3.15/dist-packages/rstbx/diffraction/fastbragg/tst_bragg_minimal.py usr/lib/python3.15/dist-packages/rstbx/diffraction/fastbragg/tst_utils_clustering.py usr/lib/python3.15/dist-packages/rstbx/dps_core/ usr/lib/python3.15/dist-packages/rstbx/dps_core/__init__.py usr/lib/python3.15/dist-packages/rstbx/dps_core/basis_choice.py usr/lib/python3.15/dist-packages/rstbx/dps_core/cell_assessment.py usr/lib/python3.15/dist-packages/rstbx/dps_core/constrainment.py usr/lib/python3.15/dist-packages/rstbx/dps_core/lepage.py usr/lib/python3.15/dist-packages/rstbx/dps_core/sampling.py usr/lib/python3.15/dist-packages/rstbx/dps_core/tst_iotbx_converter.py usr/lib/python3.15/dist-packages/rstbx/dps_core/zuoreduction.py usr/lib/python3.15/dist-packages/rstbx/indexing/ usr/lib/python3.15/dist-packages/rstbx/indexing/__init__.py usr/lib/python3.15/dist-packages/rstbx/indexing/do_index.py usr/lib/python3.15/dist-packages/rstbx/indexing/tst_auto_monoscan.py usr/lib/python3.15/dist-packages/rstbx/indexing/tst_dataset1.py usr/lib/python3.15/dist-packages/rstbx/indexing_api/ usr/lib/python3.15/dist-packages/rstbx/indexing_api/__init__.py usr/lib/python3.15/dist-packages/rstbx/indexing_api/basis_choice.py usr/lib/python3.15/dist-packages/rstbx/indexing_api/force_cell.py usr/lib/python3.15/dist-packages/rstbx/indexing_api/lattice.py usr/lib/python3.15/dist-packages/rstbx/indexing_api/nearest_neighbor.py usr/lib/python3.15/dist-packages/rstbx/indexing_api/outlier_detection.py usr/lib/python3.15/dist-packages/rstbx/indexing_api/outlier_procedure.py usr/lib/python3.15/dist-packages/rstbx/indexing_api/sampling.py usr/lib/python3.15/dist-packages/rstbx/indexing_api/test_dps.py usr/lib/python3.15/dist-packages/rstbx/indexing_api/tools.py usr/lib/python3.15/dist-packages/rstbx/new_horizons/ usr/lib/python3.15/dist-packages/rstbx/new_horizons/__init__.py usr/lib/python3.15/dist-packages/rstbx/new_horizons/index.py usr/lib/python3.15/dist-packages/rstbx/new_horizons/oscillation_shots.py usr/lib/python3.15/dist-packages/rstbx/new_horizons/pixel_spread.py usr/lib/python3.15/dist-packages/rstbx/new_horizons/speckfinder.py usr/lib/python3.15/dist-packages/rstbx/new_horizons/spot_shape.py usr/lib/python3.15/dist-packages/rstbx/new_horizons/stats_index.py usr/lib/python3.15/dist-packages/rstbx/outlier_spots/ usr/lib/python3.15/dist-packages/rstbx/outlier_spots/__init__.py usr/lib/python3.15/dist-packages/rstbx/outlier_spots/fit_distribution.py usr/lib/python3.15/dist-packages/rstbx/phil/ usr/lib/python3.15/dist-packages/rstbx/phil/__init__.py usr/lib/python3.15/dist-packages/rstbx/phil/phil_preferences.py usr/lib/python3.15/dist-packages/rstbx/phil/preferences.py usr/lib/python3.15/dist-packages/rstbx/phil/scope.py usr/lib/python3.15/dist-packages/rstbx/simage/ usr/lib/python3.15/dist-packages/rstbx/simage/__init__.py usr/lib/python3.15/dist-packages/rstbx/simage/create.py usr/lib/python3.15/dist-packages/rstbx/simage/explore_completeness.py usr/lib/python3.15/dist-packages/rstbx/simage/integrate_crude.py usr/lib/python3.15/dist-packages/rstbx/simage/refine_uc_cr.py usr/lib/python3.15/dist-packages/rstbx/simage/run_labelit_index.py usr/lib/python3.15/dist-packages/rstbx/simage/run_spotfinder.py usr/lib/python3.15/dist-packages/rstbx/simage/solver.py usr/lib/python3.15/dist-packages/rstbx/simage/tst.py usr/lib/python3.15/dist-packages/rstbx/simage/wx_display.py usr/lib/python3.15/dist-packages/rstbx/simulation/ usr/lib/python3.15/dist-packages/rstbx/simulation/__init__.py usr/lib/python3.15/dist-packages/rstbx/simulation/constants.py usr/lib/python3.15/dist-packages/rstbx/simulation/sim_pdf.py usr/lib/python3.15/dist-packages/rstbx/simulation/sim_utils.py usr/lib/python3.15/dist-packages/rstbx/simulation/tst_xfel1_simple.py usr/lib/python3.15/dist-packages/rstbx/slip_viewer/ usr/lib/python3.15/dist-packages/rstbx/slip_viewer/__init__.py usr/lib/python3.15/dist-packages/rstbx/slip_viewer/calibration_frame.py usr/lib/python3.15/dist-packages/rstbx/slip_viewer/example_frame_plugin_hidden.py usr/lib/python3.15/dist-packages/rstbx/slip_viewer/frame.py usr/lib/python3.15/dist-packages/rstbx/slip_viewer/pyslip.py usr/lib/python3.15/dist-packages/rstbx/slip_viewer/ring_frame.py usr/lib/python3.15/dist-packages/rstbx/slip_viewer/score_frame.py usr/lib/python3.15/dist-packages/rstbx/slip_viewer/slip_display.py usr/lib/python3.15/dist-packages/rstbx/slip_viewer/slip_viewer_image_factory.py usr/lib/python3.15/dist-packages/rstbx/slip_viewer/tile_generation.py usr/lib/python3.15/dist-packages/rstbx/slip_viewer/uc_frame.py usr/lib/python3.15/dist-packages/rstbx/sublattice_support/ usr/lib/python3.15/dist-packages/rstbx/sublattice_support/__init__.py usr/lib/python3.15/dist-packages/rstbx/sublattice_support/change_basis.py usr/lib/python3.15/dist-packages/rstbx/sublattice_support/tst_sublattice.py usr/lib/python3.15/dist-packages/rstbx/symmetry/ usr/lib/python3.15/dist-packages/rstbx/symmetry/__init__.py usr/lib/python3.15/dist-packages/rstbx/symmetry/sgtbx_adaptor.py usr/lib/python3.15/dist-packages/rstbx/symmetry/subgroup.py usr/lib/python3.15/dist-packages/rstbx/symmetry/constraints/ usr/lib/python3.15/dist-packages/rstbx/symmetry/constraints/__init__.py usr/lib/python3.15/dist-packages/rstbx/symmetry/constraints/g_gradients.py usr/lib/python3.15/dist-packages/rstbx/symmetry/constraints/parameter_reduction.py usr/lib/python3.15/dist-packages/rstbx/viewer/ usr/lib/python3.15/dist-packages/rstbx/viewer/__init__.py usr/lib/python3.15/dist-packages/rstbx/viewer/calibration.py usr/lib/python3.15/dist-packages/rstbx/viewer/calibration_frame.py usr/lib/python3.15/dist-packages/rstbx/viewer/controls.py usr/lib/python3.15/dist-packages/rstbx/viewer/dataset.py usr/lib/python3.15/dist-packages/rstbx/viewer/display.py usr/lib/python3.15/dist-packages/rstbx/viewer/drivers.py usr/lib/python3.15/dist-packages/rstbx/viewer/frame.py usr/lib/python3.15/dist-packages/rstbx/viewer/indexing.py usr/lib/python3.15/dist-packages/rstbx/viewer/integration.py usr/lib/python3.15/dist-packages/rstbx/viewer/pixels3d.py usr/lib/python3.15/dist-packages/rstbx/viewer/processing.py usr/lib/python3.15/dist-packages/rstbx/viewer/results_base.py usr/lib/python3.15/dist-packages/rstbx/viewer/spotfinder_frame.py usr/lib/python3.15/dist-packages/rstbx/viewer/spotfinder_wrap.py usr/lib/python3.15/dist-packages/rstbx/viewer/tst.py usr/lib/python3.15/dist-packages/scitbx/ usr/lib/python3.15/dist-packages/scitbx/__init__.py usr/lib/python3.15/dist-packages/scitbx/cross_entropy.py usr/lib/python3.15/dist-packages/scitbx/cubicle_neighbors.py usr/lib/python3.15/dist-packages/scitbx/differential_evolution.py usr/lib/python3.15/dist-packages/scitbx/direct_search_simulated_annealing.py usr/lib/python3.15/dist-packages/scitbx/fftpack.py usr/lib/python3.15/dist-packages/scitbx/genetic_algorithm_with_mp.py usr/lib/python3.15/dist-packages/scitbx/golden_section_search.py usr/lib/python3.15/dist-packages/scitbx/lbfgsb.py usr/lib/python3.15/dist-packages/scitbx/libtbx_refresh.py usr/lib/python3.15/dist-packages/scitbx/minimizers.py usr/lib/python3.15/dist-packages/scitbx/minpack.py usr/lib/python3.15/dist-packages/scitbx/r3_utils.py usr/lib/python3.15/dist-packages/scitbx/regular_grid_on_unit_sphere.py usr/lib/python3.15/dist-packages/scitbx/restraints.py usr/lib/python3.15/dist-packages/scitbx/run_tests.py usr/lib/python3.15/dist-packages/scitbx/simplex.py usr/lib/python3.15/dist-packages/scitbx/smoothing.py usr/lib/python3.15/dist-packages/scitbx/array_family/ usr/lib/python3.15/dist-packages/scitbx/array_family/__init__.py usr/lib/python3.15/dist-packages/scitbx/array_family/flex.py usr/lib/python3.15/dist-packages/scitbx/array_family/shared.py usr/lib/python3.15/dist-packages/scitbx/array_family/accessors/ usr/lib/python3.15/dist-packages/scitbx/array_family/accessors/__init__.py usr/lib/python3.15/dist-packages/scitbx/array_family/boost_python/ usr/lib/python3.15/dist-packages/scitbx/array_family/boost_python/__init__.py usr/lib/python3.15/dist-packages/scitbx/array_family/boost_python/regression_test.py usr/lib/python3.15/dist-packages/scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py usr/lib/python3.15/dist-packages/scitbx/array_family/boost_python/tst_flex.py usr/lib/python3.15/dist-packages/scitbx/array_family/boost_python/tst_flex_argument_passing.py usr/lib/python3.15/dist-packages/scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py usr/lib/python3.15/dist-packages/scitbx/array_family/boost_python/tst_numpy_bridge.py usr/lib/python3.15/dist-packages/scitbx/array_family/boost_python/tst_numpy_scalar_conversions.py usr/lib/python3.15/dist-packages/scitbx/array_family/boost_python/tst_shared.py usr/lib/python3.15/dist-packages/scitbx/array_family/boost_python/tst_smart_selection.py usr/lib/python3.15/dist-packages/scitbx/array_family/detail/ usr/lib/python3.15/dist-packages/scitbx/array_family/detail/__init__.py usr/lib/python3.15/dist-packages/scitbx/boost_python/ usr/lib/python3.15/dist-packages/scitbx/boost_python/__init__.py usr/lib/python3.15/dist-packages/scitbx/command_line/ usr/lib/python3.15/dist-packages/scitbx/command_line/__init__.py usr/lib/python3.15/dist-packages/scitbx/command_line/apply_tapenade_hints.py usr/lib/python3.15/dist-packages/scitbx/command_line/generate_error_h.py usr/lib/python3.15/dist-packages/scitbx/command_line/histogram.py usr/lib/python3.15/dist-packages/scitbx/command_line/show_exp_times.py usr/lib/python3.15/dist-packages/scitbx/command_line/show_sizes.py usr/lib/python3.15/dist-packages/scitbx/command_line/unicode_examples.py usr/lib/python3.15/dist-packages/scitbx/dtmin/ usr/lib/python3.15/dist-packages/scitbx/dtmin/__init__.py usr/lib/python3.15/dist-packages/scitbx/dtmin/auxiliary.py usr/lib/python3.15/dist-packages/scitbx/dtmin/bounds.py usr/lib/python3.15/dist-packages/scitbx/dtmin/compulsory.py usr/lib/python3.15/dist-packages/scitbx/dtmin/min_logging.py usr/lib/python3.15/dist-packages/scitbx/dtmin/minimizer.py usr/lib/python3.15/dist-packages/scitbx/dtmin/optional.py usr/lib/python3.15/dist-packages/scitbx/dtmin/realsymmetricpseudoinverse.py usr/lib/python3.15/dist-packages/scitbx/dtmin/refinebase.py usr/lib/python3.15/dist-packages/scitbx/dtmin/reparams.py usr/lib/python3.15/dist-packages/scitbx/dtmin/twisted_gaussian.py usr/lib/python3.15/dist-packages/scitbx/dtmin/regression/ usr/lib/python3.15/dist-packages/scitbx/dtmin/regression/__init__.py usr/lib/python3.15/dist-packages/scitbx/dtmin/regression/tst_dtmin_basic.py usr/lib/python3.15/dist-packages/scitbx/dtmin/regression/tst_dtmin_booth.py usr/lib/python3.15/dist-packages/scitbx/dtmin/regression/tst_dtmin_twisted.py usr/lib/python3.15/dist-packages/scitbx/error/ usr/lib/python3.15/dist-packages/scitbx/error/__init__.py usr/lib/python3.15/dist-packages/scitbx/error/tst_error.py usr/lib/python3.15/dist-packages/scitbx/examples/ usr/lib/python3.15/dist-packages/scitbx/examples/__init__.py usr/lib/python3.15/dist-packages/scitbx/examples/bootstrap.py usr/lib/python3.15/dist-packages/scitbx/examples/chebyshev_lsq_example.py usr/lib/python3.15/dist-packages/scitbx/examples/flex_array_loops.py usr/lib/python3.15/dist-packages/scitbx/examples/flex_grid.py usr/lib/python3.15/dist-packages/scitbx/examples/functions.py usr/lib/python3.15/dist-packages/scitbx/examples/immoptibox_ports.py usr/lib/python3.15/dist-packages/scitbx/examples/integrating_a_weighted_sinc_function.py usr/lib/python3.15/dist-packages/scitbx/examples/lbfgs_linear_least_squares_fit.py usr/lib/python3.15/dist-packages/scitbx/examples/lbfgs_recipe.py usr/lib/python3.15/dist-packages/scitbx/examples/minimizer_comparisons.py usr/lib/python3.15/dist-packages/scitbx/examples/principal_axes_of_inertia.py usr/lib/python3.15/dist-packages/scitbx/examples/rigid_body_refinement_core.py usr/lib/python3.15/dist-packages/scitbx/examples/bevington/ usr/lib/python3.15/dist-packages/scitbx/examples/bevington/__init__.py usr/lib/python3.15/dist-packages/scitbx/examples/bevington/silver.py usr/lib/python3.15/dist-packages/scitbx/glmtbx/ usr/lib/python3.15/dist-packages/scitbx/glmtbx/__init__.py usr/lib/python3.15/dist-packages/scitbx/glmtbx/boost_python/ usr/lib/python3.15/dist-packages/scitbx/glmtbx/boost_python/__init__.py usr/lib/python3.15/dist-packages/scitbx/glmtbx/tests/ usr/lib/python3.15/dist-packages/scitbx/glmtbx/tests/__init__.py usr/lib/python3.15/dist-packages/scitbx/glmtbx/tests/tst.py usr/lib/python3.15/dist-packages/scitbx/graph/ usr/lib/python3.15/dist-packages/scitbx/graph/__init__.py usr/lib/python3.15/dist-packages/scitbx/graph/rigidity.py usr/lib/python3.15/dist-packages/scitbx/graph/rigidity_matrix_symbolic.py usr/lib/python3.15/dist-packages/scitbx/graph/tardy_tree.py usr/lib/python3.15/dist-packages/scitbx/graph/test_cases_tardy_pdb.py usr/lib/python3.15/dist-packages/scitbx/graph/tst_rigidity.py usr/lib/python3.15/dist-packages/scitbx/graph/tst_tardy_tree.py usr/lib/python3.15/dist-packages/scitbx/graph/tst_tardy_tree_find_paths.py usr/lib/python3.15/dist-packages/scitbx/graph/tst_utils.py usr/lib/python3.15/dist-packages/scitbx/graph/utils.py usr/lib/python3.15/dist-packages/scitbx/graphics_utils/ usr/lib/python3.15/dist-packages/scitbx/graphics_utils/__init__.py usr/lib/python3.15/dist-packages/scitbx/graphics_utils/tst.py usr/lib/python3.15/dist-packages/scitbx/iso_surface/ usr/lib/python3.15/dist-packages/scitbx/iso_surface/__init__.py usr/lib/python3.15/dist-packages/scitbx/iso_surface/tst_iso_surface.py usr/lib/python3.15/dist-packages/scitbx/lbfgs/ usr/lib/python3.15/dist-packages/scitbx/lbfgs/__init__.py usr/lib/python3.15/dist-packages/scitbx/lbfgs/tst_curvatures.py usr/lib/python3.15/dist-packages/scitbx/lbfgs/tst_ext.py usr/lib/python3.15/dist-packages/scitbx/lbfgs/tst_func_free_line_search.py usr/lib/python3.15/dist-packages/scitbx/lbfgs/tst_lbfgs_fem.py usr/lib/python3.15/dist-packages/scitbx/lbfgs/tst_mpi_split_evaluator.py usr/lib/python3.15/dist-packages/scitbx/lbfgs/dev/ usr/lib/python3.15/dist-packages/scitbx/lbfgs/dev/__init__.py usr/lib/python3.15/dist-packages/scitbx/lbfgs/dev/run.py usr/lib/python3.15/dist-packages/scitbx/lbfgs/dev/twisted_gaussian.py usr/lib/python3.15/dist-packages/scitbx/linalg/ usr/lib/python3.15/dist-packages/scitbx/linalg/__init__.py usr/lib/python3.15/dist-packages/scitbx/linalg/eigensystem.py usr/lib/python3.15/dist-packages/scitbx/linalg/ext.py usr/lib/python3.15/dist-packages/scitbx/linalg/householder.py usr/lib/python3.15/dist-packages/scitbx/linalg/svd.py usr/lib/python3.15/dist-packages/scitbx/linalg/boost_python/ usr/lib/python3.15/dist-packages/scitbx/linalg/boost_python/__init__.py usr/lib/python3.15/dist-packages/scitbx/linalg/tests/ usr/lib/python3.15/dist-packages/scitbx/linalg/tests/__init__.py usr/lib/python3.15/dist-packages/scitbx/linalg/tests/tst_cholesky.py usr/lib/python3.15/dist-packages/scitbx/linalg/tests/tst_eigensystem.py usr/lib/python3.15/dist-packages/scitbx/linalg/tests/tst_lapack_dsyev.py usr/lib/python3.15/dist-packages/scitbx/linalg/tests/tst_lapack_svd.py usr/lib/python3.15/dist-packages/scitbx/linalg/tests/tst_matrix.py usr/lib/python3.15/dist-packages/scitbx/linalg/tests/tst_svd.py usr/lib/python3.15/dist-packages/scitbx/line_search/ usr/lib/python3.15/dist-packages/scitbx/line_search/__init__.py usr/lib/python3.15/dist-packages/scitbx/lstbx/ usr/lib/python3.15/dist-packages/scitbx/lstbx/__init__.py usr/lib/python3.15/dist-packages/scitbx/lstbx/normal_eqns.py usr/lib/python3.15/dist-packages/scitbx/lstbx/normal_eqns_solving.py usr/lib/python3.15/dist-packages/scitbx/lstbx/benchmarks/ usr/lib/python3.15/dist-packages/scitbx/lstbx/benchmarks/__init__.py usr/lib/python3.15/dist-packages/scitbx/lstbx/boost_python/ usr/lib/python3.15/dist-packages/scitbx/lstbx/boost_python/__init__.py usr/lib/python3.15/dist-packages/scitbx/lstbx/tests/ usr/lib/python3.15/dist-packages/scitbx/lstbx/tests/__init__.py usr/lib/python3.15/dist-packages/scitbx/lstbx/tests/test_problems.py usr/lib/python3.15/dist-packages/scitbx/lstbx/tests/tst_normal_equations.py usr/lib/python3.15/dist-packages/scitbx/math/ usr/lib/python3.15/dist-packages/scitbx/math/__init__.py usr/lib/python3.15/dist-packages/scitbx/math/besselk.py usr/lib/python3.15/dist-packages/scitbx/math/breakpoint.py usr/lib/python3.15/dist-packages/scitbx/math/chebyshev_lsq_fit.py usr/lib/python3.15/dist-packages/scitbx/math/clustering.py usr/lib/python3.15/dist-packages/scitbx/math/cubic_spline.py usr/lib/python3.15/dist-packages/scitbx/math/curve_fitting.py usr/lib/python3.15/dist-packages/scitbx/math/des_3_100_13.py usr/lib/python3.15/dist-packages/scitbx/math/des_3_240_21.py usr/lib/python3.15/dist-packages/scitbx/math/distributions.py usr/lib/python3.15/dist-packages/scitbx/math/euler_angles.py usr/lib/python3.15/dist-packages/scitbx/math/ext.py usr/lib/python3.15/dist-packages/scitbx/math/farey.py usr/lib/python3.15/dist-packages/scitbx/math/fit_peak.py usr/lib/python3.15/dist-packages/scitbx/math/fit_quadratic_function.py usr/lib/python3.15/dist-packages/scitbx/math/fliege_mayer_400.py usr/lib/python3.15/dist-packages/scitbx/math/fliege_mayer_900.py usr/lib/python3.15/dist-packages/scitbx/math/fliege_mayer_900_ylm.py usr/lib/python3.15/dist-packages/scitbx/math/gaussian.py usr/lib/python3.15/dist-packages/scitbx/math/gaussian_fit.py usr/lib/python3.15/dist-packages/scitbx/math/gumbel.py usr/lib/python3.15/dist-packages/scitbx/math/incremental_SO3_sampling.py usr/lib/python3.15/dist-packages/scitbx/math/lefebvre.py usr/lib/python3.15/dist-packages/scitbx/math/minimum_covering_ellipsoid.py usr/lib/python3.15/dist-packages/scitbx/math/multiple_superposition.py usr/lib/python3.15/dist-packages/scitbx/math/periodogram.py usr/lib/python3.15/dist-packages/scitbx/math/scale_curves.py usr/lib/python3.15/dist-packages/scitbx/math/sieve_of_eratosthenes.py usr/lib/python3.15/dist-packages/scitbx/math/so3_lie_algebra.py usr/lib/python3.15/dist-packages/scitbx/math/spe.py usr/lib/python3.15/dist-packages/scitbx/math/sphere_sphere_intersection.py usr/lib/python3.15/dist-packages/scitbx/math/superpose.py usr/lib/python3.15/dist-packages/scitbx/math/tst_2d_zernike.py usr/lib/python3.15/dist-packages/scitbx/math/tst_bessel_zeros.py usr/lib/python3.15/dist-packages/scitbx/math/tst_multivariate_moments.py usr/lib/python3.15/dist-packages/scitbx/math/tst_so3_lie_algebra.py usr/lib/python3.15/dist-packages/scitbx/math/tst_undirected_graph.py usr/lib/python3.15/dist-packages/scitbx/math/tst_zernike.py usr/lib/python3.15/dist-packages/scitbx/math/tst_zernike_mom.py usr/lib/python3.15/dist-packages/scitbx/math/undirected_graph.py usr/lib/python3.15/dist-packages/scitbx/math/zernike_align_fft.py usr/lib/python3.15/dist-packages/scitbx/math/boost_python/ usr/lib/python3.15/dist-packages/scitbx/math/boost_python/__init__.py usr/lib/python3.15/dist-packages/scitbx/math/dev/ usr/lib/python3.15/dist-packages/scitbx/math/dev/__init__.py usr/lib/python3.15/dist-packages/scitbx/math/erf/ usr/lib/python3.15/dist-packages/scitbx/math/erf/__init__.py usr/lib/python3.15/dist-packages/scitbx/math/tests/ usr/lib/python3.15/dist-packages/scitbx/math/tests/__init__.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_angle_derivative.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_bessel.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_clustering.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_cubic_equation.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_curve_fitting.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_dmatrix.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_error_propagation_matrix_inverse.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_euler_angles.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_exp_functions.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_fit_peak.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_fit_quadratic_function.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_g_function.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_gaussian.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_gaussian_fit_1d_analytical.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_gcd.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_halton.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_line_search.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_math.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_minimum_covering_ellipsoid.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_orthonormal_basis.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_periodogram.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_quadrature.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_r3_rotation.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_resample.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_similarity_indices.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_superpose.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_tetrahedron.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_uniform_rotation_matrix.py usr/lib/python3.15/dist-packages/scitbx/math/tests/tst_weighted_correlation.py usr/lib/python3.15/dist-packages/scitbx/matrix/ usr/lib/python3.15/dist-packages/scitbx/matrix/__init__.py usr/lib/python3.15/dist-packages/scitbx/matrix/row_echelon.py usr/lib/python3.15/dist-packages/scitbx/matrix/tests/ usr/lib/python3.15/dist-packages/scitbx/matrix/tests/__init__.py usr/lib/python3.15/dist-packages/scitbx/matrix/tests/tst_householder.py usr/lib/python3.15/dist-packages/scitbx/matrix/tests/tst_row_echelon.py usr/lib/python3.15/dist-packages/scitbx/misc/ usr/lib/python3.15/dist-packages/scitbx/misc/__init__.py usr/lib/python3.15/dist-packages/scitbx/python_utils/ usr/lib/python3.15/dist-packages/scitbx/python_utils/__init__.py usr/lib/python3.15/dist-packages/scitbx/python_utils/command_line.py usr/lib/python3.15/dist-packages/scitbx/python_utils/dicts.py usr/lib/python3.15/dist-packages/scitbx/python_utils/graph_tools.py usr/lib/python3.15/dist-packages/scitbx/python_utils/misc.py usr/lib/python3.15/dist-packages/scitbx/python_utils/random_transform.py usr/lib/python3.15/dist-packages/scitbx/python_utils/robust_statistics.py usr/lib/python3.15/dist-packages/scitbx/python_utils/signal_utils.py usr/lib/python3.15/dist-packages/scitbx/python_utils/tst_graph.py usr/lib/python3.15/dist-packages/scitbx/python_utils/tst_random_transform.py usr/lib/python3.15/dist-packages/scitbx/python_utils/tst_robust.py usr/lib/python3.15/dist-packages/scitbx/random/ usr/lib/python3.15/dist-packages/scitbx/random/__init__.py usr/lib/python3.15/dist-packages/scitbx/random/boost_python/ usr/lib/python3.15/dist-packages/scitbx/random/boost_python/__init__.py usr/lib/python3.15/dist-packages/scitbx/random/tests/ usr/lib/python3.15/dist-packages/scitbx/random/tests/__init__.py usr/lib/python3.15/dist-packages/scitbx/random/tests/tst_random.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/ usr/lib/python3.15/dist-packages/scitbx/rigid_body/__init__.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/tst.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/essence/ usr/lib/python3.15/dist-packages/scitbx/rigid_body/essence/__init__.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/essence/body_lib.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/essence/featherstone.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/essence/joint_lib.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/essence/make_bundles.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/essence/spatial_lib.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/essence/tardy.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/essence/tst_basic.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/essence/tst_energy_plots.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/essence/tst_tardy.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/essence/wx_tardy.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/proto/ usr/lib/python3.15/dist-packages/scitbx/rigid_body/proto/__init__.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/proto/featherstone.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/proto/free_motion_reference_impl.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/proto/joint_lib.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/proto/test_simulation.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/proto/test_utils.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/proto/tst_featherstone.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/proto/tst_free_motion.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/proto/tst_free_motion_hard.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/proto/tst_joint_lib.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/proto/tst_molecules.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/proto/tst_singular.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/proto/tst_spherical_refinement.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/proto/utils.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/proto/wx_free_motion.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/proto/wx_joint_lib.py usr/lib/python3.15/dist-packages/scitbx/rigid_body/proto/wx_molecules.py usr/lib/python3.15/dist-packages/scitbx/serialization/ usr/lib/python3.15/dist-packages/scitbx/serialization/__init__.py usr/lib/python3.15/dist-packages/scitbx/slatec/ usr/lib/python3.15/dist-packages/scitbx/slatec/__init__.py usr/lib/python3.15/dist-packages/scitbx/source_generators/ usr/lib/python3.15/dist-packages/scitbx/source_generators/__init__.py usr/lib/python3.15/dist-packages/scitbx/source_generators/flex_fwd_h.py usr/lib/python3.15/dist-packages/scitbx/source_generators/lbfgs_fem.py usr/lib/python3.15/dist-packages/scitbx/source_generators/utils.py usr/lib/python3.15/dist-packages/scitbx/source_generators/array_family/ usr/lib/python3.15/dist-packages/scitbx/source_generators/array_family/__init__.py usr/lib/python3.15/dist-packages/scitbx/source_generators/array_family/generate_algebras.py usr/lib/python3.15/dist-packages/scitbx/source_generators/array_family/generate_all.py usr/lib/python3.15/dist-packages/scitbx/source_generators/array_family/generate_apply.py usr/lib/python3.15/dist-packages/scitbx/source_generators/array_family/generate_operator_functors.py usr/lib/python3.15/dist-packages/scitbx/source_generators/array_family/generate_operator_traits_builtin.py usr/lib/python3.15/dist-packages/scitbx/source_generators/array_family/generate_reductions.py usr/lib/python3.15/dist-packages/scitbx/source_generators/array_family/generate_std_imports.py usr/lib/python3.15/dist-packages/scitbx/source_generators/array_family/operator_functor_info.py usr/lib/python3.15/dist-packages/scitbx/sparse/ usr/lib/python3.15/dist-packages/scitbx/sparse/__init__.py usr/lib/python3.15/dist-packages/scitbx/sparse/boost_python/ usr/lib/python3.15/dist-packages/scitbx/sparse/boost_python/__init__.py usr/lib/python3.15/dist-packages/scitbx/sparse/tests/ usr/lib/python3.15/dist-packages/scitbx/sparse/tests/__init__.py usr/lib/python3.15/dist-packages/scitbx/sparse/tests/tst_lu_factorization.py usr/lib/python3.15/dist-packages/scitbx/sparse/tests/tst_sparse.py usr/lib/python3.15/dist-packages/scitbx/stdlib/ usr/lib/python3.15/dist-packages/scitbx/stdlib/__init__.py usr/lib/python3.15/dist-packages/scitbx/stl/ usr/lib/python3.15/dist-packages/scitbx/stl/__init__.py usr/lib/python3.15/dist-packages/scitbx/stl/map.py usr/lib/python3.15/dist-packages/scitbx/stl/set.py usr/lib/python3.15/dist-packages/scitbx/stl/tst_map.py usr/lib/python3.15/dist-packages/scitbx/stl/tst_set.py usr/lib/python3.15/dist-packages/scitbx/stl/tst_vector.py usr/lib/python3.15/dist-packages/scitbx/stl/vector.py usr/lib/python3.15/dist-packages/scitbx/suffixtree/ usr/lib/python3.15/dist-packages/scitbx/suffixtree/__init__.py usr/lib/python3.15/dist-packages/scitbx/suffixtree/single.py usr/lib/python3.15/dist-packages/scitbx/suffixtree/boost_python/ usr/lib/python3.15/dist-packages/scitbx/suffixtree/boost_python/__init__.py usr/lib/python3.15/dist-packages/scitbx/suffixtree/test/ usr/lib/python3.15/dist-packages/scitbx/suffixtree/test/__init__.py usr/lib/python3.15/dist-packages/scitbx/suffixtree/test/tst_single.py usr/lib/python3.15/dist-packages/scitbx/tests/ usr/lib/python3.15/dist-packages/scitbx/tests/__init__.py usr/lib/python3.15/dist-packages/scitbx/tests/differential_evolution.py usr/lib/python3.15/dist-packages/scitbx/tests/direct_search_simulated_annealing.py usr/lib/python3.15/dist-packages/scitbx/tests/golden_section_search.py usr/lib/python3.15/dist-packages/scitbx/tests/simplex.py usr/lib/python3.15/dist-packages/scitbx/tests/tst_basic.py usr/lib/python3.15/dist-packages/scitbx/tests/tst_cubicle_neighbors.py usr/lib/python3.15/dist-packages/scitbx/tests/tst_genetic_algorithm_with_mp.py usr/lib/python3.15/dist-packages/scitbx/tests/tst_minimizer_lbfgs_general.py usr/lib/python3.15/dist-packages/scitbx/tests/tst_r3_utils.py usr/lib/python3.15/dist-packages/scitbx/tests/tst_regular_grid_on_unit_sphere.py usr/lib/python3.15/dist-packages/scitbx/tests/tst_smoothing.py usr/lib/python3.15/dist-packages/scitbx/wigner/ usr/lib/python3.15/dist-packages/scitbx/wigner/__init__.py usr/lib/python3.15/dist-packages/scitbx/wigner/tst_wigner3j.py usr/lib/python3.15/dist-packages/serialtbx/ usr/lib/python3.15/dist-packages/serialtbx/__init__.py usr/lib/python3.15/dist-packages/serialtbx/detector/ usr/lib/python3.15/dist-packages/serialtbx/detector/__init__.py usr/lib/python3.15/dist-packages/serialtbx/detector/cspad.py usr/lib/python3.15/dist-packages/serialtbx/detector/jungfrau.py usr/lib/python3.15/dist-packages/serialtbx/detector/rayonix.py usr/lib/python3.15/dist-packages/serialtbx/detector/xtc.py usr/lib/python3.15/dist-packages/serialtbx/detector/legacy_metrology/ usr/lib/python3.15/dist-packages/serialtbx/detector/legacy_metrology/__init__.py usr/lib/python3.15/dist-packages/serialtbx/detector/legacy_metrology/cspad_detector.py usr/lib/python3.15/dist-packages/serialtbx/detector/legacy_metrology/generic_detector.py usr/lib/python3.15/dist-packages/serialtbx/detector/legacy_metrology/metrology.py usr/lib/python3.15/dist-packages/serialtbx/mono_simulation/ usr/lib/python3.15/dist-packages/serialtbx/mono_simulation/__init__.py usr/lib/python3.15/dist-packages/serialtbx/mono_simulation/max_like.py usr/lib/python3.15/dist-packages/serialtbx/mono_simulation/util.py usr/lib/python3.15/dist-packages/serialtbx/util/ usr/lib/python3.15/dist-packages/serialtbx/util/__init__.py usr/lib/python3.15/dist-packages/serialtbx/util/construct_frame.py usr/lib/python3.15/dist-packages/serialtbx/util/energy_scan_notch_finder.py usr/lib/python3.15/dist-packages/serialtbx/util/time.py usr/lib/python3.15/dist-packages/simtbx/ usr/lib/python3.15/dist-packages/simtbx/__init__.py usr/lib/python3.15/dist-packages/simtbx/run_tests.py usr/lib/python3.15/dist-packages/simtbx/diffBragg/ usr/lib/python3.15/dist-packages/simtbx/diffBragg/__init__.py usr/lib/python3.15/dist-packages/simtbx/diffBragg/attr_list.py usr/lib/python3.15/dist-packages/simtbx/diffBragg/device.py usr/lib/python3.15/dist-packages/simtbx/diffBragg/ensemble_refine_launcher.py usr/lib/python3.15/dist-packages/simtbx/diffBragg/hopper_ensemble_utils.py usr/lib/python3.15/dist-packages/simtbx/diffBragg/hopper_io.py usr/lib/python3.15/dist-packages/simtbx/diffBragg/hopper_utils.py usr/lib/python3.15/dist-packages/simtbx/diffBragg/mpi_logger.py usr/lib/python3.15/dist-packages/simtbx/diffBragg/parameter_errors.py usr/lib/python3.15/dist-packages/simtbx/diffBragg/phil.py usr/lib/python3.15/dist-packages/simtbx/diffBragg/prep_stage2_input.py usr/lib/python3.15/dist-packages/simtbx/diffBragg/psf.py usr/lib/python3.15/dist-packages/simtbx/diffBragg/stage_two_utils.py usr/lib/python3.15/dist-packages/simtbx/diffBragg/utils.py usr/lib/python3.15/dist-packages/simtbx/diffBragg/refiners/ usr/lib/python3.15/dist-packages/simtbx/diffBragg/refiners/__init__.py usr/lib/python3.15/dist-packages/simtbx/diffBragg/refiners/base_refiner.py usr/lib/python3.15/dist-packages/simtbx/diffBragg/refiners/geometry.py usr/lib/python3.15/dist-packages/simtbx/diffBragg/refiners/parameters.py usr/lib/python3.15/dist-packages/simtbx/diffBragg/refiners/stage_two_refiner.py usr/lib/python3.15/dist-packages/simtbx/diffBragg/refiners/crystal_systems/ usr/lib/python3.15/dist-packages/simtbx/diffBragg/refiners/crystal_systems/__init__.py usr/lib/python3.15/dist-packages/simtbx/diffBragg/refiners/crystal_systems/hexagonal.py usr/lib/python3.15/dist-packages/simtbx/diffBragg/refiners/crystal_systems/manager.py usr/lib/python3.15/dist-packages/simtbx/diffBragg/refiners/crystal_systems/monoclinic.py usr/lib/python3.15/dist-packages/simtbx/diffBragg/refiners/crystal_systems/orthorhombic.py usr/lib/python3.15/dist-packages/simtbx/diffBragg/refiners/crystal_systems/tetragonal.py usr/lib/python3.15/dist-packages/simtbx/gpu/ usr/lib/python3.15/dist-packages/simtbx/gpu/__init__.py usr/lib/python3.15/dist-packages/simtbx/gpu/tst_exafel_api.py usr/lib/python3.15/dist-packages/simtbx/gpu/tst_gpu_multisource_background.py usr/lib/python3.15/dist-packages/simtbx/gpu/tst_shoeboxes.py usr/lib/python3.15/dist-packages/simtbx/kokkos/ usr/lib/python3.15/dist-packages/simtbx/kokkos/__init__.py usr/lib/python3.15/dist-packages/simtbx/kokkos/tst_kokkos_lib.py usr/lib/python3.15/dist-packages/simtbx/modeling/ usr/lib/python3.15/dist-packages/simtbx/modeling/FormatHDF5AttributeGeometry.py usr/lib/python3.15/dist-packages/simtbx/modeling/__init__.py usr/lib/python3.15/dist-packages/simtbx/modeling/forward_models.py usr/lib/python3.15/dist-packages/simtbx/modeling/predictions.py usr/lib/python3.15/dist-packages/simtbx/nanoBragg/ usr/lib/python3.15/dist-packages/simtbx/nanoBragg/__init__.py usr/lib/python3.15/dist-packages/simtbx/nanoBragg/anisotropic_mosaicity.py usr/lib/python3.15/dist-packages/simtbx/nanoBragg/nanoBragg_beam.py usr/lib/python3.15/dist-packages/simtbx/nanoBragg/nanoBragg_crystal.py usr/lib/python3.15/dist-packages/simtbx/nanoBragg/nanoBragg_gui_dialogs.py usr/lib/python3.15/dist-packages/simtbx/nanoBragg/nanoBragg_gui_frames.py usr/lib/python3.15/dist-packages/simtbx/nanoBragg/nanoBragg_gui_init.py usr/lib/python3.15/dist-packages/simtbx/nanoBragg/nanoBragg_input.py usr/lib/python3.15/dist-packages/simtbx/nanoBragg/nanoBragg_threads.py usr/lib/python3.15/dist-packages/simtbx/nanoBragg/sim_data.py usr/lib/python3.15/dist-packages/simtbx/nanoBragg/tst_anisotropic_mosaicity.py usr/lib/python3.15/dist-packages/simtbx/nanoBragg/tst_gauss_argchk.py usr/lib/python3.15/dist-packages/simtbx/nanoBragg/tst_gaussian_mosaicity.py usr/lib/python3.15/dist-packages/simtbx/nanoBragg/tst_gaussian_mosaicity2.py usr/lib/python3.15/dist-packages/simtbx/nanoBragg/tst_multisource_background.py usr/lib/python3.15/dist-packages/simtbx/nanoBragg/tst_nanoBragg_basic.py usr/lib/python3.15/dist-packages/simtbx/nanoBragg/tst_nanoBragg_cbf_write.py usr/lib/python3.15/dist-packages/simtbx/nanoBragg/tst_nanoBragg_minimal.py usr/lib/python3.15/dist-packages/simtbx/nanoBragg/tst_nanoBragg_mosaic.py usr/lib/python3.15/dist-packages/simtbx/nanoBragg/tst_nanoBragg_multipanel.py usr/lib/python3.15/dist-packages/simtbx/nanoBragg/tst_nanoBragg_pilatus.py usr/lib/python3.15/dist-packages/simtbx/nanoBragg/utils.py usr/lib/python3.15/dist-packages/simtbx/pixel/ usr/lib/python3.15/dist-packages/simtbx/pixel/__init__.py usr/lib/python3.15/dist-packages/smtbx/ usr/lib/python3.15/dist-packages/smtbx/__init__.py usr/lib/python3.15/dist-packages/smtbx/development.py usr/lib/python3.15/dist-packages/smtbx/libtbx_refresh.py usr/lib/python3.15/dist-packages/smtbx/run_tests.py usr/lib/python3.15/dist-packages/smtbx/utils.py usr/lib/python3.15/dist-packages/smtbx/ab_initio/ usr/lib/python3.15/dist-packages/smtbx/ab_initio/__init__.py usr/lib/python3.15/dist-packages/smtbx/ab_initio/charge_flipping.py usr/lib/python3.15/dist-packages/smtbx/ab_initio/tests/ usr/lib/python3.15/dist-packages/smtbx/ab_initio/tests/__init__.py usr/lib/python3.15/dist-packages/smtbx/ab_initio/tests/tst_ab_initio_ext.py usr/lib/python3.15/dist-packages/smtbx/ab_initio/tests/tst_charge_flipping.py usr/lib/python3.15/dist-packages/smtbx/absolute_structure/ usr/lib/python3.15/dist-packages/smtbx/absolute_structure/__init__.py usr/lib/python3.15/dist-packages/smtbx/array_family/ usr/lib/python3.15/dist-packages/smtbx/array_family/__init__.py usr/lib/python3.15/dist-packages/smtbx/command_line/ usr/lib/python3.15/dist-packages/smtbx/command_line/__init__.py usr/lib/python3.15/dist-packages/smtbx/command_line/absolute_structure.py usr/lib/python3.15/dist-packages/smtbx/command_line/anom_refine.py usr/lib/python3.15/dist-packages/smtbx/command_line/benchmark_refinement.py usr/lib/python3.15/dist-packages/smtbx/command_line/masks.py usr/lib/python3.15/dist-packages/smtbx/command_line/refine.py usr/lib/python3.15/dist-packages/smtbx/masks/ usr/lib/python3.15/dist-packages/smtbx/masks/__init__.py usr/lib/python3.15/dist-packages/smtbx/refinement/ usr/lib/python3.15/dist-packages/smtbx/refinement/__init__.py usr/lib/python3.15/dist-packages/smtbx/refinement/least_squares.py usr/lib/python3.15/dist-packages/smtbx/refinement/weighting_schemes.py usr/lib/python3.15/dist-packages/smtbx/refinement/constraints/ usr/lib/python3.15/dist-packages/smtbx/refinement/constraints/__init__.py usr/lib/python3.15/dist-packages/smtbx/refinement/constraints/adp.py usr/lib/python3.15/dist-packages/smtbx/refinement/constraints/all.py usr/lib/python3.15/dist-packages/smtbx/refinement/constraints/fpfdp.py usr/lib/python3.15/dist-packages/smtbx/refinement/constraints/occupancy.py usr/lib/python3.15/dist-packages/smtbx/refinement/constraints/rigid.py usr/lib/python3.15/dist-packages/smtbx/refinement/constraints/site.py usr/lib/python3.15/dist-packages/smtbx/refinement/constraints/geometrical/ usr/lib/python3.15/dist-packages/smtbx/refinement/constraints/geometrical/__init__.py usr/lib/python3.15/dist-packages/smtbx/refinement/constraints/geometrical/all.py usr/lib/python3.15/dist-packages/smtbx/refinement/constraints/geometrical/hydrogens.py usr/lib/python3.15/dist-packages/smtbx/refinement/constraints/tests/ usr/lib/python3.15/dist-packages/smtbx/refinement/constraints/tests/__init__.py usr/lib/python3.15/dist-packages/smtbx/refinement/constraints/tests/tst_constrained_structure.py usr/lib/python3.15/dist-packages/smtbx/refinement/constraints/tests/tst_direction.py usr/lib/python3.15/dist-packages/smtbx/refinement/constraints/tests/tst_disorder.py usr/lib/python3.15/dist-packages/smtbx/refinement/constraints/tests/tst_lbfgs.py usr/lib/python3.15/dist-packages/smtbx/refinement/constraints/tests/tst_occupancies.py usr/lib/python3.15/dist-packages/smtbx/refinement/constraints/tests/tst_reparametrisation.py usr/lib/python3.15/dist-packages/smtbx/refinement/constraints/tests/tst_rigid.py usr/lib/python3.15/dist-packages/smtbx/refinement/constraints/tests/tst_same_group.py usr/lib/python3.15/dist-packages/smtbx/refinement/restraints/ usr/lib/python3.15/dist-packages/smtbx/refinement/restraints/__init__.py usr/lib/python3.15/dist-packages/smtbx/refinement/restraints/adp_restraints.py usr/lib/python3.15/dist-packages/smtbx/refinement/restraints/origin_fixing_restraints.py usr/lib/python3.15/dist-packages/smtbx/regression/ usr/lib/python3.15/dist-packages/smtbx/regression/__init__.py usr/lib/python3.15/dist-packages/smtbx/regression/tst_commandline_anomrefine.py usr/lib/python3.15/dist-packages/smtbx/regression/tst_commandline_refine.py usr/lib/python3.15/dist-packages/smtbx/regression/test_data/ usr/lib/python3.15/dist-packages/smtbx/regression/test_data/__init__.py usr/lib/python3.15/dist-packages/smtbx/source_generators/ usr/lib/python3.15/dist-packages/smtbx/source_generators/__init__.py usr/lib/python3.15/dist-packages/smtbx/source_generators/flex_fwd_h.py usr/lib/python3.15/dist-packages/smtbx/stl/ usr/lib/python3.15/dist-packages/smtbx/stl/__init__.py usr/lib/python3.15/dist-packages/smtbx/stl/map.py usr/lib/python3.15/dist-packages/smtbx/structure_factors/ usr/lib/python3.15/dist-packages/smtbx/structure_factors/__init__.py usr/lib/python3.15/dist-packages/smtbx/structure_factors/direct/ usr/lib/python3.15/dist-packages/smtbx/structure_factors/direct/__init__.py usr/lib/python3.15/dist-packages/spotfinder/ usr/lib/python3.15/dist-packages/spotfinder/__init__.py usr/lib/python3.15/dist-packages/spotfinder/exception.py usr/lib/python3.15/dist-packages/spotfinder/run_tests.py usr/lib/python3.15/dist-packages/spotfinder/applications/ usr/lib/python3.15/dist-packages/spotfinder/applications/__init__.py usr/lib/python3.15/dist-packages/spotfinder/applications/image_viewer.py usr/lib/python3.15/dist-packages/spotfinder/applications/practical_heuristics.py usr/lib/python3.15/dist-packages/spotfinder/applications/signal_strength.py usr/lib/python3.15/dist-packages/spotfinder/applications/stats_distl.py usr/lib/python3.15/dist-packages/spotfinder/applications/wrappers.py usr/lib/python3.15/dist-packages/spotfinder/applications/heuristic_tbx/ usr/lib/python3.15/dist-packages/spotfinder/applications/heuristic_tbx/__init__.py usr/lib/python3.15/dist-packages/spotfinder/applications/heuristic_tbx/ice2.py usr/lib/python3.15/dist-packages/spotfinder/applications/heuristic_tbx/ice_nztt.py usr/lib/python3.15/dist-packages/spotfinder/applications/heuristic_tbx/method2_resolution.py usr/lib/python3.15/dist-packages/spotfinder/applications/heuristic_tbx/spotreporter.py usr/lib/python3.15/dist-packages/spotfinder/applications/xfel/ usr/lib/python3.15/dist-packages/spotfinder/applications/xfel/__init__.py usr/lib/python3.15/dist-packages/spotfinder/applications/xfel/correction_vector_plot.py usr/lib/python3.15/dist-packages/spotfinder/applications/xfel/cxi_phil.py usr/lib/python3.15/dist-packages/spotfinder/applications/xfel/cxi_run3.py usr/lib/python3.15/dist-packages/spotfinder/array_family/ usr/lib/python3.15/dist-packages/spotfinder/array_family/__init__.py usr/lib/python3.15/dist-packages/spotfinder/array_family/flex.py usr/lib/python3.15/dist-packages/spotfinder/command_line/ usr/lib/python3.15/dist-packages/spotfinder/command_line/__init__.py usr/lib/python3.15/dist-packages/spotfinder/command_line/find_active_area.py usr/lib/python3.15/dist-packages/spotfinder/command_line/image_viewer.py usr/lib/python3.15/dist-packages/spotfinder/command_line/mp_spotfinder_server_read_file.py usr/lib/python3.15/dist-packages/spotfinder/command_line/signal_strength.py usr/lib/python3.15/dist-packages/spotfinder/command_line/sweep_strength.py usr/lib/python3.15/dist-packages/spotfinder/command_line/thin_client.py usr/lib/python3.15/dist-packages/spotfinder/core_toolbox/ usr/lib/python3.15/dist-packages/spotfinder/core_toolbox/__init__.py usr/lib/python3.15/dist-packages/spotfinder/core_toolbox/close_spots_detail.py usr/lib/python3.15/dist-packages/spotfinder/diffraction/ usr/lib/python3.15/dist-packages/spotfinder/diffraction/__init__.py usr/lib/python3.15/dist-packages/spotfinder/diffraction/geometry.py usr/lib/python3.15/dist-packages/spotfinder/diffraction/imagefiles.py usr/lib/python3.15/dist-packages/spotfinder/dxtbx_toolbox/ usr/lib/python3.15/dist-packages/spotfinder/dxtbx_toolbox/__init__.py usr/lib/python3.15/dist-packages/spotfinder/dxtbx_toolbox/practical_heuristics.py usr/lib/python3.15/dist-packages/spotfinder/math_support/ usr/lib/python3.15/dist-packages/spotfinder/math_support/__init__.py usr/lib/python3.15/dist-packages/spotfinder/math_support/sphere_formulae.py usr/lib/python3.15/dist-packages/spotfinder/servers/ usr/lib/python3.15/dist-packages/spotfinder/servers/__init__.py usr/lib/python3.15/dist-packages/spotfinder/servers/adsc_client.py usr/lib/python3.15/dist-packages/spotfinder/servers/apache.py usr/lib/python3.15/dist-packages/spotfinder/servers/apache_bcsb.py usr/lib/python3.15/dist-packages/spotfinder/servers/apache_dials.py usr/lib/python3.15/dist-packages/spotfinder/servers/apache_utils.py usr/lib/python3.15/dist-packages/spotfinder/servers/bcsb_client_example.py usr/lib/python3.15/dist-packages/spotfinder/servers/general_client_example.py usr/lib/python3.15/dist-packages/spotfinder/servers/mp_spotfinder_server_is_alive.py usr/lib/python3.15/dist-packages/spotfinder/servers/mp_spotfinder_server_read_file.py usr/lib/python3.15/dist-packages/spotfinder/servers/multipart_encoder.py usr/lib/python3.15/dist-packages/spotfinder/servers/pilatus_client.py usr/lib/python3.15/dist-packages/spotfinder/servers/specific_client_example.py usr/lib/python3.15/dist-packages/spotfinder/servers/spotfinder_server_client_push.py usr/lib/python3.15/dist-packages/spotfinder/servers/spotfinder_server_read_file.py usr/lib/python3.15/dist-packages/spotfinder/servers/thin_client.py usr/lib/python3.15/dist-packages/wxtbx/ usr/lib/python3.15/dist-packages/wxtbx/__init__.py usr/lib/python3.15/dist-packages/wxtbx/adp_statistics.py usr/lib/python3.15/dist-packages/wxtbx/anomalous_scattering.py usr/lib/python3.15/dist-packages/wxtbx/app.py usr/lib/python3.15/dist-packages/wxtbx/b_plot.py usr/lib/python3.15/dist-packages/wxtbx/bitmaps.py usr/lib/python3.15/dist-packages/wxtbx/browser.py usr/lib/python3.15/dist-packages/wxtbx/checklistctrl.py usr/lib/python3.15/dist-packages/wxtbx/custom_restraints.py usr/lib/python3.15/dist-packages/wxtbx/ensemble_validation.py usr/lib/python3.15/dist-packages/wxtbx/errors.py usr/lib/python3.15/dist-packages/wxtbx/heavy_atoms.py usr/lib/python3.15/dist-packages/wxtbx/icons.py usr/lib/python3.15/dist-packages/wxtbx/info_panels.py usr/lib/python3.15/dist-packages/wxtbx/layout.py usr/lib/python3.15/dist-packages/wxtbx/listeditor.py usr/lib/python3.15/dist-packages/wxtbx/metallicbutton.py usr/lib/python3.15/dist-packages/wxtbx/misc_dialogs.py usr/lib/python3.15/dist-packages/wxtbx/monitor.py usr/lib/python3.15/dist-packages/wxtbx/mtz_dump.py usr/lib/python3.15/dist-packages/wxtbx/path_dialogs.py usr/lib/python3.15/dist-packages/wxtbx/pdb_editor.py usr/lib/python3.15/dist-packages/wxtbx/polygon.py usr/lib/python3.15/dist-packages/wxtbx/polygon_db_viewer.py usr/lib/python3.15/dist-packages/wxtbx/process_control.py usr/lib/python3.15/dist-packages/wxtbx/qstat_view.py usr/lib/python3.15/dist-packages/wxtbx/run_tests.py usr/lib/python3.15/dist-packages/wxtbx/segmentedctrl.py usr/lib/python3.15/dist-packages/wxtbx/sequence_view.py usr/lib/python3.15/dist-packages/wxtbx/symmetry_dialog.py usr/lib/python3.15/dist-packages/wxtbx/tables.py usr/lib/python3.15/dist-packages/wxtbx/utils.py usr/lib/python3.15/dist-packages/wxtbx/windows.py usr/lib/python3.15/dist-packages/wxtbx/xtriage.py usr/lib/python3.15/dist-packages/wxtbx/command_line/ usr/lib/python3.15/dist-packages/wxtbx/command_line/__init__.py usr/lib/python3.15/dist-packages/wxtbx/command_line/anomalous_differences_histogram.py usr/lib/python3.15/dist-packages/wxtbx/command_line/b_plot.py usr/lib/python3.15/dist-packages/wxtbx/command_line/inspect_r_free_flags.py usr/lib/python3.15/dist-packages/wxtbx/command_line/loggraph.py usr/lib/python3.15/dist-packages/wxtbx/command_line/pdb_editor.py usr/lib/python3.15/dist-packages/wxtbx/command_line/pdb_statistics.py usr/lib/python3.15/dist-packages/wxtbx/command_line/plan_sad_experiment.py usr/lib/python3.15/dist-packages/wxtbx/command_line/plot_anomalous_scattering.py usr/lib/python3.15/dist-packages/wxtbx/command_line/show_file_info.py usr/lib/python3.15/dist-packages/wxtbx/command_line/wxpython.py usr/lib/python3.15/dist-packages/wxtbx/command_line/xtriage.py usr/lib/python3.15/dist-packages/wxtbx/phil_controls/ usr/lib/python3.15/dist-packages/wxtbx/phil_controls/__init__.py usr/lib/python3.15/dist-packages/wxtbx/phil_controls/array_label.py usr/lib/python3.15/dist-packages/wxtbx/phil_controls/boolctrl.py usr/lib/python3.15/dist-packages/wxtbx/phil_controls/choice.py usr/lib/python3.15/dist-packages/wxtbx/phil_controls/choice_multi.py usr/lib/python3.15/dist-packages/wxtbx/phil_controls/floatctrl.py usr/lib/python3.15/dist-packages/wxtbx/phil_controls/floats.py usr/lib/python3.15/dist-packages/wxtbx/phil_controls/intctrl.py usr/lib/python3.15/dist-packages/wxtbx/phil_controls/ints.py usr/lib/python3.15/dist-packages/wxtbx/phil_controls/misc_ctrls.py usr/lib/python3.15/dist-packages/wxtbx/phil_controls/numbers.py usr/lib/python3.15/dist-packages/wxtbx/phil_controls/path.py usr/lib/python3.15/dist-packages/wxtbx/phil_controls/simple_dialogs.py usr/lib/python3.15/dist-packages/wxtbx/phil_controls/space_group.py usr/lib/python3.15/dist-packages/wxtbx/phil_controls/strctrl.py usr/lib/python3.15/dist-packages/wxtbx/phil_controls/strings.py usr/lib/python3.15/dist-packages/wxtbx/phil_controls/symop.py usr/lib/python3.15/dist-packages/wxtbx/phil_controls/text_base.py usr/lib/python3.15/dist-packages/wxtbx/phil_controls/tree.py usr/lib/python3.15/dist-packages/wxtbx/phil_controls/tribool.py usr/lib/python3.15/dist-packages/wxtbx/phil_controls/unit_cell.py usr/lib/python3.15/dist-packages/wxtbx/plots/ usr/lib/python3.15/dist-packages/wxtbx/plots/__init__.py usr/lib/python3.15/dist-packages/wxtbx/plots/emringer.py usr/lib/python3.15/dist-packages/wxtbx/plots/molprobity.py usr/lib/python3.15/dist-packages/wxtbx/regression/ usr/lib/python3.15/dist-packages/wxtbx/regression/__init__.py usr/lib/python3.15/dist-packages/wxtbx/regression/_headless_construct_cases.py usr/lib/python3.15/dist-packages/wxtbx/regression/_warnings.py usr/lib/python3.15/dist-packages/wxtbx/regression/tst_b_plot.py usr/lib/python3.15/dist-packages/wxtbx/regression/tst_headless_construct.py usr/lib/python3.15/dist-packages/wxtbx/regression/tst_imports.py usr/lib/python3.15/dist-packages/wxtbx/regression/tst_process_control.py usr/lib/python3.15/dist-packages/wxtbx/reports/ usr/lib/python3.15/dist-packages/wxtbx/reports/__init__.py usr/lib/python3.15/dist-packages/wxtbx/reports/blast.py usr/lib/python3.15/dist-packages/wxtbx/reports/pdb_symmetry.py usr/lib/python3.15/dist-packages/xcif/ usr/lib/python3.15/dist-packages/xcif/__init__.py usr/lib/python3.15/dist-packages/xcif/run_tests.py usr/lib/python3.15/dist-packages/xcif/benchmarks/ usr/lib/python3.15/dist-packages/xcif/benchmarks/__init__.py usr/lib/python3.15/dist-packages/xcif/benchmarks/run_benchmarks.py usr/lib/python3.15/dist-packages/xcif/regression/ usr/lib/python3.15/dist-packages/xcif/regression/__init__.py usr/lib/python3.15/dist-packages/xcif/regression/tst_api_compat.py usr/lib/python3.15/dist-packages/xcif/regression/tst_bindings.py usr/lib/python3.15/dist-packages/xcif/regression/tst_example_parse.py usr/lib/python3.15/dist-packages/xcif/regression/tst_example_tokenize.py usr/lib/python3.15/dist-packages/xcif/regression/tst_gil_release.py usr/lib/python3.15/dist-packages/xcif/regression/tst_iotbx_cif_reader_engine.py usr/lib/python3.15/dist-packages/xcif/regression/tst_iotbx_cif_reader_parity.py usr/lib/python3.15/dist-packages/xcif/regression/tst_memory.py usr/lib/python3.15/dist-packages/xcif/regression/tst_non_strict_mode.py usr/lib/python3.15/dist-packages/xcif/regression/tst_parse_verify.py usr/lib/python3.15/dist-packages/xcif/regression/tst_pdb_coordinates.py usr/lib/python3.15/dist-packages/xcif/regression/tst_pdb_sf.py usr/lib/python3.15/dist-packages/xcif/regression/tst_quoted_string_delimiter.py usr/lib/python3.15/dist-packages/xcif/regression/tst_roundtrip.py usr/lib/python3.15/dist-packages/xcif/regression/tst_semicolon_field_strict.py usr/lib/python3.15/dist-packages/xcif/regression/tst_string_interning.py usr/lib/python3.15/dist-packages/xcif/regression/tst_utf8.py sent 2,283,570,348 bytes received 156,036 bytes 415,222,978.91 bytes/sec total size is 2,282,428,289 speedup is 1.00 dh_auto_build -- --name cctbx -s custom --build-args="debian/install-cctbx.sh -- --destdir=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp --pyver={version} --srcdir=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 --builddir={build_dir}_ --modules='annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif'" pybuild --build -i python{version} -p "3.15 3.14" --name cctbx -s custom --build-args="debian/install-cctbx.sh -- --destdir=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp --pyver={version} --srcdir=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 --builddir={build_dir}_ --modules='annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif'" --parallel=8 I: pybuild base:383: debian/install-cctbx.sh -- --destdir=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp --pyver=3.15 --srcdir=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 --builddir='/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build'_ --modules='annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif' debian/install-cctbx.sh: line 7: 0: command not found --destdir '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp' --pyver '3.15' --srcdir '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' --builddir '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_' --modules 'annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif' -- Installing CCTBX into a FHS system Modules: annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif From the source /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 and build /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_ To the FHS : destdir /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp pyver 3.15 bindir /usr/bin incdir /usr/include pkglibdir /usr/lib/cctbx/python3.15 libdir /usr/lib/loongarch64-linux-gnu pythondir /usr/lib/python3.15/dist-packages with PYTHONPATH /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build Copying libtbx_env from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.15_cctbx/build_ to /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15 {'_dispatcher_include_at_start': [], '_dispatcher_include_before_command': [], '_dispatcher_precall_commands': None, '_dispatcher_registry': {relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/annlib.python"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="/usr/bin/python3.15"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/annlib.show_build_path"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/annlib.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/boost.gcd"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../boost_adaptbx/command_line/gcd.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/boost.lcm"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../boost_adaptbx/command_line/lcm.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/boost.python"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="/usr/bin/python3.15"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/boost.show_build_path"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/boost.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/boost_adaptbx.divide_by_zero"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../boost_adaptbx/command_line/divide_by_zero.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/boost_adaptbx.double_overflow"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../boost_adaptbx/command_line/double_overflow.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/boost_adaptbx.inexact"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../boost_adaptbx/command_line/inexact.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/boost_adaptbx.int_overflow"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../boost_adaptbx/command_line/int_overflow.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/boost_adaptbx.nested_cpp_loops_with_check_signals"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/boost_adaptbx.segmentation_fault"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../boost_adaptbx/command_line/segmentation_fault.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/boost_adaptbx.show_environ_usage"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../boost_adaptbx/command_line/show_environ_usage.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/boost_adaptbx.show_platform_info"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../boost_adaptbx/command_line/show_platform_info.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cbf.dump"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../cbflib_adaptbx/command_line/dump.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cbflib.python"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="/usr/bin/python3.15"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cbflib.show_build_path"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cbflib.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/ccp4io.python"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="/usr/bin/python3.15"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/ccp4io.show_build_path"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/ccp4io.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cctbx.HKLinfo"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../crys3d/command_line/HKLinfo.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cctbx.HKLviewer"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../crys3d/command_line/HKLviewer.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cctbx.brehm_diederichs"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../cctbx/command_line/brehm_diederichs.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cctbx.cod_select_and_pickle"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../cctbx/command_line/cod_select_and_pickle.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cctbx.data_viewer"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../crys3d/command_line/hklview.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cctbx.eltbx.show_fp_fdp"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../cctbx/command_line/eltbx.show_fp_fdp.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cctbx.euclidean_model_matching"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../cctbx/command_line/euclidean_model_matching.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cctbx.image_viewer"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../rstbx/command_line/slip_viewer.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cctbx.loggraph"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../wxtbx/command_line/loggraph.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cctbx.make_install_HKLviewer_ChimeraX"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../crys3d/command_line/make_install_HKLviewer_ChimeraX.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cctbx.multiplicity_viewer"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../crys3d/command_line/multiplicity_viewer.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cctbx.patterson_map"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../iotbx/command_line/patterson_map.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cctbx.plot_anomalous_scattering"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../wxtbx/command_line/plot_anomalous_scattering.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cctbx.precession_view"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../cctbx/command_line/precession_view.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cctbx.python"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="/usr/bin/python3.15"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cctbx.show_build_path"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cctbx.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cctbx.show_systematic_absences"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../iotbx/command_line/show_systematic_absences.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cctbx.space_group_info"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../cctbx/command_line/space_group_info.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cctbx.structure_factor_timings"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../cctbx/command_line/structure_factor_timings.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cctbx.subgroups"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../cctbx/command_line/subgroups.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cctbx.suitename"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../mmtbx/command_line/suitename.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cctbx.suitename_old"): 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relocatable="bin/cctbx.wavelength_units"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../cctbx/command_line/wavelength_units.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cctbx.web.install"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../cctbx/command_line/web.install.csh"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="bin/cctbx.wxpython"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../wxtbx/command_line/wxpython.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", 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relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../chiltbx"), 'cma_es': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../cma_es"), 'crys3d': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../crys3d"), 'dxtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../dxtbx"), 'fable': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../fable"), 'gltbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../gltbx"), 'iotbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../iotbx"), 'libtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../libtbx"), 'mmtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../mmtbx"), 'omptbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../omptbx"), 'rstbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../rstbx"), 'scitbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../scitbx"), 'serialtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../serialtbx"), 'smtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../smtbx"), 'spotfinder': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../spotfinder"), 'tbxx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../tbxx"), 'ucif': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../ucif"), 'wxtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../wxtbx"), 'xcif': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../xcif")}, 'module_list': [, , , , , , , , , , , , , , , , , , , , , , , ], 'no_bin_python': False, 'path_utility': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../libtbx/command_line/path_utility.py"), 'python_exe': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="/usr/bin/python3.15"), 'python_version_major_minor': (3, 15), 'pythonpath': [relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../.."), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../dxtbx/src"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../../boost_adaptbx"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="lib"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="/usr/lib/python3.15/dist-packages"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="/usr/lib/python3/dist-packages"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="/usr/local/lib/python3.15/dist-packages")], 'relocatable': True, 'repository_paths': [relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.15", relocatable="../../..")], 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relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/boost_adaptbx/command_line/gcd.py"), relocatable_path(anchor="/usr", relocatable="bin/boost.lcm"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/boost_adaptbx/command_line/lcm.py"), relocatable_path(anchor="/usr", relocatable="bin/boost.python"): relocatable_path(anchor="/usr", relocatable="bin/python3.15"), relocatable_path(anchor="/usr", relocatable="bin/boost.show_build_path"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/usr", relocatable="bin/boost.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/boost_adaptbx.divide_by_zero"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/boost_adaptbx/command_line/divide_by_zero.py"), relocatable_path(anchor="/usr", relocatable="bin/boost_adaptbx.double_overflow"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/boost_adaptbx/command_line/double_overflow.py"), relocatable_path(anchor="/usr", relocatable="bin/boost_adaptbx.inexact"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/boost_adaptbx/command_line/inexact.py"), relocatable_path(anchor="/usr", relocatable="bin/boost_adaptbx.int_overflow"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/boost_adaptbx/command_line/int_overflow.py"), relocatable_path(anchor="/usr", relocatable="bin/boost_adaptbx.nested_cpp_loops_with_check_signals"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py"), relocatable_path(anchor="/usr", relocatable="bin/boost_adaptbx.segmentation_fault"): relocatable_path(anchor="/usr", 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relocatable_path(anchor="/usr", relocatable="bin/cbflib.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/ccp4io.python"): relocatable_path(anchor="/usr", relocatable="bin/python3.15"), relocatable_path(anchor="/usr", relocatable="bin/ccp4io.show_build_path"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/usr", relocatable="bin/ccp4io.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.HKLinfo"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/crys3d/command_line/HKLinfo.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.HKLviewer"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/crys3d/command_line/HKLviewer.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.brehm_diederichs"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/cctbx/command_line/brehm_diederichs.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.cod_select_and_pickle"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/cctbx/command_line/cod_select_and_pickle.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.data_viewer"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/crys3d/command_line/hklview.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.eltbx.show_fp_fdp"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/cctbx/command_line/eltbx.show_fp_fdp.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.euclidean_model_matching"): relocatable_path(anchor="/usr", 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relocatable_path(anchor="/usr", relocatable="bin/cctbx.show_systematic_absences"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/iotbx/command_line/show_systematic_absences.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.space_group_info"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/cctbx/command_line/space_group_info.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.structure_factor_timings"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/cctbx/command_line/structure_factor_timings.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.subgroups"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/cctbx/command_line/subgroups.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.suitename"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/suitename.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.suitename_old"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx/command_line/suitename_old.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.version"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/cctbx/command_line/version.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.visualize_r_factors"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/crys3d/command_line/visualize_r_factors.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.wavelength_units"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/cctbx/command_line/wavelength_units.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.web.install"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/cctbx/command_line/web.install.csh"), relocatable_path(anchor="/usr", relocatable="bin/cctbx.wxpython"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/wxpython.py"), relocatable_path(anchor="/usr", relocatable="bin/cctbx_regression.test_nightly"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/cctbx/command_line/cctbx_test_nightly.py"), relocatable_path(anchor="/usr", relocatable="bin/cma_es.python"): relocatable_path(anchor="/usr", relocatable="bin/python3.15"), relocatable_path(anchor="/usr", relocatable="bin/cma_es.show_build_path"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/usr", relocatable="bin/cma_es.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/crys3d.model_viewer"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/crys3d/command_line/model_viewer.py"), relocatable_path(anchor="/usr", relocatable="bin/crys3d.python"): relocatable_path(anchor="/usr", relocatable="bin/python3.15"), relocatable_path(anchor="/usr", relocatable="bin/crys3d.qttbx.view_structure"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/crys3d/command_line/qttbx.view_structure.py"), relocatable_path(anchor="/usr", relocatable="bin/crys3d.show_build_path"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/usr", relocatable="bin/crys3d.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/cxi.image2pickle"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/dxtbx/src/dxtbx/command_line/image2pickle.py"), relocatable_path(anchor="/usr", relocatable="bin/cxi.image_average"): relocatable_path(anchor="/usr", 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relocatable="bin/python3.15"), relocatable_path(anchor="/usr", relocatable="bin/wxtbx.show_build_path"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/usr", relocatable="bin/wxtbx.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/wxtbx.show_file_info"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/show_file_info.py"), relocatable_path(anchor="/usr", relocatable="bin/wxtbx.xtriage"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx/command_line/xtriage.py"), relocatable_path(anchor="/usr", relocatable="bin/xcif.python"): relocatable_path(anchor="/usr", relocatable="bin/python3.15"), relocatable_path(anchor="/usr", relocatable="bin/xcif.show_build_path"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/usr", relocatable="bin/xcif.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py")}, 'bin_path': relocatable_path(anchor="/usr", relocatable="bin"), 'boost_version': 109200, 'build_options': , 'build_path': absolute_path("/usr/lib/cctbx/python3.15"), 'command_line_redirections': {}, 'command_version_suffix': None, 'dispatcher_name': None, 'exe_path': relocatable_path(anchor="/usr", relocatable="bin"), 'explicitly_requested_modules': {'annlib', 'annlib_adaptbx', 'boost_adaptbx', 'cbflib_adaptbx', 'ccp4io', 'ccp4io_adaptbx', 'cctbx', 'cma_es', 'crys3d', 'dxtbx', 'fable', 'gltbx', 'iotbx', 'libtbx', 'mmtbx', 'omptbx', 'rstbx', 'scitbx', 'serialtbx', 'smtbx', 'spotfinder', 'tbxx', 'wxtbx', 'xcif'}, 'full_testing': False, 'include_path': relocatable_path(anchor="/usr", relocatable="include"), 'installed': True, 'installed_modules': [], 'installed_order': [], 'lib_path': relocatable_path(anchor="/usr", relocatable="lib"), 'missing_for_build': {'boost'}, 'missing_for_use': set(), 'missing_optional': {'cbflib', 'boost', 'reduce', 'probe', 'king', 'docutils'}, 'module_dict': {'annlib': , 'boost': , 'cbflib': , 'ccp4io': , 'cctbx': , 'chiltbx': , 'cma_es': , 'crys3d': , 'dxtbx': , 'fable': , 'gltbx': , 'iotbx': , 'libtbx': , 'mmtbx': , 'omptbx': , 'rstbx': , 'scitbx': , 'serialtbx': , 'smtbx': , 'spotfinder': , 'tbxx': , 'ucif': , 'wxtbx': , 'xcif': }, 'module_dist_paths': {'annlib': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/annlib"), 'annlib_adaptbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/annlib_adaptbx"), 'boost_adaptbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/boost_adaptbx"), 'cbflib_adaptbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/cbflib_adaptbx"), 'ccp4io': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/ccp4io"), 'ccp4io_adaptbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/ccp4io_adaptbx"), 'cctbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/cctbx"), 'chiltbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/chiltbx"), 'cma_es': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/cma_es"), 'crys3d': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/crys3d"), 'dxtbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/dxtbx"), 'fable': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/fable"), 'gltbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/gltbx"), 'iotbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/iotbx"), 'libtbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx"), 'mmtbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/mmtbx"), 'omptbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/omptbx"), 'rstbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/rstbx"), 'scitbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/scitbx"), 'serialtbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/serialtbx"), 'smtbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/smtbx"), 'spotfinder': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/spotfinder"), 'tbxx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/tbxx"), 'ucif': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/ucif"), 'wxtbx': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/wxtbx"), 'xcif': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/xcif")}, 'module_list': [, , , , , , , , , , , , , , , , , , , , , , , ], 'no_bin_python': True, 'path_utility': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/path_utility.py"), 'python_exe': relocatable_path(anchor="/usr", relocatable="bin/python3.15"), 'python_version_major_minor': (3, 15), 'pythonpath': [], 'relocatable': True, 'repository_paths': [relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages")], 'scons_dist_path': relocatable_path(anchor="/usr", relocatable=".")} building file list ... done ./ boost_adaptbx/ boost_adaptbx/tests/ boost_adaptbx/tests/tst_optional_copy iotbx/ iotbx/pdb/ iotbx/pdb/hybrid_36_fem scitbx/ scitbx/array_family/ scitbx/array_family/tst_accessors scitbx/array_family/tst_af_1 scitbx/array_family/tst_af_2 scitbx/array_family/tst_af_3 scitbx/array_family/tst_af_4 scitbx/array_family/tst_af_5 scitbx/array_family/tst_mat3 scitbx/array_family/tst_optional_copy scitbx/array_family/tst_rectangular_full_packed scitbx/array_family/tst_ref_matrix_facet scitbx/array_family/tst_sym_mat3 scitbx/array_family/tst_unsigned_float_arithmetic scitbx/array_family/tst_vec3 scitbx/error/ scitbx/error/tst_error scitbx/lbfgs/ scitbx/lbfgs/tst_lbfgs scitbx/math/ scitbx/math/tests/ scitbx/math/tests/tst scitbx/matrix/ scitbx/matrix/tests/ scitbx/matrix/tests/tst_cholesky scitbx/matrix/tests/tst_givens scitbx/matrix/tests/tst_householder scitbx/matrix/tests/tst_svd scitbx/serialization/ scitbx/serialization/tst_base_256 smtbx/ smtbx/refinement/ smtbx/refinement/constraints/ smtbx/refinement/constraints/tests/ smtbx/refinement/constraints/tests/tst_geometrical_hydrogens smtbx/refinement/constraints/tests/tst_reparametrisation smtbx/refinement/constraints/tests/tst_special_position sent 16,257,554 bytes received 568 bytes 32,516,244.00 bytes/sec total size is 16,245,752 speedup is 1.00 building file list ... done ./ libann_adaptor.so -> libann_adaptor.so.0.0.1 libann_adaptor.so.0 -> libann_adaptor.so.0.0.1 libann_adaptor.so.0.0.1 libasymmetric_map.so -> libasymmetric_map.so.0.0.1 libasymmetric_map.so.0 -> libasymmetric_map.so.0.0.1 libasymmetric_map.so.0.0.1 libcbf-private.so -> libcbf-private.so.0.0.1 libcbf-private.so.0 -> libcbf-private.so.0.0.1 libcbf-private.so.0.0.1 libccp4io.so -> libccp4io.so.0.0.1 libccp4io.so.0 -> libccp4io.so.0.0.1 libccp4io.so.0.0.1 libcctbx.so -> libcctbx.so.0.0.1 libcctbx.so.0 -> libcctbx.so.0.0.1 libcctbx.so.0.0.1 libcctbx_sgtbx_asu.so -> libcctbx_sgtbx_asu.so.0.0.1 libcctbx_sgtbx_asu.so.0 -> libcctbx_sgtbx_asu.so.0.0.1 libcctbx_sgtbx_asu.so.0.0.1 libdxtbxspotfinder.so -> libdxtbxspotfinder.so.0.0.1 libdxtbxspotfinder.so.0 -> libdxtbxspotfinder.so.0.0.1 libdxtbxspotfinder.so.0.0.1 libiotbx_mtz.so -> libiotbx_mtz.so.0.0.1 libiotbx_mtz.so.0 -> libiotbx_mtz.so.0.0.1 libiotbx_mtz.so.0.0.1 libiotbx_pdb.so -> libiotbx_pdb.so.0.0.1 libiotbx_pdb.so.0 -> libiotbx_pdb.so.0.0.1 libiotbx_pdb.so.0.0.1 libiotbx_xplor.so -> libiotbx_xplor.so.0.0.1 libiotbx_xplor.so.0 -> libiotbx_xplor.so.0.0.1 libiotbx_xplor.so.0.0.1 libmmtbx_masks.so -> libmmtbx_masks.so.0.0.1 libmmtbx_masks.so.0 -> libmmtbx_masks.so.0.0.1 libmmtbx_masks.so.0.0.1 libmmtbx_tls.so -> libmmtbx_tls.so.0.0.1 libmmtbx_tls.so.0 -> libmmtbx_tls.so.0.0.1 libmmtbx_tls.so.0.0.1 libomptbx.so -> libomptbx.so.0.0.1 libomptbx.so.0 -> libomptbx.so.0.0.1 libomptbx.so.0.0.1 librstbx.so -> librstbx.so.0.0.1 librstbx.so.0 -> librstbx.so.0.0.1 librstbx.so.0.0.1 libscitbx_boost_python.so -> libscitbx_boost_python.so.0.0.1 libscitbx_boost_python.so.0 -> libscitbx_boost_python.so.0.0.1 libscitbx_boost_python.so.0.0.1 libscitbx_minpack.so -> libscitbx_minpack.so.0.0.1 libscitbx_minpack.so.0 -> libscitbx_minpack.so.0.0.1 libscitbx_minpack.so.0.0.1 libscitbx_slatec.so -> libscitbx_slatec.so.0.0.1 libscitbx_slatec.so.0 -> libscitbx_slatec.so.0.0.1 libscitbx_slatec.so.0.0.1 libsmtbx_refinement_constraints.so -> libsmtbx_refinement_constraints.so.0.0.1 libsmtbx_refinement_constraints.so.0 -> libsmtbx_refinement_constraints.so.0.0.1 libsmtbx_refinement_constraints.so.0.0.1 libspotfinder.so -> libspotfinder.so.0.0.1 libspotfinder.so.0 -> libspotfinder.so.0.0.1 libspotfinder.so.0.0.1 libxcif.so -> libxcif.so.0.0.1 libxcif.so.0 -> libxcif.so.0.0.1 libxcif.so.0.0.1 sent 56,931,140 bytes received 519 bytes 113,863,318.00 bytes/sec total size is 56,914,186 speedup is 1.00 building file list ... done annlib_adaptbx/ annlib_adaptbx/ann_adaptor.h sent 2,230 bytes received 38 bytes 4,536.00 bytes/sec total size is 2,068 speedup is 0.91 building file list ... done boost_adaptbx/ boost_adaptbx/boost_range_python.hpp boost_adaptbx/convertible.h boost_adaptbx/exporting.hpp boost_adaptbx/floating_point_exceptions.h boost_adaptbx/hash.h boost_adaptbx/iterator_range.h boost_adaptbx/optional_conversions.h boost_adaptbx/precompiled.h boost_adaptbx/python_streambuf.h boost_adaptbx/std_pair_conversion.h boost_adaptbx/std_pair_fwd.h boost_adaptbx/swig_arg.hpp boost_adaptbx/tuple_conversion.h boost_adaptbx/graph/ boost_adaptbx/graph/graph_export_adaptor.hpp boost_adaptbx/graph/graph_type.hpp boost_adaptbx/graph/maximum_clique_greedy.hpp boost_adaptbx/graph/maximum_clique_rascal.hpp boost_adaptbx/graph/vertex_map.hpp boost_adaptbx/tests/ boost_adaptbx/tests/tst_optional_copy.h sent 73,881 bytes received 386 bytes 148,534.00 bytes/sec total size is 72,301 speedup is 0.97 building file list ... done cbflib_adaptbx/ cbflib_adaptbx/detectors/ cbflib_adaptbx/detectors/basic.h cbflib_adaptbx/detectors/buffer_based_service.h cbflib_adaptbx/detectors/cbf_adaptor.h cbflib_adaptbx/detectors/cbf_byte_offset_optimized.h cbflib_adaptbx/detectors/mar_adaptor.h cbflib_adaptbx/detectors/boost_python/ cbflib_adaptbx/detectors/boost_python/cbf_binary_adaptor.h cbflib_adaptbx/detectors/boost_python/general_cbf_write.h sent 22,304 bytes received 158 bytes 44,924.00 bytes/sec total size is 21,627 speedup is 0.96 building file list ... done ccp4io_adaptbx/ ccp4io_adaptbx/ccp4_ccplib_fem.hpp ccp4io_adaptbx/ccp4_diskio_fem.hpp ccp4io_adaptbx/ccp4_fftlib_fem.hpp ccp4io_adaptbx/ccp4_library_fem.hpp ccp4io_adaptbx/ccp4_maplib_fem.hpp ccp4io_adaptbx/ccp4_mtzlib_fem.hpp ccp4io_adaptbx/ccp4_other_fem.hpp ccp4io_adaptbx/ccp4_parser_f.h ccp4io_adaptbx/ccp4_parser_fem.hpp ccp4io_adaptbx/ccp4_symlib_fem.hpp ccp4io_adaptbx/cmaplib_f.h ccp4io_adaptbx/cmtzlib_f.h ccp4io_adaptbx/csymlib_f.h ccp4io_adaptbx/library_f.h ccp4io_adaptbx/printf_wrappers.h ccp4io_adaptbx/dev/ ccp4io_adaptbx/dev/fftlib.hpp sent 87,955 bytes received 326 bytes 176,562.00 bytes/sec total size is 86,686 speedup is 0.98 building file list ... done cctbx/ cctbx/adptbx.h cctbx/anharmonic.h cctbx/coordinates.h cctbx/crystal_orientation.h cctbx/cumulative_intensity_distribution.h cctbx/error.h cctbx/french_wilson.h cctbx/hendrickson_lattman.h cctbx/import_scitbx_af.h cctbx/miller.h cctbx/restraints.h cctbx/tagged_value.h cctbx/uctbx.h cctbx/adp_restraints/ cctbx/adp_restraints/adp_restraints.h cctbx/adp_restraints/adp_similarity.h cctbx/adp_restraints/aniso_restraints.h cctbx/adp_restraints/fixed_u_eq_adp.h cctbx/adp_restraints/isotropic_adp.h cctbx/adp_restraints/rigid_bond.h cctbx/adp_restraints/rigu.h cctbx/adptbx/ cctbx/adptbx/hirshfeld.h cctbx/covariance/ cctbx/covariance/covariance.h cctbx/crystal/ cctbx/crystal/asu_clusters.h cctbx/crystal/close_packing.h cctbx/crystal/coordination_sequences.h cctbx/crystal/direct_space_asu.h cctbx/crystal/incremental_pairs.h cctbx/crystal/namespace.h cctbx/crystal/neighbors_fast.h cctbx/crystal/neighbors_simple.h cctbx/crystal/pair_tables.h cctbx/crystal/site_cluster_analysis.h cctbx/crystal/symmetry.h cctbx/crystal/workarounds_bpl.h cctbx/dmtbx/ cctbx/dmtbx/triplet_generator.h cctbx/dmtbx/triplet_phase_relation.h cctbx/eltbx/ cctbx/eltbx/attenuation_coefficient.h cctbx/eltbx/basic.h cctbx/eltbx/chemical_elements.h cctbx/eltbx/covalent_radii.h cctbx/eltbx/electron_scattering.h cctbx/eltbx/fp_fdp.h cctbx/eltbx/henke.h cctbx/eltbx/icsd_radii.h cctbx/eltbx/neutron.h cctbx/eltbx/sasaki.h cctbx/eltbx/tiny_pse.h cctbx/eltbx/wavelengths.h cctbx/eltbx/xray_scattering.h cctbx/eltbx/xray_scattering/ cctbx/eltbx/xray_scattering/form_factor.h cctbx/eltbx/xray_scattering/gaussian.h cctbx/eltbx/xray_scattering/n_gaussian.h cctbx/eltbx/xray_scattering/n_gaussian_raw.h cctbx/examples/ cctbx/examples/merging/ cctbx/examples/merging/postrefine_base.h cctbx/examples/merging/xscale_prototype_core.h cctbx/geometry/ cctbx/geometry/geometry.h cctbx/geometry_restraints/ cctbx/geometry_restraints/angle.h cctbx/geometry_restraints/asu_cache.h cctbx/geometry_restraints/bond.h cctbx/geometry_restraints/bond_misc.h cctbx/geometry_restraints/bond_similarity.h cctbx/geometry_restraints/bond_sorted.h cctbx/geometry_restraints/chirality.h cctbx/geometry_restraints/dihedral.h cctbx/geometry_restraints/motif.h cctbx/geometry_restraints/namespace.h cctbx/geometry_restraints/nonbonded.h cctbx/geometry_restraints/nonbonded_sorted.h cctbx/geometry_restraints/parallelity.h cctbx/geometry_restraints/planarity.h cctbx/geometry_restraints/proxy_select.h cctbx/geometry_restraints/shared_wrapper_pickle.hpp cctbx/geometry_restraints/sorted_asu_proxies.h cctbx/geometry_restraints/utils.h cctbx/maptbx/ cctbx/maptbx/asymmetric_map.h cctbx/maptbx/average_densities.h cctbx/maptbx/connectivity.h cctbx/maptbx/coordinate_transformers.h cctbx/maptbx/copy.h cctbx/maptbx/fft.h cctbx/maptbx/fsc.h cctbx/maptbx/ft_analytical_1d_point_scatterer_at_origin.h cctbx/maptbx/grid_indices_around_sites.h cctbx/maptbx/grid_tags.h cctbx/maptbx/gridding.h cctbx/maptbx/histogram.h cctbx/maptbx/interpolation.h cctbx/maptbx/loft.h cctbx/maptbx/map_accumulator.h cctbx/maptbx/marked_grid_points.h cctbx/maptbx/mask.h cctbx/maptbx/mask_utils.h cctbx/maptbx/namespace.h cctbx/maptbx/peak_search.h cctbx/maptbx/resolution.h cctbx/maptbx/skeletons.h cctbx/maptbx/sphericity.h cctbx/maptbx/standard_deviations_around_sites.hpp cctbx/maptbx/statistics.h cctbx/maptbx/structure_factors.h cctbx/maptbx/target_and_gradients.h cctbx/maptbx/utils.h cctbx/maptbx/accessors/ cctbx/maptbx/accessors/c_grid_p1.h cctbx/maptbx/accessors/c_grid_padded_p1.h cctbx/maptbx/bcr/ cctbx/maptbx/bcr/bcr.h cctbx/maptbx/bcr/vrm.h cctbx/masks/ cctbx/masks/around_atoms.h cctbx/masks/flood_fill.h cctbx/math/ cctbx/math/array_utils.h cctbx/math/cos_sin_table.h cctbx/math/loop_n_from_m.h cctbx/math/mod.h cctbx/miller/ cctbx/miller/amplitude_normalisation.h cctbx/miller/asu.h cctbx/miller/bins.h cctbx/miller/change_basis.h cctbx/miller/expand_to_p1.h cctbx/miller/f_calc_map.h cctbx/miller/index_generator.h cctbx/miller/index_span.h cctbx/miller/lookup_utils.h cctbx/miller/match.h cctbx/miller/match_bijvoet_mates.h cctbx/miller/match_indices.h cctbx/miller/match_multi_indices.h cctbx/miller/math.h cctbx/miller/merge_equivalents.h cctbx/miller/phase_integrator.h cctbx/miller/phase_transfer.h cctbx/miller/randomize_amplitude_and_phase.h cctbx/miller/slices.h cctbx/miller/sym_equiv.h cctbx/miller/union_of_indices.h cctbx/multipolar/ cctbx/multipolar/aspherical.h cctbx/sgtbx/ cctbx/sgtbx/basic.h cctbx/sgtbx/brick.h cctbx/sgtbx/change_of_basis_op.h cctbx/sgtbx/find_affine.h cctbx/sgtbx/group_codes.h cctbx/sgtbx/lattice_symmetry.h cctbx/sgtbx/lattice_tr.h cctbx/sgtbx/miller_ops.h cctbx/sgtbx/operator_from_axis_direction.h cctbx/sgtbx/parse_string.h cctbx/sgtbx/phase_info.h cctbx/sgtbx/reciprocal_space_asu.h cctbx/sgtbx/reciprocal_space_reference_asu.h cctbx/sgtbx/reference_settings.h cctbx/sgtbx/rot_mx.h cctbx/sgtbx/rot_mx_hash.h cctbx/sgtbx/rot_mx_info.h cctbx/sgtbx/rotation_matrices.h cctbx/sgtbx/row_echelon_solve.h cctbx/sgtbx/rt_mx.h cctbx/sgtbx/rt_mx_hash.h cctbx/sgtbx/search_symmetry.h cctbx/sgtbx/select_generators.h cctbx/sgtbx/seminvariant.h cctbx/sgtbx/site_constraints.h cctbx/sgtbx/site_symmetry.h cctbx/sgtbx/site_symmetry_table.h cctbx/sgtbx/smith_normal_form.h cctbx/sgtbx/space_group.h cctbx/sgtbx/space_group_hash.h cctbx/sgtbx/space_group_type.h cctbx/sgtbx/sym_equiv_sites.h cctbx/sgtbx/symbols.h cctbx/sgtbx/sys_abs_equiv.h cctbx/sgtbx/tensor_rank_2.h cctbx/sgtbx/tensors.h cctbx/sgtbx/tr_group.h cctbx/sgtbx/tr_group_hash.h cctbx/sgtbx/tr_vec.h cctbx/sgtbx/tr_vec_hash.h cctbx/sgtbx/utils.h cctbx/sgtbx/wyckoff.h cctbx/sgtbx/direct_space_asu/ cctbx/sgtbx/direct_space_asu/proto/ cctbx/sgtbx/direct_space_asu/proto/asymmetric_unit.h cctbx/sgtbx/direct_space_asu/proto/cut.h cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.h cctbx/sgtbx/direct_space_asu/proto/expressions.h cctbx/sgtbx/direct_space_asu/proto/facet_collection.h cctbx/sgtbx/direct_space_asu/proto/reference_table.h cctbx/sgtbx/direct_space_asu/proto/shortcuts.h cctbx/sgtbx/direct_space_asu/proto/small_vec_math.h cctbx/symmetry_search/ cctbx/symmetry_search/translation_refinement.h cctbx/translation_search/ cctbx/translation_search/fast_nv1995.h cctbx/translation_search/fast_terms.h cctbx/translation_search/namespace.h cctbx/translation_search/symmetry_flags.h cctbx/translation_search/fast_nv1995/ cctbx/translation_search/fast_nv1995/combinations.h cctbx/translation_search/fast_nv1995/intermediates.h cctbx/translation_search/fast_nv1995/summations.h cctbx/uctbx/ cctbx/uctbx/fast_minimum_reduction.h cctbx/uctbx/niggli_reduction.h cctbx/uctbx/determine_unit_cell/ cctbx/uctbx/determine_unit_cell/NCDist.h cctbx/xray/ cctbx/xray/conversions.h cctbx/xray/curvatures_simple.h cctbx/xray/each_hkl_gradients_direct.h cctbx/xray/extinction.h cctbx/xray/f_model.h cctbx/xray/fast_gradients.h cctbx/xray/gradient_flags.h cctbx/xray/gradients_direct.h cctbx/xray/grouped_data.h cctbx/xray/hr_ht_cache.h cctbx/xray/minimization.h cctbx/xray/observations.h cctbx/xray/packing_order.h cctbx/xray/parameter_map.h cctbx/xray/sampled_model_density.h cctbx/xray/sampling_base.h cctbx/xray/sampling_loop.h cctbx/xray/scatterer.h cctbx/xray/scatterer_flags.h cctbx/xray/scatterer_utils.h cctbx/xray/scattering_type_registry.h cctbx/xray/sigmaa.h cctbx/xray/structure_factors_direct.h cctbx/xray/structure_factors_simple.h cctbx/xray/targets.h cctbx/xray/twin_component.h cctbx/xray/twin_targets.h cctbx/xray/targets/ cctbx/xray/targets/common_results.h cctbx/xray/targets/correlation.h cctbx/xray/targets/least_squares.h cctbx/xray/targets/mlf.h cctbx/xray/targets/mlhl.h cctbx/xray/targets/mli.h cctbx/xray/targets/shelxl_wght_ls.hpp sent 1,947,437 bytes received 4,458 bytes 3,903,790.00 bytes/sec total size is 1,930,152 speedup is 0.99 building file list ... done cma_es/ cma_es/cma/ cma_es/cma/cmaes.h cma_es/cma/cmaes_interface.h sent 6,886 bytes received 60 bytes 13,892.00 bytes/sec total size is 6,671 speedup is 0.96 building file list ... done sent 190 bytes received 12 bytes 404.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done dxtbx/ dxtbx/error.h dxtbx/imageset.h dxtbx/array_family/ dxtbx/array_family/flex_table.h dxtbx/array_family/flex_table_suite.h dxtbx/array_family/ref_pickle_double_buffered.h dxtbx/boost_python/ dxtbx/boost_python/compression.h dxtbx/format/ dxtbx/format/image.h dxtbx/format/boost_python/ dxtbx/format/boost_python/cbf_read_buffer.h dxtbx/masking/ dxtbx/masking/goniometer_shadow_masking.h dxtbx/masking/masking.h dxtbx/model/ dxtbx/model/beam.h dxtbx/model/crystal.h dxtbx/model/detector.h dxtbx/model/experiment.h dxtbx/model/experiment_list.h dxtbx/model/goniometer.h dxtbx/model/history.h dxtbx/model/kappa_goniometer.h dxtbx/model/model_helpers.h dxtbx/model/multi_axis_goniometer.h dxtbx/model/panel.h dxtbx/model/panel_data.h dxtbx/model/parallax_correction.h dxtbx/model/pixel_to_millimeter.h dxtbx/model/ray_intersection.h dxtbx/model/scan.h dxtbx/model/scan_helpers.h dxtbx/model/spectrum.h dxtbx/model/virtual_panel.h dxtbx/model/boost_python/ dxtbx/model/boost_python/pickle_suite.h dxtbx/model/boost_python/to_from_dict.h sent 402,295 bytes received 629 bytes 805,848.00 bytes/sec total size is 399,803 speedup is 0.99 building file list ... done ./ fem.hpp noexcept_false.hpp fem/ fem/arr.hpp fem/arr_and_str_indices.hpp fem/arr_ref.hpp fem/arr_size.hpp fem/close_chain.hpp fem/common.hpp fem/data.hpp fem/data_of_type.hpp fem/data_type_star.hpp fem/dimension.hpp fem/do.hpp fem/error_utils.hpp fem/file_positioning_chain.hpp fem/format.hpp fem/inquire_chain.hpp fem/intrinsics.hpp fem/intrinsics_extra.hpp fem/io.hpp fem/io_exceptions.hpp fem/main.hpp fem/major_types.hpp fem/open_chain.hpp fem/read.hpp fem/size_t.hpp fem/star.hpp fem/stop.hpp fem/str.hpp fem/str_arr_ref.hpp fem/str_ref.hpp fem/variant.hpp fem/write.hpp fem/zero.hpp fem/utils/ fem/utils/char.hpp fem/utils/double_to_string.hpp fem/utils/equivalence.hpp fem/utils/int_types.hpp fem/utils/misc.hpp fem/utils/path.hpp fem/utils/random.hpp fem/utils/real_as_string.hpp fem/utils/simple_streams.hpp fem/utils/string.hpp fem/utils/string_to_double.hpp fem/utils/string_to_double_fmt.hpp fem/utils/token.hpp sent 204,794 bytes received 918 bytes 411,424.00 bytes/sec total size is 201,540 speedup is 0.98 building file list ... done gltbx/ gltbx/error.h gltbx/error_utils.h gltbx/fonts_ucs.h gltbx/glext.h gltbx/include_opengl.h gltbx/pointer_args_bpl.h gltbx/quadrics.h gltbx/special_wrapper_support.h gltbx/util.h sent 598,791 bytes received 190 bytes 1,197,962.00 bytes/sec total size is 597,954 speedup is 1.00 building file list ... done iotbx/ iotbx/error.h iotbx/detectors/ iotbx/detectors/bruker.h iotbx/detectors/display.h iotbx/detectors/image_divider.h iotbx/detectors/scanbox.h iotbx/detectors/context/ iotbx/detectors/context/spot_xy_convention.h iotbx/dsn6/ iotbx/dsn6/dsn6.hpp iotbx/mtz/ iotbx/mtz/batch.h iotbx/mtz/column.h iotbx/mtz/crystal.h iotbx/mtz/dataset.h iotbx/mtz/object.h iotbx/pdb/ iotbx/pdb/common_residue_names.h iotbx/pdb/hierarchy.h iotbx/pdb/hierarchy_atoms.h iotbx/pdb/hierarchy_bpl.h iotbx/pdb/hybrid_36_c.h iotbx/pdb/hybrid_36_cpp.h iotbx/pdb/input.h iotbx/pdb/modified_aa_names.h iotbx/pdb/modified_rna_dna_names.h iotbx/pdb/namespace.h iotbx/pdb/rna_dna_atom_names.h iotbx/pdb/small_str.h iotbx/pdb/utils.h iotbx/pdb/write_utils.h iotbx/pdb/write_utils_bpl.h iotbx/pdb/xray_structure.h iotbx/shelx/ iotbx/shelx/hklf.h iotbx/xplor/ iotbx/xplor/map_reader.h iotbx/xplor/map_writer.h sent 273,610 bytes received 629 bytes 548,478.00 bytes/sec total size is 270,737 speedup is 0.99 building file list ... done sent 1,574 bytes received 12 bytes 3,172.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done mmtbx/ mmtbx/error.h mmtbx/import_scitbx_af.h mmtbx/alignment/ mmtbx/alignment/align.h mmtbx/alignment/alignment.h mmtbx/alignment/tables.h mmtbx/building/ mmtbx/building/loop_closure/ mmtbx/building/loop_closure/ccd.h mmtbx/bulk_solvent/ mmtbx/bulk_solvent/bulk_solvent.h mmtbx/bulk_solvent/mosaic.h mmtbx/den/ mmtbx/den/den.h mmtbx/dynamics/ mmtbx/dynamics/dynamics.h mmtbx/f_model/ mmtbx/f_model/f_model.h mmtbx/geometry/ mmtbx/geometry/asa.hpp mmtbx/geometry/calculator.hpp mmtbx/geometry/clash.hpp mmtbx/geometry/containment.hpp mmtbx/geometry/flattening.hpp mmtbx/geometry/indexing.hpp mmtbx/geometry/overlap.hpp mmtbx/geometry/primitive.hpp mmtbx/geometry/sphere_surface_sampling.hpp mmtbx/geometry/boost_python/ mmtbx/geometry/boost_python/containment.hpp mmtbx/geometry/boost_python/indexing.hpp mmtbx/geometry_restraints/ mmtbx/geometry_restraints/ramachandran.h mmtbx/geometry_restraints/reference_coordinate.h mmtbx/hydrogens/ mmtbx/hydrogens/hydrogens.h mmtbx/masks/ mmtbx/masks/atom_mask.h mmtbx/masks/grid_symop.h mmtbx/masks/util.h mmtbx/max_lik/ mmtbx/max_lik/max_lik.h mmtbx/max_lik/solvent_distribution_nco_09may2005.h mmtbx/max_lik/solvent_distribution_nco_09may2005_short.h mmtbx/max_lik/solvent_distribution_nco_09may2005_short_uniform.h mmtbx/max_lik/solvent_distribution_nco_14mar2005.h mmtbx/max_lik/solvent_distribution_nco_14mar2005_mod.h mmtbx/max_lik/solvent_distribution_nco_14mar2005_short.h mmtbx/max_lik/wat_dist_r_0_1.h mmtbx/max_lik/wat_dist_r_2p0_2p5.h mmtbx/ncs/ mmtbx/ncs/cartesian_restraints.h mmtbx/ncs/tncs.h mmtbx/pair_interaction/ mmtbx/pair_interaction/interaction.h mmtbx/probe/ mmtbx/probe/Common.h mmtbx/probe/DotSpheres.h mmtbx/probe/Scoring.h mmtbx/probe/SpatialQuery.h mmtbx/reduce/ mmtbx/reduce/InteractionGraph.h mmtbx/reduce/Optimizers.h mmtbx/reduce/PositionReturn.h mmtbx/rotamer/ mmtbx/rotamer/fit.h mmtbx/rsr/ mmtbx/rsr/rsr.h mmtbx/scaling/ mmtbx/scaling/absolute_scaling.h mmtbx/scaling/outlier.h mmtbx/scaling/relative_scaling.h mmtbx/scaling/scaling.h mmtbx/scaling/twinning.h mmtbx/secondary_structure/ mmtbx/secondary_structure/dssp.hpp mmtbx/secondary_structure/identify.hpp mmtbx/tls/ mmtbx/tls/decompose.h mmtbx/tls/optimise_amplitudes.h mmtbx/tls/tls.h mmtbx/tls/utils.h mmtbx/utils/ mmtbx/utils/utils.h mmtbx/validation/ mmtbx/validation/ramachandran/ mmtbx/validation/ramachandran/rama8000_tables.h mmtbx/validation/ramachandran/rama_eval.h sent 2,054,905 bytes received 1,291 bytes 4,112,392.00 bytes/sec total size is 2,048,540 speedup is 1.00 building file list ... done omptbx/ omptbx/lock.h omptbx/omp_or_stubs.h omptbx/stubs.h sent 2,109 bytes received 76 bytes 4,370.00 bytes/sec total size is 1,850 speedup is 0.85 building file list ... done rstbx/ rstbx/backplane.h rstbx/import_scitbx_af.hpp rstbx/apps/ rstbx/apps/stills/ rstbx/apps/stills/simple_integration.h rstbx/bandpass/ rstbx/bandpass/parameters.h rstbx/bandpass/subpixel_joint_model.h rstbx/bpcx/ rstbx/bpcx/detector_model/ rstbx/bpcx/detector_model/sensor.h rstbx/diffraction/ rstbx/diffraction/ewald_sphere.h rstbx/diffraction/partial_spot_position_partial_H.h rstbx/diffraction/reflection_range.h rstbx/diffraction/fastbragg/ rstbx/diffraction/fastbragg/fastbragg.h rstbx/dps_core/ rstbx/dps_core/direction.h rstbx/dps_core/directional_fft.h rstbx/dps_core/dps_core.h rstbx/dps_core/spotclass.h rstbx/indexing_api/ rstbx/indexing_api/indexing_api.h rstbx/simage/ rstbx/simage/image_simple.hpp rstbx/simulation/ rstbx/simulation/sim_xfel1.h rstbx/symmetry/ rstbx/symmetry/constraints/ rstbx/symmetry/constraints/a_g_conversion.h sent 111,354 bytes received 400 bytes 223,508.00 bytes/sec total size is 109,476 speedup is 0.98 building file list ... done scitbx/ scitbx/auto_array.h scitbx/constants.h scitbx/cubicle_neighbors.hpp scitbx/cubicles.h scitbx/error.h scitbx/error_utils.h scitbx/histogram.h scitbx/indexed_value.h scitbx/iso_surface.h scitbx/lbfgs.h scitbx/lbfgsb.h scitbx/mat2.h scitbx/mat3.h scitbx/numerical.h scitbx/r3_utils.hpp scitbx/random.h scitbx/random_legacy_boost_1_63.h scitbx/rational.h scitbx/rotr3.h scitbx/sym_mat2.h scitbx/sym_mat3.h scitbx/type_holder.h scitbx/vec2.h scitbx/vec3.h scitbx/weighted_histogram.h scitbx/array_family/ scitbx/array_family/array_adaptor.h scitbx/array_family/block_iterator.h scitbx/array_family/counts.h scitbx/array_family/error.h scitbx/array_family/flex_types.h scitbx/array_family/initialiser.h scitbx/array_family/linear_interpolation.h scitbx/array_family/loops.h scitbx/array_family/memory.h scitbx/array_family/misc_functions.h scitbx/array_family/owning_ref.h scitbx/array_family/range.h scitbx/array_family/ref.h scitbx/array_family/ref_matrix.h scitbx/array_family/ref_reductions.h scitbx/array_family/selections.h scitbx/array_family/shared.h scitbx/array_family/shared_plain.h scitbx/array_family/simple_io.h scitbx/array_family/simple_tiny_io.h scitbx/array_family/slice.h scitbx/array_family/small.h scitbx/array_family/small_plain.h scitbx/array_family/sort.h scitbx/array_family/tiny.h scitbx/array_family/tiny_mat_ref.h scitbx/array_family/tiny_plain.h scitbx/array_family/tiny_types.h scitbx/array_family/type_traits.h scitbx/array_family/versa.h scitbx/array_family/versa_matrix.h scitbx/array_family/versa_plain.h scitbx/array_family/accessors/ scitbx/array_family/accessors/c_grid.h scitbx/array_family/accessors/c_grid_padded.h scitbx/array_family/accessors/c_grid_padded_periodic.h scitbx/array_family/accessors/c_grid_periodic.h scitbx/array_family/accessors/c_index_1d_calculator.h scitbx/array_family/accessors/c_interval_grid.h scitbx/array_family/accessors/f_grid.h scitbx/array_family/accessors/flex_grid.h scitbx/array_family/accessors/mat_grid.h scitbx/array_family/accessors/packed_matrix.h scitbx/array_family/accessors/rectangular_full_packed.h scitbx/array_family/accessors/row_and_column.h scitbx/array_family/accessors/striding.h scitbx/array_family/accessors/traits.h scitbx/array_family/accessors/trivial.h scitbx/array_family/boost_python/ scitbx/array_family/boost_python/byte_str.h scitbx/array_family/boost_python/c_grid_flex_conversions.h scitbx/array_family/boost_python/flex_helpers.h scitbx/array_family/boost_python/flex_pickle_double_buffered.h scitbx/array_family/boost_python/flex_pickle_single_buffered.h scitbx/array_family/boost_python/flex_wrapper.h scitbx/array_family/boost_python/flex_wrapper_complex.h scitbx/array_family/boost_python/numpy_bridge.hpp scitbx/array_family/boost_python/owning_ref_conversions.h scitbx/array_family/boost_python/packed_to_flex_conversions.h scitbx/array_family/boost_python/passing_flex_by_reference.h scitbx/array_family/boost_python/range_wrappers.h scitbx/array_family/boost_python/ref_flex_conversions.h scitbx/array_family/boost_python/ref_from_array.h scitbx/array_family/boost_python/ref_pickle_double_buffered.h scitbx/array_family/boost_python/selections_wrapper.h scitbx/array_family/boost_python/shared_flat_conversions.h scitbx/array_family/boost_python/shared_flex_conversions.h scitbx/array_family/boost_python/shared_wrapper.h scitbx/array_family/boost_python/utils.h scitbx/array_family/detail/ scitbx/array_family/detail/auto_allocator.h scitbx/array_family/detail/generic_array_functors.h scitbx/array_family/detail/generic_array_operators.h scitbx/array_family/detail/misc.h scitbx/array_family/detail/push_back_etc.h scitbx/array_family/detail/reducing_boolean_mem_fun.h scitbx/array_family/detail/ref_helpers.h scitbx/array_family/detail/tiny_helpers.h scitbx/boost_python/ scitbx/boost_python/array_as_list.h scitbx/boost_python/container_conversions.h scitbx/boost_python/cstringio_utils.h scitbx/boost_python/is_polymorphic_workaround.h scitbx/boost_python/iterator_range.hpp scitbx/boost_python/iterator_wrappers.h scitbx/boost_python/pair_as_tuple.hpp scitbx/boost_python/sequence_as_array.h scitbx/boost_python/slice.h scitbx/boost_python/stl_map_as_dict.h scitbx/boost_python/utils.h scitbx/examples/ scitbx/examples/bevington/ scitbx/examples/bevington/prototype_core.h scitbx/fftpack/ scitbx/fftpack/complex_to_complex.h scitbx/fftpack/complex_to_complex_2d.h scitbx/fftpack/complex_to_complex_3d.h scitbx/fftpack/factorization.h scitbx/fftpack/gridding.h scitbx/fftpack/real_to_complex.h scitbx/fftpack/real_to_complex_3d.h scitbx/fftpack/detail/ scitbx/fftpack/detail/real_to_complex_backward.h scitbx/fftpack/detail/real_to_complex_forward.h scitbx/fftpack/detail/ref.h scitbx/glmtbx/ scitbx/glmtbx/family.h scitbx/glmtbx/glm.h scitbx/glmtbx/robust_glm.h scitbx/graphics_utils/ scitbx/graphics_utils/colors.h scitbx/lbfgs/ scitbx/lbfgs/drop_convergence_test.h scitbx/lbfgs/raw.h scitbx/lbfgs/raw_reference.h scitbx/lbfgsb/ scitbx/lbfgsb/fortran_interface.h scitbx/lbfgsb/raw.h scitbx/line_search/ scitbx/line_search/more_thuente_1994.h scitbx/line_search/more_thuente_1994_raw.h scitbx/lstbx/ scitbx/lstbx/normal_equations.h scitbx/math/ scitbx/math/2d_zernike_moments.h scitbx/math/accumulators.h scitbx/math/angle_derivative.h scitbx/math/approx_equal.h scitbx/math/atanh.h scitbx/math/basic_statistics.h scitbx/math/bessel.h scitbx/math/cartesian_product_fixed_size.hpp scitbx/math/chebyshev.h scitbx/math/compile_time.h scitbx/math/continued_fraction.h scitbx/math/copysign.h scitbx/math/cubic_equation.h scitbx/math/dihedral.h scitbx/math/distance_difference.h scitbx/math/distributions.h scitbx/math/eigensystem.h scitbx/math/erf.h scitbx/math/euler_angles.h scitbx/math/fast_approx_math.h scitbx/math/floating_point_epsilon.h scitbx/math/g_function.h scitbx/math/gamma.h scitbx/math/gaussian_fit_1d_analytical.h scitbx/math/gcd.h scitbx/math/golay.h scitbx/math/halton.h scitbx/math/icosahedron.h scitbx/math/imaginary.h scitbx/math/inertia_tensor.h scitbx/math/interpolation.h scitbx/math/jacks_expf.h scitbx/math/lambertw.h scitbx/math/least_squares_plane.h scitbx/math/linear_correlation.h scitbx/math/linear_interpolation.h scitbx/math/linear_regression.h scitbx/math/mean_and_variance.h scitbx/math/minimum_covering_sphere.h scitbx/math/modulo.h scitbx/math/namespace.h scitbx/math/numeric_limits.h scitbx/math/orthonormal_basis.h scitbx/math/parabolic_cylinder_d.h scitbx/math/phase_error.h scitbx/math/polygon_intersection.h scitbx/math/principal_axes_of_inertia.h scitbx/math/quadrature.h scitbx/math/r3_rotation.h scitbx/math/resample.h scitbx/math/rotate_around_axis.h scitbx/math/rotation.h scitbx/math/superpose.h scitbx/math/tetrahedron.h scitbx/math/traits.h scitbx/math/unimodular_generator.h scitbx/math/utils.h scitbx/math/weighted_covariance.h scitbx/math/zernike.h scitbx/math/zernike_moments.h scitbx/math/erf/ scitbx/math/erf/constants.h scitbx/math/erf/engine.h scitbx/math/gaussian/ scitbx/math/gaussian/fit.h scitbx/math/gaussian/namespace.h scitbx/math/gaussian/sum.h scitbx/math/gaussian/term.h scitbx/matrix/ scitbx/matrix/as_xyz.h scitbx/matrix/cholesky.h scitbx/matrix/delta_tensors.h scitbx/matrix/diagonal.h scitbx/matrix/eigensystem.h scitbx/matrix/givens.h scitbx/matrix/householder.h scitbx/matrix/inversion.h scitbx/matrix/lu_decomposition.h scitbx/matrix/matrix_vector_operations.h scitbx/matrix/move.h scitbx/matrix/multiply.h scitbx/matrix/norms.h scitbx/matrix/outer_product.h scitbx/matrix/packed.h scitbx/matrix/row_echelon.h scitbx/matrix/row_echelon_full_pivoting.h scitbx/matrix/row_echelon_full_pivoting_impl.h scitbx/matrix/row_echelon_full_pivoting_small.h scitbx/matrix/special_matrices.h scitbx/matrix/svd.h scitbx/matrix/symmetric_rank_1_update.h scitbx/matrix/tensor_rank_2.h scitbx/matrix/tensors.h scitbx/matrix/tests.h scitbx/matrix/transpose_multiply.h scitbx/matrix/triangular_systems.h scitbx/matrix/vector_operations.h scitbx/matrix/tests/ scitbx/matrix/tests/utils.h scitbx/minpack/ scitbx/minpack/levenberg_marquardt.h scitbx/minpack/raw.h scitbx/misc/ scitbx/misc/file_utils.h scitbx/misc/positive_getitem_index.h scitbx/misc/split_lines.h scitbx/random/ scitbx/random/mersenne_twister.h scitbx/random/variate_generator.h scitbx/random/boost_python/ scitbx/random/boost_python/random.h scitbx/rigid_body/ scitbx/rigid_body/array_packing.h scitbx/rigid_body/body_lib.h scitbx/rigid_body/body_t.h scitbx/rigid_body/featherstone.h scitbx/rigid_body/joint_lib.h scitbx/rigid_body/joint_t.h scitbx/rigid_body/matrix_helpers.h scitbx/rigid_body/namespace.h scitbx/rigid_body/spatial_lib.h scitbx/rigid_body/tardy.h scitbx/serialization/ scitbx/serialization/base_256.h scitbx/serialization/double_buffered.h scitbx/serialization/single_buffered.h scitbx/slatec/ scitbx/slatec/lib_c.h scitbx/slatec/lib_cpp.h scitbx/sparse/ scitbx/sparse/approx_equal.h scitbx/sparse/dfs.h scitbx/sparse/io.h scitbx/sparse/lu_factorization.h scitbx/sparse/matrix.h scitbx/sparse/operators.h scitbx/sparse/random.h scitbx/sparse/triangular.h scitbx/sparse/util.h scitbx/sparse/vector.h scitbx/sparse/boost_python/ scitbx/sparse/boost_python/vector.h scitbx/stl/ scitbx/stl/map_as_python_dict.h scitbx/stl/map_fwd.h scitbx/stl/map_wrapper.h scitbx/stl/set_wrapper.h scitbx/stl/vector_as_python_list.h scitbx/stl/vector_io.h scitbx/stl/vector_wrapper.h scitbx/suffixtree/ scitbx/suffixtree/builder.hpp scitbx/suffixtree/edge.hpp scitbx/suffixtree/exception.hpp scitbx/suffixtree/glyph.hpp scitbx/suffixtree/iterator.hpp scitbx/suffixtree/matching_statistics.hpp scitbx/suffixtree/tree.hpp scitbx/suffixtree/word.hpp scitbx/suffixtree/boost_python/ scitbx/suffixtree/boost_python/edge_exports.hpp scitbx/suffixtree/boost_python/iterator_wrapper.hpp scitbx/suffixtree/boost_python/object_extensions.hpp scitbx/suffixtree/boost_python/tree_exports.hpp scitbx/util/ scitbx/util/cpu_timer.h scitbx/wigner/ scitbx/wigner/wigner3j.h sent 1,906,898 bytes received 5,521 bytes 3,824,838.00 bytes/sec total size is 1,886,651 speedup is 0.99 building file list ... done sent 154 bytes received 12 bytes 332.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done smtbx/ smtbx/error.h smtbx/import_cctbx.h smtbx/import_scitbx_af.h smtbx/ab_initio/ smtbx/ab_initio/density_modification.h smtbx/refinement/ smtbx/refinement/import_cctbx_xray.h smtbx/refinement/least_squares.h smtbx/refinement/weighting_schemes.h smtbx/refinement/constraints/ smtbx/refinement/constraints/affine.h smtbx/refinement/constraints/direction.h smtbx/refinement/constraints/geometrical_hydrogens.h smtbx/refinement/constraints/occupancy.h smtbx/refinement/constraints/proxy.h smtbx/refinement/constraints/reparametrisation.h smtbx/refinement/constraints/rigid.h smtbx/refinement/constraints/same_group.h smtbx/refinement/constraints/scaled_adp.h smtbx/refinement/constraints/scatterer_parameters.h smtbx/refinement/constraints/shared.h smtbx/refinement/constraints/special_position.h smtbx/refinement/constraints/symmetry_equivalent.h smtbx/refinement/constraints/u_eq_dependent_u_iso.h smtbx/refinement/constraints/u_iso_dependent_u_iso.h smtbx/refinement/restraints/ smtbx/refinement/restraints/origin_fixing.h smtbx/structure_factors/ smtbx/structure_factors/direct/ smtbx/structure_factors/direct/standard_xray.h smtbx/structure_factors/direct/table_based.h sent 182,161 bytes received 512 bytes 365,346.00 bytes/sec total size is 179,686 speedup is 0.98 building file list ... done spotfinder/ spotfinder/applications/ spotfinder/applications/find_active_area.h spotfinder/core_toolbox/ spotfinder/core_toolbox/distl.h spotfinder/core_toolbox/hough.h spotfinder/core_toolbox/libdistl.h spotfinder/core_toolbox/spot_shapes.h spotfinder/core_toolbox/spot_types.h spotfinder/core_toolbox/spotfilter.h spotfinder/core_toolbox/boost_python/ spotfinder/core_toolbox/boost_python/singlemask.h spotfinder/dxtbx_toolbox/ spotfinder/dxtbx_toolbox/distl.h spotfinder/dxtbx_toolbox/libdistl.h sent 42,951 bytes received 221 bytes 86,344.00 bytes/sec total size is 41,966 speedup is 0.97 building file list ... done tbxx/ tbxx/alignment.h tbxx/error_utils.hpp tbxx/libc_backtrace.hpp tbxx/optional_copy.hpp tbxx/pretty_type_name.hpp tbxx/time_accu.hpp sent 12,022 bytes received 133 bytes 24,310.00 bytes/sec total size is 11,532 speedup is 0.95 building file list ... done sent 151 bytes received 12 bytes 326.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done xcif/ xcif/include/ xcif/include/xcif/ xcif/include/xcif/data_model.h xcif/include/xcif/mapped_file.h xcif/include/xcif/numeric.h xcif/include/xcif/string_view.h xcif/include/xcif/tokenizer.h xcif/regression/ xcif/regression/cpp/ xcif/regression/cpp/test_utils.h sent 24,012 bytes received 145 bytes 48,314.00 bytes/sec total size is 23,452 speedup is 0.97 building file list ... done ./ boost_adaptbx/ boost_adaptbx/type_id_eq.h cctbx/boost_python/ cctbx/boost_python/flex_fwd.h scitbx/ scitbx/lbfgs_fem.hpp scitbx/array_family/ scitbx/array_family/operator_traits_builtin.h scitbx/array_family/ref_algebra.h scitbx/array_family/ref_apply.h scitbx/array_family/shared_algebra.h scitbx/array_family/shared_apply.h scitbx/array_family/shared_plain_apply.h scitbx/array_family/shared_reductions.h scitbx/array_family/small_algebra.h scitbx/array_family/small_apply.h scitbx/array_family/small_plain_apply.h scitbx/array_family/small_reductions.h scitbx/array_family/tiny_algebra.h scitbx/array_family/tiny_apply.h scitbx/array_family/tiny_plain_apply.h scitbx/array_family/tiny_reductions.h scitbx/array_family/versa_algebra.h scitbx/array_family/versa_apply.h scitbx/array_family/versa_plain_apply.h scitbx/array_family/versa_reductions.h scitbx/array_family/boost_python/ scitbx/array_family/boost_python/flex_fwd.h scitbx/array_family/detail/ scitbx/array_family/detail/operator_functors.h scitbx/array_family/detail/std_imports.h smtbx/boost_python/ smtbx/boost_python/flex_fwd.h sent 347,323 bytes received 534 bytes 695,714.00 bytes/sec total size is 345,070 speedup is 0.99 building file list ... done sent 242 bytes received 12 bytes 508.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done boost_adaptbx/ boost_adaptbx/command_line/ boost_adaptbx/command_line/__init__.py boost_adaptbx/command_line/divide_by_zero.py boost_adaptbx/command_line/double_overflow.py boost_adaptbx/command_line/gcd.py boost_adaptbx/command_line/inexact.py boost_adaptbx/command_line/int_overflow.py boost_adaptbx/command_line/lcm.py boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py boost_adaptbx/command_line/segmentation_fault.py boost_adaptbx/command_line/show_environ_usage.py boost_adaptbx/command_line/show_platform_info.py sent 7,880 bytes received 231 bytes 16,222.00 bytes/sec total size is 6,883 speedup is 0.85 building file list ... done cbflib_adaptbx/ cbflib_adaptbx/command_line/ cbflib_adaptbx/command_line/__init__.py cbflib_adaptbx/command_line/dump.py sent 1,533 bytes received 60 bytes 3,186.00 bytes/sec total size is 1,215 speedup is 0.76 building file list ... done sent 139 bytes received 12 bytes 302.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done cctbx/ cctbx/command_line/ cctbx/command_line/__init__.py cctbx/command_line/auto_sharpen.py cctbx/command_line/brehm_diederichs.py cctbx/command_line/cctbx_test_nightly.py cctbx/command_line/cod_select_and_pickle.py cctbx/command_line/diffuse.py cctbx/command_line/eltbx.show_fp_fdp.py cctbx/command_line/euclidean_model_matching.py cctbx/command_line/find_reticular_twin_laws.py cctbx/command_line/form_factor_query.py cctbx/command_line/precession_view.py cctbx/command_line/qscore.py cctbx/command_line/samosa_join.py cctbx/command_line/samosa_scale.py cctbx/command_line/segment_and_split_map.py cctbx/command_line/space_group_info.py cctbx/command_line/structure_factor_timings.py cctbx/command_line/subgroups.py cctbx/command_line/version.py cctbx/command_line/wavelength_units.py cctbx/command_line/web.install.csh sent 43,161 bytes received 421 bytes 87,164.00 bytes/sec total size is 39,872 speedup is 0.91 building file list ... done sent 81 bytes received 12 bytes 186.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done crys3d/ crys3d/command_line/ crys3d/command_line/HKLinfo.py crys3d/command_line/HKLviewer.py crys3d/command_line/__init__.py crys3d/command_line/compare_datasets.py crys3d/command_line/hklview.py crys3d/command_line/make_install_HKLviewer_ChimeraX.py crys3d/command_line/model_viewer.py crys3d/command_line/multiplicity_viewer.py crys3d/command_line/qttbx.view_structure.py crys3d/command_line/visualize_r_factors.py sent 32,588 bytes received 212 bytes 65,600.00 bytes/sec total size is 31,684 speedup is 0.97 building file list ... done dxtbx/ dxtbx/command_line/ dxtbx/command_line/__init__.py dxtbx/command_line/any2nexus.py dxtbx/command_line/debug_memory.py dxtbx/command_line/depends_on.py dxtbx/command_line/detector_superpose.py dxtbx/command_line/display_parallax_correction.py dxtbx/command_line/dlsnxs2cbf.py dxtbx/command_line/image2pickle.py dxtbx/command_line/image_availability.py dxtbx/command_line/image_average.py dxtbx/command_line/install_format.py dxtbx/command_line/overload.py dxtbx/command_line/plot_detector_models.py dxtbx/command_line/print_header.py dxtbx/command_line/print_matching_images.py dxtbx/command_line/radial_average.py dxtbx/command_line/read_sequence.py dxtbx/command_line/saturation.py dxtbx/command_line/show_mask_info.py dxtbx/command_line/show_matching_formats.py dxtbx/command_line/show_registry.py dxtbx/command_line/simulate_collection.py sent 112,434 bytes received 440 bytes 225,748.00 bytes/sec total size is 110,557 speedup is 0.98 building file list ... done fable/ fable/command_line/ fable/command_line/__init__.py fable/command_line/cout.py fable/command_line/fem_include_search_paths.py fable/command_line/insert_write_at_start_of_each_procedure.py fable/command_line/read.py fable/command_line/show_calls.py fable/command_line/split.py sent 16,378 bytes received 155 bytes 33,066.00 bytes/sec total size is 15,611 speedup is 0.94 building file list ... done gltbx/ gltbx/command_line/ gltbx/command_line/__init__.py gltbx/command_line/try_imports.py sent 867 bytes received 60 bytes 1,854.00 bytes/sec total size is 606 speedup is 0.65 building file list ... done iotbx/ iotbx/command_line/ iotbx/command_line/__init__.py iotbx/command_line/biomt_reconstruction.py iotbx/command_line/blast_pdb.py iotbx/command_line/build_phil_cache.py iotbx/command_line/cbf_read.py iotbx/command_line/cif.as_miller_arrays.py iotbx/command_line/cif.as_xray_structure.py iotbx/command_line/cif.validate.py iotbx/command_line/cif_as_pdb.py iotbx/command_line/cns.reflection_reader.py iotbx/command_line/cns.sdb_reader.py iotbx/command_line/cns.transfer_crystal_symmetry.py iotbx/command_line/cns_as_mtz.py iotbx/command_line/crystal_symmetry_from_any.py iotbx/command_line/csv_as_mtz.py iotbx/command_line/dano_as_amplitudes.py iotbx/command_line/detector_image_as_png.py iotbx/command_line/distance_least_squares.py iotbx/command_line/dtrek.to_cns.py iotbx/command_line/effective_resolution.py iotbx/command_line/emma.py iotbx/command_line/explore_metric_symmetry.py iotbx/command_line/export_scalepack_unmerged.py iotbx/command_line/file_reader.py iotbx/command_line/flip_symmetric_amino_acids.py iotbx/command_line/french_wilson.py iotbx/command_line/get_pubmed_citation.py iotbx/command_line/lattice_symmetry.py iotbx/command_line/merging_statistics.py iotbx/command_line/mtrix_reconstruction.py iotbx/command_line/mtz.dump.py iotbx/command_line/mtz_as_cif.py iotbx/command_line/patterson_map.py iotbx/command_line/pdb.as_xray_structure.py iotbx/command_line/pdb.b_factor_stats.py iotbx/command_line/pdb.box_around_molecule.py iotbx/command_line/pdb.hierarchy.py iotbx/command_line/pdb.insert_scale_records.py iotbx/command_line/pdb.join_fragment_files.py iotbx/command_line/pdb.link_as_geometry_restraints_edits.py iotbx/command_line/pdb.print_sequence.py iotbx/command_line/pdb.superpose_atoms_by_name.py iotbx/command_line/pdb.superpose_centers_of_mass.py iotbx/command_line/pdb_add_conformations.py iotbx/command_line/pdb_as_cif.py iotbx/command_line/pdb_as_fasta.py iotbx/command_line/pdb_cif_conversion.py iotbx/command_line/pdb_get_citation.py iotbx/command_line/pdb_labels_comparison.py iotbx/command_line/pdb_labels_diff.py iotbx/command_line/pdb_remediator.py iotbx/command_line/pdb_show_connectivity.py iotbx/command_line/pdb_split_models.py iotbx/command_line/phil.py iotbx/command_line/poscar_as_xray_structure.py iotbx/command_line/r_free_flags_accumulation.py iotbx/command_line/r_free_flags_as_cns.py iotbx/command_line/r_free_flags_completion_simple.py iotbx/command_line/reflection_file_converter.py iotbx/command_line/reflection_file_editor.py iotbx/command_line/reflection_file_reader.py iotbx/command_line/reflection_statistics.py iotbx/command_line/reindex.py iotbx/command_line/shelx.as_cif.py iotbx/command_line/shelx.as_xray_structure.py iotbx/command_line/shelx.dump_as_python.py iotbx/command_line/show_distances.py iotbx/command_line/show_systematic_absences.py iotbx/command_line/simple_map_coefficients.py iotbx/command_line/sort_atoms.py iotbx/command_line/split_data_cif.py iotbx/command_line/symmetry_search.py iotbx/command_line/unique_with_biomt.py iotbx/command_line/xplor.map.show_summary.py sent 252,618 bytes received 1,428 bytes 508,092.00 bytes/sec total size is 246,561 speedup is 0.97 building file list ... done libtbx/ libtbx/command_line/ libtbx/command_line/__init__.py libtbx/command_line/add_docstrings_with_ai.py libtbx/command_line/analyse_code_comments.py libtbx/command_line/any2unix.py libtbx/command_line/assert_line_count.py libtbx/command_line/assert_not_show_diff.py libtbx/command_line/assert_stdin.py libtbx/command_line/assert_stdin_contains_strings.py libtbx/command_line/assert_stdin_ends_with.py libtbx/command_line/bash.sh libtbx/command_line/bibtex.sh libtbx/command_line/bootstrap.py libtbx/command_line/bundle_as_exe.py libtbx/command_line/bundle_as_selfx.csh libtbx/command_line/cctbx_chunk.py libtbx/command_line/check_libcpp.py libtbx/command_line/clean_clutter.py libtbx/command_line/clear_paths.py libtbx/command_line/configure.bat libtbx/command_line/configure.sh libtbx/command_line/create_cctbx_bundle_for_installer.py libtbx/command_line/create_install_script_bat.py libtbx/command_line/create_installer.py libtbx/command_line/create_mac_app.py libtbx/command_line/create_selfx.py libtbx/command_line/create_unzipsfx.py libtbx/command_line/create_windows_exe.py libtbx/command_line/csh.sh libtbx/command_line/dtrace.py libtbx/command_line/easy_qsub.py libtbx/command_line/env_run.py libtbx/command_line/epydoc_run.py libtbx/command_line/exec.sh libtbx/command_line/extract_code_from_txt.py libtbx/command_line/find_clutter.py libtbx/command_line/find_files.py libtbx/command_line/find_in_repositories.py libtbx/command_line/find_old_style_classes.py libtbx/command_line/find_pdb_mmcif_problems.py libtbx/command_line/find_reserved_names.py libtbx/command_line/find_under_build.py libtbx/command_line/find_untested.py libtbx/command_line/find_unused_imports.py libtbx/command_line/find_unused_imports_crude.py libtbx/command_line/gdb.sh libtbx/command_line/git_avoid_merges.py libtbx/command_line/help.py libtbx/command_line/import_all_ext.py libtbx/command_line/import_all_python.py libtbx/command_line/install.py libtbx/command_line/install_conda.py libtbx/command_line/ipython_shell_start.py libtbx/command_line/latex.sh libtbx/command_line/line_count.py libtbx/command_line/list_files.py libtbx/command_line/list_modules.py libtbx/command_line/list_source_files_sorted_by_size.py libtbx/command_line/make_dist.py libtbx/command_line/make_sphinx_html.py libtbx/command_line/nequal.py libtbx/command_line/parallel_simple.py libtbx/command_line/path_utility.py libtbx/command_line/pdflatex.sh libtbx/command_line/phil.py libtbx/command_line/prime_factors_of.py libtbx/command_line/printenv.py libtbx/command_line/py_compile_all.py libtbx/command_line/raise_exception_for_testing.py libtbx/command_line/refresh.bat libtbx/command_line/refresh.sh libtbx/command_line/reindent.py libtbx/command_line/remote_processing.py libtbx/command_line/remove_tree.py libtbx/command_line/remove_unused_imports.py libtbx/command_line/resource_monitor_plot.py libtbx/command_line/run_pickled_function.py libtbx/command_line/run_tests_parallel.py libtbx/command_line/scons.py libtbx/command_line/seconds_since_the_epoch.py libtbx/command_line/sge_available_slots.py libtbx/command_line/sge_qstat_counts.py libtbx/command_line/sh.sh libtbx/command_line/show_all_on_path.py libtbx/command_line/show_bin_path.py libtbx/command_line/show_build_options.py libtbx/command_line/show_build_path.py libtbx/command_line/show_but_no_repr.py libtbx/command_line/show_commands.py libtbx/command_line/show_date_and_time.py libtbx/command_line/show_dist_paths.py libtbx/command_line/show_env.py libtbx/command_line/show_environ_usage.py libtbx/command_line/show_full_command_path.py libtbx/command_line/show_host_and_user.py libtbx/command_line/show_include_paths.py libtbx/command_line/show_lib_path.py libtbx/command_line/show_module_dependencies.py libtbx/command_line/show_number_of_processors.py libtbx/command_line/show_numeric_version.py libtbx/command_line/show_numpy_version.py libtbx/command_line/show_python_dependencies.py libtbx/command_line/show_python_sys_executable.py libtbx/command_line/show_pythonpath.py libtbx/command_line/show_repository_paths.py libtbx/command_line/show_tests.py libtbx/command_line/show_variable_names.py libtbx/command_line/sphinx_build.py libtbx/command_line/start_binary_bundle.py libtbx/command_line/start_process.py libtbx/command_line/tcsh.sh libtbx/command_line/unpack_in_sources.csh libtbx/command_line/valgrind.sh libtbx/command_line/wait_for_file.py sent 232,614 bytes received 2,169 bytes 469,566.00 bytes/sec total size is 223,279 speedup is 0.95 building file list ... done mmtbx/ mmtbx/command_line/ mmtbx/command_line/__init__.py mmtbx/command_line/altloc_remediate.py mmtbx/command_line/angle.py mmtbx/command_line/apply_ncs_to_ligand.py mmtbx/command_line/arginine_geometry.py mmtbx/command_line/atom_valence_simple.py mmtbx/command_line/barbed_wire_analysis.py mmtbx/command_line/cablam.py mmtbx/command_line/cablam_idealization.py mmtbx/command_line/cbetadev.py mmtbx/command_line/cc_star.py mmtbx/command_line/chiral_validation.py mmtbx/command_line/cif_as_mtz.py mmtbx/command_line/clashscore.py mmtbx/command_line/clashscore2.py mmtbx/command_line/comparama.py mmtbx/command_line/debug_riding.py mmtbx/command_line/density_modification.py mmtbx/command_line/development_aev.py mmtbx/command_line/development_fem.py mmtbx/command_line/distance_difference.py mmtbx/command_line/dynamics.py mmtbx/command_line/electrons.py mmtbx/command_line/emringer.py mmtbx/command_line/emringer_score.py mmtbx/command_line/estimate_bijvoet_ratio.py mmtbx/command_line/f000.py mmtbx/command_line/fab_elbow_angle.py mmtbx/command_line/fake_f_obs.py mmtbx/command_line/fetch_pdb.py mmtbx/command_line/find_peaks_holes.py mmtbx/command_line/find_residue_in_pdb.py mmtbx/command_line/find_tls_groups.py mmtbx/command_line/fmodel.py mmtbx/command_line/fobs_minus_fobs_map.py mmtbx/command_line/geometry_minimization.py mmtbx/command_line/grow_density.py mmtbx/command_line/hbond.py mmtbx/command_line/helix_sheet_recs_as_pdb_files.py mmtbx/command_line/holton_geometry_validation.py mmtbx/command_line/hydrogenate.py mmtbx/command_line/kinemage.py mmtbx/command_line/ligand_restraints_validation.py mmtbx/command_line/map_box.py mmtbx/command_line/map_comparison.py mmtbx/command_line/map_to_model_histogram.py mmtbx/command_line/map_to_structure_factors.py mmtbx/command_line/maps.py mmtbx/command_line/mask.py mmtbx/command_line/massage_data.py mmtbx/command_line/matthews.py mmtbx/command_line/maximum_entropy_map.py mmtbx/command_line/model_idealization.py mmtbx/command_line/model_map.py mmtbx/command_line/model_model_distances.py mmtbx/command_line/model_vs_data.py mmtbx/command_line/model_vs_map.py mmtbx/command_line/model_vs_sequence.py mmtbx/command_line/models_as_chains.py mmtbx/command_line/molprobity.py mmtbx/command_line/mon_lib_cif_triage.py mmtbx/command_line/mp_geo.py mmtbx/command_line/mp_validate_bonds.py mmtbx/command_line/mtz2map.py mmtbx/command_line/next_gen_atom_typing.py mmtbx/command_line/next_gen_residue_typing.py mmtbx/command_line/nonbonded_overlaps.py mmtbx/command_line/omegalyze.py mmtbx/command_line/pdb_atom_selection.py mmtbx/command_line/pdb_interpretation.py mmtbx/command_line/pdbtools.py mmtbx/command_line/perigee.py mmtbx/command_line/plan_sad_experiment.py mmtbx/command_line/polder.py mmtbx/command_line/prepare_pdb_deposition.py mmtbx/command_line/probe2.py mmtbx/command_line/probescore_ligand.py mmtbx/command_line/process_predicted_model.py mmtbx/command_line/prune_model.py mmtbx/command_line/quantum_interface.py mmtbx/command_line/r_factor_statistics.py mmtbx/command_line/rama_z.py mmtbx/command_line/ramalyze.py mmtbx/command_line/rank_scale_map.py mmtbx/command_line/real_space_correlation.py mmtbx/command_line/real_space_diff_map.py mmtbx/command_line/rebuild_cablam_cache.py mmtbx/command_line/rebuild_rotarama_cache.py mmtbx/command_line/reciprocal_space_arrays.py mmtbx/command_line/reduce2.py mmtbx/command_line/reduce_cryoem_resolution.py mmtbx/command_line/refine_anomalous_substructure.py mmtbx/command_line/remove_outliers.py mmtbx/command_line/ribbons.py mmtbx/command_line/rigid_bond_test.py mmtbx/command_line/ringer.py mmtbx/command_line/rna_validate.py mmtbx/command_line/rna_validate_bonds.py mmtbx/command_line/rna_validate_puckers.py mmtbx/command_line/rna_validate_suites.py mmtbx/command_line/rotalyze.py mmtbx/command_line/search_pdb_symmetry.py mmtbx/command_line/secondary_structure_restraints.py mmtbx/command_line/secondary_structure_validation.py mmtbx/command_line/select_best_starting_model.py mmtbx/command_line/show_r_factors_by_shell.py mmtbx/command_line/sisa.py mmtbx/command_line/sort_hetatms.py mmtbx/command_line/ss_idealization.py mmtbx/command_line/suitename.py mmtbx/command_line/suitename_old.py mmtbx/command_line/super.py mmtbx/command_line/superpose.py mmtbx/command_line/taam_minus_iam.py mmtbx/command_line/table_one.py mmtbx/command_line/tls.py mmtbx/command_line/tls_analysis.py mmtbx/command_line/tls_as_xyz.py mmtbx/command_line/undowser.py mmtbx/command_line/undowser2.py mmtbx/command_line/validate_H_cl_app.py mmtbx/command_line/validate_ligands.py mmtbx/command_line/validation_summary.py mmtbx/command_line/verify_mon_lib_data.py mmtbx/command_line/water_b_factors.py mmtbx/command_line/where_is_that_cif_file.py mmtbx/command_line/xmanip.py mmtbx/command_line/xtrapol8.py mmtbx/command_line/xtriage.py mmtbx/regression/ mmtbx/regression/command_line/ mmtbx/regression/command_line/tst_find_residue_in_pdb.py sent 730,779 bytes received 2,498 bytes 1,466,554.00 bytes/sec total size is 720,263 speedup is 0.98 building file list ... done sent 70 bytes received 12 bytes 164.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done rstbx/ rstbx/command_line/ rstbx/command_line/__init__.py rstbx/command_line/example_viewer.py rstbx/command_line/index.py rstbx/command_line/simage.create.py rstbx/command_line/simage.explore_completeness.py rstbx/command_line/simage.solver.py rstbx/command_line/simage.wx_display.py rstbx/command_line/slip_viewer.py rstbx/command_line/viewer.py sent 12,285 bytes received 193 bytes 24,956.00 bytes/sec total size is 11,139 speedup is 0.89 building file list ... done scitbx/ scitbx/command_line/ scitbx/command_line/__init__.py scitbx/command_line/apply_tapenade_hints.py scitbx/command_line/generate_error_h.py scitbx/command_line/histogram.py scitbx/command_line/show_exp_times.py scitbx/command_line/show_sizes.py scitbx/command_line/unicode_examples.py sent 11,851 bytes received 155 bytes 24,012.00 bytes/sec total size is 10,021 speedup is 0.83 building file list ... done sent 154 bytes received 12 bytes 332.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done smtbx/ smtbx/command_line/ smtbx/command_line/__init__.py smtbx/command_line/absolute_structure.py smtbx/command_line/anom_refine.py smtbx/command_line/benchmark_refinement.py smtbx/command_line/masks.py smtbx/command_line/refine.py sent 38,577 bytes received 136 bytes 77,426.00 bytes/sec total size is 37,436 speedup is 0.97 building file list ... done spotfinder/ spotfinder/command_line/ spotfinder/command_line/__init__.py spotfinder/command_line/find_active_area.py spotfinder/command_line/image_viewer.py spotfinder/command_line/mp_spotfinder_server_read_file.py spotfinder/command_line/signal_strength.py spotfinder/command_line/sweep_strength.py spotfinder/command_line/thin_client.py sent 23,567 bytes received 155 bytes 47,444.00 bytes/sec total size is 22,750 speedup is 0.96 building file list ... done sent 81 bytes received 12 bytes 186.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done wxtbx/ wxtbx/command_line/ wxtbx/command_line/__init__.py wxtbx/command_line/anomalous_differences_histogram.py wxtbx/command_line/b_plot.py wxtbx/command_line/inspect_r_free_flags.py wxtbx/command_line/loggraph.py wxtbx/command_line/pdb_editor.py wxtbx/command_line/pdb_statistics.py wxtbx/command_line/plan_sad_experiment.py wxtbx/command_line/plot_anomalous_scattering.py wxtbx/command_line/show_file_info.py wxtbx/command_line/wxpython.py wxtbx/command_line/xtriage.py sent 17,088 bytes received 250 bytes 34,676.00 bytes/sec total size is 16,108 speedup is 0.93 building file list ... done sent 157 bytes received 12 bytes 338.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done sent 242 bytes received 12 bytes 508.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done boost_adaptbx/graph/ boost_adaptbx/graph/tests/ boost_adaptbx/graph/tests/tst_graph.py boost_adaptbx/graph/tests/tst_graph_breadth_first_search.py boost_adaptbx/graph/tests/tst_graph_clustering_algorithm.py boost_adaptbx/graph/tests/tst_graph_connected_component_algorithm.py boost_adaptbx/graph/tests/tst_graph_graph_structure_comparison.py boost_adaptbx/graph/tests/tst_graph_maximum_clique.py boost_adaptbx/graph/tests/tst_graph_metric.py boost_adaptbx/graph/tests/tst_graph_min_cut_max_flow.py boost_adaptbx/graph/tests/tst_graph_minimum_cut_enumerate.py boost_adaptbx/graph/tests/tst_graph_utility.py boost_adaptbx/tests/ boost_adaptbx/tests/tst_boost_thread.py boost_adaptbx/tests/tst_char_array.py boost_adaptbx/tests/tst_deprecation_tools.py boost_adaptbx/tests/tst_libc_backtrace.py boost_adaptbx/tests/tst_optional.py boost_adaptbx/tests/tst_optional_copy.cpp boost_adaptbx/tests/tst_optional_copy.h boost_adaptbx/tests/tst_python_streambuf.py boost_adaptbx/tests/tst_rational.py boost_adaptbx/tests/tst_std_pair.py boost_adaptbx/tests/tst_stderr_stdout.py boost_adaptbx/tests/tst_stdin.py boost_adaptbx/tests/tst_stdout.py boost_adaptbx/tests/tst_string_representation.py boost_adaptbx/tests/tst_swig_args.py boost_adaptbx/tests/tst_tuple.py sent 91,617 bytes received 515 bytes 184,264.00 bytes/sec total size is 89,629 speedup is 0.97 building file list ... done cbflib_adaptbx/detectors/ cbflib_adaptbx/detectors/tst_memory.cpp sent 1,195 bytes received 34 bytes 2,458.00 bytes/sec total size is 967 speedup is 0.79 building file list ... done ccp4io_adaptbx/ ccp4io_adaptbx/tst.py ccp4io_adaptbx/dev/ ccp4io_adaptbx/dev/tst_fftlib.py sent 9,496 bytes received 60 bytes 19,112.00 bytes/sec total size is 9,204 speedup is 0.96 building file list ... done cctbx/adp_restraints/ cctbx/adp_restraints/tst_ext.py cctbx/adptbx/ cctbx/adptbx/boost_python/ cctbx/adptbx/boost_python/tst_adptbx.py cctbx/adptbx/boost_python/tst_hirshfeld.py cctbx/array_family/ cctbx/array_family/boost_python/ cctbx/array_family/boost_python/tst_flex.py cctbx/covariance/ cctbx/covariance/tests/ cctbx/covariance/tests/tst_covariance.py cctbx/crystal/ cctbx/crystal/tst_distance_based_connectivity.py cctbx/crystal/tst_ext.py cctbx/crystal/tst_super_cell.py cctbx/development/ cctbx/development/tst_cns_epsilon.py cctbx/development/tst_cns_hl.py cctbx/dispersion/ cctbx/dispersion/tests/ cctbx/dispersion/tests/tst_kramers_kronig.py cctbx/dispersion/tests/tst_kramers_kronig_helper.py cctbx/dispersion/tests/tst_kramers_kronig_optimize.py cctbx/dmtbx/ cctbx/dmtbx/boost_python/ cctbx/dmtbx/boost_python/tst_dmtbx.py cctbx/eltbx/ cctbx/eltbx/tests/ cctbx/eltbx/tests/tst_attenuation_coefficient.py cctbx/eltbx/tests/tst_chemical_elements.py cctbx/eltbx/tests/tst_covalent_radii.py cctbx/eltbx/tests/tst_formula.py cctbx/eltbx/tests/tst_henke.py cctbx/eltbx/tests/tst_icsd_radii.py cctbx/eltbx/tests/tst_neutron.py cctbx/eltbx/tests/tst_sasaki.py cctbx/eltbx/tests/tst_tiny_pse.py cctbx/eltbx/tests/tst_wavelengths.py cctbx/eltbx/tests/tst_xray_scattering.py cctbx/examples/ cctbx/examples/tst_exp_i_alpha_derivatives.py cctbx/examples/tst_g_exp_i_alpha_derivatives.py cctbx/examples/tst_phase_o_phrenia.py cctbx/examples/tst_space_subgroups.py cctbx/examples/tst_structure_factor_derivatives.py cctbx/examples/tst_structure_factor_derivatives_2.py cctbx/examples/tst_structure_factor_derivatives_3.py cctbx/examples/tst_structure_factor_derivatives_4.py cctbx/examples/merging/ cctbx/examples/merging/tst_permutations.py cctbx/geometry/ cctbx/geometry/tests/ cctbx/geometry/tests/tst_geometry.py cctbx/geometry_restraints/ cctbx/geometry_restraints/tst_angle_derivs.py cctbx/geometry_restraints/tst_ext.py cctbx/geometry_restraints/tst_motif.py cctbx/geometry_restraints/tst_process_nonbonded_proxies.py cctbx/geometry_restraints/tst_proxy_registry.py cctbx/maptbx/ cctbx/maptbx/tst_MapPeakLocator.py cctbx/maptbx/tst_asymmetric_map.py cctbx/maptbx/tst_atom_curves.py cctbx/maptbx/tst_atom_radius_as_central_peak_width.py cctbx/maptbx/tst_bcr.py cctbx/maptbx/tst_ccp.py cctbx/maptbx/tst_get_percentile_cutoffs.py cctbx/maptbx/tst_interpolation.py cctbx/maptbx/tst_interpolation_2.py cctbx/maptbx/tst_loft.py cctbx/maptbx/tst_map_peak_3d_as_2d.py cctbx/maptbx/tst_mask.py cctbx/maptbx/tst_peak_volume_estimate.py cctbx/maptbx/tst_qscore.py cctbx/maptbx/tst_real_space_refinement_simple.py cctbx/maptbx/tst_resolution_from_map_and_model.py cctbx/maptbx/tst_target_and_gradients.py cctbx/maptbx/bcr/ cctbx/maptbx/bcr/tst_adp_refine.py cctbx/maptbx/bcr/tst_example.py cctbx/maptbx/bcr/tst_qmap_02.py cctbx/maptbx/bcr/tst_table.py cctbx/maptbx/bcr/tst_two_atoms.py cctbx/maptbx/bcr/tst_vrm.py cctbx/maptbx/bcr/tst_vrm2.py cctbx/maptbx/boost_python/ cctbx/maptbx/boost_python/tst_maptbx.py cctbx/masks/ cctbx/masks/tests/ cctbx/masks/tests/tst_flood_fill.py cctbx/math/ cctbx/math/boost_python/ cctbx/math/boost_python/tst_math.py cctbx/miller/ cctbx/miller/tst_map_to_asu_isym.py cctbx/miller/tst_reindexing.py cctbx/miller/boost_python/ cctbx/miller/boost_python/tst_miller.py cctbx/multipolar/ cctbx/multipolar/regression/ cctbx/multipolar/regression/tst_multipolar.py cctbx/omz/ cctbx/omz/tst_bfgs.py cctbx/omz/tst_cod.csh cctbx/omz/tst_dev.py cctbx/regression/ cctbx/regression/tst_adp_aniso_restraints.py cctbx/regression/tst_adp_constraints.py cctbx/regression/tst_adp_constraints_cartesian.py cctbx/regression/tst_amplitude_normalisation.py cctbx/regression/tst_change_basis.py cctbx/regression/tst_connectivity.py cctbx/regression/tst_connectivity_allsym.py cctbx/regression/tst_coordination_sequences.py cctbx/regression/tst_create_models_or_maps.py cctbx/regression/tst_crystal.py cctbx/regression/tst_crystal_asu_clusters.py cctbx/regression/tst_crystal_close_packing.py cctbx/regression/tst_diffuse.py cctbx/regression/tst_direct_scaling.py cctbx/regression/tst_direct_space_asu.py cctbx/regression/tst_emma.py cctbx/regression/tst_expand_to_p1.py cctbx/regression/tst_f_model.py cctbx/regression/tst_fast_nv1995.py cctbx/regression/tst_fcalc_fft_stability.py cctbx/regression/tst_find_best_cell.py cctbx/regression/tst_fourier_transform_real_part_at_x.py cctbx/regression/tst_french_wilson.py cctbx/regression/tst_geometry_restraints.py cctbx/regression/tst_geometry_restraints_2.py cctbx/regression/tst_geometry_restraints_lbfgs.py cctbx/regression/tst_grm_modifications.py cctbx/regression/tst_grm_modifications_rm.py cctbx/regression/tst_grm_pickling.py cctbx/regression/tst_grouped_data.py cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py cctbx/regression/tst_krivy_gruber.py cctbx/regression/tst_loc_res.py cctbx/regression/tst_map_is_periodic.py cctbx/regression/tst_map_weights_for_symmetry_summation.py cctbx/regression/tst_maptbx_box.py cctbx/regression/tst_maptbx_mask.py cctbx/regression/tst_maptbx_structure_factors.py cctbx/regression/tst_match_bijvoet_mates.py cctbx/regression/tst_math_module.py cctbx/regression/tst_mem.py cctbx/regression/tst_mem_2.py cctbx/regression/tst_miller.py cctbx/regression/tst_miller_data_manipulation.py cctbx/regression/tst_miller_double_step_filtration.py cctbx/regression/tst_miller_fft_map.py cctbx/regression/tst_miller_lookup_utils.py cctbx/regression/tst_miller_merge_equivalents.py cctbx/regression/tst_miller_statistics.py cctbx/regression/tst_niggli_reduction_cpp.py cctbx/regression/tst_pair_asu_table.py cctbx/regression/tst_pointgroup_tools.py cctbx/regression/tst_prepare_map_for_docking.py cctbx/regression/tst_r_free_utils.py cctbx/regression/tst_reciprocal_space_asu.py cctbx/regression/tst_refine_xray_curvs.py cctbx/regression/tst_reflection_statistics.py cctbx/regression/tst_sampled_model_density.py cctbx/regression/tst_sf_low_res_accuracy.py cctbx/regression/tst_sgtbx.py cctbx/regression/tst_sgtbx_denominators.py cctbx/regression/tst_sgtbx_harker.py cctbx/regression/tst_sgtbx_lattice_symmetry.py cctbx/regression/tst_sgtbx_site_constraints.py cctbx/regression/tst_sgtbx_special_op_simplifier.py cctbx/regression/tst_sgtbx_subgroups.py cctbx/regression/tst_sgtbx_tidy_pickling.py cctbx/regression/tst_show_cosets.py cctbx/regression/tst_space_group_type_tidy_cb_op_t.py cctbx/regression/tst_sphericity.py cctbx/regression/tst_statistics_graphs.py cctbx/regression/tst_triplet_generator.py cctbx/regression/tst_twin_target.py cctbx/regression/tst_wavelength_units.py cctbx/regression/tst_web_change_basis.py cctbx/regression/tst_weighting_schemes.py cctbx/regression/tst_wilson_plot.py cctbx/regression/tst_xray.py cctbx/regression/tst_xray_derivatives.py cctbx/regression/tst_xray_fast_gradients.py cctbx/regression/tst_xray_minimization.py cctbx/regression/tst_xray_minimization_failure.py cctbx/regression/tst_xray_target_functors.py cctbx/sgtbx/ cctbx/sgtbx/boost_python/ cctbx/sgtbx/boost_python/tst_N_fold_rot.py cctbx/sgtbx/boost_python/tst_sgtbx.py cctbx/sgtbx/direct_space_asu/ cctbx/sgtbx/direct_space_asu/proto/ cctbx/sgtbx/direct_space_asu/proto/tst_asu.cpp cctbx/sgtbx/direct_space_asu/proto/tst_asu.py cctbx/symmetry_search/ cctbx/symmetry_search/tests/ cctbx/symmetry_search/tests/tst_from_map.py cctbx/symmetry_search/tests/tst_goodness_of_symmetry.py cctbx/translation_search/ cctbx/translation_search/boost_python/ cctbx/translation_search/boost_python/tst_translation_search.py cctbx/uctbx/ cctbx/uctbx/boost_python/ cctbx/uctbx/boost_python/tst_crystal_orientation.py cctbx/uctbx/boost_python/tst_uctbx.py cctbx/uctbx/lrl/ cctbx/uctbx/lrl/tst_match_lattices.py cctbx/xray/ cctbx/xray/boost_python/ cctbx/xray/boost_python/tst_f_model.py cctbx/xray/boost_python/tst_targets_fd.py cctbx/xray/boost_python/tst_xray.py cctbx/xray/observations/ cctbx/xray/observations/tst_observations.py cctbx/xray/targets/ cctbx/xray/targets/tst_r1.py cctbx/xray/targets/tst_shelxl_wght_ls.py sent 2,132,717 bytes received 3,447 bytes 4,272,328.00 bytes/sec total size is 2,118,404 speedup is 0.99 building file list ... done cma_es/ cma_es/tst_cma_es.py sent 3,163 bytes received 38 bytes 6,402.00 bytes/sec total size is 3,008 speedup is 0.94 building file list ... done crys3d/regression/ crys3d/regression/tst_HKLviewerOSbrowserBinFSigF.py crys3d/regression/tst_HKLviewerOSbrowserSliceK-9.py crys3d/regression/tst_HKLviewerQtGuiBinFSigF.py crys3d/regression/tst_HKLviewerQtGuiSliceK-9.py crys3d/regression/tst_hklinfo.py crys3d/regression/tst_origarrays_from_cif.py crys3d/regression/tst_websocket.py sent 47,909 bytes received 148 bytes 96,114.00 bytes/sec total size is 47,205 speedup is 0.98 building file list ... done sent 595 bytes received 12 bytes 1,214.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done fable/tst_cout.py fable/tst_cout_compile.py fable/tst_equivalence.py fable/tst_ext.py fable/tst_read.py fable/test/ fable/test/tst_command_line.py fable/test/tst_io.py fable/test/tst_separate_files.py fable/test/tst_show_calls.py sent 152,770 bytes received 186 bytes 305,912.00 bytes/sec total size is 151,869 speedup is 0.99 building file list ... done gltbx/tst.py gltbx/tst_ellipsoids.py gltbx/tst_fonts.py gltbx/tst_viewer_utils.py sent 8,480 bytes received 88 bytes 17,136.00 bytes/sec total size is 8,108 speedup is 0.95 building file list ... done iotbx/bioinformatics/ iotbx/bioinformatics/test/ iotbx/bioinformatics/test/tst_alignment_as_hsearch.py iotbx/bioinformatics/test/tst_ebi_wu_blast_xml.py iotbx/bioinformatics/test/tst_local_blast.py iotbx/bioinformatics/test/tst_ncbi_blast_xml.py iotbx/ccp4_map/ iotbx/ccp4_map/tst.py iotbx/ccp4_map/tst_input.map iotbx/cif/ iotbx/cif/tests/ iotbx/cif/tests/tst_citations.py iotbx/cif/tests/tst_cod.py iotbx/cif/tests/tst_crystal_symmetry_builder.py iotbx/cif/tests/tst_geometry.py iotbx/cif/tests/tst_lex_parse_build.py iotbx/cif/tests/tst_miller_array_builder.py iotbx/cif/tests/tst_model.py iotbx/cif/tests/tst_model_builder.py iotbx/cif/tests/tst_parser.py iotbx/cif/tests/tst_restraints.py iotbx/cif/tests/tst_ucif_examples_compilation.py iotbx/cif/tests/tst_validation.py iotbx/cns/ iotbx/cns/tst_cns.py iotbx/detectors/ iotbx/detectors/tst_adsc.py iotbx/detectors/tst_cbf_comp_read_meth.py iotbx/detectors/tst_debug_write.py iotbx/detectors/tst_detectors.py iotbx/detectors/tst_py_cbf.py iotbx/dsn6/ iotbx/dsn6/tst.py iotbx/examples/ iotbx/examples/tst_mtz_free_flipper.py iotbx/examples/pdb_truncate_to_ala/ iotbx/examples/pdb_truncate_to_ala/tst.py iotbx/gui_tools/ iotbx/gui_tools/tst.py iotbx/kriber/ iotbx/kriber/tst_strudat.py iotbx/mtz/ iotbx/mtz/tst.py iotbx/mtz/tst_dano.py iotbx/mtz/tst_ext.py iotbx/mtz/tst_extract_from_symmetry_lib.py iotbx/mtz/tst_miller_dict.py iotbx/mtz/tst_unmerged.py iotbx/pdb/ iotbx/pdb/tst_atom_name_interpretation.py iotbx/pdb/tst_atom_selection.py iotbx/pdb/tst_atom_selection_string.py iotbx/pdb/tst_ext.py iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py iotbx/pdb/tst_hierarchy.py iotbx/pdb/tst_hierarchy_atom_sort.py iotbx/pdb/tst_hierarchy_flip_symmetric.py iotbx/pdb/tst_hierarchy_flip_symmetric_2.py iotbx/pdb/tst_input_pickling.py iotbx/pdb/tst_mmcif.py iotbx/pdb/tst_mmcif_hierarchy.py iotbx/pdb/tst_mmcif_hierarchy_2.py iotbx/pdb/tst_pdb.py iotbx/pdb/tst_read_mtrix_records_from_cif.py iotbx/pdb/tst_rna_dna_atom_names.py iotbx/pdb/tst_secondary_structure.py iotbx/pdb/tst_secondary_structure_2.py iotbx/pdb/tst_tls.py iotbx/pdb/tst_utils.py iotbx/pdb/remediation/ iotbx/pdb/remediation/tst_remediator.py iotbx/regression/ iotbx/regression/tst_add_conformations.py iotbx/regression/tst_all_chain_ids.py iotbx/regression/tst_atom_selections_10k.py iotbx/regression/tst_bioinformatics.py iotbx/regression/tst_box_around_molecule.py iotbx/regression/tst_cif_1.py iotbx/regression/tst_cif_as_pdb_1atom.py iotbx/regression/tst_cli_parser.py iotbx/regression/tst_crystal_symmetry_from_any.py iotbx/regression/tst_csv_utils.py iotbx/regression/tst_data_manager.py iotbx/regression/tst_data_plots.py iotbx/regression/tst_examples.py iotbx/regression/tst_export_scalepack_unmerged.py iotbx/regression/tst_extract_xtal_data.py iotbx/regression/tst_fetch.py iotbx/regression/tst_file_io.py iotbx/regression/tst_file_reader.py iotbx/regression/tst_generate_n_char_string.py iotbx/regression/tst_group_rounding.py iotbx/regression/tst_hierarchy_altlocs.py iotbx/regression/tst_hierarchy_copy_select.py iotbx/regression/tst_hierarchy_forward_compatible_pdb.py iotbx/regression/tst_hierarchy_id_str.py iotbx/regression/tst_hierarchy_long_chain_ids_1.py iotbx/regression/tst_hierarchy_long_resname_1.py iotbx/regression/tst_hierarchy_long_resname_2.py iotbx/regression/tst_hierarchy_long_resname_3.py iotbx/regression/tst_hierarchy_long_resname_4.py iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py iotbx/regression/tst_hierarchy_occupancies_rounding.py iotbx/regression/tst_hierarchy_pdb_v3.py iotbx/regression/tst_lattice_symmetry.py iotbx/regression/tst_map_manager.py iotbx/regression/tst_map_manager_2.py iotbx/regression/tst_map_manager_wrapping.py iotbx/regression/tst_map_model_manager.py iotbx/regression/tst_map_model_manager_2.py iotbx/regression/tst_map_model_manager_3.py iotbx/regression/tst_map_model_manager_4.py iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py iotbx/regression/tst_map_model_manager_call_consistency.py iotbx/regression/tst_map_model_manager_cif.py iotbx/regression/tst_map_model_manager_external_sharpening_7.py iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py iotbx/regression/tst_map_model_manager_local_resolution_10.py iotbx/regression/tst_map_model_manager_model_sharpening_5.py iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py iotbx/regression/tst_map_model_manager_tls_from_map_8.py iotbx/regression/tst_map_tools.py iotbx/regression/tst_merging_statistics.py iotbx/regression/tst_miller_sort_asu.py iotbx/regression/tst_mmcif_input.py iotbx/regression/tst_mmcif_multimodel.py iotbx/regression/tst_mmcif_segids.py iotbx/regression/tst_mmcif_to_from_hierarchy.py iotbx/regression/tst_mrc_io.py iotbx/regression/tst_mtz_as_cif.py iotbx/regression/tst_patterson.py iotbx/regression/tst_pdb_as_cif.py iotbx/regression/tst_pdb_as_fasta.py iotbx/regression/tst_pdb_cif_cells.py iotbx/regression/tst_pdb_cif_inputs.py iotbx/regression/tst_pdb_link_records.py iotbx/regression/tst_pdbx_mmcif_tutorial.py iotbx/regression/tst_phases.py iotbx/regression/tst_phil.py iotbx/regression/tst_poscar.py iotbx/regression/tst_reflection_file_editor.py iotbx/regression/tst_reflection_file_reader.py iotbx/regression/tst_reflection_file_utils.py iotbx/regression/tst_reflection_statistics.py iotbx/regression/tst_reindex.py iotbx/regression/tst_restraints_merge.py iotbx/regression/tst_selected_hierarchy_flip.py iotbx/regression/tst_show_systematic_absences.py iotbx/regression/tst_simple_map_coefficients.py iotbx/regression/tst_simple_parser.py iotbx/regression/tst_sort_atoms.py iotbx/regression/tst_split_data_cif.py iotbx/regression/tst_split_models.py iotbx/regression/tst_symmetry.py iotbx/regression/tst_text_detection.py iotbx/regression/tst_wildcard.py iotbx/regression/tst_xray_scale.py iotbx/regression/ncs/ iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py iotbx/regression/ncs/tst_ncs.py iotbx/regression/ncs/tst_ncs_groups_preprocessing.py iotbx/regression/ncs/tst_ncs_input.py iotbx/regression/ncs/tst_ncs_input_preserves_iseqs.py iotbx/regression/ncs/tst_ncs_reordered_chains.py iotbx/regression/ncs/tst_ncs_search_broken_chain.py iotbx/regression/ncs/tst_ncs_search_ligs.py iotbx/regression/ncs/tst_ncs_search_shortcut_1.py iotbx/regression/ncs/tst_ncs_user_selections.py iotbx/regression/ncs/tst_ncs_without_validation.py iotbx/regression/secondary_structure/ iotbx/regression/secondary_structure/tst_annotation.py iotbx/regression/secondary_structure/tst_annotation_long.py iotbx/regression/secondary_structure/tst_sheet.py iotbx/scalepack/ iotbx/scalepack/tst_merge.py iotbx/scalepack/tst_no_merge_original_index.py iotbx/shelx/ iotbx/shelx/tst_fvar_encoding.py iotbx/shelx/tst_hklf.py iotbx/shelx/tst_lex_parse_build.py iotbx/shelx/tst_writer.py iotbx/xds/ iotbx/xds/tests/ iotbx/xds/tests/tst_integrate_hkl.py iotbx/xds/tests/tst_spots_xds.py iotbx/xds/tests/tst_xds_inp.py iotbx/xds/tests/tst_xparm.py iotbx/xplor/ iotbx/xplor/tst_xplormap.py sent 2,626,967 bytes received 3,277 bytes 5,260,488.00 bytes/sec total size is 2,614,058 speedup is 0.99 building file list ... done libtbx/tst_add_docstrings_with_ai.py libtbx/tst_binary_search.py libtbx/tst_citation_encoding.py libtbx/tst_citations.py libtbx/tst_conda_dispatcher.py libtbx/tst_containers.py libtbx/tst_dlite.py libtbx/tst_easy_mp.py libtbx/tst_easy_mp_multicore.py libtbx/tst_easy_mp_state.py libtbx/tst_easy_pickle.py libtbx/tst_find_unused_imports.py libtbx/tst_fully_buffered_timeout.py libtbx/tst_guided_coding.py libtbx/tst_mahalanobis.py libtbx/tst_math_utils.py libtbx/tst_object_oriented_patterns.py libtbx/tst_path.py libtbx/tst_program_template.py libtbx/tst_python_code_parsing.py libtbx/tst_representation.py libtbx/tst_run_tests_parallel_retry.py libtbx/tst_run_tests_parallel_unique_dirs.py libtbx/tst_runtime_utils.py libtbx/tst_scheduling.py libtbx/tst_str_utils.py libtbx/tst_t96_roster.py libtbx/tst_thread_utils.py libtbx/tst_topological_sort.py libtbx/tst_utils.py libtbx/tst_version.py libtbx/tst_word_index_generator.py libtbx/tst_xmlrpc_utils.py libtbx/guided_coding/ libtbx/guided_coding/tests/ libtbx/guided_coding/tests/tst_review_bundle_v20.py libtbx/guided_coding/tests/tst_screen_check_v20.py libtbx/jobs/ libtbx/jobs/tst_batch.py libtbx/jobs/tst_local.py libtbx/jobs/tst_manager.py libtbx/jobs/tst_slurm.py libtbx/langchain/ libtbx/langchain/agent/ libtbx/langchain/agent/tst_agent_enhancements.py libtbx/langchain/tests/ libtbx/langchain/tests/tst_abort_message_all_stops.py libtbx/langchain/tests/tst_action_item_1.py libtbx/langchain/tests/tst_advice_preprocessing.py libtbx/langchain/tests/tst_after_program_fill_from_raw.py libtbx/langchain/tests/tst_after_program_prompt.py libtbx/langchain/tests/tst_agent_build_info.py libtbx/langchain/tests/tst_analysis_request.py libtbx/langchain/tests/tst_api_schema.py libtbx/langchain/tests/tst_audit_fixes.py libtbx/langchain/tests/tst_autobuild_hl_recovery.py libtbx/langchain/tests/tst_autobuild_sequence_waiver.py libtbx/langchain/tests/tst_autosol_bugs.py libtbx/langchain/tests/tst_backward_compat.py libtbx/langchain/tests/tst_best_files_tracker.py libtbx/langchain/tests/tst_build_experiment_type_and_rfree.py libtbx/langchain/tests/tst_canary.py libtbx/langchain/tests/tst_cc_key_extraction.py libtbx/langchain/tests/tst_classify_mtz_type_001.py libtbx/langchain/tests/tst_command_builder.py libtbx/langchain/tests/tst_contract_compliance.py libtbx/langchain/tests/tst_copies_tracking.py libtbx/langchain/tests/tst_cryoem_metric_evaluator_validation.py libtbx/langchain/tests/tst_cryoem_stop_validation.py libtbx/langchain/tests/tst_data_input_filter.py libtbx/langchain/tests/tst_decision_flow.py libtbx/langchain/tests/tst_default_models.py libtbx/langchain/tests/tst_density_modify_experiment_type.py libtbx/langchain/tests/tst_dependencies.py libtbx/langchain/tests/tst_diagnosed_failure_stop.py libtbx/langchain/tests/tst_diagnostic_messages.py libtbx/langchain/tests/tst_directive_extractor.py libtbx/langchain/tests/tst_directive_extractor_behavior_regression.py libtbx/langchain/tests/tst_directive_extractor_grounding.py libtbx/langchain/tests/tst_directive_extractor_sentinel_space_group.py libtbx/langchain/tests/tst_directive_layer_diagnostics.py libtbx/langchain/tests/tst_directive_validation.py libtbx/langchain/tests/tst_directive_validator.py libtbx/langchain/tests/tst_directive_validator_typo_hints.py libtbx/langchain/tests/tst_directives_integration.py libtbx/langchain/tests/tst_display_data_model.py libtbx/langchain/tests/tst_dock_and_stop.py libtbx/langchain/tests/tst_docs_tools.py libtbx/langchain/tests/tst_dry_run.py libtbx/langchain/tests/tst_error_analyzer.py libtbx/langchain/tests/tst_error_classifier.py libtbx/langchain/tests/tst_event_formatter_file_categories.py libtbx/langchain/tests/tst_event_system.py libtbx/langchain/tests/tst_explanation_prompts.py libtbx/langchain/tests/tst_extended_stop_phrasings.py libtbx/langchain/tests/tst_extract_raw_advice.py libtbx/langchain/tests/tst_extraction_failure_visibility.py libtbx/langchain/tests/tst_fabricated_stop_condition.py libtbx/langchain/tests/tst_file_categorization.py libtbx/langchain/tests/tst_file_categorizer.py libtbx/langchain/tests/tst_file_encoding.py libtbx/langchain/tests/tst_file_utils.py libtbx/langchain/tests/tst_fix_verification.py libtbx/langchain/tests/tst_force_no_ai_server.py libtbx/langchain/tests/tst_gate_evaluator.py libtbx/langchain/tests/tst_general_resolver.py libtbx/langchain/tests/tst_grounding_stop_after_requested.py libtbx/langchain/tests/tst_h17_strip_executor.py libtbx/langchain/tests/tst_h18_1_phil_roundtrip.py libtbx/langchain/tests/tst_halfmap_sigmaa_inventory.py libtbx/langchain/tests/tst_hardcoded_cleanup.py libtbx/langchain/tests/tst_history_analysis.py libtbx/langchain/tests/tst_hypothesis_evaluator.py libtbx/langchain/tests/tst_initialize_plan_smoke.py libtbx/langchain/tests/tst_input_mtz_has_rfree_plumbing.py libtbx/langchain/tests/tst_integration.py libtbx/langchain/tests/tst_intent_classifier.py libtbx/langchain/tests/tst_langchain_tools.py libtbx/langchain/tests/tst_ligand_workflow_restart.py libtbx/langchain/tests/tst_ligandfit_patterns.py libtbx/langchain/tests/tst_llm_unavailable_notice.py libtbx/langchain/tests/tst_log_extractor.py libtbx/langchain/tests/tst_log_structure_extractor.py libtbx/langchain/tests/tst_metric_patterns.py libtbx/langchain/tests/tst_metrics_analyzer.py libtbx/langchain/tests/tst_mode_isolation.py libtbx/langchain/tests/tst_mtz_crosscheck.py libtbx/langchain/tests/tst_mtz_phases_session_blocking.py libtbx/langchain/tests/tst_n_bugs.py libtbx/langchain/tests/tst_new_programs.py libtbx/langchain/tests/tst_obs_labels_auto_fill.py libtbx/langchain/tests/tst_old_client_compat.py libtbx/langchain/tests/tst_optional_dep_resilience.py libtbx/langchain/tests/tst_pattern_manager.py libtbx/langchain/tests/tst_perceive_stop_checks.py libtbx/langchain/tests/tst_phase0_static_audit.py libtbx/langchain/tests/tst_phase1_contract_gaps.py libtbx/langchain/tests/tst_phase2_path_consistency.py libtbx/langchain/tests/tst_phase2b_activation.py libtbx/langchain/tests/tst_phase3_bug5.py libtbx/langchain/tests/tst_phase3_serialization_symmetry.py libtbx/langchain/tests/tst_phase3d_motivating_tutorial.py libtbx/langchain/tests/tst_phase4_history_flags.py libtbx/langchain/tests/tst_phase5_error_classification.py libtbx/langchain/tests/tst_phase6_category_consumer.py libtbx/langchain/tests/tst_phase7_routing_simulation.py libtbx/langchain/tests/tst_phase8_command_building.py libtbx/langchain/tests/tst_phase9_llm_perturbation.py libtbx/langchain/tests/tst_phaser_multimodel.py libtbx/langchain/tests/tst_phil_namespace_cleaner.py libtbx/langchain/tests/tst_phil_validation.py libtbx/langchain/tests/tst_placement_skip_rebuild.py libtbx/langchain/tests/tst_plan_autostop_validation_suppression.py libtbx/langchain/tests/tst_plan_catchup_failure_semantics.py libtbx/langchain/tests/tst_plan_generator.py libtbx/langchain/tests/tst_plan_lead_program_offer.py libtbx/langchain/tests/tst_plan_schema.py libtbx/langchain/tests/tst_planning_framework.py libtbx/langchain/tests/tst_portkey_embedding_model.py libtbx/langchain/tests/tst_predict_and_build_no_ncs.py libtbx/langchain/tests/tst_preprocessor_file_override.py libtbx/langchain/tests/tst_program_identity.py libtbx/langchain/tests/tst_program_registration.py libtbx/langchain/tests/tst_program_requirements.py libtbx/langchain/tests/tst_protocol_version.py libtbx/langchain/tests/tst_provider_error_classification.py libtbx/langchain/tests/tst_provider_lock.py libtbx/langchain/tests/tst_raw_advice_scanner.py libtbx/langchain/tests/tst_reactive_deviation_hold.py libtbx/langchain/tests/tst_reasoning_command_divergence.py libtbx/langchain/tests/tst_rebuild_template_selection.py libtbx/langchain/tests/tst_refine_final_rfree.py libtbx/langchain/tests/tst_report_verifier.py libtbx/langchain/tests/tst_resolve_cryo_em_ncs_inject.py libtbx/langchain/tests/tst_resume_reopen_stages.py libtbx/langchain/tests/tst_rfree_flags_missing.py libtbx/langchain/tests/tst_rfree_generate_guard.py libtbx/langchain/tests/tst_rfree_lock_reconciliation.py libtbx/langchain/tests/tst_rfree_resolution_stop.py libtbx/langchain/tests/tst_safe_float_consolidation.py libtbx/langchain/tests/tst_sanity_checker.py libtbx/langchain/tests/tst_scenario_tracer.py libtbx/langchain/tests/tst_sequence_only_routing.py libtbx/langchain/tests/tst_session_directives.py libtbx/langchain/tests/tst_session_summary.py libtbx/langchain/tests/tst_session_tools.py libtbx/langchain/tests/tst_settings_list_coercion.py libtbx/langchain/tests/tst_shared_code_imports.py libtbx/langchain/tests/tst_silent_stop_abort_messages.py libtbx/langchain/tests/tst_simple_extractor_validation.py libtbx/langchain/tests/tst_skip_promotion.py libtbx/langchain/tests/tst_skip_to_program.py libtbx/langchain/tests/tst_solve_action_keywords.py libtbx/langchain/tests/tst_space_group_validation.py libtbx/langchain/tests/tst_spurious_stop_after_requested.py libtbx/langchain/tests/tst_standalone_consistency.py libtbx/langchain/tests/tst_state_serialization.py libtbx/langchain/tests/tst_step1f_single_emit.py libtbx/langchain/tests/tst_stop_condition_false_positive.py libtbx/langchain/tests/tst_stop_condition_fix.py libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py libtbx/langchain/tests/tst_stop_reason_codes.py libtbx/langchain/tests/tst_stop_reason_prompt.py libtbx/langchain/tests/tst_strategy_memory.py libtbx/langchain/tests/tst_structure_model.py libtbx/langchain/tests/tst_summary_display.py libtbx/langchain/tests/tst_summary_file.py libtbx/langchain/tests/tst_supported_providers_single_source.py libtbx/langchain/tests/tst_template.py libtbx/langchain/tests/tst_thinking_agent.py libtbx/langchain/tests/tst_thinking_defense.py libtbx/langchain/tests/tst_transport.py libtbx/langchain/tests/tst_transport_surfaces.py libtbx/langchain/tests/tst_user_advice_filter.py libtbx/langchain/tests/tst_utils.py libtbx/langchain/tests/tst_v112_13_fixes.py libtbx/langchain/tests/tst_v120_providers.py libtbx/langchain/tests/tst_validate_file_overrides.py libtbx/langchain/tests/tst_validate_step_after_program_guard.py libtbx/langchain/tests/tst_validation_history.py libtbx/langchain/tests/tst_workflow_complete_stop.py libtbx/langchain/tests/tst_workflow_state.py libtbx/langchain/tests/tst_yaml_config.py libtbx/langchain/tests/tst_yaml_tools.py libtbx/langchain/tests/llm/ libtbx/langchain/tests/llm/tst_a1_extractor_smoke.py libtbx/langchain/tests/llm/tst_b1_stop_after_requested.py libtbx/langchain/tests/llm/tst_b2_gated_wipe_planning.py libtbx/langchain/tests/llm/tst_c1_raw_authority.py libtbx/langchain/tests/llm/tst_directive_extraction.py libtbx/langchain/tests/llm/tst_framework_self.py libtbx/langchain/tests/llm/tst_planning.py libtbx/phil/ libtbx/phil/tst.py libtbx/phil/tst_experimental.py libtbx/phil/tst_interface.py libtbx/phil/tst_tokenizer.py libtbx/queuing_system_utils/ libtbx/queuing_system_utils/tst.py sent 4,455,406 bytes received 4,413 bytes 8,919,638.00 bytes/sec total size is 4,436,722 speedup is 0.99 building file list ... done mmtbx/atomic_environment_vectors/ mmtbx/atomic_environment_vectors/tst.py mmtbx/building/ mmtbx/building/tst_extend_sidechains.py mmtbx/building/tst_extend_sidechains_2.py mmtbx/building/ligands/ mmtbx/building/ligands/tst_00.py mmtbx/building/ligands/tst_00_mmtbx_building_ligands.map mmtbx/bulk_solvent/ mmtbx/bulk_solvent/tst_aniso_scaler.py mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py mmtbx/bulk_solvent/tst_flat_nonuniform.py mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py mmtbx/bulk_solvent/tst_mosaic.py mmtbx/bulk_solvent/tst_scaler.py mmtbx/chemical_components/ mmtbx/chemical_components/tst.py mmtbx/conformation_dependent_library/ mmtbx/conformation_dependent_library/tst_cdl.py mmtbx/conformation_dependent_library/tst_cdl_esd.py mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py mmtbx/conformation_dependent_library/tst_enol_peptide.py mmtbx/conformation_dependent_library/tst_hpdl.py mmtbx/conformation_dependent_library/tst_mcl_01.py mmtbx/conformation_dependent_library/tst_mcl_02.py mmtbx/conformation_dependent_library/tst_mcl_03.py mmtbx/conformation_dependent_library/tst_multi_residue_rna.py mmtbx/conformation_dependent_library/tst_mutli_residue.py mmtbx/conformation_dependent_library/tst_omega_cdl.py mmtbx/conformation_dependent_library/tst_pH_mechanism.py mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py mmtbx/conformation_dependent_library/tst_rdl.py mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py mmtbx/density_modification/ mmtbx/density_modification/tst_density_modification.py mmtbx/disorder/ mmtbx/disorder/tst.py mmtbx/disorder/tst_analyze_model.py mmtbx/disorder/tst_backbone.py mmtbx/dynamics/ mmtbx/dynamics/tst_cartesian_dynamics.py mmtbx/dynamics/tst_sa.py mmtbx/geometry/ mmtbx/geometry/tests/ mmtbx/geometry/tests/tst_altloc.py mmtbx/geometry/tests/tst_asa.py mmtbx/geometry/tests/tst_clash.py mmtbx/geometry/tests/tst_indexing.py mmtbx/geometry/tests/tst_shared_types.py mmtbx/geometry/tests/tst_sphere_surface_sampling.py mmtbx/geometry/tests/tst_topology.py mmtbx/geometry_restraints/ mmtbx/geometry_restraints/tst_c_beta_restraints.py mmtbx/geometry_restraints/tst_geo_file_parsing.py mmtbx/geometry_restraints/tst_manager.py mmtbx/geometry_restraints/tst_orca_manager.py mmtbx/geometry_restraints/tst_ramachandran.py mmtbx/geometry_restraints/tst_reference_coordinate.py mmtbx/geometry_restraints/tst_reference_coordinate2.py mmtbx/geometry_restraints/tst_replace_in_place.py mmtbx/geometry_restraints/tst_xtb_manager.py mmtbx/geometry_restraints/torsion_restraints/ mmtbx/geometry_restraints/torsion_restraints/tst_reference_hbond.py mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py mmtbx/geometry_restraints/torsion_restraints/tst_reference_ramachandran.py mmtbx/geometry_restraints/torsion_restraints/tst_ter_records.py mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py mmtbx/hydrogens/ mmtbx/hydrogens/tst.py mmtbx/hydrogens/tst_add_hydrogen.py mmtbx/hydrogens/tst_add_hydrogen_1.py mmtbx/hydrogens/tst_add_hydrogen_10.py mmtbx/hydrogens/tst_add_hydrogen_11.py mmtbx/hydrogens/tst_add_hydrogen_12.py mmtbx/hydrogens/tst_add_hydrogen_13.py mmtbx/hydrogens/tst_add_hydrogen_14.py mmtbx/hydrogens/tst_add_hydrogen_15.py mmtbx/hydrogens/tst_add_hydrogen_16.py mmtbx/hydrogens/tst_add_hydrogen_2.py mmtbx/hydrogens/tst_add_hydrogen_3.py mmtbx/hydrogens/tst_add_hydrogen_4.py mmtbx/hydrogens/tst_add_hydrogen_5.py mmtbx/hydrogens/tst_add_hydrogen_6.py mmtbx/hydrogens/tst_add_hydrogen_7.py mmtbx/hydrogens/tst_add_hydrogen_8.py mmtbx/hydrogens/tst_add_hydrogen_9.py mmtbx/hydrogens/tst_add_hydrogen_time.py mmtbx/hydrogens/tst_connectivity.py mmtbx/hydrogens/tst_const_dihedral.py mmtbx/hydrogens/tst_parameterization_1.py mmtbx/hydrogens/tst_parameterization_2.py mmtbx/hydrogens/tst_parameterization_3.py mmtbx/hydrogens/tst_parameterization_4.py mmtbx/hydrogens/tst_parameterization_5.py mmtbx/hydrogens/tst_parameterization_6.py mmtbx/hydrogens/tst_parameterization_7.py mmtbx/hydrogens/tst_parameterization_8.py mmtbx/hydrogens/tst_parameterization_9.py mmtbx/hydrogens/tst_riding_coefficients.py mmtbx/hydrogens/tst_riding_fd_1.py mmtbx/hydrogens/tst_riding_fd_2.py mmtbx/hydrogens/tst_riding_fd_3.py mmtbx/hydrogens/tst_riding_fd_4.py mmtbx/hydrogens/tst_riding_fd_5.py mmtbx/hydrogens/tst_riding_manager.py mmtbx/hydrogens/tst_riding_minimize.py mmtbx/hydrogens/tst_validate_H.py mmtbx/ias/ mmtbx/ias/tst_ias.py mmtbx/idealized_aa_residues/ mmtbx/idealized_aa_residues/tst.py mmtbx/ions/ mmtbx/ions/tst_environment.py mmtbx/ions/tst_geometries.py mmtbx/ions/tst_parameters.py mmtbx/ions/tst_pick_approx_zn.py mmtbx/ions/tst_pick_ca.py mmtbx/ions/tst_pick_ca_svm.py mmtbx/ions/tst_pick_k.py mmtbx/ions/tst_pick_mg.py mmtbx/ions/tst_pickle.py mmtbx/ions/tst_symmetry_axis.py mmtbx/ions/tst_utils.py mmtbx/ions/tst_validate_ca.py mmtbx/ions/tst_validate_mg.py mmtbx/ions/svm/ mmtbx/ions/svm/tst_classifier_01.py mmtbx/ions/svm/tst_classifier_02.py mmtbx/kinemage/ mmtbx/kinemage/tst_validation.py mmtbx/ligands/ mmtbx/ligands/tst_electron_scripting.py mmtbx/ligands/tst_ready_set_utils.py mmtbx/ligands/tst_xtal_screens.py mmtbx/maps/ mmtbx/maps/tst_composite_omit_map.py mmtbx/maps/tst_composite_omit_map_2.py mmtbx/maps/tst_composite_omit_map_3.py mmtbx/maps/tst_correlation.py mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py mmtbx/masks/ mmtbx/masks/tst_asu_mask.py mmtbx/masks/tst_mask.cpp mmtbx/masks/tst_masks.py mmtbx/max_lik/ mmtbx/max_lik/tst_max_lik.py mmtbx/max_lik/tst_maxlik.py mmtbx/monomer_library/ mmtbx/monomer_library/tst_all_cif_files.py mmtbx/monomer_library/tst_carbo_linking.py mmtbx/monomer_library/tst_chg.py mmtbx/monomer_library/tst_cif_triage.py mmtbx/monomer_library/tst_cif_types.py mmtbx/monomer_library/tst_correct_hydrogens.py mmtbx/monomer_library/tst_deuterium_terminii.py mmtbx/monomer_library/tst_geo_reduce_for_tardy.py mmtbx/monomer_library/tst_glyco_coordination.py mmtbx/monomer_library/tst_glyco_hand.py mmtbx/monomer_library/tst_idealized_aa.py mmtbx/monomer_library/tst_iron_sulfur_clusters.py mmtbx/monomer_library/tst_linking.py mmtbx/monomer_library/tst_metal_coordination.py mmtbx/monomer_library/tst_motif.py mmtbx/monomer_library/tst_neutron_distance.py mmtbx/monomer_library/tst_paral_geo.py mmtbx/monomer_library/tst_pdb_interpretation.py mmtbx/monomer_library/tst_pdb_interpretation_2.py mmtbx/monomer_library/tst_pdb_interpretation_3.py mmtbx/monomer_library/tst_pdb_interpretation_4.py mmtbx/monomer_library/tst_pdb_interpretation_5.py mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py mmtbx/monomer_library/tst_protein_interpretation.py mmtbx/monomer_library/tst_rna_dna_interpretation.py mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py mmtbx/monomer_library/tst_rotamer_utils.py mmtbx/monomer_library/tst_selection.py mmtbx/monomer_library/tst_server.py mmtbx/monomer_library/tst_superpose_ideal.py mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py mmtbx/monomer_library/tst_user_supplied_library.py mmtbx/nci/ mmtbx/nci/tst_hbond.py mmtbx/pair_interaction/ mmtbx/pair_interaction/tst_00.py mmtbx/pair_interaction/tst_01.py mmtbx/pair_interaction/tst_02.py mmtbx/pair_interaction/tst_03.py mmtbx/pair_interaction/tst_04.py mmtbx/pair_interaction/tst_05.py mmtbx/polygon/ mmtbx/polygon/tst.py mmtbx/polygon/tst_gui.py mmtbx/polygon/tst_polygon_data.py mmtbx/probe/ mmtbx/probe/tst_mmtbx_probe_ext.py mmtbx/probe/tst_probe.cpp mmtbx/real_space/ mmtbx/real_space/tst.py mmtbx/reduce/ mmtbx/reduce/tst_mmtbx_reduce_ext.py mmtbx/refinement/ mmtbx/refinement/tst_anomalous_scatterer_groups.py mmtbx/refinement/tst_fit_rotamers.py mmtbx/refinement/tst_group.py mmtbx/refinement/tst_group_2.py mmtbx/refinement/tst_misc.py mmtbx/refinement/tst_occupancy_selections.py mmtbx/refinement/tst_real_space_simple.py mmtbx/refinement/tst_refinement_flags.py mmtbx/refinement/tst_rigid_body.py mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py mmtbx/refinement/tst_select_best_starting_model.py mmtbx/refinement/real_space/ mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py mmtbx/refinement/real_space/tst_fit_residue_0.py mmtbx/refinement/real_space/tst_fit_residue_0H.py mmtbx/refinement/real_space/tst_fit_residue_1.py mmtbx/refinement/real_space/tst_fit_residue_1H.py mmtbx/refinement/real_space/tst_fit_residue_2.py mmtbx/refinement/real_space/tst_fit_residue_3.py mmtbx/refinement/real_space/tst_fit_residue_4.py mmtbx/refinement/real_space/tst_fit_residue_5.py mmtbx/refinement/real_space/tst_fit_residue_6.py mmtbx/refinement/real_space/tst_fit_residue_7.py mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py mmtbx/refinement/real_space/tst_fit_residues_1.py mmtbx/refinement/real_space/tst_fit_residues_1H.py mmtbx/refinement/real_space/tst_fit_residues_2.py mmtbx/refinement/real_space/tst_fit_residues_3.py mmtbx/refinement/real_space/tst_fit_residues_4.py mmtbx/refinement/real_space/tst_fit_residues_5.py mmtbx/refinement/real_space/tst_fit_residues_6.py mmtbx/refinement/real_space/tst_fit_residues_selection.py mmtbx/refinement/real_space/tst_fit_water.py mmtbx/refinement/real_space/tst_individual_sites_1.py mmtbx/refinement/real_space/tst_individual_sites_2.py mmtbx/refinement/real_space/tst_individual_sites_3.py mmtbx/refinement/real_space/tst_monitor.py mmtbx/refinement/real_space/tst_rigid_body.py mmtbx/refinement/real_space/tst_weight.py mmtbx/regression/tst_add_arrows_on_plot.py mmtbx/regression/tst_add_h_to_water.py mmtbx/regression/tst_adp_restraints.py mmtbx/regression/tst_alignment.py mmtbx/regression/tst_altloc_chain_break.py mmtbx/regression/tst_altloc_remediate.py mmtbx/regression/tst_angle.py mmtbx/regression/tst_anomalous_substructure.py mmtbx/regression/tst_apply_cif_restraints.py mmtbx/regression/tst_arginine_geometry.py mmtbx/regression/tst_cc_star.py mmtbx/regression/tst_chain_comparison.py mmtbx/regression/tst_chain_comparison_cif.py mmtbx/regression/tst_cif_as_mtz_wavelengths.py mmtbx/regression/tst_cis_trans_peptide_link.py mmtbx/regression/tst_clashes.py mmtbx/regression/tst_command_line_input.py mmtbx/regression/tst_domains_from_pae.py mmtbx/regression/tst_domains_from_pae_cif.py mmtbx/regression/tst_dynamics_cli.py mmtbx/regression/tst_examples.py mmtbx/regression/tst_find_ncs.py mmtbx/regression/tst_find_ss_structure.py mmtbx/regression/tst_find_ss_structure_cif.py mmtbx/regression/tst_flipping_his.py mmtbx/regression/tst_fmodel.py mmtbx/regression/tst_fmodel_2.py mmtbx/regression/tst_fmodel_and_dm.py mmtbx/regression/tst_fmodel_fd.py mmtbx/regression/tst_fmodel_misc.py mmtbx/regression/tst_fmodel_no_cryst1.py mmtbx/regression/tst_geo_min_restraints_phil.py mmtbx/regression/tst_geometry_minimization.py mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py mmtbx/regression/tst_holton_geometry_validation.py mmtbx/regression/tst_isomorphous_difference_misc.py mmtbx/regression/tst_ligand_interactions.py mmtbx/regression/tst_ligand_ncs.py mmtbx/regression/tst_loop_closure.py mmtbx/regression/tst_lrv.py mmtbx/regression/tst_map_model_cc.py mmtbx/regression/tst_map_type_parser.py mmtbx/regression/tst_maps_misc.py mmtbx/regression/tst_metal_link_1.py mmtbx/regression/tst_minimize_chain.py mmtbx/regression/tst_ml_estimate.py mmtbx/regression/tst_mmtbx_refinement_wrappers.py mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py mmtbx/regression/tst_model_map.py mmtbx/regression/tst_model_vs_map.py mmtbx/regression/tst_model_vs_sequence.py mmtbx/regression/tst_models_to_from_chains.py mmtbx/regression/tst_msa.py mmtbx/regression/tst_mtz2map.py mmtbx/regression/tst_multi_residue_class.py mmtbx/regression/tst_ordered_solvent.py mmtbx/regression/tst_origin_ids.py mmtbx/regression/tst_pdbtools.py mmtbx/regression/tst_polder.py mmtbx/regression/tst_polder_1.py mmtbx/regression/tst_polder_2.py mmtbx/regression/tst_polder_3.py mmtbx/regression/tst_polder_4.py mmtbx/regression/tst_polder_box.py mmtbx/regression/tst_polder_ccs.py mmtbx/regression/tst_probe.py mmtbx/regression/tst_process_predicted_model.py mmtbx/regression/tst_process_predicted_model_cif.py mmtbx/regression/tst_prune_model.py mmtbx/regression/tst_psi_phi_extraction.py mmtbx/regression/tst_rank_scale_map.py mmtbx/regression/tst_rdkit_utils_fragmentation.py mmtbx/regression/tst_rdkit_utils_molecule.py mmtbx/regression/tst_real_space_correlation.py mmtbx/regression/tst_reduce.py mmtbx/regression/tst_reduce2_no_symmetry.py mmtbx/regression/tst_reduce_cryoem_resolution.py mmtbx/regression/tst_reduce_custom_bond.py mmtbx/regression/tst_reduce_switch.py mmtbx/regression/tst_reduce_timeout.py mmtbx/regression/tst_refine_anomalous_substructure.py mmtbx/regression/tst_regularize_from_pdb.py mmtbx/regression/tst_regularize_from_pdb_cif.py mmtbx/regression/tst_ribbons.py mmtbx/regression/tst_rigid_bond_test.py mmtbx/regression/tst_ringer.py mmtbx/regression/tst_sampled_model_density.py mmtbx/regression/tst_scattering_table.py mmtbx/regression/tst_scattering_type_registry.py mmtbx/regression/tst_schrodinger_interface.py mmtbx/regression/tst_sequence_validation.py mmtbx/regression/tst_sort_hetatms.py mmtbx/regression/tst_special_term_at_end.py mmtbx/regression/tst_ss_validation_long_chainids.py mmtbx/regression/tst_statistics_output.py mmtbx/regression/tst_superpose.py mmtbx/regression/tst_table_one.py mmtbx/regression/tst_utils.py mmtbx/regression/tst_validate_ligands.py mmtbx/regression/tst_validate_ligands_2.py mmtbx/regression/tst_validate_ligands_3.py mmtbx/regression/tst_validate_ligands_4.py mmtbx/regression/tst_validation_summary.py mmtbx/regression/discamb/ mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_1.py mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_2.py mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_3.py mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_4.py mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_5.py mmtbx/regression/discamb/tst_IAM_gradients_1.py mmtbx/regression/discamb/tst_fmodel_fd_discamb.py mmtbx/regression/discamb/tst_fmodel_fd_discamb_taam.py mmtbx/regression/discamb/tst_fmodel_fd_discamb_taam_tyr.py mmtbx/regression/discamb/tst_olex2_vs_pydiscamb_TAAM_1.py mmtbx/regression/discamb/tst_olex2_vs_pydiscamb_TAAM_2.py mmtbx/regression/fix_cablam/ mmtbx/regression/fix_cablam/tst_basic_cl_operations.py mmtbx/regression/fix_cablam/tst_insertion_codes.py mmtbx/regression/fix_cablam/tst_one_resid_rotation.py mmtbx/regression/fix_cablam/tst_single_outliers_surroundings.py mmtbx/regression/model/ mmtbx/regression/model/tst_model.py mmtbx/regression/model/tst_model_2.py mmtbx/regression/model/tst_model_biomt_mtrix.py mmtbx/regression/model/tst_model_biomt_mtrix_2.py mmtbx/regression/model/tst_model_cart_ref_restraints.py mmtbx/regression/model/tst_model_dedeuterate.py mmtbx/regression/model/tst_model_get_vdw_radii.py mmtbx/regression/model/tst_model_merge.py mmtbx/regression/model/tst_model_mtrix.py mmtbx/regression/model/tst_model_ncs.py mmtbx/regression/model/tst_model_neutralize_scatterers.py mmtbx/regression/model/tst_model_pairs_within.py mmtbx/regression/model/tst_model_ramachandran.py mmtbx/regression/model/tst_model_remove_alternative_conformations.py mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py mmtbx/regression/model/tst_model_symmetry.py mmtbx/regression/model/tst_model_tors_ref_restraints.py mmtbx/regression/model/tst_model_utils_merge_models.py mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py mmtbx/regression/model_idealization/ mmtbx/regression/model_idealization/tst_ext_map_01.py mmtbx/regression/model_idealization/tst_ligands.py mmtbx/regression/model_idealization/tst_nomap_01.py mmtbx/regression/model_idealization/tst_nomap_02.py mmtbx/regression/model_idealization/tst_nomap_03.py mmtbx/regression/model_idealization/tst_nomap_04.py mmtbx/regression/model_idealization/tst_with_mtz.py mmtbx/regression/model_idealization/tst_withmap_01.py mmtbx/regression/model_idealization/tst_withmap_02.py mmtbx/regression/model_idealization/tst_withmap_03.py mmtbx/regression/model_idealization/tst_withmap_04.py mmtbx/regression/model_idealization/tst_withmap_05.py mmtbx/regression/model_idealization/tst_withmap_06.py mmtbx/regression/mtz/ mmtbx/regression/mtz/tst_xtriage_fmodel.mtz mmtbx/regression/ncs/ mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py mmtbx/regression/ncs/tst_minimization_ncs_constraints.py mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py mmtbx/regression/ncs/tst_ncs_restraints_group_list.py mmtbx/regression/ncs/tst_ncs_search.py mmtbx/regression/ncs/tst_ncs_search_flips.py mmtbx/regression/ncs/tst_ncs_utils.py mmtbx/regression/ncs/tst_restraints.py mmtbx/regression/pdb_interpretation/ mmtbx/regression/pdb_interpretation/tst_custom_nb_sym_excl.py mmtbx/regression/pdb_interpretation/tst_edits.py mmtbx/regression/pdb_interpretation/tst_edits_actions.py mmtbx/regression/pdb_interpretation/tst_tardy_geo.py mmtbx/regression/pdb_interpretation/tst_using_ncs_1.py mmtbx/regression/pdb_interpretation/tst_using_ncs_2.py mmtbx/regression/real_space_refine_chain/ mmtbx/regression/real_space_refine_chain/tst_00.py mmtbx/regression/real_space_refine_chain/tst_01.py mmtbx/regression/tls/ mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py mmtbx/regression/tls/tst_get_t_scheme.py mmtbx/regression/tls/tst_tls.py mmtbx/regression/tls/tst_tls_analysis.py mmtbx/regression/tls/tst_tls_as_xyz.py mmtbx/regression/tls/tst_tls_optimise_amplitudes.py mmtbx/regression/tls/tst_tls_refinement_fft.py mmtbx/regression/tls/tst_tls_utils.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py mmtbx/regression/tncs/ mmtbx/regression/tncs/tst_epsfac_and_radius.py mmtbx/regression/tncs/tst_fd.py mmtbx/regression/tncs/tst_moments.py mmtbx/regression/tncs/tst_pair.py mmtbx/ringer/ mmtbx/ringer/tst_em_rscc.py mmtbx/ringer/tst_emringer.py mmtbx/rotamer/ mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py mmtbx/rotamer/tst_rotamer_eval.py mmtbx/rsr/ mmtbx/rsr/tst.py mmtbx/scaling/ mmtbx/scaling/tst_absences.py mmtbx/scaling/tst_bayesian_estimator.py mmtbx/scaling/tst_massage_data.py mmtbx/scaling/tst_mean_f_rms_f.py mmtbx/scaling/tst_outlier.py mmtbx/scaling/tst_plan_sad_experiment.py mmtbx/scaling/tst_scaling.py mmtbx/scaling/tst_sigmaa.py mmtbx/scaling/tst_xtriage.py mmtbx/scaling/tst_xtriage_twin_analyses.py mmtbx/secondary_structure/ mmtbx/secondary_structure/tst.py mmtbx/secondary_structure/tst_insertion_codes.py mmtbx/secondary_structure/tst_segid.py mmtbx/secondary_structure/build/ mmtbx/secondary_structure/build/tst_1.py mmtbx/secondary_structure/build/tst_2.py mmtbx/secondary_structure/build/tst_3.py mmtbx/secondary_structure/build/tst_io.py mmtbx/secondary_structure/build/tst_ss_id_ncs.py mmtbx/utils/ mmtbx/utils/tst_switch_rotamers.py mmtbx/validation/ mmtbx/validation/regression/ mmtbx/validation/regression/tst_barbed_wire_analysis.py mmtbx/validation/regression/tst_cablam.py mmtbx/validation/regression/tst_cablam_2.py mmtbx/validation/regression/tst_cbetadev.py mmtbx/validation/regression/tst_cbetadev_02.py mmtbx/validation/regression/tst_chiral_validation.py mmtbx/validation/regression/tst_clashscore.py mmtbx/validation/regression/tst_clashscore_2.py mmtbx/validation/regression/tst_do_flips_clashscore.py mmtbx/validation/regression/tst_experimental.py mmtbx/validation/regression/tst_find_region_max_value.py mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py mmtbx/validation/regression/tst_keep_hydrogens.py mmtbx/validation/regression/tst_model_properties.py mmtbx/validation/regression/tst_molprobity_1.py mmtbx/validation/regression/tst_molprobity_2.py mmtbx/validation/regression/tst_molprobity_3.py mmtbx/validation/regression/tst_molprobity_4.py mmtbx/validation/regression/tst_molprobity_5.py mmtbx/validation/regression/tst_molprobity_arguments.py mmtbx/validation/regression/tst_mp_geo.py mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py mmtbx/validation/regression/tst_mp_geo_endtoend.py mmtbx/validation/regression/tst_mp_validate_bonds.py mmtbx/validation/regression/tst_omegalyze.py mmtbx/validation/regression/tst_probe2_asu_bond_proxies.py mmtbx/validation/regression/tst_rama_z_01.py mmtbx/validation/regression/tst_rama_z_02.py mmtbx/validation/regression/tst_ramalyze.py mmtbx/validation/regression/tst_ramalyze2.py mmtbx/validation/regression/tst_ramalyze_rare.py mmtbx/validation/regression/tst_restraints.py mmtbx/validation/regression/tst_rna_validate.py mmtbx/validation/regression/tst_rotalyze.py mmtbx/validation/regression/tst_suitename.py mmtbx/validation/regression/tst_symmetry_SS.py mmtbx/validation/regression/tst_undowser.py mmtbx/validation/regression/tst_undowser2.py mmtbx/validation/regression/tst_utils.py mmtbx/validation/regression/tst_waters.py mmtbx/wwpdb/ mmtbx/wwpdb/tst_rcsb_entry_request.py mmtbx/wwpdb/tst_rcsb_web_services.py sent 8,587,880 bytes received 9,011 bytes 5,731,260.67 bytes/sec total size is 8,553,978 speedup is 1.00 building file list ... done omptbx/ omptbx/tst.py sent 1,313 bytes received 38 bytes 2,702.00 bytes/sec total size is 1,175 speedup is 0.87 building file list ... done rstbx/bpcx/ rstbx/bpcx/detector_model/ rstbx/bpcx/detector_model/tst_detector_model.py rstbx/cftbx/ rstbx/cftbx/tst_coordinate_frame_converter.py rstbx/diffraction/ rstbx/diffraction/tst_ewald_sphere.py rstbx/diffraction/tst_partial_derivatives.py rstbx/diffraction/tst_predict.py rstbx/diffraction/fastbragg/ rstbx/diffraction/fastbragg/tst_bragg_minimal.py rstbx/diffraction/fastbragg/tst_utils_clustering.py rstbx/dps_core/ rstbx/dps_core/tst_iotbx_converter.py rstbx/indexing/ rstbx/indexing/tst_auto_monoscan.py rstbx/indexing/tst_dataset1.py rstbx/simage/ rstbx/simage/tst.py rstbx/simulation/ rstbx/simulation/tst_xfel1_simple.py rstbx/sublattice_support/ rstbx/sublattice_support/tst_sublattice.py rstbx/viewer/ rstbx/viewer/tst.py sent 181,050 bytes received 311 bytes 362,722.00 bytes/sec total size is 179,407 speedup is 0.99 building file list ... done scitbx/array_family/ scitbx/array_family/tst_accessors.cpp scitbx/array_family/tst_af_1.cpp scitbx/array_family/tst_af_2.cpp scitbx/array_family/tst_af_3.cpp scitbx/array_family/tst_af_4.cpp scitbx/array_family/tst_af_5.cpp scitbx/array_family/tst_af_helpers.cpp scitbx/array_family/tst_mat3.cpp scitbx/array_family/tst_optional_copy.cpp scitbx/array_family/tst_rectangular_full_packed.cpp scitbx/array_family/tst_ref_matrix_facet.cpp scitbx/array_family/tst_sym_mat3.cpp scitbx/array_family/tst_unsigned_float_arithmetic.cpp scitbx/array_family/tst_vec3.cpp scitbx/array_family/boost_python/ scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py scitbx/array_family/boost_python/tst_flex.py scitbx/array_family/boost_python/tst_flex_argument_passing.py scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py scitbx/array_family/boost_python/tst_numpy_bridge.py scitbx/array_family/boost_python/tst_numpy_scalar_conversions.py scitbx/array_family/boost_python/tst_shared.py scitbx/array_family/boost_python/tst_smart_selection.py scitbx/dtmin/ scitbx/dtmin/regression/ scitbx/dtmin/regression/tst_dtmin_basic.py scitbx/dtmin/regression/tst_dtmin_booth.py scitbx/dtmin/regression/tst_dtmin_twisted.py scitbx/error/ scitbx/error/tst_error.cpp scitbx/error/tst_error.py scitbx/fftpack/ scitbx/fftpack/boost_python/ scitbx/fftpack/boost_python/tst_fftpack.py scitbx/fftpack/timing/ scitbx/fftpack/timing/tst3d.cpp scitbx/glmtbx/ scitbx/glmtbx/tests/ scitbx/glmtbx/tests/tst.py scitbx/graph/ scitbx/graph/tst_rigidity.py scitbx/graph/tst_tardy_tree.py scitbx/graph/tst_tardy_tree_find_paths.py scitbx/graph/tst_utils.py scitbx/graphics_utils/ scitbx/graphics_utils/tst.py scitbx/iso_surface/ scitbx/iso_surface/tst_iso_surface.m scitbx/iso_surface/tst_iso_surface.py scitbx/lbfgs/ scitbx/lbfgs/tst_curvatures.py scitbx/lbfgs/tst_ext.py scitbx/lbfgs/tst_func_free_line_search.py scitbx/lbfgs/tst_lbfgs.cpp scitbx/lbfgs/tst_lbfgs_fem.py scitbx/lbfgs/tst_mpi_split_evaluator.py scitbx/lbfgsb/ scitbx/lbfgsb/boost_python/ scitbx/lbfgsb/boost_python/tst_fit_cdf.py scitbx/lbfgsb/boost_python/tst_lbfgsb.py scitbx/linalg/ scitbx/linalg/tests/ scitbx/linalg/tests/tst_cholesky.py scitbx/linalg/tests/tst_eigensystem.py scitbx/linalg/tests/tst_lapack_dsyev.py scitbx/linalg/tests/tst_lapack_svd.py scitbx/linalg/tests/tst_matrix.py scitbx/linalg/tests/tst_svd.py scitbx/lstbx/ scitbx/lstbx/tests/ scitbx/lstbx/tests/tst_normal_equations.nb scitbx/lstbx/tests/tst_normal_equations.py scitbx/math/ scitbx/math/tst_2d_zernike.py scitbx/math/tst_bessel_zeros.py scitbx/math/tst_multivariate_moments.py scitbx/math/tst_so3_lie_algebra.py scitbx/math/tst_undirected_graph.py scitbx/math/tst_zernike.py scitbx/math/tst_zernike_mom.py scitbx/math/tests/ scitbx/math/tests/tst.cpp scitbx/math/tests/tst_angle_derivative.py scitbx/math/tests/tst_bessel.py scitbx/math/tests/tst_clustering.py scitbx/math/tests/tst_cubic_equation.py scitbx/math/tests/tst_curve_fitting.py scitbx/math/tests/tst_dmatrix.py scitbx/math/tests/tst_error_propagation_matrix_inverse.py scitbx/math/tests/tst_euler_angles.py scitbx/math/tests/tst_exp_functions.py scitbx/math/tests/tst_fit_peak.py scitbx/math/tests/tst_fit_quadratic_function.py scitbx/math/tests/tst_g_function.py scitbx/math/tests/tst_gaussian.py scitbx/math/tests/tst_gaussian_fit_1d_analytical.py scitbx/math/tests/tst_gcd.py scitbx/math/tests/tst_halton.py scitbx/math/tests/tst_line_search.py scitbx/math/tests/tst_math.py scitbx/math/tests/tst_minimum_covering_ellipsoid.py scitbx/math/tests/tst_orthonormal_basis.py scitbx/math/tests/tst_periodogram.py scitbx/math/tests/tst_quadrature.py scitbx/math/tests/tst_r3_rotation.py scitbx/math/tests/tst_resample.py scitbx/math/tests/tst_similarity_indices.py scitbx/math/tests/tst_superpose.py scitbx/math/tests/tst_tetrahedron.py scitbx/math/tests/tst_uniform_rotation_matrix.py scitbx/math/tests/tst_weighted_correlation.py scitbx/matrix/ scitbx/matrix/tests/ scitbx/matrix/tests/tst_cholesky.cpp scitbx/matrix/tests/tst_givens.cpp scitbx/matrix/tests/tst_householder.cpp scitbx/matrix/tests/tst_householder.nb scitbx/matrix/tests/tst_householder.py scitbx/matrix/tests/tst_row_echelon.py scitbx/matrix/tests/tst_svd.cpp scitbx/matrix/tests/tst_svd.nb scitbx/matrix/tests/tst_svd_accuracy.nb scitbx/minpack/ scitbx/minpack/tst.py scitbx/python_utils/ scitbx/python_utils/tst_graph.py scitbx/python_utils/tst_random_transform.py scitbx/python_utils/tst_robust.py scitbx/random/ scitbx/random/tests/ scitbx/random/tests/tst_random.py scitbx/rigid_body/ scitbx/rigid_body/tst.py scitbx/rigid_body/essence/ scitbx/rigid_body/essence/tst_basic.py scitbx/rigid_body/essence/tst_energy_plots.py scitbx/rigid_body/essence/tst_tardy.py scitbx/rigid_body/proto/ scitbx/rigid_body/proto/tst_featherstone.py scitbx/rigid_body/proto/tst_free_motion.py scitbx/rigid_body/proto/tst_free_motion_hard.py scitbx/rigid_body/proto/tst_joint_lib.py scitbx/rigid_body/proto/tst_molecules.py scitbx/rigid_body/proto/tst_singular.py scitbx/rigid_body/proto/tst_spherical_refinement.py scitbx/serialization/ scitbx/serialization/tst_base_256.cpp scitbx/sparse/ scitbx/sparse/tests/ scitbx/sparse/tests/tst_lu_factorization.py scitbx/sparse/tests/tst_sparse.cpp scitbx/sparse/tests/tst_sparse.py scitbx/stl/ scitbx/stl/tst_map.py scitbx/stl/tst_set.py scitbx/stl/tst_vector.py scitbx/suffixtree/ scitbx/suffixtree/test/ scitbx/suffixtree/test/tst_single.py scitbx/tests/ scitbx/tests/tst_basic.csh scitbx/tests/tst_basic.py scitbx/tests/tst_cubicle_neighbors.py scitbx/tests/tst_genetic_algorithm_with_mp.py scitbx/tests/tst_minimizer_lbfgs_general.py scitbx/tests/tst_r3_utils.py scitbx/tests/tst_regular_grid_on_unit_sphere.py scitbx/tests/tst_smoothing.py scitbx/wigner/ scitbx/wigner/tst_wigner3j.py sent 1,128,914 bytes received 2,641 bytes 2,263,110.00 bytes/sec total size is 1,118,489 speedup is 0.99 building file list ... done sent 154 bytes received 12 bytes 332.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done smtbx/ab_initio/ smtbx/ab_initio/tests/ smtbx/ab_initio/tests/tst_ab_initio_ext.py smtbx/ab_initio/tests/tst_charge_flipping.py smtbx/absolute_structure/ smtbx/absolute_structure/tests/ smtbx/absolute_structure/tests/tst_absolute_structure.py smtbx/masks/ smtbx/masks/tests/ smtbx/masks/tests/tst_masks.py smtbx/refinement/ smtbx/refinement/constraints/ smtbx/refinement/constraints/tests/ smtbx/refinement/constraints/tests/tst_constrained_structure.py smtbx/refinement/constraints/tests/tst_direction.py smtbx/refinement/constraints/tests/tst_disorder.py smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.cpp smtbx/refinement/constraints/tests/tst_lbfgs.py smtbx/refinement/constraints/tests/tst_occupancies.py smtbx/refinement/constraints/tests/tst_reparametrisation.cpp smtbx/refinement/constraints/tests/tst_reparametrisation.py smtbx/refinement/constraints/tests/tst_rigid.py smtbx/refinement/constraints/tests/tst_same_group.py smtbx/refinement/constraints/tests/tst_special_position.cpp smtbx/refinement/restraints/ smtbx/refinement/restraints/tests/ smtbx/refinement/restraints/tests/tst_adp_restraints.py smtbx/refinement/restraints/tests/tst_manager.py smtbx/refinement/restraints/tests/tst_restraints.py smtbx/refinement/tests/ smtbx/refinement/tests/tst_least_squares.py smtbx/refinement/tests/tst_weighting_schemes.py smtbx/regression/ smtbx/regression/tst_commandline_anomrefine.py smtbx/regression/tst_commandline_refine.py smtbx/structure_factors/ smtbx/structure_factors/direct/ smtbx/structure_factors/direct/tests/ smtbx/structure_factors/direct/tests/tst_standard_xray.py smtbx/tests/ smtbx/tests/tst_utils.py sent 250,736 bytes received 519 bytes 502,510.00 bytes/sec total size is 248,243 speedup is 0.99 building file list ... done spotfinder/core_toolbox/ spotfinder/core_toolbox/boost_python/ spotfinder/core_toolbox/boost_python/tst_small_image.py sent 5,469 bytes received 37 bytes 11,012.00 bytes/sec total size is 5,074 speedup is 0.92 building file list ... done tbxx/ tbxx/tests/ tbxx/tests/tst_pretty_type_name.cpp sent 493 bytes received 41 bytes 1,068.00 bytes/sec total size is 323 speedup is 0.60 building file list ... done wxtbx/regression/ wxtbx/regression/tst_b_plot.py wxtbx/regression/tst_headless_construct.py wxtbx/regression/tst_imports.py wxtbx/regression/tst_process_control.py sent 10,261 bytes received 91 bytes 20,704.00 bytes/sec total size is 9,830 speedup is 0.95 building file list ... done xcif/ xcif/regression/ xcif/regression/tst_api_compat.py xcif/regression/tst_bindings.py xcif/regression/tst_example_parse.py xcif/regression/tst_example_tokenize.py xcif/regression/tst_gil_release.py xcif/regression/tst_iotbx_cif_reader_engine.py xcif/regression/tst_iotbx_cif_reader_parity.py xcif/regression/tst_memory.py xcif/regression/tst_non_strict_mode.py xcif/regression/tst_parse_verify.py xcif/regression/tst_pdb_coordinates.py xcif/regression/tst_pdb_sf.py xcif/regression/tst_quoted_string_delimiter.py xcif/regression/tst_roundtrip.py xcif/regression/tst_semicolon_field_strict.py xcif/regression/tst_string_interning.py xcif/regression/tst_utf8.py xcif/regression/cpp/ xcif/regression/cpp/tst_data_model.cpp xcif/regression/cpp/tst_error_handling.cpp xcif/regression/cpp/tst_infrastructure.cpp xcif/regression/cpp/tst_mapped_file.cpp xcif/regression/cpp/tst_non_strict_mode.cpp xcif/regression/cpp/tst_numeric.cpp xcif/regression/cpp/tst_quoted_string_delimiter.cpp xcif/regression/cpp/tst_semicolon_field_strict.cpp xcif/regression/cpp/tst_string_view.cpp xcif/regression/cpp/tst_thread_safety.cpp xcif/regression/cpp/tst_tokenizer.cpp sent 202,850 bytes received 557 bytes 406,814.00 bytes/sec total size is 200,767 speedup is 0.99 building file list ... done ./ annlib_adaptbx/ annlib_adaptbx/tests/ annlib_adaptbx/tests/data.txt annlib_adaptbx/tests/query.txt cctbx/maptbx/bcr/tables/ cctbx/maptbx/bcr/tables/Ag1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ag2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ag_electron.json.gz cctbx/maptbx/bcr/tables/Ag_wk1995.json.gz cctbx/maptbx/bcr/tables/Al3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Al_electron.json.gz cctbx/maptbx/bcr/tables/Al_wk1995.json.gz cctbx/maptbx/bcr/tables/Au1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Au3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Au_electron.json.gz cctbx/maptbx/bcr/tables/Au_wk1995.json.gz cctbx/maptbx/bcr/tables/B_electron.json.gz cctbx/maptbx/bcr/tables/B_wk1995.json.gz cctbx/maptbx/bcr/tables/Ba2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ba_electron.json.gz cctbx/maptbx/bcr/tables/Ba_wk1995.json.gz cctbx/maptbx/bcr/tables/Br1-_wk1995.json.gz cctbx/maptbx/bcr/tables/Br_electron.json.gz cctbx/maptbx/bcr/tables/Br_wk1995.json.gz cctbx/maptbx/bcr/tables/C_electron.json.gz cctbx/maptbx/bcr/tables/C_wk1995.json.gz cctbx/maptbx/bcr/tables/Ca2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ca_electron.json.gz cctbx/maptbx/bcr/tables/Ca_wk1995.json.gz cctbx/maptbx/bcr/tables/Cd2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Cd_electron.json.gz cctbx/maptbx/bcr/tables/Cd_wk1995.json.gz cctbx/maptbx/bcr/tables/Cl1-_wk1995.json.gz cctbx/maptbx/bcr/tables/Cl_electron.json.gz cctbx/maptbx/bcr/tables/Cl_wk1995.json.gz cctbx/maptbx/bcr/tables/Co2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Co3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Co_electron.json.gz cctbx/maptbx/bcr/tables/Co_wk1995.json.gz cctbx/maptbx/bcr/tables/Cr2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Cr3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Cr_electron.json.gz cctbx/maptbx/bcr/tables/Cr_wk1995.json.gz cctbx/maptbx/bcr/tables/Cu1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Cu2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Cu_electron.json.gz cctbx/maptbx/bcr/tables/Cu_wk1995.json.gz cctbx/maptbx/bcr/tables/D1-_wk1995.json.gz cctbx/maptbx/bcr/tables/D_wk1995.json.gz cctbx/maptbx/bcr/tables/F1-_wk1995.json.gz cctbx/maptbx/bcr/tables/F_electron.json.gz cctbx/maptbx/bcr/tables/F_wk1995.json.gz cctbx/maptbx/bcr/tables/Fe2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Fe3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Fe_electron.json.gz cctbx/maptbx/bcr/tables/Fe_wk1995.json.gz cctbx/maptbx/bcr/tables/H1-_wk1995.json.gz cctbx/maptbx/bcr/tables/H_electron.json.gz cctbx/maptbx/bcr/tables/H_wk1995.json.gz cctbx/maptbx/bcr/tables/Hg1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Hg2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Hg_electron.json.gz cctbx/maptbx/bcr/tables/Hg_wk1995.json.gz cctbx/maptbx/bcr/tables/I1-_wk1995.json.gz cctbx/maptbx/bcr/tables/I_electron.json.gz cctbx/maptbx/bcr/tables/I_wk1995.json.gz cctbx/maptbx/bcr/tables/K1+_wk1995.json.gz cctbx/maptbx/bcr/tables/K_electron.json.gz cctbx/maptbx/bcr/tables/K_wk1995.json.gz cctbx/maptbx/bcr/tables/Li1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Li_electron.json.gz cctbx/maptbx/bcr/tables/Li_wk1995.json.gz cctbx/maptbx/bcr/tables/Mg2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mg_electron.json.gz cctbx/maptbx/bcr/tables/Mg_wk1995.json.gz cctbx/maptbx/bcr/tables/Mn2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mn3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mn4+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mn_electron.json.gz cctbx/maptbx/bcr/tables/Mn_wk1995.json.gz cctbx/maptbx/bcr/tables/Mo3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mo5+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mo6+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mo_electron.json.gz cctbx/maptbx/bcr/tables/Mo_wk1995.json.gz cctbx/maptbx/bcr/tables/N_electron.json.gz cctbx/maptbx/bcr/tables/N_wk1995.json.gz cctbx/maptbx/bcr/tables/Na1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Na_electron.json.gz cctbx/maptbx/bcr/tables/Na_wk1995.json.gz cctbx/maptbx/bcr/tables/Ni2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ni3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ni_electron.json.gz cctbx/maptbx/bcr/tables/Ni_wk1995.json.gz cctbx/maptbx/bcr/tables/O1-_wk1995.json.gz cctbx/maptbx/bcr/tables/O2-_wk1995.json.gz cctbx/maptbx/bcr/tables/O_electron.json.gz cctbx/maptbx/bcr/tables/O_wk1995.json.gz cctbx/maptbx/bcr/tables/P_electron.json.gz cctbx/maptbx/bcr/tables/P_wk1995.json.gz cctbx/maptbx/bcr/tables/Pt2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Pt4+_wk1995.json.gz cctbx/maptbx/bcr/tables/Pt_electron.json.gz cctbx/maptbx/bcr/tables/Pt_wk1995.json.gz cctbx/maptbx/bcr/tables/S_electron.json.gz cctbx/maptbx/bcr/tables/S_wk1995.json.gz cctbx/maptbx/bcr/tables/Se_electron.json.gz cctbx/maptbx/bcr/tables/Se_wk1995.json.gz cctbx/maptbx/bcr/tables/Si4+_wk1995.json.gz cctbx/maptbx/bcr/tables/Si_electron.json.gz cctbx/maptbx/bcr/tables/Si_wk1995.json.gz cctbx/maptbx/bcr/tables/T1-_wk1995.json.gz cctbx/maptbx/bcr/tables/T_wk1995.json.gz cctbx/maptbx/bcr/tables/Ti2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ti3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ti4+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ti_electron.json.gz cctbx/maptbx/bcr/tables/Ti_wk1995.json.gz cctbx/maptbx/bcr/tables/Zn2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Zn_electron.json.gz cctbx/maptbx/bcr/tables/Zn_wk1995.json.gz cctbx/regression/itvb_2001_table_a1427_hall_symbols.html cctbx/regression/data/ cctbx/regression/data/D7.ccp4 cctbx/regression/data/D7.ncs_spec cctbx/regression/data/D7.pdb cctbx/regression/data/D7.seq cma_es/cma/ cma_es/cma/initials.par fable/fem/ fable/fem/major_types.hpp fable/test/sf_times.py fable/test/lenient/ fable/test/lenient/NOTE fable/test/lenient/calling_non_external_arg.f fable/test/lenient/str_blank_str.f fable/test/lenient/str_cont_line_str.f fable/test/semantic_error/ fable/test/semantic_error/assignment_to_parameter.f fable/test/semantic_error/calling_array.f fable/test/semantic_error/calling_dimension.f fable/test/semantic_error/common_equivalence.f fable/test/semantic_error/dimension_unknown_data_type.f fable/test/semantic_error/dims_repeated_in_common.f fable/test/semantic_error/dims_repeated_in_dimension.f fable/test/semantic_error/equivalence_external.f fable/test/semantic_error/external_array.f fable/test/semantic_error/external_common.f fable/test/semantic_error/function_data_type_decl_twice.f fable/test/semantic_error/function_name_is_also_arg.f fable/test/semantic_error/inquire_both_unit_and_file.f fable/test/semantic_error/inquire_no_unit_no_file.f fable/test/semantic_error/intrinsic_common.f fable/test/semantic_error/intrinsic_dimension.f fable/test/semantic_error/missing_include.f fable/test/semantic_error/parameter_array.f fable/test/semantic_error/parameter_in_common.f fable/test/semantic_error/parameter_in_sub_args.f fable/test/semantic_error/parameter_save.f fable/test/semantic_error/real_declared_twice.f fable/test/semantic_error/recursion_in_declaration.f fable/test/semantic_error/sub_fun_2.f fable/test/semantic_error/subroutine_name_is_also_arg.f fable/test/semantic_error/twice_in_sub_args.f fable/test/semantic_error/unknown_intrinsic.f fable/test/semantic_error/write_end.f fable/test/semantic_error/write_without_unit.f fable/test/syntax_error/ fable/test/syntax_error/bad_after_dot.f fable/test/syntax_error/bad_and.f fable/test/syntax_error/bad_complex_literal_1.f fable/test/syntax_error/bad_complex_literal_2.f fable/test/syntax_error/bad_data.f fable/test/syntax_error/bad_false.f fable/test/syntax_error/bad_format_1.f fable/test/syntax_error/bad_format_2.f fable/test/syntax_error/bad_format_3.f fable/test/syntax_error/bad_format_4.f fable/test/syntax_error/bad_format_5.f fable/test/syntax_error/bad_format_6.f fable/test/syntax_error/bad_format_7.f fable/test/syntax_error/bad_gt.f fable/test/syntax_error/bad_implied_do_1.f fable/test/syntax_error/bad_implied_do_2.f fable/test/syntax_error/bad_implied_do_3.f fable/test/syntax_error/bad_implied_do_4.f fable/test/syntax_error/bad_implied_do_5.f fable/test/syntax_error/bad_implied_do_6.f fable/test/syntax_error/bad_not.f fable/test/syntax_error/bad_not_2.f fable/test/syntax_error/bad_open_err_label.f fable/test/syntax_error/bad_or.f fable/test/syntax_error/bad_true.f fable/test/syntax_error/bare_data.f fable/test/syntax_error/bare_external.f fable/test/syntax_error/bare_integer_i.f fable/test/syntax_error/bare_print.f fable/test/syntax_error/closing_parenthesis_without_matching.f fable/test/syntax_error/common_with_data_size.f fable/test/syntax_error/data_plus_repetition.f fable/test/syntax_error/dimension_with_data_size.f fable/test/syntax_error/dot_e.f fable/test/syntax_error/duplicate_format_label.f fable/test/syntax_error/exclamation_mark_syndrome.f fable/test/syntax_error/format_without_label.f fable/test/syntax_error/fun_star.f fable/test/syntax_error/j_assign_i_percent_5.f fable/test/syntax_error/label_cont_char.f fable/test/syntax_error/label_empty.f fable/test/syntax_error/not_an_identifier.f fable/test/syntax_error/opening_parenthesis_without_matching.f fable/test/syntax_error/power_no_base.f fable/test/syntax_error/power_no_exponent.f fable/test/syntax_error/read_plus_name.f fable/test/syntax_error/read_star_comma_empty.f fable/test/syntax_error/read_star_name.f fable/test/syntax_error/save_bad_comma.f fable/test/syntax_error/save_num_comma_colon.f fable/test/syntax_error/save_num_val_colon.f fable/test/syntax_error/save_slash_slash.f fable/test/syntax_error/save_with_dims.f fable/test/syntax_error/sub_bad_comma.f fable/test/syntax_error/sub_bad_trailing.f fable/test/syntax_error/sub_no_name.f fable/test/syntax_error/sub_open_parenthesis.f fable/test/syntax_error/sub_percent_3.f fable/test/syntax_error/x_assign_1dotd.f fable/test/syntax_error/x_assign_1ex.f fable/test/syntax_error/x_assign_dot.f fable/test/syntax_error/x_assign_dot_2.f fable/test/unsupported/ fable/test/unsupported/goto_into_loop.f fable/test/unsupported/hollerith_cont_lines.f fable/test/unsupported/hollerith_with_quotes.f fable/test/unsupported/parameter_pow.f fable/test/valid/ fable/test/valid/add_dp_integer.f fable/test/valid/add_real_integer.f fable/test/valid/add_reals.f fable/test/valid/add_strings.f fable/test/valid/arr_float_2.f fable/test/valid/array_origin.f fable/test/valid/assign_to_array_elements.f fable/test/valid/blockdata_named.f fable/test/valid/blockdata_unnamed.f fable/test/valid/character_1_array_passing.f fable/test/valid/character_1_f90.f fable/test/valid/character_function.f fable/test/valid/character_function_2.f fable/test/valid/character_function_3.f 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iotbx/regression/data/non_zero_origin_model_split.cif iotbx/regression/data/non_zero_origin_model_split.pdb iotbx/regression/data/non_zero_origin_ncs_model.cif iotbx/regression/data/non_zero_origin_ncs_model.pdb iotbx/regression/data/non_zero_origin_ncs_spec.ncs_spec iotbx/regression/data/pdb1zff.ent iotbx/regression/data/phaser_1.mtz iotbx/regression/data/shelx.ins iotbx/regression/secondary_structure/1ubf_cutted.pdb iotbx/regression/secondary_structure/3jd6_noh.pdb iotbx/regression/secondary_structure/4a7h_chainC.pdb iotbx/regression/secondary_structure/5a63_chainBp.pdb iotbx/regression/secondary_structure/5a63_chainCp.pdb iotbx/xds/tests/INTEGRATE.HKL iotbx/xds/tests/NEW_XPARM.XDS iotbx/xds/tests/XDS.INP iotbx/xds/tests/XDS_2.INP iotbx/xds/tests/XPARM.XDS libtbx/citations.params mmtbx/regression/pdbs/ mmtbx/regression/pdbs/1ucs_cutted_xyz_rounded.pdb mmtbx/regression/pdbs/1yjp_h.pdb mmtbx/regression/pdbs/2ERL_noH.pdb mmtbx/regression/pdbs/7n2l.pdb mmtbx/regression/pdbs/AF_json_v3.cif mmtbx/regression/pdbs/AF_json_v3.pdb mmtbx/regression/pdbs/Fe_1brf_snip_reduced.pdb mmtbx/regression/pdbs/fibronectin_af_ca_1358_1537.cif mmtbx/regression/pdbs/fibronectin_af_ca_1358_1537.pdb mmtbx/regression/pdbs/ligand_before_prot.pdb mmtbx/regression/pdbs/one_chain_ligand_water.pdb mmtbx/regression/pdbs/p9.pdb mmtbx/regression/pdbs/pae.pdb mmtbx/regression/pdbs/pae_model.cif mmtbx/regression/pdbs/pae_model.pdb mmtbx/regression/pdbs/test1.cif mmtbx/regression/pdbs/two_chains.pdb mmtbx/regression/pdbs/two_chains_ligand_water.pdb rstbx/indexing/results2.dat rstbx/indexing/si_brief.dat rstbx/indexing/si_synthetic.dat scitbx/array_family/boost_python/regression_test.py scitbx/tests/__init__.py scitbx/tests/differential_evolution.py scitbx/tests/direct_search_simulated_annealing.py scitbx/tests/golden_section_search.py scitbx/tests/simplex.py smtbx/regression/test_data/ smtbx/regression/test_data/sucrose_p1.res smtbx/regression/test_data/thpp.cif smtbx/regression/test_data/thpp.hkl smtbx/regression/test_data/thpp.ins sent 85,697,619 bytes received 11,394 bytes 57,139,342.00 bytes/sec total size is 85,700,051 speedup is 1.00 I: pybuild base:383: debian/install-cctbx.sh -- --destdir=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp --pyver=3.14 --srcdir=/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 --builddir='/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build'_ --modules='annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif' debian/install-cctbx.sh: line 7: 0: command not found --destdir '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp' --pyver '3.14' --srcdir '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' --builddir '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_' --modules 'annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif' -- Installing CCTBX into a FHS system Modules: annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx serialtbx smtbx spotfinder tbxx wxtbx xcif From the source /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 and build /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_ To the FHS : destdir /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp pyver 3.14 bindir /usr/bin incdir /usr/include pkglibdir /usr/lib/cctbx/python3.14 libdir /usr/lib/loongarch64-linux-gnu pythondir /usr/lib/python3.14/dist-packages with PYTHONPATH /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build Copying libtbx_env from /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/.pybuild/cpython3_3.14_cctbx/build_ to /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14 {'_dispatcher_include_at_start': [], '_dispatcher_include_before_command': [], '_dispatcher_precall_commands': None, '_dispatcher_registry': {relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/annlib.python"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/bin/python3.14"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/annlib.show_build_path"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_build_path.py"), 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relocatable="../../../iotbx/command_line/xplor.map.show_summary.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/labelit.png"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../iotbx/command_line/detector_image_as_png.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.add_docstrings_with_ai"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/add_docstrings_with_ai.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.analyse_code_comments"): 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relocatable="bin/libtbx.assert_not_show_diff"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/assert_not_show_diff.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.assert_stdin"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/assert_stdin.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.assert_stdin_contains_strings"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/assert_stdin_contains_strings.py"), 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relocatable="../../../libtbx/command_line/bundle_as_exe.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.bundle_as_selfx"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/bundle_as_selfx.csh"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.check_libcpp"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/check_libcpp.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/libtbx.chunk"): 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relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../smtbx/command_line/masks.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/smtbx.python"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/bin/python3.14"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/smtbx.refine"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../smtbx/command_line/refine.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/smtbx.show_build_path"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/smtbx.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/sphinx.build"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/sphinx_build.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/spotfinder.python"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/bin/python3.14"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/spotfinder.show_build_path"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/spotfinder.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/wxtbx.anomalous_differences_histogram"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../wxtbx/command_line/anomalous_differences_histogram.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/wxtbx.inspect_r_free_flags"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../wxtbx/command_line/inspect_r_free_flags.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/wxtbx.plan_sad_experiment"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../wxtbx/command_line/plan_sad_experiment.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/wxtbx.python"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/bin/python3.14"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/wxtbx.show_build_path"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/wxtbx.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/wxtbx.show_file_info"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../wxtbx/command_line/show_file_info.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/wxtbx.xtriage"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../wxtbx/command_line/xtriage.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/xcif.python"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/bin/python3.14"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/xcif.show_build_path"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin/xcif.show_dist_paths"): relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/show_dist_paths.py")}, 'bin_path': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="bin"), 'boost_version': 109200, 'build_options': , 'build_path': absolute_path("/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14"), 'command_line_redirections': {}, 'command_version_suffix': None, 'dispatcher_name': None, 'exe_path': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="exe"), 'explicitly_requested_modules': {'annlib', 'annlib_adaptbx', 'boost_adaptbx', 'cbflib_adaptbx', 'ccp4io', 'ccp4io_adaptbx', 'cctbx', 'cma_es', 'crys3d', 'dxtbx', 'fable', 'gltbx', 'iotbx', 'libtbx', 'mmtbx', 'omptbx', 'rstbx', 'scitbx', 'serialtbx', 'smtbx', 'spotfinder', 'tbxx', 'wxtbx', 'xcif'}, 'full_testing': False, 'include_path': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="include"), 'installed': False, 'installed_modules': [], 'installed_order': [], 'lib_path': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="lib"), 'missing_for_build': {'boost'}, 'missing_for_use': set(), 'missing_optional': {'reduce', 'king', 'cbflib', 'boost', 'probe', 'docutils'}, 'module_dict': {'annlib': , 'boost': , 'cbflib': , 'ccp4io': , 'cctbx': , 'chiltbx': , 'cma_es': , 'crys3d': , 'dxtbx': , 'fable': , 'gltbx': , 'iotbx': , 'libtbx': , 'mmtbx': , 'omptbx': , 'rstbx': , 'scitbx': , 'serialtbx': , 'smtbx': , 'spotfinder': , 'tbxx': , 'ucif': , 'wxtbx': , 'xcif': }, 'module_dist_paths': {'annlib': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../annlib"), 'annlib_adaptbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../annlib_adaptbx"), 'boost_adaptbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../boost_adaptbx"), 'cbflib_adaptbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../cbflib_adaptbx"), 'ccp4io': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../ccp4io"), 'ccp4io_adaptbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../ccp4io_adaptbx"), 'cctbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../cctbx"), 'chiltbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../chiltbx"), 'cma_es': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../cma_es"), 'crys3d': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../crys3d"), 'dxtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../dxtbx"), 'fable': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../fable"), 'gltbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../gltbx"), 'iotbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../iotbx"), 'libtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx"), 'mmtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../mmtbx"), 'omptbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../omptbx"), 'rstbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../rstbx"), 'scitbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../scitbx"), 'serialtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../serialtbx"), 'smtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../smtbx"), 'spotfinder': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../spotfinder"), 'tbxx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../tbxx"), 'ucif': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../ucif"), 'wxtbx': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../wxtbx"), 'xcif': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../xcif")}, 'module_list': [, , , , , , , , , , , , , , , , , , , , , , , ], 'no_bin_python': False, 'path_utility': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../libtbx/command_line/path_utility.py"), 'python_exe': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/bin/python3.14"), 'python_version_major_minor': (3, 14), 'pythonpath': [relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../.."), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../dxtbx/src"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../../boost_adaptbx"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="lib"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/lib/python3.14/dist-packages"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/lib/python3/dist-packages"), relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr/local/lib/python3.14/dist-packages")], 'relocatable': True, 'repository_paths': [relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="../../..")], 'scons_dist_path': relocatable_path(anchor="/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14", relocatable="/usr")} Saved /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1/debian/tmp/usr/lib/cctbx/python3.14/libtbx_env env {'_dispatcher_include_at_start': [], '_dispatcher_include_before_command': [], '_dispatcher_precall_commands': None, '_dispatcher_registry': {relocatable_path(anchor="/usr", relocatable="bin/annlib.python"): relocatable_path(anchor="/usr", relocatable="bin/python3.14"), relocatable_path(anchor="/usr", relocatable="bin/annlib.show_build_path"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_build_path.py"), relocatable_path(anchor="/usr", relocatable="bin/annlib.show_dist_paths"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/show_dist_paths.py"), relocatable_path(anchor="/usr", relocatable="bin/boost.gcd"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/boost_adaptbx/command_line/gcd.py"), relocatable_path(anchor="/usr", relocatable="bin/boost.lcm"): relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/boost_adaptbx/command_line/lcm.py"), relocatable_path(anchor="/usr", relocatable="bin/boost.python"): relocatable_path(anchor="/usr", relocatable="bin/python3.14"), 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'module_list': [, , , , , , , , , , , , , , , , , , , , , , , ], 'no_bin_python': True, 'path_utility': relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages/libtbx/command_line/path_utility.py"), 'python_exe': relocatable_path(anchor="/usr", relocatable="bin/python3.14"), 'python_version_major_minor': (3, 14), 'pythonpath': [], 'relocatable': True, 'repository_paths': [relocatable_path(anchor="/usr", relocatable="lib/python3/dist-packages")], 'scons_dist_path': relocatable_path(anchor="/usr", relocatable=".")} building file list ... done ./ boost_adaptbx/ boost_adaptbx/tests/ boost_adaptbx/tests/tst_optional_copy iotbx/ iotbx/pdb/ iotbx/pdb/hybrid_36_fem scitbx/ scitbx/array_family/ scitbx/array_family/tst_accessors scitbx/array_family/tst_af_1 scitbx/array_family/tst_af_2 scitbx/array_family/tst_af_3 scitbx/array_family/tst_af_4 scitbx/array_family/tst_af_5 scitbx/array_family/tst_mat3 scitbx/array_family/tst_optional_copy scitbx/array_family/tst_rectangular_full_packed scitbx/array_family/tst_ref_matrix_facet scitbx/array_family/tst_sym_mat3 scitbx/array_family/tst_unsigned_float_arithmetic scitbx/array_family/tst_vec3 scitbx/error/ scitbx/error/tst_error scitbx/lbfgs/ scitbx/lbfgs/tst_lbfgs scitbx/math/ scitbx/math/tests/ scitbx/math/tests/tst scitbx/matrix/ scitbx/matrix/tests/ scitbx/matrix/tests/tst_cholesky scitbx/matrix/tests/tst_givens scitbx/matrix/tests/tst_householder scitbx/matrix/tests/tst_svd scitbx/serialization/ scitbx/serialization/tst_base_256 smtbx/ smtbx/refinement/ smtbx/refinement/constraints/ smtbx/refinement/constraints/tests/ smtbx/refinement/constraints/tests/tst_geometrical_hydrogens smtbx/refinement/constraints/tests/tst_reparametrisation smtbx/refinement/constraints/tests/tst_special_position sent 16,257,528 bytes received 568 bytes 32,516,192.00 bytes/sec total size is 16,245,752 speedup is 1.00 building file list ... done ./ libann_adaptor.so.0.0.1 libasymmetric_map.so.0.0.1 libcbf-private.so.0.0.1 libccp4io.so.0.0.1 libcctbx.so.0.0.1 libcctbx_sgtbx_asu.so.0.0.1 libdxtbxspotfinder.so.0.0.1 libiotbx_mtz.so.0.0.1 libiotbx_pdb.so.0.0.1 libiotbx_xplor.so.0.0.1 libmmtbx_masks.so.0.0.1 libmmtbx_tls.so.0.0.1 libomptbx.so.0.0.1 librstbx.so.0.0.1 libscitbx_boost_python.so.0.0.1 libscitbx_minpack.so.0.0.1 libscitbx_slatec.so.0.0.1 libsmtbx_refinement_constraints.so.0.0.1 libspotfinder.so.0.0.1 libxcif.so.0.0.1 sent 56,930,755 bytes received 519 bytes 37,954,182.67 bytes/sec total size is 56,913,810 speedup is 1.00 building file list ... done sent 112 bytes received 12 bytes 248.00 bytes/sec total size is 2,068 speedup is 16.68 building file list ... done boost_adaptbx/ sent 753 bytes received 19 bytes 1,544.00 bytes/sec total size is 72,301 speedup is 93.65 building file list ... done sent 363 bytes received 12 bytes 750.00 bytes/sec total size is 21,627 speedup is 57.67 building file list ... done sent 567 bytes received 12 bytes 1,158.00 bytes/sec total size is 86,686 speedup is 149.72 building file list ... done sent 7,187 bytes received 12 bytes 14,398.00 bytes/sec total size is 1,930,152 speedup is 268.11 building file list ... done sent 119 bytes received 12 bytes 262.00 bytes/sec total size is 6,671 speedup is 50.92 building file list ... done sent 190 bytes received 12 bytes 404.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done sent 1,095 bytes received 12 bytes 2,214.00 bytes/sec total size is 399,803 speedup is 361.16 building file list ... done ./ sent 1,215 bytes received 19 bytes 2,468.00 bytes/sec total size is 201,540 speedup is 163.32 building file list ... done sent 311 bytes received 12 bytes 646.00 bytes/sec total size is 597,954 speedup is 1,851.25 building file list ... done sent 1,488 bytes received 12 bytes 3,000.00 bytes/sec total size is 270,737 speedup is 180.49 building file list ... done sent 1,574 bytes received 12 bytes 3,172.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done sent 3,182 bytes received 12 bytes 6,388.00 bytes/sec total size is 2,048,540 speedup is 641.37 building file list ... done sent 123 bytes received 12 bytes 270.00 bytes/sec total size is 1,850 speedup is 13.70 building file list ... done sent 1,054 bytes received 12 bytes 2,132.00 bytes/sec total size is 109,476 speedup is 102.70 building file list ... done scitbx/ scitbx/array_family/ scitbx/array_family/boost_python/ scitbx/array_family/detail/ sent 7,774 bytes received 32 bytes 15,612.00 bytes/sec total size is 1,886,651 speedup is 241.69 building file list ... done sent 154 bytes received 12 bytes 332.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done sent 1,359 bytes received 12 bytes 2,742.00 bytes/sec total size is 179,686 speedup is 131.06 building file list ... done sent 536 bytes received 12 bytes 1,096.00 bytes/sec total size is 41,966 speedup is 76.58 building file list ... done sent 225 bytes received 12 bytes 474.00 bytes/sec total size is 11,532 speedup is 48.66 building file list ... done sent 151 bytes received 12 bytes 326.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done sent 283 bytes received 12 bytes 590.00 bytes/sec total size is 23,452 speedup is 79.50 building file list ... done ./ boost_adaptbx/ boost_adaptbx/type_id_eq.h cctbx/ cctbx/boost_python/ cctbx/boost_python/flex_fwd.h scitbx/ scitbx/lbfgs_fem.hpp scitbx/array_family/ scitbx/array_family/operator_traits_builtin.h scitbx/array_family/ref_algebra.h scitbx/array_family/ref_apply.h scitbx/array_family/shared_algebra.h scitbx/array_family/shared_apply.h scitbx/array_family/shared_plain_apply.h scitbx/array_family/shared_reductions.h scitbx/array_family/small_algebra.h scitbx/array_family/small_apply.h scitbx/array_family/small_plain_apply.h scitbx/array_family/small_reductions.h scitbx/array_family/tiny_algebra.h scitbx/array_family/tiny_apply.h scitbx/array_family/tiny_plain_apply.h scitbx/array_family/tiny_reductions.h scitbx/array_family/versa_algebra.h scitbx/array_family/versa_apply.h scitbx/array_family/versa_plain_apply.h scitbx/array_family/versa_reductions.h scitbx/array_family/boost_python/ scitbx/array_family/boost_python/flex_fwd.h scitbx/array_family/detail/ scitbx/array_family/detail/operator_functors.h scitbx/array_family/detail/std_imports.h smtbx/ smtbx/boost_python/ smtbx/boost_python/flex_fwd.h sent 347,326 bytes received 540 bytes 695,732.00 bytes/sec total size is 345,070 speedup is 0.99 building file list ... done sent 242 bytes received 12 bytes 508.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done boost_adaptbx/ boost_adaptbx/command_line/ boost_adaptbx/command_line/__init__.py boost_adaptbx/command_line/divide_by_zero.py boost_adaptbx/command_line/double_overflow.py boost_adaptbx/command_line/gcd.py boost_adaptbx/command_line/inexact.py boost_adaptbx/command_line/int_overflow.py boost_adaptbx/command_line/lcm.py boost_adaptbx/command_line/nested_cpp_loops_with_check_signals.py boost_adaptbx/command_line/segmentation_fault.py boost_adaptbx/command_line/show_environ_usage.py boost_adaptbx/command_line/show_platform_info.py sent 7,880 bytes received 231 bytes 16,222.00 bytes/sec total size is 6,883 speedup is 0.85 building file list ... done cbflib_adaptbx/ cbflib_adaptbx/command_line/ cbflib_adaptbx/command_line/__init__.py cbflib_adaptbx/command_line/dump.py sent 1,533 bytes received 60 bytes 3,186.00 bytes/sec total size is 1,215 speedup is 0.76 building file list ... done sent 139 bytes received 12 bytes 302.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done cctbx/ cctbx/command_line/ cctbx/command_line/__init__.py cctbx/command_line/auto_sharpen.py cctbx/command_line/brehm_diederichs.py cctbx/command_line/cctbx_test_nightly.py cctbx/command_line/cod_select_and_pickle.py cctbx/command_line/diffuse.py cctbx/command_line/eltbx.show_fp_fdp.py cctbx/command_line/euclidean_model_matching.py cctbx/command_line/find_reticular_twin_laws.py cctbx/command_line/form_factor_query.py cctbx/command_line/precession_view.py cctbx/command_line/qscore.py cctbx/command_line/samosa_join.py cctbx/command_line/samosa_scale.py cctbx/command_line/segment_and_split_map.py cctbx/command_line/space_group_info.py cctbx/command_line/structure_factor_timings.py cctbx/command_line/subgroups.py cctbx/command_line/version.py cctbx/command_line/wavelength_units.py cctbx/command_line/web.install.csh sent 43,161 bytes received 421 bytes 87,164.00 bytes/sec total size is 39,872 speedup is 0.91 building file list ... done sent 81 bytes received 12 bytes 186.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done crys3d/ crys3d/command_line/ crys3d/command_line/HKLinfo.py crys3d/command_line/HKLviewer.py crys3d/command_line/__init__.py crys3d/command_line/compare_datasets.py crys3d/command_line/hklview.py crys3d/command_line/make_install_HKLviewer_ChimeraX.py crys3d/command_line/model_viewer.py crys3d/command_line/multiplicity_viewer.py crys3d/command_line/qttbx.view_structure.py crys3d/command_line/visualize_r_factors.py sent 32,588 bytes received 212 bytes 65,600.00 bytes/sec total size is 31,684 speedup is 0.97 building file list ... done dxtbx/ dxtbx/command_line/ dxtbx/command_line/__init__.py dxtbx/command_line/any2nexus.py dxtbx/command_line/debug_memory.py dxtbx/command_line/depends_on.py dxtbx/command_line/detector_superpose.py dxtbx/command_line/display_parallax_correction.py dxtbx/command_line/dlsnxs2cbf.py dxtbx/command_line/image2pickle.py dxtbx/command_line/image_availability.py dxtbx/command_line/image_average.py dxtbx/command_line/install_format.py dxtbx/command_line/overload.py dxtbx/command_line/plot_detector_models.py dxtbx/command_line/print_header.py dxtbx/command_line/print_matching_images.py dxtbx/command_line/radial_average.py dxtbx/command_line/read_sequence.py dxtbx/command_line/saturation.py dxtbx/command_line/show_mask_info.py dxtbx/command_line/show_matching_formats.py dxtbx/command_line/show_registry.py dxtbx/command_line/simulate_collection.py sent 112,434 bytes received 440 bytes 225,748.00 bytes/sec total size is 110,557 speedup is 0.98 building file list ... done fable/ fable/command_line/ fable/command_line/__init__.py fable/command_line/cout.py fable/command_line/fem_include_search_paths.py fable/command_line/insert_write_at_start_of_each_procedure.py fable/command_line/read.py fable/command_line/show_calls.py fable/command_line/split.py sent 16,378 bytes received 155 bytes 33,066.00 bytes/sec total size is 15,611 speedup is 0.94 building file list ... done gltbx/ gltbx/command_line/ gltbx/command_line/__init__.py gltbx/command_line/try_imports.py sent 867 bytes received 60 bytes 1,854.00 bytes/sec total size is 606 speedup is 0.65 building file list ... done iotbx/ iotbx/command_line/ iotbx/command_line/__init__.py iotbx/command_line/biomt_reconstruction.py iotbx/command_line/blast_pdb.py iotbx/command_line/build_phil_cache.py iotbx/command_line/cbf_read.py iotbx/command_line/cif.as_miller_arrays.py iotbx/command_line/cif.as_xray_structure.py iotbx/command_line/cif.validate.py iotbx/command_line/cif_as_pdb.py iotbx/command_line/cns.reflection_reader.py iotbx/command_line/cns.sdb_reader.py iotbx/command_line/cns.transfer_crystal_symmetry.py iotbx/command_line/cns_as_mtz.py iotbx/command_line/crystal_symmetry_from_any.py iotbx/command_line/csv_as_mtz.py iotbx/command_line/dano_as_amplitudes.py iotbx/command_line/detector_image_as_png.py iotbx/command_line/distance_least_squares.py iotbx/command_line/dtrek.to_cns.py iotbx/command_line/effective_resolution.py iotbx/command_line/emma.py iotbx/command_line/explore_metric_symmetry.py iotbx/command_line/export_scalepack_unmerged.py iotbx/command_line/file_reader.py iotbx/command_line/flip_symmetric_amino_acids.py iotbx/command_line/french_wilson.py iotbx/command_line/get_pubmed_citation.py iotbx/command_line/lattice_symmetry.py iotbx/command_line/merging_statistics.py iotbx/command_line/mtrix_reconstruction.py iotbx/command_line/mtz.dump.py iotbx/command_line/mtz_as_cif.py iotbx/command_line/patterson_map.py iotbx/command_line/pdb.as_xray_structure.py iotbx/command_line/pdb.b_factor_stats.py iotbx/command_line/pdb.box_around_molecule.py iotbx/command_line/pdb.hierarchy.py iotbx/command_line/pdb.insert_scale_records.py iotbx/command_line/pdb.join_fragment_files.py iotbx/command_line/pdb.link_as_geometry_restraints_edits.py iotbx/command_line/pdb.print_sequence.py iotbx/command_line/pdb.superpose_atoms_by_name.py iotbx/command_line/pdb.superpose_centers_of_mass.py iotbx/command_line/pdb_add_conformations.py iotbx/command_line/pdb_as_cif.py iotbx/command_line/pdb_as_fasta.py iotbx/command_line/pdb_cif_conversion.py iotbx/command_line/pdb_get_citation.py iotbx/command_line/pdb_labels_comparison.py iotbx/command_line/pdb_labels_diff.py iotbx/command_line/pdb_remediator.py iotbx/command_line/pdb_show_connectivity.py iotbx/command_line/pdb_split_models.py iotbx/command_line/phil.py iotbx/command_line/poscar_as_xray_structure.py iotbx/command_line/r_free_flags_accumulation.py iotbx/command_line/r_free_flags_as_cns.py iotbx/command_line/r_free_flags_completion_simple.py iotbx/command_line/reflection_file_converter.py iotbx/command_line/reflection_file_editor.py iotbx/command_line/reflection_file_reader.py iotbx/command_line/reflection_statistics.py iotbx/command_line/reindex.py iotbx/command_line/shelx.as_cif.py iotbx/command_line/shelx.as_xray_structure.py iotbx/command_line/shelx.dump_as_python.py iotbx/command_line/show_distances.py iotbx/command_line/show_systematic_absences.py iotbx/command_line/simple_map_coefficients.py iotbx/command_line/sort_atoms.py iotbx/command_line/split_data_cif.py iotbx/command_line/symmetry_search.py iotbx/command_line/unique_with_biomt.py iotbx/command_line/xplor.map.show_summary.py sent 252,618 bytes received 1,428 bytes 508,092.00 bytes/sec total size is 246,561 speedup is 0.97 building file list ... done libtbx/ libtbx/command_line/ libtbx/command_line/__init__.py libtbx/command_line/add_docstrings_with_ai.py libtbx/command_line/analyse_code_comments.py libtbx/command_line/any2unix.py libtbx/command_line/assert_line_count.py libtbx/command_line/assert_not_show_diff.py libtbx/command_line/assert_stdin.py libtbx/command_line/assert_stdin_contains_strings.py libtbx/command_line/assert_stdin_ends_with.py libtbx/command_line/bash.sh libtbx/command_line/bibtex.sh libtbx/command_line/bootstrap.py libtbx/command_line/bundle_as_exe.py libtbx/command_line/bundle_as_selfx.csh libtbx/command_line/cctbx_chunk.py libtbx/command_line/check_libcpp.py libtbx/command_line/clean_clutter.py libtbx/command_line/clear_paths.py libtbx/command_line/configure.bat libtbx/command_line/configure.sh libtbx/command_line/create_cctbx_bundle_for_installer.py libtbx/command_line/create_install_script_bat.py libtbx/command_line/create_installer.py libtbx/command_line/create_mac_app.py libtbx/command_line/create_selfx.py libtbx/command_line/create_unzipsfx.py libtbx/command_line/create_windows_exe.py libtbx/command_line/csh.sh libtbx/command_line/dtrace.py libtbx/command_line/easy_qsub.py libtbx/command_line/env_run.py libtbx/command_line/epydoc_run.py libtbx/command_line/exec.sh libtbx/command_line/extract_code_from_txt.py libtbx/command_line/find_clutter.py libtbx/command_line/find_files.py libtbx/command_line/find_in_repositories.py libtbx/command_line/find_old_style_classes.py libtbx/command_line/find_pdb_mmcif_problems.py libtbx/command_line/find_reserved_names.py libtbx/command_line/find_under_build.py libtbx/command_line/find_untested.py libtbx/command_line/find_unused_imports.py libtbx/command_line/find_unused_imports_crude.py libtbx/command_line/gdb.sh libtbx/command_line/git_avoid_merges.py libtbx/command_line/help.py libtbx/command_line/import_all_ext.py libtbx/command_line/import_all_python.py libtbx/command_line/install.py libtbx/command_line/install_conda.py libtbx/command_line/ipython_shell_start.py libtbx/command_line/latex.sh libtbx/command_line/line_count.py libtbx/command_line/list_files.py libtbx/command_line/list_modules.py libtbx/command_line/list_source_files_sorted_by_size.py libtbx/command_line/make_dist.py libtbx/command_line/make_sphinx_html.py libtbx/command_line/nequal.py libtbx/command_line/parallel_simple.py libtbx/command_line/path_utility.py libtbx/command_line/pdflatex.sh libtbx/command_line/phil.py libtbx/command_line/prime_factors_of.py libtbx/command_line/printenv.py libtbx/command_line/py_compile_all.py libtbx/command_line/raise_exception_for_testing.py libtbx/command_line/refresh.bat libtbx/command_line/refresh.sh libtbx/command_line/reindent.py libtbx/command_line/remote_processing.py libtbx/command_line/remove_tree.py libtbx/command_line/remove_unused_imports.py libtbx/command_line/resource_monitor_plot.py libtbx/command_line/run_pickled_function.py libtbx/command_line/run_tests_parallel.py libtbx/command_line/scons.py libtbx/command_line/seconds_since_the_epoch.py libtbx/command_line/sge_available_slots.py libtbx/command_line/sge_qstat_counts.py libtbx/command_line/sh.sh libtbx/command_line/show_all_on_path.py libtbx/command_line/show_bin_path.py libtbx/command_line/show_build_options.py libtbx/command_line/show_build_path.py libtbx/command_line/show_but_no_repr.py libtbx/command_line/show_commands.py libtbx/command_line/show_date_and_time.py libtbx/command_line/show_dist_paths.py libtbx/command_line/show_env.py libtbx/command_line/show_environ_usage.py libtbx/command_line/show_full_command_path.py libtbx/command_line/show_host_and_user.py libtbx/command_line/show_include_paths.py libtbx/command_line/show_lib_path.py libtbx/command_line/show_module_dependencies.py libtbx/command_line/show_number_of_processors.py libtbx/command_line/show_numeric_version.py libtbx/command_line/show_numpy_version.py libtbx/command_line/show_python_dependencies.py libtbx/command_line/show_python_sys_executable.py libtbx/command_line/show_pythonpath.py libtbx/command_line/show_repository_paths.py libtbx/command_line/show_tests.py libtbx/command_line/show_variable_names.py libtbx/command_line/sphinx_build.py libtbx/command_line/start_binary_bundle.py libtbx/command_line/start_process.py libtbx/command_line/tcsh.sh libtbx/command_line/unpack_in_sources.csh libtbx/command_line/valgrind.sh libtbx/command_line/wait_for_file.py sent 232,614 bytes received 2,169 bytes 469,566.00 bytes/sec total size is 223,279 speedup is 0.95 building file list ... done mmtbx/ mmtbx/command_line/ mmtbx/command_line/__init__.py mmtbx/command_line/altloc_remediate.py mmtbx/command_line/angle.py mmtbx/command_line/apply_ncs_to_ligand.py mmtbx/command_line/arginine_geometry.py mmtbx/command_line/atom_valence_simple.py mmtbx/command_line/barbed_wire_analysis.py mmtbx/command_line/cablam.py mmtbx/command_line/cablam_idealization.py mmtbx/command_line/cbetadev.py mmtbx/command_line/cc_star.py mmtbx/command_line/chiral_validation.py mmtbx/command_line/cif_as_mtz.py mmtbx/command_line/clashscore.py mmtbx/command_line/clashscore2.py mmtbx/command_line/comparama.py mmtbx/command_line/debug_riding.py mmtbx/command_line/density_modification.py mmtbx/command_line/development_aev.py mmtbx/command_line/development_fem.py mmtbx/command_line/distance_difference.py mmtbx/command_line/dynamics.py mmtbx/command_line/electrons.py mmtbx/command_line/emringer.py mmtbx/command_line/emringer_score.py mmtbx/command_line/estimate_bijvoet_ratio.py mmtbx/command_line/f000.py mmtbx/command_line/fab_elbow_angle.py mmtbx/command_line/fake_f_obs.py mmtbx/command_line/fetch_pdb.py mmtbx/command_line/find_peaks_holes.py mmtbx/command_line/find_residue_in_pdb.py mmtbx/command_line/find_tls_groups.py mmtbx/command_line/fmodel.py mmtbx/command_line/fobs_minus_fobs_map.py mmtbx/command_line/geometry_minimization.py mmtbx/command_line/grow_density.py mmtbx/command_line/hbond.py mmtbx/command_line/helix_sheet_recs_as_pdb_files.py mmtbx/command_line/holton_geometry_validation.py mmtbx/command_line/hydrogenate.py mmtbx/command_line/kinemage.py mmtbx/command_line/ligand_restraints_validation.py mmtbx/command_line/map_box.py mmtbx/command_line/map_comparison.py mmtbx/command_line/map_to_model_histogram.py mmtbx/command_line/map_to_structure_factors.py mmtbx/command_line/maps.py mmtbx/command_line/mask.py mmtbx/command_line/massage_data.py mmtbx/command_line/matthews.py mmtbx/command_line/maximum_entropy_map.py mmtbx/command_line/model_idealization.py mmtbx/command_line/model_map.py mmtbx/command_line/model_model_distances.py mmtbx/command_line/model_vs_data.py mmtbx/command_line/model_vs_map.py mmtbx/command_line/model_vs_sequence.py mmtbx/command_line/models_as_chains.py mmtbx/command_line/molprobity.py mmtbx/command_line/mon_lib_cif_triage.py mmtbx/command_line/mp_geo.py mmtbx/command_line/mp_validate_bonds.py mmtbx/command_line/mtz2map.py mmtbx/command_line/next_gen_atom_typing.py mmtbx/command_line/next_gen_residue_typing.py mmtbx/command_line/nonbonded_overlaps.py mmtbx/command_line/omegalyze.py mmtbx/command_line/pdb_atom_selection.py mmtbx/command_line/pdb_interpretation.py mmtbx/command_line/pdbtools.py mmtbx/command_line/perigee.py mmtbx/command_line/plan_sad_experiment.py mmtbx/command_line/polder.py mmtbx/command_line/prepare_pdb_deposition.py mmtbx/command_line/probe2.py mmtbx/command_line/probescore_ligand.py mmtbx/command_line/process_predicted_model.py mmtbx/command_line/prune_model.py mmtbx/command_line/quantum_interface.py mmtbx/command_line/r_factor_statistics.py mmtbx/command_line/rama_z.py mmtbx/command_line/ramalyze.py mmtbx/command_line/rank_scale_map.py mmtbx/command_line/real_space_correlation.py mmtbx/command_line/real_space_diff_map.py mmtbx/command_line/rebuild_cablam_cache.py mmtbx/command_line/rebuild_rotarama_cache.py mmtbx/command_line/reciprocal_space_arrays.py mmtbx/command_line/reduce2.py mmtbx/command_line/reduce_cryoem_resolution.py mmtbx/command_line/refine_anomalous_substructure.py mmtbx/command_line/remove_outliers.py mmtbx/command_line/ribbons.py mmtbx/command_line/rigid_bond_test.py mmtbx/command_line/ringer.py mmtbx/command_line/rna_validate.py mmtbx/command_line/rna_validate_bonds.py mmtbx/command_line/rna_validate_puckers.py mmtbx/command_line/rna_validate_suites.py mmtbx/command_line/rotalyze.py mmtbx/command_line/search_pdb_symmetry.py mmtbx/command_line/secondary_structure_restraints.py mmtbx/command_line/secondary_structure_validation.py mmtbx/command_line/select_best_starting_model.py mmtbx/command_line/show_r_factors_by_shell.py mmtbx/command_line/sisa.py mmtbx/command_line/sort_hetatms.py mmtbx/command_line/ss_idealization.py mmtbx/command_line/suitename.py mmtbx/command_line/suitename_old.py mmtbx/command_line/super.py mmtbx/command_line/superpose.py mmtbx/command_line/taam_minus_iam.py mmtbx/command_line/table_one.py mmtbx/command_line/tls.py mmtbx/command_line/tls_analysis.py mmtbx/command_line/tls_as_xyz.py mmtbx/command_line/undowser.py mmtbx/command_line/undowser2.py mmtbx/command_line/validate_H_cl_app.py mmtbx/command_line/validate_ligands.py mmtbx/command_line/validation_summary.py mmtbx/command_line/verify_mon_lib_data.py mmtbx/command_line/water_b_factors.py mmtbx/command_line/where_is_that_cif_file.py mmtbx/command_line/xmanip.py mmtbx/command_line/xtrapol8.py mmtbx/command_line/xtriage.py mmtbx/regression/ mmtbx/regression/command_line/ mmtbx/regression/command_line/tst_find_residue_in_pdb.py sent 730,779 bytes received 2,498 bytes 1,466,554.00 bytes/sec total size is 720,263 speedup is 0.98 building file list ... done sent 70 bytes received 12 bytes 164.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done rstbx/ rstbx/command_line/ rstbx/command_line/__init__.py rstbx/command_line/example_viewer.py rstbx/command_line/index.py rstbx/command_line/simage.create.py rstbx/command_line/simage.explore_completeness.py rstbx/command_line/simage.solver.py rstbx/command_line/simage.wx_display.py rstbx/command_line/slip_viewer.py rstbx/command_line/viewer.py sent 12,285 bytes received 193 bytes 24,956.00 bytes/sec total size is 11,139 speedup is 0.89 building file list ... done scitbx/ scitbx/command_line/ scitbx/command_line/__init__.py scitbx/command_line/apply_tapenade_hints.py scitbx/command_line/generate_error_h.py scitbx/command_line/histogram.py scitbx/command_line/show_exp_times.py scitbx/command_line/show_sizes.py scitbx/command_line/unicode_examples.py sent 11,851 bytes received 155 bytes 24,012.00 bytes/sec total size is 10,021 speedup is 0.83 building file list ... done sent 154 bytes received 12 bytes 332.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done smtbx/ smtbx/command_line/ smtbx/command_line/__init__.py smtbx/command_line/absolute_structure.py smtbx/command_line/anom_refine.py smtbx/command_line/benchmark_refinement.py smtbx/command_line/masks.py smtbx/command_line/refine.py sent 38,577 bytes received 136 bytes 77,426.00 bytes/sec total size is 37,436 speedup is 0.97 building file list ... done spotfinder/ spotfinder/command_line/ spotfinder/command_line/__init__.py spotfinder/command_line/find_active_area.py spotfinder/command_line/image_viewer.py spotfinder/command_line/mp_spotfinder_server_read_file.py spotfinder/command_line/signal_strength.py spotfinder/command_line/sweep_strength.py spotfinder/command_line/thin_client.py sent 23,567 bytes received 155 bytes 47,444.00 bytes/sec total size is 22,750 speedup is 0.96 building file list ... done sent 81 bytes received 12 bytes 186.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done wxtbx/ wxtbx/command_line/ wxtbx/command_line/__init__.py wxtbx/command_line/anomalous_differences_histogram.py wxtbx/command_line/b_plot.py wxtbx/command_line/inspect_r_free_flags.py wxtbx/command_line/loggraph.py wxtbx/command_line/pdb_editor.py wxtbx/command_line/pdb_statistics.py wxtbx/command_line/plan_sad_experiment.py wxtbx/command_line/plot_anomalous_scattering.py wxtbx/command_line/show_file_info.py wxtbx/command_line/wxpython.py wxtbx/command_line/xtriage.py sent 17,088 bytes received 250 bytes 34,676.00 bytes/sec total size is 16,108 speedup is 0.93 building file list ... done sent 157 bytes received 12 bytes 338.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done sent 242 bytes received 12 bytes 508.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done boost_adaptbx/graph/ boost_adaptbx/graph/tests/ boost_adaptbx/graph/tests/tst_graph.py boost_adaptbx/graph/tests/tst_graph_breadth_first_search.py boost_adaptbx/graph/tests/tst_graph_clustering_algorithm.py boost_adaptbx/graph/tests/tst_graph_connected_component_algorithm.py boost_adaptbx/graph/tests/tst_graph_graph_structure_comparison.py boost_adaptbx/graph/tests/tst_graph_maximum_clique.py boost_adaptbx/graph/tests/tst_graph_metric.py boost_adaptbx/graph/tests/tst_graph_min_cut_max_flow.py boost_adaptbx/graph/tests/tst_graph_minimum_cut_enumerate.py boost_adaptbx/graph/tests/tst_graph_utility.py boost_adaptbx/tests/ boost_adaptbx/tests/tst_boost_thread.py boost_adaptbx/tests/tst_char_array.py boost_adaptbx/tests/tst_deprecation_tools.py boost_adaptbx/tests/tst_libc_backtrace.py boost_adaptbx/tests/tst_optional.py boost_adaptbx/tests/tst_optional_copy.cpp boost_adaptbx/tests/tst_optional_copy.h boost_adaptbx/tests/tst_python_streambuf.py boost_adaptbx/tests/tst_rational.py boost_adaptbx/tests/tst_std_pair.py boost_adaptbx/tests/tst_stderr_stdout.py boost_adaptbx/tests/tst_stdin.py boost_adaptbx/tests/tst_stdout.py boost_adaptbx/tests/tst_string_representation.py boost_adaptbx/tests/tst_swig_args.py boost_adaptbx/tests/tst_tuple.py sent 91,617 bytes received 515 bytes 184,264.00 bytes/sec total size is 89,629 speedup is 0.97 building file list ... done cbflib_adaptbx/detectors/ cbflib_adaptbx/detectors/tst_memory.cpp sent 1,195 bytes received 34 bytes 2,458.00 bytes/sec total size is 967 speedup is 0.79 building file list ... done ccp4io_adaptbx/ ccp4io_adaptbx/tst.py ccp4io_adaptbx/dev/ ccp4io_adaptbx/dev/tst_fftlib.py sent 9,496 bytes received 60 bytes 19,112.00 bytes/sec total size is 9,204 speedup is 0.96 building file list ... done cctbx/adp_restraints/ cctbx/adp_restraints/tst_ext.py cctbx/adptbx/ cctbx/adptbx/boost_python/ cctbx/adptbx/boost_python/tst_adptbx.py cctbx/adptbx/boost_python/tst_hirshfeld.py cctbx/array_family/ cctbx/array_family/boost_python/ cctbx/array_family/boost_python/tst_flex.py cctbx/covariance/ cctbx/covariance/tests/ cctbx/covariance/tests/tst_covariance.py cctbx/crystal/ cctbx/crystal/tst_distance_based_connectivity.py cctbx/crystal/tst_ext.py cctbx/crystal/tst_super_cell.py cctbx/development/ cctbx/development/tst_cns_epsilon.py cctbx/development/tst_cns_hl.py cctbx/dispersion/ cctbx/dispersion/tests/ cctbx/dispersion/tests/tst_kramers_kronig.py cctbx/dispersion/tests/tst_kramers_kronig_helper.py cctbx/dispersion/tests/tst_kramers_kronig_optimize.py cctbx/dmtbx/ cctbx/dmtbx/boost_python/ cctbx/dmtbx/boost_python/tst_dmtbx.py cctbx/eltbx/ cctbx/eltbx/tests/ cctbx/eltbx/tests/tst_attenuation_coefficient.py cctbx/eltbx/tests/tst_chemical_elements.py cctbx/eltbx/tests/tst_covalent_radii.py cctbx/eltbx/tests/tst_formula.py cctbx/eltbx/tests/tst_henke.py cctbx/eltbx/tests/tst_icsd_radii.py cctbx/eltbx/tests/tst_neutron.py cctbx/eltbx/tests/tst_sasaki.py cctbx/eltbx/tests/tst_tiny_pse.py cctbx/eltbx/tests/tst_wavelengths.py cctbx/eltbx/tests/tst_xray_scattering.py cctbx/examples/ cctbx/examples/tst_exp_i_alpha_derivatives.py cctbx/examples/tst_g_exp_i_alpha_derivatives.py cctbx/examples/tst_phase_o_phrenia.py cctbx/examples/tst_space_subgroups.py cctbx/examples/tst_structure_factor_derivatives.py cctbx/examples/tst_structure_factor_derivatives_2.py cctbx/examples/tst_structure_factor_derivatives_3.py cctbx/examples/tst_structure_factor_derivatives_4.py cctbx/examples/merging/ cctbx/examples/merging/tst_permutations.py cctbx/geometry/ cctbx/geometry/tests/ cctbx/geometry/tests/tst_geometry.py cctbx/geometry_restraints/ cctbx/geometry_restraints/tst_angle_derivs.py cctbx/geometry_restraints/tst_ext.py cctbx/geometry_restraints/tst_motif.py cctbx/geometry_restraints/tst_process_nonbonded_proxies.py cctbx/geometry_restraints/tst_proxy_registry.py cctbx/maptbx/ cctbx/maptbx/tst_MapPeakLocator.py cctbx/maptbx/tst_asymmetric_map.py cctbx/maptbx/tst_atom_curves.py cctbx/maptbx/tst_atom_radius_as_central_peak_width.py cctbx/maptbx/tst_bcr.py cctbx/maptbx/tst_ccp.py cctbx/maptbx/tst_get_percentile_cutoffs.py cctbx/maptbx/tst_interpolation.py cctbx/maptbx/tst_interpolation_2.py cctbx/maptbx/tst_loft.py cctbx/maptbx/tst_map_peak_3d_as_2d.py cctbx/maptbx/tst_mask.py cctbx/maptbx/tst_peak_volume_estimate.py cctbx/maptbx/tst_qscore.py cctbx/maptbx/tst_real_space_refinement_simple.py cctbx/maptbx/tst_resolution_from_map_and_model.py cctbx/maptbx/tst_target_and_gradients.py cctbx/maptbx/bcr/ cctbx/maptbx/bcr/tst_adp_refine.py cctbx/maptbx/bcr/tst_example.py cctbx/maptbx/bcr/tst_qmap_02.py cctbx/maptbx/bcr/tst_table.py cctbx/maptbx/bcr/tst_two_atoms.py cctbx/maptbx/bcr/tst_vrm.py cctbx/maptbx/bcr/tst_vrm2.py cctbx/maptbx/boost_python/ cctbx/maptbx/boost_python/tst_maptbx.py cctbx/masks/ cctbx/masks/tests/ cctbx/masks/tests/tst_flood_fill.py cctbx/math/ cctbx/math/boost_python/ cctbx/math/boost_python/tst_math.py cctbx/miller/ cctbx/miller/tst_map_to_asu_isym.py cctbx/miller/tst_reindexing.py cctbx/miller/boost_python/ cctbx/miller/boost_python/tst_miller.py cctbx/multipolar/ cctbx/multipolar/regression/ cctbx/multipolar/regression/tst_multipolar.py cctbx/omz/ cctbx/omz/tst_bfgs.py cctbx/omz/tst_cod.csh cctbx/omz/tst_dev.py cctbx/regression/ cctbx/regression/tst_adp_aniso_restraints.py cctbx/regression/tst_adp_constraints.py cctbx/regression/tst_adp_constraints_cartesian.py cctbx/regression/tst_amplitude_normalisation.py cctbx/regression/tst_change_basis.py cctbx/regression/tst_connectivity.py cctbx/regression/tst_connectivity_allsym.py cctbx/regression/tst_coordination_sequences.py cctbx/regression/tst_create_models_or_maps.py cctbx/regression/tst_crystal.py cctbx/regression/tst_crystal_asu_clusters.py cctbx/regression/tst_crystal_close_packing.py cctbx/regression/tst_diffuse.py cctbx/regression/tst_direct_scaling.py cctbx/regression/tst_direct_space_asu.py cctbx/regression/tst_emma.py cctbx/regression/tst_expand_to_p1.py cctbx/regression/tst_f_model.py cctbx/regression/tst_fast_nv1995.py cctbx/regression/tst_fcalc_fft_stability.py cctbx/regression/tst_find_best_cell.py cctbx/regression/tst_fourier_transform_real_part_at_x.py cctbx/regression/tst_french_wilson.py cctbx/regression/tst_geometry_restraints.py cctbx/regression/tst_geometry_restraints_2.py cctbx/regression/tst_geometry_restraints_lbfgs.py cctbx/regression/tst_grm_modifications.py cctbx/regression/tst_grm_modifications_rm.py cctbx/regression/tst_grm_pickling.py cctbx/regression/tst_grouped_data.py cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py cctbx/regression/tst_krivy_gruber.py cctbx/regression/tst_loc_res.py cctbx/regression/tst_map_is_periodic.py cctbx/regression/tst_map_weights_for_symmetry_summation.py cctbx/regression/tst_maptbx_box.py cctbx/regression/tst_maptbx_mask.py cctbx/regression/tst_maptbx_structure_factors.py cctbx/regression/tst_match_bijvoet_mates.py cctbx/regression/tst_math_module.py cctbx/regression/tst_mem.py cctbx/regression/tst_mem_2.py cctbx/regression/tst_miller.py cctbx/regression/tst_miller_data_manipulation.py cctbx/regression/tst_miller_double_step_filtration.py cctbx/regression/tst_miller_fft_map.py cctbx/regression/tst_miller_lookup_utils.py cctbx/regression/tst_miller_merge_equivalents.py cctbx/regression/tst_miller_statistics.py cctbx/regression/tst_niggli_reduction_cpp.py cctbx/regression/tst_pair_asu_table.py cctbx/regression/tst_pointgroup_tools.py cctbx/regression/tst_prepare_map_for_docking.py cctbx/regression/tst_r_free_utils.py cctbx/regression/tst_reciprocal_space_asu.py cctbx/regression/tst_refine_xray_curvs.py cctbx/regression/tst_reflection_statistics.py cctbx/regression/tst_sampled_model_density.py cctbx/regression/tst_sf_low_res_accuracy.py cctbx/regression/tst_sgtbx.py cctbx/regression/tst_sgtbx_denominators.py cctbx/regression/tst_sgtbx_harker.py cctbx/regression/tst_sgtbx_lattice_symmetry.py cctbx/regression/tst_sgtbx_site_constraints.py cctbx/regression/tst_sgtbx_special_op_simplifier.py cctbx/regression/tst_sgtbx_subgroups.py cctbx/regression/tst_sgtbx_tidy_pickling.py cctbx/regression/tst_show_cosets.py cctbx/regression/tst_space_group_type_tidy_cb_op_t.py cctbx/regression/tst_sphericity.py cctbx/regression/tst_statistics_graphs.py cctbx/regression/tst_triplet_generator.py cctbx/regression/tst_twin_target.py cctbx/regression/tst_wavelength_units.py cctbx/regression/tst_web_change_basis.py cctbx/regression/tst_weighting_schemes.py cctbx/regression/tst_wilson_plot.py cctbx/regression/tst_xray.py cctbx/regression/tst_xray_derivatives.py cctbx/regression/tst_xray_fast_gradients.py cctbx/regression/tst_xray_minimization.py cctbx/regression/tst_xray_minimization_failure.py cctbx/regression/tst_xray_target_functors.py cctbx/sgtbx/ cctbx/sgtbx/boost_python/ cctbx/sgtbx/boost_python/tst_N_fold_rot.py cctbx/sgtbx/boost_python/tst_sgtbx.py cctbx/sgtbx/direct_space_asu/ cctbx/sgtbx/direct_space_asu/proto/ cctbx/sgtbx/direct_space_asu/proto/tst_asu.cpp cctbx/sgtbx/direct_space_asu/proto/tst_asu.py cctbx/symmetry_search/ cctbx/symmetry_search/tests/ cctbx/symmetry_search/tests/tst_from_map.py cctbx/symmetry_search/tests/tst_goodness_of_symmetry.py cctbx/translation_search/ cctbx/translation_search/boost_python/ cctbx/translation_search/boost_python/tst_translation_search.py cctbx/uctbx/ cctbx/uctbx/boost_python/ cctbx/uctbx/boost_python/tst_crystal_orientation.py cctbx/uctbx/boost_python/tst_uctbx.py cctbx/uctbx/lrl/ cctbx/uctbx/lrl/tst_match_lattices.py cctbx/xray/ cctbx/xray/boost_python/ cctbx/xray/boost_python/tst_f_model.py cctbx/xray/boost_python/tst_targets_fd.py cctbx/xray/boost_python/tst_xray.py cctbx/xray/observations/ cctbx/xray/observations/tst_observations.py cctbx/xray/targets/ cctbx/xray/targets/tst_r1.py cctbx/xray/targets/tst_shelxl_wght_ls.py sent 2,132,717 bytes received 3,447 bytes 4,272,328.00 bytes/sec total size is 2,118,404 speedup is 0.99 building file list ... done cma_es/ cma_es/tst_cma_es.py sent 3,163 bytes received 38 bytes 6,402.00 bytes/sec total size is 3,008 speedup is 0.94 building file list ... done crys3d/regression/ crys3d/regression/tst_HKLviewerOSbrowserBinFSigF.py crys3d/regression/tst_HKLviewerOSbrowserSliceK-9.py crys3d/regression/tst_HKLviewerQtGuiBinFSigF.py crys3d/regression/tst_HKLviewerQtGuiSliceK-9.py crys3d/regression/tst_hklinfo.py crys3d/regression/tst_origarrays_from_cif.py crys3d/regression/tst_websocket.py sent 47,909 bytes received 148 bytes 96,114.00 bytes/sec total size is 47,205 speedup is 0.98 building file list ... done sent 595 bytes received 12 bytes 1,214.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done fable/tst_cout.py fable/tst_cout_compile.py fable/tst_equivalence.py fable/tst_ext.py fable/tst_read.py fable/test/ fable/test/tst_command_line.py fable/test/tst_io.py fable/test/tst_separate_files.py fable/test/tst_show_calls.py sent 152,770 bytes received 186 bytes 305,912.00 bytes/sec total size is 151,869 speedup is 0.99 building file list ... done gltbx/tst.py gltbx/tst_ellipsoids.py gltbx/tst_fonts.py gltbx/tst_viewer_utils.py sent 8,480 bytes received 88 bytes 17,136.00 bytes/sec total size is 8,108 speedup is 0.95 building file list ... done iotbx/bioinformatics/ iotbx/bioinformatics/test/ iotbx/bioinformatics/test/tst_alignment_as_hsearch.py iotbx/bioinformatics/test/tst_ebi_wu_blast_xml.py iotbx/bioinformatics/test/tst_local_blast.py iotbx/bioinformatics/test/tst_ncbi_blast_xml.py iotbx/ccp4_map/ iotbx/ccp4_map/tst.py iotbx/ccp4_map/tst_input.map iotbx/cif/ iotbx/cif/tests/ iotbx/cif/tests/tst_citations.py iotbx/cif/tests/tst_cod.py iotbx/cif/tests/tst_crystal_symmetry_builder.py iotbx/cif/tests/tst_geometry.py iotbx/cif/tests/tst_lex_parse_build.py iotbx/cif/tests/tst_miller_array_builder.py iotbx/cif/tests/tst_model.py iotbx/cif/tests/tst_model_builder.py iotbx/cif/tests/tst_parser.py iotbx/cif/tests/tst_restraints.py iotbx/cif/tests/tst_ucif_examples_compilation.py iotbx/cif/tests/tst_validation.py iotbx/cns/ iotbx/cns/tst_cns.py iotbx/detectors/ iotbx/detectors/tst_adsc.py iotbx/detectors/tst_cbf_comp_read_meth.py iotbx/detectors/tst_debug_write.py iotbx/detectors/tst_detectors.py iotbx/detectors/tst_py_cbf.py iotbx/dsn6/ iotbx/dsn6/tst.py iotbx/examples/ iotbx/examples/tst_mtz_free_flipper.py iotbx/examples/pdb_truncate_to_ala/ iotbx/examples/pdb_truncate_to_ala/tst.py iotbx/gui_tools/ iotbx/gui_tools/tst.py iotbx/kriber/ iotbx/kriber/tst_strudat.py iotbx/mtz/ iotbx/mtz/tst.py iotbx/mtz/tst_dano.py iotbx/mtz/tst_ext.py iotbx/mtz/tst_extract_from_symmetry_lib.py iotbx/mtz/tst_miller_dict.py iotbx/mtz/tst_unmerged.py iotbx/pdb/ iotbx/pdb/tst_atom_name_interpretation.py iotbx/pdb/tst_atom_selection.py iotbx/pdb/tst_atom_selection_string.py iotbx/pdb/tst_ext.py iotbx/pdb/tst_extract_rfactors_resolutions_sigma.py iotbx/pdb/tst_hierarchy.py iotbx/pdb/tst_hierarchy_atom_sort.py iotbx/pdb/tst_hierarchy_flip_symmetric.py iotbx/pdb/tst_hierarchy_flip_symmetric_2.py iotbx/pdb/tst_input_pickling.py iotbx/pdb/tst_mmcif.py iotbx/pdb/tst_mmcif_hierarchy.py iotbx/pdb/tst_mmcif_hierarchy_2.py iotbx/pdb/tst_pdb.py iotbx/pdb/tst_read_mtrix_records_from_cif.py iotbx/pdb/tst_rna_dna_atom_names.py iotbx/pdb/tst_secondary_structure.py iotbx/pdb/tst_secondary_structure_2.py iotbx/pdb/tst_tls.py iotbx/pdb/tst_utils.py iotbx/pdb/remediation/ iotbx/pdb/remediation/tst_remediator.py iotbx/regression/ iotbx/regression/tst_add_conformations.py iotbx/regression/tst_all_chain_ids.py iotbx/regression/tst_atom_selections_10k.py iotbx/regression/tst_bioinformatics.py iotbx/regression/tst_box_around_molecule.py iotbx/regression/tst_cif_1.py iotbx/regression/tst_cif_as_pdb_1atom.py iotbx/regression/tst_cli_parser.py iotbx/regression/tst_crystal_symmetry_from_any.py iotbx/regression/tst_csv_utils.py iotbx/regression/tst_data_manager.py iotbx/regression/tst_data_plots.py iotbx/regression/tst_examples.py iotbx/regression/tst_export_scalepack_unmerged.py iotbx/regression/tst_extract_xtal_data.py iotbx/regression/tst_fetch.py iotbx/regression/tst_file_io.py iotbx/regression/tst_file_reader.py iotbx/regression/tst_generate_n_char_string.py iotbx/regression/tst_group_rounding.py iotbx/regression/tst_hierarchy_altlocs.py iotbx/regression/tst_hierarchy_copy_select.py iotbx/regression/tst_hierarchy_forward_compatible_pdb.py iotbx/regression/tst_hierarchy_id_str.py iotbx/regression/tst_hierarchy_long_chain_ids_1.py iotbx/regression/tst_hierarchy_long_resname_1.py iotbx/regression/tst_hierarchy_long_resname_2.py iotbx/regression/tst_hierarchy_long_resname_3.py iotbx/regression/tst_hierarchy_long_resname_4.py iotbx/regression/tst_hierarchy_merge_atoms_at_end_to_residues.py iotbx/regression/tst_hierarchy_occupancies_rounding.py iotbx/regression/tst_hierarchy_pdb_v3.py iotbx/regression/tst_lattice_symmetry.py iotbx/regression/tst_map_manager.py iotbx/regression/tst_map_manager_2.py iotbx/regression/tst_map_manager_wrapping.py iotbx/regression/tst_map_model_manager.py iotbx/regression/tst_map_model_manager_2.py iotbx/regression/tst_map_model_manager_3.py iotbx/regression/tst_map_model_manager_4.py iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry.py iotbx/regression/tst_map_model_manager_9_remove_origin_shift_and_unit_cell_crystal_symmetry_cif.py iotbx/regression/tst_map_model_manager_call_consistency.py iotbx/regression/tst_map_model_manager_cif.py iotbx/regression/tst_map_model_manager_external_sharpening_7.py iotbx/regression/tst_map_model_manager_half_map_sharpening_6.py iotbx/regression/tst_map_model_manager_local_resolution_10.py iotbx/regression/tst_map_model_manager_model_sharpening_5.py iotbx/regression/tst_map_model_manager_model_sharpening_5_cif.py iotbx/regression/tst_map_model_manager_tls_from_map_8.py iotbx/regression/tst_map_tools.py iotbx/regression/tst_merging_statistics.py iotbx/regression/tst_miller_sort_asu.py iotbx/regression/tst_mmcif_input.py iotbx/regression/tst_mmcif_multimodel.py iotbx/regression/tst_mmcif_segids.py iotbx/regression/tst_mmcif_to_from_hierarchy.py iotbx/regression/tst_mrc_io.py iotbx/regression/tst_mtz_as_cif.py iotbx/regression/tst_patterson.py iotbx/regression/tst_pdb_as_cif.py iotbx/regression/tst_pdb_as_fasta.py iotbx/regression/tst_pdb_cif_cells.py iotbx/regression/tst_pdb_cif_inputs.py iotbx/regression/tst_pdb_link_records.py iotbx/regression/tst_pdbx_mmcif_tutorial.py iotbx/regression/tst_phases.py iotbx/regression/tst_phil.py iotbx/regression/tst_poscar.py iotbx/regression/tst_reflection_file_editor.py iotbx/regression/tst_reflection_file_reader.py iotbx/regression/tst_reflection_file_utils.py iotbx/regression/tst_reflection_statistics.py iotbx/regression/tst_reindex.py iotbx/regression/tst_restraints_merge.py iotbx/regression/tst_selected_hierarchy_flip.py iotbx/regression/tst_show_systematic_absences.py iotbx/regression/tst_simple_map_coefficients.py iotbx/regression/tst_simple_parser.py iotbx/regression/tst_sort_atoms.py iotbx/regression/tst_split_data_cif.py iotbx/regression/tst_split_models.py iotbx/regression/tst_symmetry.py iotbx/regression/tst_text_detection.py iotbx/regression/tst_wildcard.py iotbx/regression/tst_xray_scale.py iotbx/regression/ncs/ iotbx/regression/ncs/tst_mmcif_biomt_reduction_output.py iotbx/regression/ncs/tst_mtrix_biomt_cmdl.py iotbx/regression/ncs/tst_ncs.py iotbx/regression/ncs/tst_ncs_groups_preprocessing.py iotbx/regression/ncs/tst_ncs_input.py iotbx/regression/ncs/tst_ncs_input_preserves_iseqs.py iotbx/regression/ncs/tst_ncs_reordered_chains.py iotbx/regression/ncs/tst_ncs_search_broken_chain.py iotbx/regression/ncs/tst_ncs_search_ligs.py iotbx/regression/ncs/tst_ncs_search_shortcut_1.py iotbx/regression/ncs/tst_ncs_user_selections.py iotbx/regression/ncs/tst_ncs_without_validation.py iotbx/regression/secondary_structure/ iotbx/regression/secondary_structure/tst_annotation.py iotbx/regression/secondary_structure/tst_annotation_long.py iotbx/regression/secondary_structure/tst_sheet.py iotbx/scalepack/ iotbx/scalepack/tst_merge.py iotbx/scalepack/tst_no_merge_original_index.py iotbx/shelx/ iotbx/shelx/tst_fvar_encoding.py iotbx/shelx/tst_hklf.py iotbx/shelx/tst_lex_parse_build.py iotbx/shelx/tst_writer.py iotbx/xds/ iotbx/xds/tests/ iotbx/xds/tests/tst_integrate_hkl.py iotbx/xds/tests/tst_spots_xds.py iotbx/xds/tests/tst_xds_inp.py iotbx/xds/tests/tst_xparm.py iotbx/xplor/ iotbx/xplor/tst_xplormap.py sent 2,626,967 bytes received 3,277 bytes 1,753,496.00 bytes/sec total size is 2,614,058 speedup is 0.99 building file list ... done libtbx/tst_add_docstrings_with_ai.py libtbx/tst_binary_search.py libtbx/tst_citation_encoding.py libtbx/tst_citations.py libtbx/tst_conda_dispatcher.py libtbx/tst_containers.py libtbx/tst_dlite.py libtbx/tst_easy_mp.py libtbx/tst_easy_mp_multicore.py libtbx/tst_easy_mp_state.py libtbx/tst_easy_pickle.py libtbx/tst_find_unused_imports.py libtbx/tst_fully_buffered_timeout.py libtbx/tst_guided_coding.py libtbx/tst_mahalanobis.py libtbx/tst_math_utils.py libtbx/tst_object_oriented_patterns.py libtbx/tst_path.py libtbx/tst_program_template.py libtbx/tst_python_code_parsing.py libtbx/tst_representation.py libtbx/tst_run_tests_parallel_retry.py libtbx/tst_run_tests_parallel_unique_dirs.py libtbx/tst_runtime_utils.py libtbx/tst_scheduling.py libtbx/tst_str_utils.py libtbx/tst_t96_roster.py libtbx/tst_thread_utils.py libtbx/tst_topological_sort.py libtbx/tst_utils.py libtbx/tst_version.py libtbx/tst_word_index_generator.py libtbx/tst_xmlrpc_utils.py libtbx/guided_coding/ libtbx/guided_coding/tests/ libtbx/guided_coding/tests/tst_review_bundle_v20.py libtbx/guided_coding/tests/tst_screen_check_v20.py libtbx/jobs/ libtbx/jobs/tst_batch.py libtbx/jobs/tst_local.py libtbx/jobs/tst_manager.py libtbx/jobs/tst_slurm.py libtbx/langchain/ libtbx/langchain/agent/ libtbx/langchain/agent/tst_agent_enhancements.py libtbx/langchain/tests/ libtbx/langchain/tests/tst_abort_message_all_stops.py libtbx/langchain/tests/tst_action_item_1.py libtbx/langchain/tests/tst_advice_preprocessing.py libtbx/langchain/tests/tst_after_program_fill_from_raw.py libtbx/langchain/tests/tst_after_program_prompt.py libtbx/langchain/tests/tst_agent_build_info.py libtbx/langchain/tests/tst_analysis_request.py libtbx/langchain/tests/tst_api_schema.py libtbx/langchain/tests/tst_audit_fixes.py libtbx/langchain/tests/tst_autobuild_hl_recovery.py libtbx/langchain/tests/tst_autobuild_sequence_waiver.py libtbx/langchain/tests/tst_autosol_bugs.py libtbx/langchain/tests/tst_backward_compat.py libtbx/langchain/tests/tst_best_files_tracker.py libtbx/langchain/tests/tst_build_experiment_type_and_rfree.py libtbx/langchain/tests/tst_canary.py libtbx/langchain/tests/tst_cc_key_extraction.py libtbx/langchain/tests/tst_classify_mtz_type_001.py libtbx/langchain/tests/tst_command_builder.py libtbx/langchain/tests/tst_contract_compliance.py libtbx/langchain/tests/tst_copies_tracking.py libtbx/langchain/tests/tst_cryoem_metric_evaluator_validation.py libtbx/langchain/tests/tst_cryoem_stop_validation.py libtbx/langchain/tests/tst_data_input_filter.py libtbx/langchain/tests/tst_decision_flow.py libtbx/langchain/tests/tst_default_models.py libtbx/langchain/tests/tst_density_modify_experiment_type.py libtbx/langchain/tests/tst_dependencies.py libtbx/langchain/tests/tst_diagnosed_failure_stop.py libtbx/langchain/tests/tst_diagnostic_messages.py libtbx/langchain/tests/tst_directive_extractor.py libtbx/langchain/tests/tst_directive_extractor_behavior_regression.py libtbx/langchain/tests/tst_directive_extractor_grounding.py libtbx/langchain/tests/tst_directive_extractor_sentinel_space_group.py libtbx/langchain/tests/tst_directive_layer_diagnostics.py libtbx/langchain/tests/tst_directive_validation.py libtbx/langchain/tests/tst_directive_validator.py libtbx/langchain/tests/tst_directive_validator_typo_hints.py libtbx/langchain/tests/tst_directives_integration.py libtbx/langchain/tests/tst_display_data_model.py libtbx/langchain/tests/tst_dock_and_stop.py libtbx/langchain/tests/tst_docs_tools.py libtbx/langchain/tests/tst_dry_run.py libtbx/langchain/tests/tst_error_analyzer.py libtbx/langchain/tests/tst_error_classifier.py libtbx/langchain/tests/tst_event_formatter_file_categories.py libtbx/langchain/tests/tst_event_system.py libtbx/langchain/tests/tst_explanation_prompts.py libtbx/langchain/tests/tst_extended_stop_phrasings.py libtbx/langchain/tests/tst_extract_raw_advice.py libtbx/langchain/tests/tst_extraction_failure_visibility.py libtbx/langchain/tests/tst_fabricated_stop_condition.py libtbx/langchain/tests/tst_file_categorization.py libtbx/langchain/tests/tst_file_categorizer.py libtbx/langchain/tests/tst_file_encoding.py libtbx/langchain/tests/tst_file_utils.py libtbx/langchain/tests/tst_fix_verification.py libtbx/langchain/tests/tst_force_no_ai_server.py libtbx/langchain/tests/tst_gate_evaluator.py libtbx/langchain/tests/tst_general_resolver.py libtbx/langchain/tests/tst_grounding_stop_after_requested.py libtbx/langchain/tests/tst_h17_strip_executor.py libtbx/langchain/tests/tst_h18_1_phil_roundtrip.py libtbx/langchain/tests/tst_halfmap_sigmaa_inventory.py libtbx/langchain/tests/tst_hardcoded_cleanup.py libtbx/langchain/tests/tst_history_analysis.py libtbx/langchain/tests/tst_hypothesis_evaluator.py libtbx/langchain/tests/tst_initialize_plan_smoke.py libtbx/langchain/tests/tst_input_mtz_has_rfree_plumbing.py libtbx/langchain/tests/tst_integration.py libtbx/langchain/tests/tst_intent_classifier.py libtbx/langchain/tests/tst_langchain_tools.py libtbx/langchain/tests/tst_ligand_workflow_restart.py libtbx/langchain/tests/tst_ligandfit_patterns.py libtbx/langchain/tests/tst_llm_unavailable_notice.py libtbx/langchain/tests/tst_log_extractor.py libtbx/langchain/tests/tst_log_structure_extractor.py libtbx/langchain/tests/tst_metric_patterns.py libtbx/langchain/tests/tst_metrics_analyzer.py libtbx/langchain/tests/tst_mode_isolation.py libtbx/langchain/tests/tst_mtz_crosscheck.py libtbx/langchain/tests/tst_mtz_phases_session_blocking.py libtbx/langchain/tests/tst_n_bugs.py libtbx/langchain/tests/tst_new_programs.py libtbx/langchain/tests/tst_obs_labels_auto_fill.py libtbx/langchain/tests/tst_old_client_compat.py libtbx/langchain/tests/tst_optional_dep_resilience.py libtbx/langchain/tests/tst_pattern_manager.py libtbx/langchain/tests/tst_perceive_stop_checks.py libtbx/langchain/tests/tst_phase0_static_audit.py libtbx/langchain/tests/tst_phase1_contract_gaps.py libtbx/langchain/tests/tst_phase2_path_consistency.py libtbx/langchain/tests/tst_phase2b_activation.py libtbx/langchain/tests/tst_phase3_bug5.py libtbx/langchain/tests/tst_phase3_serialization_symmetry.py libtbx/langchain/tests/tst_phase3d_motivating_tutorial.py libtbx/langchain/tests/tst_phase4_history_flags.py libtbx/langchain/tests/tst_phase5_error_classification.py libtbx/langchain/tests/tst_phase6_category_consumer.py libtbx/langchain/tests/tst_phase7_routing_simulation.py libtbx/langchain/tests/tst_phase8_command_building.py libtbx/langchain/tests/tst_phase9_llm_perturbation.py libtbx/langchain/tests/tst_phaser_multimodel.py libtbx/langchain/tests/tst_phil_namespace_cleaner.py libtbx/langchain/tests/tst_phil_validation.py libtbx/langchain/tests/tst_placement_skip_rebuild.py libtbx/langchain/tests/tst_plan_autostop_validation_suppression.py libtbx/langchain/tests/tst_plan_catchup_failure_semantics.py libtbx/langchain/tests/tst_plan_generator.py libtbx/langchain/tests/tst_plan_lead_program_offer.py libtbx/langchain/tests/tst_plan_schema.py libtbx/langchain/tests/tst_planning_framework.py libtbx/langchain/tests/tst_portkey_embedding_model.py libtbx/langchain/tests/tst_predict_and_build_no_ncs.py libtbx/langchain/tests/tst_preprocessor_file_override.py libtbx/langchain/tests/tst_program_identity.py libtbx/langchain/tests/tst_program_registration.py libtbx/langchain/tests/tst_program_requirements.py libtbx/langchain/tests/tst_protocol_version.py libtbx/langchain/tests/tst_provider_error_classification.py libtbx/langchain/tests/tst_provider_lock.py libtbx/langchain/tests/tst_raw_advice_scanner.py libtbx/langchain/tests/tst_reactive_deviation_hold.py libtbx/langchain/tests/tst_reasoning_command_divergence.py libtbx/langchain/tests/tst_rebuild_template_selection.py libtbx/langchain/tests/tst_refine_final_rfree.py libtbx/langchain/tests/tst_report_verifier.py libtbx/langchain/tests/tst_resolve_cryo_em_ncs_inject.py libtbx/langchain/tests/tst_resume_reopen_stages.py libtbx/langchain/tests/tst_rfree_flags_missing.py libtbx/langchain/tests/tst_rfree_generate_guard.py libtbx/langchain/tests/tst_rfree_lock_reconciliation.py libtbx/langchain/tests/tst_rfree_resolution_stop.py libtbx/langchain/tests/tst_safe_float_consolidation.py libtbx/langchain/tests/tst_sanity_checker.py libtbx/langchain/tests/tst_scenario_tracer.py libtbx/langchain/tests/tst_sequence_only_routing.py libtbx/langchain/tests/tst_session_directives.py libtbx/langchain/tests/tst_session_summary.py libtbx/langchain/tests/tst_session_tools.py libtbx/langchain/tests/tst_settings_list_coercion.py libtbx/langchain/tests/tst_shared_code_imports.py libtbx/langchain/tests/tst_silent_stop_abort_messages.py libtbx/langchain/tests/tst_simple_extractor_validation.py libtbx/langchain/tests/tst_skip_promotion.py libtbx/langchain/tests/tst_skip_to_program.py libtbx/langchain/tests/tst_solve_action_keywords.py libtbx/langchain/tests/tst_space_group_validation.py libtbx/langchain/tests/tst_spurious_stop_after_requested.py libtbx/langchain/tests/tst_standalone_consistency.py libtbx/langchain/tests/tst_state_serialization.py libtbx/langchain/tests/tst_step1f_single_emit.py libtbx/langchain/tests/tst_stop_condition_false_positive.py libtbx/langchain/tests/tst_stop_condition_fix.py libtbx/langchain/tests/tst_stop_feedback_api_plan_command.py libtbx/langchain/tests/tst_stop_reason_codes.py libtbx/langchain/tests/tst_stop_reason_prompt.py libtbx/langchain/tests/tst_strategy_memory.py libtbx/langchain/tests/tst_structure_model.py libtbx/langchain/tests/tst_summary_display.py libtbx/langchain/tests/tst_summary_file.py libtbx/langchain/tests/tst_supported_providers_single_source.py libtbx/langchain/tests/tst_template.py libtbx/langchain/tests/tst_thinking_agent.py libtbx/langchain/tests/tst_thinking_defense.py libtbx/langchain/tests/tst_transport.py libtbx/langchain/tests/tst_transport_surfaces.py libtbx/langchain/tests/tst_user_advice_filter.py libtbx/langchain/tests/tst_utils.py libtbx/langchain/tests/tst_v112_13_fixes.py libtbx/langchain/tests/tst_v120_providers.py libtbx/langchain/tests/tst_validate_file_overrides.py libtbx/langchain/tests/tst_validate_step_after_program_guard.py libtbx/langchain/tests/tst_validation_history.py libtbx/langchain/tests/tst_workflow_complete_stop.py libtbx/langchain/tests/tst_workflow_state.py libtbx/langchain/tests/tst_yaml_config.py libtbx/langchain/tests/tst_yaml_tools.py libtbx/langchain/tests/llm/ libtbx/langchain/tests/llm/tst_a1_extractor_smoke.py libtbx/langchain/tests/llm/tst_b1_stop_after_requested.py libtbx/langchain/tests/llm/tst_b2_gated_wipe_planning.py libtbx/langchain/tests/llm/tst_c1_raw_authority.py libtbx/langchain/tests/llm/tst_directive_extraction.py libtbx/langchain/tests/llm/tst_framework_self.py libtbx/langchain/tests/llm/tst_planning.py libtbx/phil/ libtbx/phil/tst.py libtbx/phil/tst_experimental.py libtbx/phil/tst_interface.py libtbx/phil/tst_tokenizer.py libtbx/queuing_system_utils/ libtbx/queuing_system_utils/tst.py sent 4,455,406 bytes received 4,413 bytes 8,919,638.00 bytes/sec total size is 4,436,722 speedup is 0.99 building file list ... done mmtbx/atomic_environment_vectors/ mmtbx/atomic_environment_vectors/tst.py mmtbx/building/ mmtbx/building/tst_extend_sidechains.py mmtbx/building/tst_extend_sidechains_2.py mmtbx/building/ligands/ mmtbx/building/ligands/tst_00.py mmtbx/building/ligands/tst_00_mmtbx_building_ligands.map mmtbx/bulk_solvent/ mmtbx/bulk_solvent/tst_aniso_scaler.py mmtbx/bulk_solvent/tst_bulk_solvent_and_scaling.py mmtbx/bulk_solvent/tst_fit_kexpb_to_ktotal.py mmtbx/bulk_solvent/tst_flat_nonuniform.py mmtbx/bulk_solvent/tst_kb_sol_u_star_fd.py mmtbx/bulk_solvent/tst_mosaic.py mmtbx/bulk_solvent/tst_scaler.py mmtbx/chemical_components/ mmtbx/chemical_components/tst.py mmtbx/conformation_dependent_library/ mmtbx/conformation_dependent_library/tst_cdl.py mmtbx/conformation_dependent_library/tst_cdl_esd.py mmtbx/conformation_dependent_library/tst_cdl_nucleotides.py mmtbx/conformation_dependent_library/tst_cis_c_n_ca.py mmtbx/conformation_dependent_library/tst_enol_peptide.py mmtbx/conformation_dependent_library/tst_hpdl.py mmtbx/conformation_dependent_library/tst_mcl_01.py mmtbx/conformation_dependent_library/tst_mcl_02.py mmtbx/conformation_dependent_library/tst_mcl_03.py mmtbx/conformation_dependent_library/tst_multi_residue_rna.py mmtbx/conformation_dependent_library/tst_mutli_residue.py mmtbx/conformation_dependent_library/tst_omega_cdl.py mmtbx/conformation_dependent_library/tst_pH_mechanism.py mmtbx/conformation_dependent_library/tst_poly_ca_multi_residue.py mmtbx/conformation_dependent_library/tst_rdl.py mmtbx/conformation_dependent_library/tst_rna_dna_fragments.py mmtbx/density_modification/ mmtbx/density_modification/tst_density_modification.py mmtbx/disorder/ mmtbx/disorder/tst.py mmtbx/disorder/tst_analyze_model.py mmtbx/disorder/tst_backbone.py mmtbx/dynamics/ mmtbx/dynamics/tst_cartesian_dynamics.py mmtbx/dynamics/tst_sa.py mmtbx/geometry/ mmtbx/geometry/tests/ mmtbx/geometry/tests/tst_altloc.py mmtbx/geometry/tests/tst_asa.py mmtbx/geometry/tests/tst_clash.py mmtbx/geometry/tests/tst_indexing.py mmtbx/geometry/tests/tst_shared_types.py mmtbx/geometry/tests/tst_sphere_surface_sampling.py mmtbx/geometry/tests/tst_topology.py mmtbx/geometry_restraints/ mmtbx/geometry_restraints/tst_c_beta_restraints.py mmtbx/geometry_restraints/tst_geo_file_parsing.py mmtbx/geometry_restraints/tst_manager.py mmtbx/geometry_restraints/tst_orca_manager.py mmtbx/geometry_restraints/tst_ramachandran.py mmtbx/geometry_restraints/tst_reference_coordinate.py mmtbx/geometry_restraints/tst_reference_coordinate2.py mmtbx/geometry_restraints/tst_replace_in_place.py mmtbx/geometry_restraints/tst_xtb_manager.py mmtbx/geometry_restraints/torsion_restraints/ mmtbx/geometry_restraints/torsion_restraints/tst_reference_hbond.py mmtbx/geometry_restraints/torsion_restraints/tst_reference_model.py mmtbx/geometry_restraints/torsion_restraints/tst_reference_model_ligands.py mmtbx/geometry_restraints/torsion_restraints/tst_reference_ramachandran.py mmtbx/geometry_restraints/torsion_restraints/tst_ter_records.py mmtbx/geometry_restraints/torsion_restraints/tst_torsion_ncs.py mmtbx/hydrogens/ mmtbx/hydrogens/tst.py mmtbx/hydrogens/tst_add_hydrogen.py mmtbx/hydrogens/tst_add_hydrogen_1.py mmtbx/hydrogens/tst_add_hydrogen_10.py mmtbx/hydrogens/tst_add_hydrogen_11.py mmtbx/hydrogens/tst_add_hydrogen_12.py mmtbx/hydrogens/tst_add_hydrogen_13.py mmtbx/hydrogens/tst_add_hydrogen_14.py mmtbx/hydrogens/tst_add_hydrogen_15.py mmtbx/hydrogens/tst_add_hydrogen_16.py mmtbx/hydrogens/tst_add_hydrogen_2.py mmtbx/hydrogens/tst_add_hydrogen_3.py mmtbx/hydrogens/tst_add_hydrogen_4.py mmtbx/hydrogens/tst_add_hydrogen_5.py mmtbx/hydrogens/tst_add_hydrogen_6.py mmtbx/hydrogens/tst_add_hydrogen_7.py mmtbx/hydrogens/tst_add_hydrogen_8.py mmtbx/hydrogens/tst_add_hydrogen_9.py mmtbx/hydrogens/tst_add_hydrogen_time.py mmtbx/hydrogens/tst_connectivity.py mmtbx/hydrogens/tst_const_dihedral.py mmtbx/hydrogens/tst_parameterization_1.py mmtbx/hydrogens/tst_parameterization_2.py mmtbx/hydrogens/tst_parameterization_3.py mmtbx/hydrogens/tst_parameterization_4.py mmtbx/hydrogens/tst_parameterization_5.py mmtbx/hydrogens/tst_parameterization_6.py mmtbx/hydrogens/tst_parameterization_7.py mmtbx/hydrogens/tst_parameterization_8.py mmtbx/hydrogens/tst_parameterization_9.py mmtbx/hydrogens/tst_riding_coefficients.py mmtbx/hydrogens/tst_riding_fd_1.py mmtbx/hydrogens/tst_riding_fd_2.py mmtbx/hydrogens/tst_riding_fd_3.py mmtbx/hydrogens/tst_riding_fd_4.py mmtbx/hydrogens/tst_riding_fd_5.py mmtbx/hydrogens/tst_riding_manager.py mmtbx/hydrogens/tst_riding_minimize.py mmtbx/hydrogens/tst_validate_H.py mmtbx/ias/ mmtbx/ias/tst_ias.py mmtbx/idealized_aa_residues/ mmtbx/idealized_aa_residues/tst.py mmtbx/ions/ mmtbx/ions/tst_environment.py mmtbx/ions/tst_geometries.py mmtbx/ions/tst_parameters.py mmtbx/ions/tst_pick_approx_zn.py mmtbx/ions/tst_pick_ca.py mmtbx/ions/tst_pick_ca_svm.py mmtbx/ions/tst_pick_k.py mmtbx/ions/tst_pick_mg.py mmtbx/ions/tst_pickle.py mmtbx/ions/tst_symmetry_axis.py mmtbx/ions/tst_utils.py mmtbx/ions/tst_validate_ca.py mmtbx/ions/tst_validate_mg.py mmtbx/ions/svm/ mmtbx/ions/svm/tst_classifier_01.py mmtbx/ions/svm/tst_classifier_02.py mmtbx/kinemage/ mmtbx/kinemage/tst_validation.py mmtbx/ligands/ mmtbx/ligands/tst_electron_scripting.py mmtbx/ligands/tst_ready_set_utils.py mmtbx/ligands/tst_xtal_screens.py mmtbx/maps/ mmtbx/maps/tst_composite_omit_map.py mmtbx/maps/tst_composite_omit_map_2.py mmtbx/maps/tst_composite_omit_map_3.py mmtbx/maps/tst_correlation.py mmtbx/maps/tst_map_model_cc_and_vals_per_atom_xtal.py mmtbx/masks/ mmtbx/masks/tst_asu_mask.py mmtbx/masks/tst_mask.cpp mmtbx/masks/tst_masks.py mmtbx/max_lik/ mmtbx/max_lik/tst_max_lik.py mmtbx/max_lik/tst_maxlik.py mmtbx/monomer_library/ mmtbx/monomer_library/tst_all_cif_files.py mmtbx/monomer_library/tst_carbo_linking.py mmtbx/monomer_library/tst_chg.py mmtbx/monomer_library/tst_cif_triage.py mmtbx/monomer_library/tst_cif_types.py mmtbx/monomer_library/tst_correct_hydrogens.py mmtbx/monomer_library/tst_deuterium_terminii.py mmtbx/monomer_library/tst_geo_reduce_for_tardy.py mmtbx/monomer_library/tst_glyco_coordination.py mmtbx/monomer_library/tst_glyco_hand.py mmtbx/monomer_library/tst_idealized_aa.py mmtbx/monomer_library/tst_iron_sulfur_clusters.py mmtbx/monomer_library/tst_linking.py mmtbx/monomer_library/tst_metal_coordination.py mmtbx/monomer_library/tst_motif.py mmtbx/monomer_library/tst_neutron_distance.py mmtbx/monomer_library/tst_paral_geo.py mmtbx/monomer_library/tst_pdb_interpretation.py mmtbx/monomer_library/tst_pdb_interpretation_2.py mmtbx/monomer_library/tst_pdb_interpretation_3.py mmtbx/monomer_library/tst_pdb_interpretation_4.py mmtbx/monomer_library/tst_pdb_interpretation_5.py mmtbx/monomer_library/tst_pdb_interpretation_ncs_processing.py mmtbx/monomer_library/tst_protein_interpretation.py mmtbx/monomer_library/tst_rna_dna_interpretation.py mmtbx/monomer_library/tst_rna_sugar_pucker_analysis.py mmtbx/monomer_library/tst_rotamer_utils.py mmtbx/monomer_library/tst_selection.py mmtbx/monomer_library/tst_server.py mmtbx/monomer_library/tst_superpose_ideal.py mmtbx/monomer_library/tst_tyr_from_gly_and_bnz.py mmtbx/monomer_library/tst_user_supplied_library.py mmtbx/nci/ mmtbx/nci/tst_hbond.py mmtbx/pair_interaction/ mmtbx/pair_interaction/tst_00.py mmtbx/pair_interaction/tst_01.py mmtbx/pair_interaction/tst_02.py mmtbx/pair_interaction/tst_03.py mmtbx/pair_interaction/tst_04.py mmtbx/pair_interaction/tst_05.py mmtbx/polygon/ mmtbx/polygon/tst.py mmtbx/polygon/tst_gui.py mmtbx/polygon/tst_polygon_data.py mmtbx/probe/ mmtbx/probe/tst_mmtbx_probe_ext.py mmtbx/probe/tst_probe.cpp mmtbx/real_space/ mmtbx/real_space/tst.py mmtbx/reduce/ mmtbx/reduce/tst_mmtbx_reduce_ext.py mmtbx/refinement/ mmtbx/refinement/tst_anomalous_scatterer_groups.py mmtbx/refinement/tst_fit_rotamers.py mmtbx/refinement/tst_group.py mmtbx/refinement/tst_group_2.py mmtbx/refinement/tst_misc.py mmtbx/refinement/tst_occupancy_selections.py mmtbx/refinement/tst_real_space_simple.py mmtbx/refinement/tst_refinement_flags.py mmtbx/refinement/tst_rigid_body.py mmtbx/refinement/tst_rigid_body_groups_from_pdb_chains.py mmtbx/refinement/tst_select_best_starting_model.py mmtbx/refinement/real_space/ mmtbx/refinement/real_space/tst_aa_residue_axes_and_clusters.py mmtbx/refinement/real_space/tst_fit_residue_0.py mmtbx/refinement/real_space/tst_fit_residue_0H.py mmtbx/refinement/real_space/tst_fit_residue_1.py mmtbx/refinement/real_space/tst_fit_residue_1H.py mmtbx/refinement/real_space/tst_fit_residue_2.py mmtbx/refinement/real_space/tst_fit_residue_3.py mmtbx/refinement/real_space/tst_fit_residue_4.py mmtbx/refinement/real_space/tst_fit_residue_5.py mmtbx/refinement/real_space/tst_fit_residue_6.py mmtbx/refinement/real_space/tst_fit_residue_7.py mmtbx/refinement/real_space/tst_fit_residue_full_sampling.py mmtbx/refinement/real_space/tst_fit_residues_1.py mmtbx/refinement/real_space/tst_fit_residues_1H.py mmtbx/refinement/real_space/tst_fit_residues_2.py mmtbx/refinement/real_space/tst_fit_residues_3.py mmtbx/refinement/real_space/tst_fit_residues_4.py mmtbx/refinement/real_space/tst_fit_residues_5.py mmtbx/refinement/real_space/tst_fit_residues_6.py mmtbx/refinement/real_space/tst_fit_residues_selection.py mmtbx/refinement/real_space/tst_fit_water.py mmtbx/refinement/real_space/tst_individual_sites_1.py mmtbx/refinement/real_space/tst_individual_sites_2.py mmtbx/refinement/real_space/tst_individual_sites_3.py mmtbx/refinement/real_space/tst_monitor.py mmtbx/refinement/real_space/tst_rigid_body.py mmtbx/refinement/real_space/tst_weight.py mmtbx/regression/tst_add_arrows_on_plot.py mmtbx/regression/tst_add_h_to_water.py mmtbx/regression/tst_adp_restraints.py mmtbx/regression/tst_alignment.py mmtbx/regression/tst_altloc_chain_break.py mmtbx/regression/tst_altloc_remediate.py mmtbx/regression/tst_angle.py mmtbx/regression/tst_anomalous_substructure.py mmtbx/regression/tst_apply_cif_restraints.py mmtbx/regression/tst_arginine_geometry.py mmtbx/regression/tst_cc_star.py mmtbx/regression/tst_chain_comparison.py mmtbx/regression/tst_chain_comparison_cif.py mmtbx/regression/tst_cif_as_mtz_wavelengths.py mmtbx/regression/tst_cis_trans_peptide_link.py mmtbx/regression/tst_clashes.py mmtbx/regression/tst_command_line_input.py mmtbx/regression/tst_domains_from_pae.py mmtbx/regression/tst_domains_from_pae_cif.py mmtbx/regression/tst_dynamics_cli.py mmtbx/regression/tst_examples.py mmtbx/regression/tst_find_ncs.py mmtbx/regression/tst_find_ss_structure.py mmtbx/regression/tst_find_ss_structure_cif.py mmtbx/regression/tst_flipping_his.py mmtbx/regression/tst_fmodel.py mmtbx/regression/tst_fmodel_2.py mmtbx/regression/tst_fmodel_and_dm.py mmtbx/regression/tst_fmodel_fd.py mmtbx/regression/tst_fmodel_misc.py mmtbx/regression/tst_fmodel_no_cryst1.py mmtbx/regression/tst_geo_min_restraints_phil.py mmtbx/regression/tst_geometry_minimization.py mmtbx/regression/tst_helix_sheet_recs_as_pdb_files.py mmtbx/regression/tst_holton_geometry_validation.py mmtbx/regression/tst_isomorphous_difference_misc.py mmtbx/regression/tst_ligand_interactions.py mmtbx/regression/tst_ligand_ncs.py mmtbx/regression/tst_loop_closure.py mmtbx/regression/tst_lrv.py mmtbx/regression/tst_map_model_cc.py mmtbx/regression/tst_map_type_parser.py mmtbx/regression/tst_maps_misc.py mmtbx/regression/tst_metal_link_1.py mmtbx/regression/tst_minimize_chain.py mmtbx/regression/tst_ml_estimate.py mmtbx/regression/tst_mmtbx_refinement_wrappers.py mmtbx/regression/tst_mmtbx_refinement_wrappers_1.py mmtbx/regression/tst_mmtbx_refinement_wrappers_2.py mmtbx/regression/tst_model_map.py mmtbx/regression/tst_model_vs_map.py mmtbx/regression/tst_model_vs_sequence.py mmtbx/regression/tst_models_to_from_chains.py mmtbx/regression/tst_msa.py mmtbx/regression/tst_mtz2map.py mmtbx/regression/tst_multi_residue_class.py mmtbx/regression/tst_ordered_solvent.py mmtbx/regression/tst_origin_ids.py mmtbx/regression/tst_pdbtools.py mmtbx/regression/tst_polder.py mmtbx/regression/tst_polder_1.py mmtbx/regression/tst_polder_2.py mmtbx/regression/tst_polder_3.py mmtbx/regression/tst_polder_4.py mmtbx/regression/tst_polder_box.py mmtbx/regression/tst_polder_ccs.py mmtbx/regression/tst_probe.py mmtbx/regression/tst_process_predicted_model.py mmtbx/regression/tst_process_predicted_model_cif.py mmtbx/regression/tst_prune_model.py mmtbx/regression/tst_psi_phi_extraction.py mmtbx/regression/tst_rank_scale_map.py mmtbx/regression/tst_rdkit_utils_fragmentation.py mmtbx/regression/tst_rdkit_utils_molecule.py mmtbx/regression/tst_real_space_correlation.py mmtbx/regression/tst_reduce.py mmtbx/regression/tst_reduce2_no_symmetry.py mmtbx/regression/tst_reduce_cryoem_resolution.py mmtbx/regression/tst_reduce_custom_bond.py mmtbx/regression/tst_reduce_switch.py mmtbx/regression/tst_reduce_timeout.py mmtbx/regression/tst_refine_anomalous_substructure.py mmtbx/regression/tst_regularize_from_pdb.py mmtbx/regression/tst_regularize_from_pdb_cif.py mmtbx/regression/tst_ribbons.py mmtbx/regression/tst_rigid_bond_test.py mmtbx/regression/tst_ringer.py mmtbx/regression/tst_sampled_model_density.py mmtbx/regression/tst_scattering_table.py mmtbx/regression/tst_scattering_type_registry.py mmtbx/regression/tst_schrodinger_interface.py mmtbx/regression/tst_sequence_validation.py mmtbx/regression/tst_sort_hetatms.py mmtbx/regression/tst_special_term_at_end.py mmtbx/regression/tst_ss_validation_long_chainids.py mmtbx/regression/tst_statistics_output.py mmtbx/regression/tst_superpose.py mmtbx/regression/tst_table_one.py mmtbx/regression/tst_utils.py mmtbx/regression/tst_validate_ligands.py mmtbx/regression/tst_validate_ligands_2.py mmtbx/regression/tst_validate_ligands_3.py mmtbx/regression/tst_validate_ligands_4.py mmtbx/regression/tst_validation_summary.py mmtbx/regression/discamb/ mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_1.py mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_2.py mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_3.py mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_4.py mmtbx/regression/discamb/tst_IAM_discamb_vs_cctbx_5.py mmtbx/regression/discamb/tst_IAM_gradients_1.py mmtbx/regression/discamb/tst_fmodel_fd_discamb.py mmtbx/regression/discamb/tst_fmodel_fd_discamb_taam.py mmtbx/regression/discamb/tst_fmodel_fd_discamb_taam_tyr.py mmtbx/regression/discamb/tst_olex2_vs_pydiscamb_TAAM_1.py mmtbx/regression/discamb/tst_olex2_vs_pydiscamb_TAAM_2.py mmtbx/regression/fix_cablam/ mmtbx/regression/fix_cablam/tst_basic_cl_operations.py mmtbx/regression/fix_cablam/tst_insertion_codes.py mmtbx/regression/fix_cablam/tst_one_resid_rotation.py mmtbx/regression/fix_cablam/tst_single_outliers_surroundings.py mmtbx/regression/model/ mmtbx/regression/model/tst_model.py mmtbx/regression/model/tst_model_2.py mmtbx/regression/model/tst_model_biomt_mtrix.py mmtbx/regression/model/tst_model_biomt_mtrix_2.py mmtbx/regression/model/tst_model_cart_ref_restraints.py mmtbx/regression/model/tst_model_dedeuterate.py mmtbx/regression/model/tst_model_get_vdw_radii.py mmtbx/regression/model/tst_model_merge.py mmtbx/regression/model/tst_model_mtrix.py mmtbx/regression/model/tst_model_ncs.py mmtbx/regression/model/tst_model_neutralize_scatterers.py mmtbx/regression/model/tst_model_pairs_within.py mmtbx/regression/model/tst_model_ramachandran.py mmtbx/regression/model/tst_model_remove_alternative_conformations.py mmtbx/regression/model/tst_model_set_hydrogen_bond_length.py mmtbx/regression/model/tst_model_symmetry.py mmtbx/regression/model/tst_model_tors_ref_restraints.py mmtbx/regression/model/tst_model_utils_merge_models.py mmtbx/regression/model/tst_restrain_selection_to_self_or_neighbors.py mmtbx/regression/model_idealization/ mmtbx/regression/model_idealization/tst_ext_map_01.py mmtbx/regression/model_idealization/tst_ligands.py mmtbx/regression/model_idealization/tst_nomap_01.py mmtbx/regression/model_idealization/tst_nomap_02.py mmtbx/regression/model_idealization/tst_nomap_03.py mmtbx/regression/model_idealization/tst_nomap_04.py mmtbx/regression/model_idealization/tst_with_mtz.py mmtbx/regression/model_idealization/tst_withmap_01.py mmtbx/regression/model_idealization/tst_withmap_02.py mmtbx/regression/model_idealization/tst_withmap_03.py mmtbx/regression/model_idealization/tst_withmap_04.py mmtbx/regression/model_idealization/tst_withmap_05.py mmtbx/regression/model_idealization/tst_withmap_06.py mmtbx/regression/mtz/ mmtbx/regression/mtz/tst_xtriage_fmodel.mtz mmtbx/regression/ncs/ mmtbx/regression/ncs/tst_geometry_minimization_ncs_constraints.py mmtbx/regression/ncs/tst_minimization_ncs_constraints.py mmtbx/regression/ncs/tst_minimization_ncs_constraints2.py mmtbx/regression/ncs/tst_minimization_ncs_constraints3.py mmtbx/regression/ncs/tst_minimization_ncs_constraints_real_space.py mmtbx/regression/ncs/tst_ncs_restraints_group_list.py mmtbx/regression/ncs/tst_ncs_search.py mmtbx/regression/ncs/tst_ncs_search_flips.py mmtbx/regression/ncs/tst_ncs_utils.py mmtbx/regression/ncs/tst_restraints.py mmtbx/regression/pdb_interpretation/ mmtbx/regression/pdb_interpretation/tst_custom_nb_sym_excl.py mmtbx/regression/pdb_interpretation/tst_edits.py mmtbx/regression/pdb_interpretation/tst_edits_actions.py mmtbx/regression/pdb_interpretation/tst_tardy_geo.py mmtbx/regression/pdb_interpretation/tst_using_ncs_1.py mmtbx/regression/pdb_interpretation/tst_using_ncs_2.py mmtbx/regression/real_space_refine_chain/ mmtbx/regression/real_space_refine_chain/tst_00.py mmtbx/regression/real_space_refine_chain/tst_01.py mmtbx/regression/tls/ mmtbx/regression/tls/tst_formula_t_S_10_vs_11_2igd.py mmtbx/regression/tls/tst_formula_t_S_10_vs_11_4muy.py mmtbx/regression/tls/tst_get_t_scheme.py mmtbx/regression/tls/tst_tls.py mmtbx/regression/tls/tst_tls_analysis.py mmtbx/regression/tls/tst_tls_as_xyz.py mmtbx/regression/tls/tst_tls_optimise_amplitudes.py mmtbx/regression/tls/tst_tls_refinement_fft.py mmtbx/regression/tls/tst_tls_utils.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_00.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_01.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_02.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_03.py mmtbx/regression/tls/tst_u_tls_vs_u_ens_04.py mmtbx/regression/tncs/ mmtbx/regression/tncs/tst_epsfac_and_radius.py mmtbx/regression/tncs/tst_fd.py mmtbx/regression/tncs/tst_moments.py mmtbx/regression/tncs/tst_pair.py mmtbx/ringer/ mmtbx/ringer/tst_em_rscc.py mmtbx/ringer/tst_emringer.py mmtbx/rotamer/ mmtbx/rotamer/tst_geostd_vs_sidechain_angles_props.py mmtbx/rotamer/tst_rotamer_eval.py mmtbx/rsr/ mmtbx/rsr/tst.py mmtbx/scaling/ mmtbx/scaling/tst_absences.py mmtbx/scaling/tst_bayesian_estimator.py mmtbx/scaling/tst_massage_data.py mmtbx/scaling/tst_mean_f_rms_f.py mmtbx/scaling/tst_outlier.py mmtbx/scaling/tst_plan_sad_experiment.py mmtbx/scaling/tst_scaling.py mmtbx/scaling/tst_sigmaa.py mmtbx/scaling/tst_xtriage.py mmtbx/scaling/tst_xtriage_twin_analyses.py mmtbx/secondary_structure/ mmtbx/secondary_structure/tst.py mmtbx/secondary_structure/tst_insertion_codes.py mmtbx/secondary_structure/tst_segid.py mmtbx/secondary_structure/build/ mmtbx/secondary_structure/build/tst_1.py mmtbx/secondary_structure/build/tst_2.py mmtbx/secondary_structure/build/tst_3.py mmtbx/secondary_structure/build/tst_io.py mmtbx/secondary_structure/build/tst_ss_id_ncs.py mmtbx/utils/ mmtbx/utils/tst_switch_rotamers.py mmtbx/validation/ mmtbx/validation/regression/ mmtbx/validation/regression/tst_barbed_wire_analysis.py mmtbx/validation/regression/tst_cablam.py mmtbx/validation/regression/tst_cablam_2.py mmtbx/validation/regression/tst_cbetadev.py mmtbx/validation/regression/tst_cbetadev_02.py mmtbx/validation/regression/tst_chiral_validation.py mmtbx/validation/regression/tst_clashscore.py mmtbx/validation/regression/tst_clashscore_2.py mmtbx/validation/regression/tst_do_flips_clashscore.py mmtbx/validation/regression/tst_experimental.py mmtbx/validation/regression/tst_find_region_max_value.py mmtbx/validation/regression/tst_hydrogen_addition_clashscore.py mmtbx/validation/regression/tst_keep_hydrogens.py mmtbx/validation/regression/tst_model_properties.py mmtbx/validation/regression/tst_molprobity_1.py mmtbx/validation/regression/tst_molprobity_2.py mmtbx/validation/regression/tst_molprobity_3.py mmtbx/validation/regression/tst_molprobity_4.py mmtbx/validation/regression/tst_molprobity_5.py mmtbx/validation/regression/tst_molprobity_arguments.py mmtbx/validation/regression/tst_mp_geo.py mmtbx/validation/regression/tst_mp_geo_chiral_volume_cases.py mmtbx/validation/regression/tst_mp_geo_endtoend.py mmtbx/validation/regression/tst_mp_validate_bonds.py mmtbx/validation/regression/tst_omegalyze.py mmtbx/validation/regression/tst_probe2_asu_bond_proxies.py mmtbx/validation/regression/tst_rama_z_01.py mmtbx/validation/regression/tst_rama_z_02.py mmtbx/validation/regression/tst_ramalyze.py mmtbx/validation/regression/tst_ramalyze2.py mmtbx/validation/regression/tst_ramalyze_rare.py mmtbx/validation/regression/tst_restraints.py mmtbx/validation/regression/tst_rna_validate.py mmtbx/validation/regression/tst_rotalyze.py mmtbx/validation/regression/tst_suitename.py mmtbx/validation/regression/tst_symmetry_SS.py mmtbx/validation/regression/tst_undowser.py mmtbx/validation/regression/tst_undowser2.py mmtbx/validation/regression/tst_utils.py mmtbx/validation/regression/tst_waters.py mmtbx/wwpdb/ mmtbx/wwpdb/tst_rcsb_entry_request.py mmtbx/wwpdb/tst_rcsb_web_services.py sent 8,587,880 bytes received 9,011 bytes 17,193,782.00 bytes/sec total size is 8,553,978 speedup is 1.00 building file list ... done omptbx/ omptbx/tst.py sent 1,313 bytes received 38 bytes 2,702.00 bytes/sec total size is 1,175 speedup is 0.87 building file list ... done rstbx/bpcx/ rstbx/bpcx/detector_model/ rstbx/bpcx/detector_model/tst_detector_model.py rstbx/cftbx/ rstbx/cftbx/tst_coordinate_frame_converter.py rstbx/diffraction/ rstbx/diffraction/tst_ewald_sphere.py rstbx/diffraction/tst_partial_derivatives.py rstbx/diffraction/tst_predict.py rstbx/diffraction/fastbragg/ rstbx/diffraction/fastbragg/tst_bragg_minimal.py rstbx/diffraction/fastbragg/tst_utils_clustering.py rstbx/dps_core/ rstbx/dps_core/tst_iotbx_converter.py rstbx/indexing/ rstbx/indexing/tst_auto_monoscan.py rstbx/indexing/tst_dataset1.py rstbx/simage/ rstbx/simage/tst.py rstbx/simulation/ rstbx/simulation/tst_xfel1_simple.py rstbx/sublattice_support/ rstbx/sublattice_support/tst_sublattice.py rstbx/viewer/ rstbx/viewer/tst.py sent 181,050 bytes received 311 bytes 362,722.00 bytes/sec total size is 179,407 speedup is 0.99 building file list ... done scitbx/array_family/ scitbx/array_family/tst_accessors.cpp scitbx/array_family/tst_af_1.cpp scitbx/array_family/tst_af_2.cpp scitbx/array_family/tst_af_3.cpp scitbx/array_family/tst_af_4.cpp scitbx/array_family/tst_af_5.cpp scitbx/array_family/tst_af_helpers.cpp scitbx/array_family/tst_mat3.cpp scitbx/array_family/tst_optional_copy.cpp scitbx/array_family/tst_rectangular_full_packed.cpp scitbx/array_family/tst_ref_matrix_facet.cpp scitbx/array_family/tst_sym_mat3.cpp scitbx/array_family/tst_unsigned_float_arithmetic.cpp scitbx/array_family/tst_vec3.cpp scitbx/array_family/boost_python/ scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py scitbx/array_family/boost_python/tst_flex.py scitbx/array_family/boost_python/tst_flex_argument_passing.py scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py scitbx/array_family/boost_python/tst_numpy_bridge.py scitbx/array_family/boost_python/tst_numpy_scalar_conversions.py scitbx/array_family/boost_python/tst_shared.py scitbx/array_family/boost_python/tst_smart_selection.py scitbx/dtmin/ scitbx/dtmin/regression/ scitbx/dtmin/regression/tst_dtmin_basic.py scitbx/dtmin/regression/tst_dtmin_booth.py scitbx/dtmin/regression/tst_dtmin_twisted.py scitbx/error/ scitbx/error/tst_error.cpp scitbx/error/tst_error.py scitbx/fftpack/ scitbx/fftpack/boost_python/ scitbx/fftpack/boost_python/tst_fftpack.py scitbx/fftpack/timing/ scitbx/fftpack/timing/tst3d.cpp scitbx/glmtbx/ scitbx/glmtbx/tests/ scitbx/glmtbx/tests/tst.py scitbx/graph/ scitbx/graph/tst_rigidity.py scitbx/graph/tst_tardy_tree.py scitbx/graph/tst_tardy_tree_find_paths.py scitbx/graph/tst_utils.py scitbx/graphics_utils/ scitbx/graphics_utils/tst.py scitbx/iso_surface/ scitbx/iso_surface/tst_iso_surface.m scitbx/iso_surface/tst_iso_surface.py scitbx/lbfgs/ scitbx/lbfgs/tst_curvatures.py scitbx/lbfgs/tst_ext.py scitbx/lbfgs/tst_func_free_line_search.py scitbx/lbfgs/tst_lbfgs.cpp scitbx/lbfgs/tst_lbfgs_fem.py scitbx/lbfgs/tst_mpi_split_evaluator.py scitbx/lbfgsb/ scitbx/lbfgsb/boost_python/ scitbx/lbfgsb/boost_python/tst_fit_cdf.py scitbx/lbfgsb/boost_python/tst_lbfgsb.py scitbx/linalg/ scitbx/linalg/tests/ scitbx/linalg/tests/tst_cholesky.py scitbx/linalg/tests/tst_eigensystem.py scitbx/linalg/tests/tst_lapack_dsyev.py scitbx/linalg/tests/tst_lapack_svd.py scitbx/linalg/tests/tst_matrix.py scitbx/linalg/tests/tst_svd.py scitbx/lstbx/ scitbx/lstbx/tests/ scitbx/lstbx/tests/tst_normal_equations.nb scitbx/lstbx/tests/tst_normal_equations.py scitbx/math/ scitbx/math/tst_2d_zernike.py scitbx/math/tst_bessel_zeros.py scitbx/math/tst_multivariate_moments.py scitbx/math/tst_so3_lie_algebra.py scitbx/math/tst_undirected_graph.py scitbx/math/tst_zernike.py scitbx/math/tst_zernike_mom.py scitbx/math/tests/ scitbx/math/tests/tst.cpp scitbx/math/tests/tst_angle_derivative.py scitbx/math/tests/tst_bessel.py scitbx/math/tests/tst_clustering.py scitbx/math/tests/tst_cubic_equation.py scitbx/math/tests/tst_curve_fitting.py scitbx/math/tests/tst_dmatrix.py scitbx/math/tests/tst_error_propagation_matrix_inverse.py scitbx/math/tests/tst_euler_angles.py scitbx/math/tests/tst_exp_functions.py scitbx/math/tests/tst_fit_peak.py scitbx/math/tests/tst_fit_quadratic_function.py scitbx/math/tests/tst_g_function.py scitbx/math/tests/tst_gaussian.py scitbx/math/tests/tst_gaussian_fit_1d_analytical.py scitbx/math/tests/tst_gcd.py scitbx/math/tests/tst_halton.py scitbx/math/tests/tst_line_search.py scitbx/math/tests/tst_math.py scitbx/math/tests/tst_minimum_covering_ellipsoid.py scitbx/math/tests/tst_orthonormal_basis.py scitbx/math/tests/tst_periodogram.py scitbx/math/tests/tst_quadrature.py scitbx/math/tests/tst_r3_rotation.py scitbx/math/tests/tst_resample.py scitbx/math/tests/tst_similarity_indices.py scitbx/math/tests/tst_superpose.py scitbx/math/tests/tst_tetrahedron.py scitbx/math/tests/tst_uniform_rotation_matrix.py scitbx/math/tests/tst_weighted_correlation.py scitbx/matrix/ scitbx/matrix/tests/ scitbx/matrix/tests/tst_cholesky.cpp scitbx/matrix/tests/tst_givens.cpp scitbx/matrix/tests/tst_householder.cpp scitbx/matrix/tests/tst_householder.nb scitbx/matrix/tests/tst_householder.py scitbx/matrix/tests/tst_row_echelon.py scitbx/matrix/tests/tst_svd.cpp scitbx/matrix/tests/tst_svd.nb scitbx/matrix/tests/tst_svd_accuracy.nb scitbx/minpack/ scitbx/minpack/tst.py scitbx/python_utils/ scitbx/python_utils/tst_graph.py scitbx/python_utils/tst_random_transform.py scitbx/python_utils/tst_robust.py scitbx/random/ scitbx/random/tests/ scitbx/random/tests/tst_random.py scitbx/rigid_body/ scitbx/rigid_body/tst.py scitbx/rigid_body/essence/ scitbx/rigid_body/essence/tst_basic.py scitbx/rigid_body/essence/tst_energy_plots.py scitbx/rigid_body/essence/tst_tardy.py scitbx/rigid_body/proto/ scitbx/rigid_body/proto/tst_featherstone.py scitbx/rigid_body/proto/tst_free_motion.py scitbx/rigid_body/proto/tst_free_motion_hard.py scitbx/rigid_body/proto/tst_joint_lib.py scitbx/rigid_body/proto/tst_molecules.py scitbx/rigid_body/proto/tst_singular.py scitbx/rigid_body/proto/tst_spherical_refinement.py scitbx/serialization/ scitbx/serialization/tst_base_256.cpp scitbx/sparse/ scitbx/sparse/tests/ scitbx/sparse/tests/tst_lu_factorization.py scitbx/sparse/tests/tst_sparse.cpp scitbx/sparse/tests/tst_sparse.py scitbx/stl/ scitbx/stl/tst_map.py scitbx/stl/tst_set.py scitbx/stl/tst_vector.py scitbx/suffixtree/ scitbx/suffixtree/test/ scitbx/suffixtree/test/tst_single.py scitbx/tests/ scitbx/tests/tst_basic.csh scitbx/tests/tst_basic.py scitbx/tests/tst_cubicle_neighbors.py scitbx/tests/tst_genetic_algorithm_with_mp.py scitbx/tests/tst_minimizer_lbfgs_general.py scitbx/tests/tst_r3_utils.py scitbx/tests/tst_regular_grid_on_unit_sphere.py scitbx/tests/tst_smoothing.py scitbx/wigner/ scitbx/wigner/tst_wigner3j.py sent 1,128,914 bytes received 2,641 bytes 2,263,110.00 bytes/sec total size is 1,118,489 speedup is 0.99 building file list ... done sent 154 bytes received 12 bytes 332.00 bytes/sec total size is 0 speedup is 0.00 building file list ... done smtbx/ab_initio/ smtbx/ab_initio/tests/ smtbx/ab_initio/tests/tst_ab_initio_ext.py smtbx/ab_initio/tests/tst_charge_flipping.py smtbx/absolute_structure/ smtbx/absolute_structure/tests/ smtbx/absolute_structure/tests/tst_absolute_structure.py smtbx/masks/ smtbx/masks/tests/ smtbx/masks/tests/tst_masks.py smtbx/refinement/ smtbx/refinement/constraints/ smtbx/refinement/constraints/tests/ smtbx/refinement/constraints/tests/tst_constrained_structure.py smtbx/refinement/constraints/tests/tst_direction.py smtbx/refinement/constraints/tests/tst_disorder.py smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.cpp smtbx/refinement/constraints/tests/tst_lbfgs.py smtbx/refinement/constraints/tests/tst_occupancies.py smtbx/refinement/constraints/tests/tst_reparametrisation.cpp smtbx/refinement/constraints/tests/tst_reparametrisation.py smtbx/refinement/constraints/tests/tst_rigid.py smtbx/refinement/constraints/tests/tst_same_group.py smtbx/refinement/constraints/tests/tst_special_position.cpp smtbx/refinement/restraints/ smtbx/refinement/restraints/tests/ smtbx/refinement/restraints/tests/tst_adp_restraints.py smtbx/refinement/restraints/tests/tst_manager.py smtbx/refinement/restraints/tests/tst_restraints.py smtbx/refinement/tests/ smtbx/refinement/tests/tst_least_squares.py smtbx/refinement/tests/tst_weighting_schemes.py smtbx/regression/ smtbx/regression/tst_commandline_anomrefine.py smtbx/regression/tst_commandline_refine.py smtbx/structure_factors/ smtbx/structure_factors/direct/ smtbx/structure_factors/direct/tests/ smtbx/structure_factors/direct/tests/tst_standard_xray.py smtbx/tests/ smtbx/tests/tst_utils.py sent 250,736 bytes received 519 bytes 502,510.00 bytes/sec total size is 248,243 speedup is 0.99 building file list ... done spotfinder/core_toolbox/ spotfinder/core_toolbox/boost_python/ spotfinder/core_toolbox/boost_python/tst_small_image.py sent 5,469 bytes received 37 bytes 11,012.00 bytes/sec total size is 5,074 speedup is 0.92 building file list ... done tbxx/ tbxx/tests/ tbxx/tests/tst_pretty_type_name.cpp sent 493 bytes received 41 bytes 1,068.00 bytes/sec total size is 323 speedup is 0.60 building file list ... done wxtbx/regression/ wxtbx/regression/tst_b_plot.py wxtbx/regression/tst_headless_construct.py wxtbx/regression/tst_imports.py wxtbx/regression/tst_process_control.py sent 10,261 bytes received 91 bytes 20,704.00 bytes/sec total size is 9,830 speedup is 0.95 building file list ... done xcif/ xcif/regression/ xcif/regression/tst_api_compat.py xcif/regression/tst_bindings.py xcif/regression/tst_example_parse.py xcif/regression/tst_example_tokenize.py xcif/regression/tst_gil_release.py xcif/regression/tst_iotbx_cif_reader_engine.py xcif/regression/tst_iotbx_cif_reader_parity.py xcif/regression/tst_memory.py xcif/regression/tst_non_strict_mode.py xcif/regression/tst_parse_verify.py xcif/regression/tst_pdb_coordinates.py xcif/regression/tst_pdb_sf.py xcif/regression/tst_quoted_string_delimiter.py xcif/regression/tst_roundtrip.py xcif/regression/tst_semicolon_field_strict.py xcif/regression/tst_string_interning.py xcif/regression/tst_utf8.py xcif/regression/cpp/ xcif/regression/cpp/tst_data_model.cpp xcif/regression/cpp/tst_error_handling.cpp xcif/regression/cpp/tst_infrastructure.cpp xcif/regression/cpp/tst_mapped_file.cpp xcif/regression/cpp/tst_non_strict_mode.cpp xcif/regression/cpp/tst_numeric.cpp xcif/regression/cpp/tst_quoted_string_delimiter.cpp xcif/regression/cpp/tst_semicolon_field_strict.cpp xcif/regression/cpp/tst_string_view.cpp xcif/regression/cpp/tst_thread_safety.cpp xcif/regression/cpp/tst_tokenizer.cpp sent 202,850 bytes received 557 bytes 406,814.00 bytes/sec total size is 200,767 speedup is 0.99 building file list ... done ./ annlib_adaptbx/ annlib_adaptbx/tests/ annlib_adaptbx/tests/data.txt annlib_adaptbx/tests/query.txt cctbx/maptbx/bcr/tables/ cctbx/maptbx/bcr/tables/Ag1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ag2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ag_electron.json.gz cctbx/maptbx/bcr/tables/Ag_wk1995.json.gz cctbx/maptbx/bcr/tables/Al3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Al_electron.json.gz cctbx/maptbx/bcr/tables/Al_wk1995.json.gz cctbx/maptbx/bcr/tables/Au1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Au3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Au_electron.json.gz cctbx/maptbx/bcr/tables/Au_wk1995.json.gz cctbx/maptbx/bcr/tables/B_electron.json.gz cctbx/maptbx/bcr/tables/B_wk1995.json.gz cctbx/maptbx/bcr/tables/Ba2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ba_electron.json.gz cctbx/maptbx/bcr/tables/Ba_wk1995.json.gz cctbx/maptbx/bcr/tables/Br1-_wk1995.json.gz cctbx/maptbx/bcr/tables/Br_electron.json.gz cctbx/maptbx/bcr/tables/Br_wk1995.json.gz cctbx/maptbx/bcr/tables/C_electron.json.gz cctbx/maptbx/bcr/tables/C_wk1995.json.gz cctbx/maptbx/bcr/tables/Ca2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ca_electron.json.gz cctbx/maptbx/bcr/tables/Ca_wk1995.json.gz cctbx/maptbx/bcr/tables/Cd2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Cd_electron.json.gz cctbx/maptbx/bcr/tables/Cd_wk1995.json.gz cctbx/maptbx/bcr/tables/Cl1-_wk1995.json.gz cctbx/maptbx/bcr/tables/Cl_electron.json.gz cctbx/maptbx/bcr/tables/Cl_wk1995.json.gz cctbx/maptbx/bcr/tables/Co2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Co3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Co_electron.json.gz cctbx/maptbx/bcr/tables/Co_wk1995.json.gz cctbx/maptbx/bcr/tables/Cr2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Cr3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Cr_electron.json.gz cctbx/maptbx/bcr/tables/Cr_wk1995.json.gz cctbx/maptbx/bcr/tables/Cu1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Cu2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Cu_electron.json.gz cctbx/maptbx/bcr/tables/Cu_wk1995.json.gz cctbx/maptbx/bcr/tables/D1-_wk1995.json.gz cctbx/maptbx/bcr/tables/D_wk1995.json.gz cctbx/maptbx/bcr/tables/F1-_wk1995.json.gz cctbx/maptbx/bcr/tables/F_electron.json.gz cctbx/maptbx/bcr/tables/F_wk1995.json.gz cctbx/maptbx/bcr/tables/Fe2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Fe3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Fe_electron.json.gz cctbx/maptbx/bcr/tables/Fe_wk1995.json.gz cctbx/maptbx/bcr/tables/H1-_wk1995.json.gz cctbx/maptbx/bcr/tables/H_electron.json.gz cctbx/maptbx/bcr/tables/H_wk1995.json.gz cctbx/maptbx/bcr/tables/Hg1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Hg2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Hg_electron.json.gz cctbx/maptbx/bcr/tables/Hg_wk1995.json.gz cctbx/maptbx/bcr/tables/I1-_wk1995.json.gz cctbx/maptbx/bcr/tables/I_electron.json.gz cctbx/maptbx/bcr/tables/I_wk1995.json.gz cctbx/maptbx/bcr/tables/K1+_wk1995.json.gz cctbx/maptbx/bcr/tables/K_electron.json.gz cctbx/maptbx/bcr/tables/K_wk1995.json.gz cctbx/maptbx/bcr/tables/Li1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Li_electron.json.gz cctbx/maptbx/bcr/tables/Li_wk1995.json.gz cctbx/maptbx/bcr/tables/Mg2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mg_electron.json.gz cctbx/maptbx/bcr/tables/Mg_wk1995.json.gz cctbx/maptbx/bcr/tables/Mn2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mn3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mn4+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mn_electron.json.gz cctbx/maptbx/bcr/tables/Mn_wk1995.json.gz cctbx/maptbx/bcr/tables/Mo3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mo5+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mo6+_wk1995.json.gz cctbx/maptbx/bcr/tables/Mo_electron.json.gz cctbx/maptbx/bcr/tables/Mo_wk1995.json.gz cctbx/maptbx/bcr/tables/N_electron.json.gz cctbx/maptbx/bcr/tables/N_wk1995.json.gz cctbx/maptbx/bcr/tables/Na1+_wk1995.json.gz cctbx/maptbx/bcr/tables/Na_electron.json.gz cctbx/maptbx/bcr/tables/Na_wk1995.json.gz cctbx/maptbx/bcr/tables/Ni2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ni3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ni_electron.json.gz cctbx/maptbx/bcr/tables/Ni_wk1995.json.gz cctbx/maptbx/bcr/tables/O1-_wk1995.json.gz cctbx/maptbx/bcr/tables/O2-_wk1995.json.gz cctbx/maptbx/bcr/tables/O_electron.json.gz cctbx/maptbx/bcr/tables/O_wk1995.json.gz cctbx/maptbx/bcr/tables/P_electron.json.gz cctbx/maptbx/bcr/tables/P_wk1995.json.gz cctbx/maptbx/bcr/tables/Pt2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Pt4+_wk1995.json.gz cctbx/maptbx/bcr/tables/Pt_electron.json.gz cctbx/maptbx/bcr/tables/Pt_wk1995.json.gz cctbx/maptbx/bcr/tables/S_electron.json.gz cctbx/maptbx/bcr/tables/S_wk1995.json.gz cctbx/maptbx/bcr/tables/Se_electron.json.gz cctbx/maptbx/bcr/tables/Se_wk1995.json.gz cctbx/maptbx/bcr/tables/Si4+_wk1995.json.gz cctbx/maptbx/bcr/tables/Si_electron.json.gz cctbx/maptbx/bcr/tables/Si_wk1995.json.gz cctbx/maptbx/bcr/tables/T1-_wk1995.json.gz cctbx/maptbx/bcr/tables/T_wk1995.json.gz cctbx/maptbx/bcr/tables/Ti2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ti3+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ti4+_wk1995.json.gz cctbx/maptbx/bcr/tables/Ti_electron.json.gz cctbx/maptbx/bcr/tables/Ti_wk1995.json.gz cctbx/maptbx/bcr/tables/Zn2+_wk1995.json.gz cctbx/maptbx/bcr/tables/Zn_electron.json.gz cctbx/maptbx/bcr/tables/Zn_wk1995.json.gz cctbx/regression/itvb_2001_table_a1427_hall_symbols.html cctbx/regression/data/ cctbx/regression/data/D7.ccp4 cctbx/regression/data/D7.ncs_spec cctbx/regression/data/D7.pdb cctbx/regression/data/D7.seq cma_es/cma/ cma_es/cma/initials.par fable/fem/ fable/fem/major_types.hpp fable/test/sf_times.py fable/test/lenient/ fable/test/lenient/NOTE 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iotbx/regression/data/non_zero_origin_model_split.cif iotbx/regression/data/non_zero_origin_model_split.pdb iotbx/regression/data/non_zero_origin_ncs_model.cif iotbx/regression/data/non_zero_origin_ncs_model.pdb iotbx/regression/data/non_zero_origin_ncs_spec.ncs_spec iotbx/regression/data/pdb1zff.ent iotbx/regression/data/phaser_1.mtz iotbx/regression/data/shelx.ins iotbx/regression/secondary_structure/1ubf_cutted.pdb iotbx/regression/secondary_structure/3jd6_noh.pdb iotbx/regression/secondary_structure/4a7h_chainC.pdb iotbx/regression/secondary_structure/5a63_chainBp.pdb iotbx/regression/secondary_structure/5a63_chainCp.pdb iotbx/xds/tests/INTEGRATE.HKL iotbx/xds/tests/NEW_XPARM.XDS iotbx/xds/tests/XDS.INP iotbx/xds/tests/XDS_2.INP iotbx/xds/tests/XPARM.XDS libtbx/citations.params mmtbx/regression/pdbs/ mmtbx/regression/pdbs/1ucs_cutted_xyz_rounded.pdb mmtbx/regression/pdbs/1yjp_h.pdb mmtbx/regression/pdbs/2ERL_noH.pdb mmtbx/regression/pdbs/7n2l.pdb mmtbx/regression/pdbs/AF_json_v3.cif mmtbx/regression/pdbs/AF_json_v3.pdb mmtbx/regression/pdbs/Fe_1brf_snip_reduced.pdb mmtbx/regression/pdbs/fibronectin_af_ca_1358_1537.cif mmtbx/regression/pdbs/fibronectin_af_ca_1358_1537.pdb mmtbx/regression/pdbs/ligand_before_prot.pdb mmtbx/regression/pdbs/one_chain_ligand_water.pdb mmtbx/regression/pdbs/p9.pdb mmtbx/regression/pdbs/pae.pdb mmtbx/regression/pdbs/pae_model.cif mmtbx/regression/pdbs/pae_model.pdb mmtbx/regression/pdbs/test1.cif mmtbx/regression/pdbs/two_chains.pdb mmtbx/regression/pdbs/two_chains_ligand_water.pdb rstbx/indexing/results2.dat rstbx/indexing/si_brief.dat rstbx/indexing/si_synthetic.dat scitbx/array_family/boost_python/regression_test.py scitbx/tests/__init__.py scitbx/tests/differential_evolution.py scitbx/tests/direct_search_simulated_annealing.py scitbx/tests/golden_section_search.py scitbx/tests/simplex.py smtbx/regression/test_data/ smtbx/regression/test_data/sucrose_p1.res smtbx/regression/test_data/thpp.cif smtbx/regression/test_data/thpp.hkl smtbx/regression/test_data/thpp.ins sent 85,699,405 bytes received 11,390 bytes 57,140,530.00 bytes/sec total size is 85,700,051 speedup is 1.00 make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' rm -f debian/libcctbx-dev.debhelper.log debian/libcctbx0.debhelper.log debian/python3-cctbx.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' dh_install -p libcctbx0 usr/lib/loongarch64-linux-gnu/lib*.so.* install -m0755 -d debian/libcctbx0//usr/lib/loongarch64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/loongarch64-linux-gnu/libann_adaptor.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libann_adaptor.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libasymmetric_map.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libasymmetric_map.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libcbf-private.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libcbf-private.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libccp4io.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libccp4io.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libcctbx.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libcctbx.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libomptbx.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libomptbx.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/librstbx.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/librstbx.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libspotfinder.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libspotfinder.so.0.0.1 debian/tmp/usr/lib/loongarch64-linux-gnu/libxcif.so.0 debian/tmp/usr/lib/loongarch64-linux-gnu/libxcif.so.0.0.1 debian/libcctbx0//usr/lib/loongarch64-linux-gnu/ dh_install -p libcctbx-dev usr/include/ install -m0755 -d debian/libcctbx-dev//usr cp --reflink=auto -a debian/tmp/usr/include/ debian/libcctbx-dev//usr/ dh_install -p libcctbx-dev usr/lib/loongarch64-linux-gnu/lib*.so install -m0755 -d debian/libcctbx-dev//usr/lib/loongarch64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/loongarch64-linux-gnu/libann_adaptor.so debian/tmp/usr/lib/loongarch64-linux-gnu/libasymmetric_map.so debian/tmp/usr/lib/loongarch64-linux-gnu/libcbf-private.so debian/tmp/usr/lib/loongarch64-linux-gnu/libccp4io.so debian/tmp/usr/lib/loongarch64-linux-gnu/libcctbx.so debian/tmp/usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so debian/tmp/usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so debian/tmp/usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so debian/tmp/usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so debian/tmp/usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so debian/tmp/usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so debian/tmp/usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so debian/tmp/usr/lib/loongarch64-linux-gnu/libomptbx.so debian/tmp/usr/lib/loongarch64-linux-gnu/librstbx.so debian/tmp/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so debian/tmp/usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so debian/tmp/usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so debian/tmp/usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so debian/tmp/usr/lib/loongarch64-linux-gnu/libspotfinder.so debian/tmp/usr/lib/loongarch64-linux-gnu/libxcif.so debian/libcctbx-dev//usr/lib/loongarch64-linux-gnu/ dh_install -p python3-cctbx usr/bin install -m0755 -d debian/python3-cctbx//usr cp --reflink=auto -a debian/tmp/usr/bin debian/python3-cctbx//usr/ install -m0755 -d debian/python3-cctbx//usr/lib/python3/dist-packages/cctbx/maptbx/bcr/ cp --reflink=auto -a ./cctbx/maptbx/bcr/CNOPSFeAu-6_1A_dist21.tab debian/python3-cctbx//usr/lib/python3/dist-packages/cctbx/maptbx/bcr// dh_install -p python3-cctbx usr/lib/cctbx install -m0755 -d debian/python3-cctbx//usr/lib cp --reflink=auto -a debian/tmp/usr/lib/cctbx debian/python3-cctbx//usr/lib/ install -m0755 -d debian/python3-cctbx//usr/lib/python3/dist-packages/cctbx/maptbx/bcr/ cp --reflink=auto -a ./cctbx/maptbx/bcr/CNOPSFeAu-6_1A_dist21.tab debian/python3-cctbx//usr/lib/python3/dist-packages/cctbx/maptbx/bcr// dh_install -p python3-cctbx usr/lib/python* install -m0755 -d debian/python3-cctbx//usr/lib cp --reflink=auto -a debian/tmp/usr/lib/python3.14 debian/tmp/usr/lib/python3.15 debian/python3-cctbx//usr/lib/ install -m0755 -d debian/python3-cctbx//usr/lib/python3/dist-packages/cctbx/maptbx/bcr/ cp --reflink=auto -a ./cctbx/maptbx/bcr/CNOPSFeAu-6_1A_dist21.tab debian/python3-cctbx//usr/lib/python3/dist-packages/cctbx/maptbx/bcr// make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' dh_installdocs -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/usr/share/doc/libcctbx0 install -p -m0644 debian/copyright debian/libcctbx0/usr/share/doc/libcctbx0/copyright install -m0755 -d debian/libcctbx-dev/usr/share/doc/libcctbx-dev install -p -m0644 debian/copyright debian/libcctbx-dev/usr/share/doc/libcctbx-dev/copyright install -m0755 -d debian/python3-cctbx/usr/share/doc/python3-cctbx install -p -m0644 debian/copyright debian/python3-cctbx/usr/share/doc/python3-cctbx/copyright dh_installchangelogs -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/usr/share/doc/libcctbx0 install -p -m0644 debian/.debhelper/generated/libcctbx0/dh_installchangelogs.dch.trimmed debian/libcctbx0/usr/share/doc/libcctbx0/changelog.Debian install -p -m0644 debian/.debhelper/generated/libcctbx0/dh_installchangelogs.dch.binnmu debian/libcctbx0/usr/share/doc/libcctbx0/changelog.Debian.loong64 install -p -m0644 ./CHANGELOG.rst debian/libcctbx0/usr/share/doc/libcctbx0/changelog install -m0755 -d debian/python3-cctbx/usr/share/doc/python3-cctbx install -p -m0644 debian/.debhelper/generated/python3-cctbx/dh_installchangelogs.dch.trimmed debian/python3-cctbx/usr/share/doc/python3-cctbx/changelog.Debian install -p -m0644 debian/.debhelper/generated/python3-cctbx/dh_installchangelogs.dch.binnmu debian/python3-cctbx/usr/share/doc/python3-cctbx/changelog.Debian.loong64 install -p -m0644 ./CHANGELOG.rst debian/python3-cctbx/usr/share/doc/python3-cctbx/changelog install -m0755 -d debian/libcctbx-dev/usr/share/doc/libcctbx-dev install -p -m0644 debian/.debhelper/generated/libcctbx-dev/dh_installchangelogs.dch.trimmed debian/libcctbx-dev/usr/share/doc/libcctbx-dev/changelog.Debian install -p -m0644 debian/.debhelper/generated/libcctbx-dev/dh_installchangelogs.dch.binnmu debian/libcctbx-dev/usr/share/doc/libcctbx-dev/changelog.Debian.loong64 install -p -m0644 ./CHANGELOG.rst debian/libcctbx-dev/usr/share/doc/libcctbx-dev/changelog dh_python3 -a -O--buildsystem=pybuild D: dh_python3 dh_python3:87: version: 7.20261030 D: dh_python3 dh_python3:88: argv: ['/usr/bin/dh_python3', '-a', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:89: options: DHPythonOptions(O=['--buildsystem=pybuild'], accept_upstream_versions=False, allow_build_directory_module_name=False, allow_unmerged_dist_packages=False, arch=True, clean_dbg_pkg=True, compile_all=False, depends=[], depends_section=[], guess_deps=True, ignore_shebangs=False, no_ext_rename=False, no_package=[], no_shebang_rewrite=False, package=[], private_dir=None, recommends=[], recommends_section=[], regexpr=[], remaining_packages=False, requires=[], shebang=None, skip_private=False, suggests=[], suggests_section=[], verbose=True, vrange=None, write_log=False) D: dh_python3 dh_python3:90: supported Python versions: 3.14,3.15 (default=3.14) D: dh_python3 debhelper:219: skipping package libcctbx0 (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:219: skipping package libcctbx-dev (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:229: source=cctbx, binary packages=['python3-cctbx'] D: dh_python3 dh_python3:117: processing package python3-cctbx... D: dh_python3 fs:61: moving files from debian/python3-cctbx/usr/lib/python3.14/dist-packages to debian/python3-cctbx/usr/lib/python3/dist-packages/ D: dh_python3 tools:297: invoking: /usr/bin/python3.14 -c 'import sysconfig as s; print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))' I: dh_python3 fs:545: renaming dxtbx_masking_ext.so to dxtbx_masking_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_masks_ext.so to cctbx_masks_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_eltbx_neutron_ext.so to cctbx_eltbx_neutron_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cma_es_ext.so to cma_es_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming std_pair_ext.so to std_pair_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_lbfgs_ext.so to scitbx_lbfgs_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming iotbx_detectors_ext.so to iotbx_detectors_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_adaptbx_graph_min_cut_max_flow_ext.so to boost_adaptbx_graph_min_cut_max_flow_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_array_family_flex_ext.so to cctbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming smtbx_refinement_constraints_ext.so to smtbx_refinement_constraints_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_dynamics_ext.so to mmtbx_dynamics_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming spotfinder_array_family_flex_ext.so to spotfinder_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming spotfinder_dxtbx_ext.so to spotfinder_dxtbx_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming dxtbx_flumpy.so to dxtbx_flumpy.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming spotfinder_hough_ext.so to spotfinder_hough_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_merging_ext.so to cctbx_merging_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_xray_ext.so to cctbx_xray_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_f_model_ext.so to mmtbx_f_model_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_sgtbx_ext.so to cctbx_sgtbx_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_reduce_ext.so to mmtbx_reduce_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming spotfinder_distltbx_ext.so to spotfinder_distltbx_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_adaptbx_graph_metric_ext.so to boost_adaptbx_graph_metric_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_stl_vector_ext.so to scitbx_stl_vector_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_geometry_sphere_surface_sampling_ext.so to mmtbx_geometry_sphere_surface_sampling_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_python_meta_ext.so to boost_python_meta_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming rstbx_simulation_ext.so to rstbx_simulation_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_r3_utils_ext.so to scitbx_r3_utils_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming smtbx_structure_factors_direct_ext.so to smtbx_structure_factors_direct_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_wigner_ext.so to scitbx_wigner_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_eltbx_henke_ext.so to cctbx_eltbx_henke_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_uctbx_ext.so to cctbx_uctbx_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_bulk_solvent_ext.so to mmtbx_bulk_solvent_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming gltbx_fonts_ext.so to gltbx_fonts_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming iotbx_dtrek_ext.so to iotbx_dtrek_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming gltbx_gl_ext.so to gltbx_gl_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming gltbx_glu_ext.so to gltbx_glu_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_translation_search_ext.so to cctbx_translation_search_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_suffixtree_single_ext.so to scitbx_suffixtree_single_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_symmetry_search_ext.so to cctbx_symmetry_search_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_covariance_ext.so to cctbx_covariance_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming iotbx_dsn6_map_ext.so to iotbx_dsn6_map_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming iotbx_xplor_ext.so to iotbx_xplor_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming rstbx_simage_ext.so to rstbx_simage_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_eltbx_covalent_radii_ext.so to cctbx_eltbx_covalent_radii_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming fable_ext.so to fable_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming iotbx_pdb_ext.so to iotbx_pdb_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_pair_interaction_ext.so to mmtbx_pair_interaction_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming dxtbx_format_image_ext.so to dxtbx_format_image_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming rstbx_symmetry_constraints_ext.so to rstbx_symmetry_constraints_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_rational_ext.so to boost_rational_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_dssp_ext.so to mmtbx_dssp_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_adaptbx_graph_connected_component_algorithm_ext.so to boost_adaptbx_graph_connected_component_algorithm_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_glmtbx_ext.so to scitbx_glmtbx_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_tls_optimise_amplitudes_ext.so to mmtbx_tls_optimise_amplitudes_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_reference_coordinate_ext.so to mmtbx_reference_coordinate_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_adaptbx_graph_ext.so to boost_adaptbx_graph_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming determine_unit_cell_ext.so to determine_unit_cell_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_multipolar_ext.so to cctbx_multipolar_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming dxtbx_model_ext.so to dxtbx_model_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_array_family_flex_ext.so to scitbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_rsr_ext.so to mmtbx_rsr_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_graphics_utils_ext.so to scitbx_graphics_utils_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_eltbx_tiny_pse_ext.so to cctbx_eltbx_tiny_pse_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming rstbx_array_family_flex_ext.so to rstbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_eltbx_attenuation_coefficient_ext.so to cctbx_eltbx_attenuation_coefficient_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_linalg_ext.so to scitbx_linalg_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_math_ext.so to cctbx_math_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming iotbx_cif_ext.so to iotbx_cif_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_masks_ext.so to mmtbx_masks_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming dxtbx_ext.so to dxtbx_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming xcif_ext.so to xcif_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_ramachandran_restraints_ext.so to mmtbx_ramachandran_restraints_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_geometry_asa_ext.so to mmtbx_geometry_asa_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_eltbx_sasaki_ext.so to cctbx_eltbx_sasaki_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_lstbx_normal_equations_ext.so to scitbx_lstbx_normal_equations_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming dxtbx_format_nexus_ext.so to dxtbx_format_nexus_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_max_lik_ext.so to mmtbx_max_lik_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming omptbx_ext.so to omptbx_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming iotbx_scalepack_ext.so to iotbx_scalepack_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_french_wilson_ext.so to cctbx_french_wilson_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_tuple_ext.so to boost_tuple_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_geometry_shared_types_ext.so to mmtbx_geometry_shared_types_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_stl_map_ext.so to scitbx_stl_map_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_random_ext.so to scitbx_random_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_minpack_ext.so to scitbx_minpack_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_adaptbx_graph_maximum_clique_ext.so to boost_adaptbx_graph_maximum_clique_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_secondary_structure_ext.so to mmtbx_secondary_structure_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_geometry_primitive_ext.so to mmtbx_geometry_primitive_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_crystal_ext.so to cctbx_crystal_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming gltbx_viewer_utils_ext.so to gltbx_viewer_utils_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming smtbx_refinement_least_squares_ext.so to smtbx_refinement_least_squares_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming rstbx_integration_ext.so to rstbx_integration_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming smtbx_refinement_restraints_ext.so to smtbx_refinement_restraints_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_den_restraints_ext.so to mmtbx_den_restraints_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_validation_ramachandran_ext.so to mmtbx_validation_ramachandran_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming iotbx_mtz_ext.so to iotbx_mtz_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming smtbx_ab_initio_ext.so to smtbx_ab_initio_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_geometry_ext.so to cctbx_geometry_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming smtbx_array_family_ext.so to smtbx_array_family_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_adaptbx_boost_thread_test_ext.so to boost_adaptbx_boost_thread_test_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_building_loop_closure_ext.so to mmtbx_building_loop_closure_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_tls_utils_ext.so to mmtbx_tls_utils_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming rstbx_bandpass_ext.so to rstbx_bandpass_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_geometry_clash_ext.so to mmtbx_geometry_clash_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_sgtbx_asu_ext.so to cctbx_sgtbx_asu_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_cubicle_neighbors_ext.so to scitbx_cubicle_neighbors_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_maptbx_bcr_bcr_ext.so to cctbx_maptbx_bcr_bcr_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_dmtbx_ext.so to cctbx_dmtbx_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_probe_ext.so to mmtbx_probe_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_rigid_body_ext.so to scitbx_rigid_body_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming iotbx_pdb_hierarchy_ext.so to iotbx_pdb_hierarchy_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_array_family_shared_ext.so to scitbx_array_family_shared_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming rstbx_diffraction_fastbragg_ext.so to rstbx_diffraction_fastbragg_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming smtbx_stl_map_ext.so to smtbx_stl_map_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_python_hybrid_times_ext.so to boost_python_hybrid_times_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_asymmetric_map_ext.so to cctbx_asymmetric_map_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_tls_ext.so to mmtbx_tls_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_geometry_indexing_ext.so to mmtbx_geometry_indexing_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_maptbx_ext.so to cctbx_maptbx_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cbflib_ext.so to cbflib_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming regression_test_ext.so to regression_test_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_suffixtree_shared_ext.so to scitbx_suffixtree_shared_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_xray_observations_ext.so to cctbx_xray_observations_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_eltbx_xray_scattering_ext.so to cctbx_eltbx_xray_scattering_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming annlib_ext.so to annlib_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_math_ext.so to scitbx_math_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_statistics_ext.so to cctbx_statistics_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_adaptbx_python_streambuf_test_ext.so to boost_adaptbx_python_streambuf_test_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_miller_ext.so to cctbx_miller_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_anharmonic_ext.so to cctbx_anharmonic_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming iotbx_ccp4_map_ext.so to iotbx_ccp4_map_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming rstbx_indexing_api_ext.so to rstbx_indexing_api_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming iotbx_detectors_bruker_ext.so to iotbx_detectors_bruker_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming gltbx_util_ext.so to gltbx_util_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_optional_ext.so to boost_optional_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_mosaic_ext.so to mmtbx_mosaic_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming iotbx_wildcard_ext.so to iotbx_wildcard_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_eltbx_wavelengths_ext.so to cctbx_eltbx_wavelengths_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_stl_set_ext.so to scitbx_stl_set_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming gltbx_quadrics_ext.so to gltbx_quadrics_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming rstbx_ext.so to rstbx_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming iotbx_shelx_ext.so to iotbx_shelx_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_adaptbx_graph_graph_structure_comparison_ext.so to boost_adaptbx_graph_graph_structure_comparison_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_eltbx_icsd_radii_ext.so to cctbx_eltbx_icsd_radii_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_eltbx_chemical_elements_ext.so to cctbx_eltbx_chemical_elements_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_orientation_ext.so to cctbx_orientation_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_tls_decompose_ext.so to mmtbx_tls_decompose_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_fftpack_ext.so to scitbx_fftpack_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_adaptbx_graph_clustering_algorithm_ext.so to boost_adaptbx_graph_clustering_algorithm_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_hydrogens_ext.so to mmtbx_hydrogens_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_iso_surface_ext.so to scitbx_iso_surface_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_adaptbx_graph_utility_ext.so to boost_adaptbx_graph_utility_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_utils_ext.so to mmtbx_utils_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_ncs_ext.so to mmtbx_ncs_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming rstbx_bpcx_detector_model_ext.so to rstbx_bpcx_detector_model_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_ncs_cartesian_restraints_ext.so to mmtbx_ncs_cartesian_restraints_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_scaling_ext.so to mmtbx_scaling_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_emma_ext.so to cctbx_emma_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_adaptbx_graph_breadth_first_search_ext.so to boost_adaptbx_graph_breadth_first_search_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_alignment_ext.so to mmtbx_alignment_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming dxtbx_imageset_ext.so to dxtbx_imageset_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_geometry_restraints_ext.so to cctbx_geometry_restraints_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_adptbx_ext.so to cctbx_adptbx_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_rotamer_fit_ext.so to mmtbx_rotamer_fit_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_lbfgsb_ext.so to scitbx_lbfgsb_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_eltbx_fp_fdp_ext.so to cctbx_eltbx_fp_fdp_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_adp_restraints_ext.so to cctbx_adp_restraints_ext.cpython-314-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_sparse_ext.so to scitbx_sparse_ext.cpython-314-loongarch64-linux-gnu.so D: dh_python3 fs:61: moving files from debian/python3-cctbx/usr/lib/python3.15/dist-packages to debian/python3-cctbx/usr/lib/python3/dist-packages/ D: dh_python3 tools:297: invoking: /usr/bin/python3.15 -c 'import sysconfig as s; print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))' I: dh_python3 fs:545: renaming dxtbx_masking_ext.so to dxtbx_masking_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_masks_ext.so to cctbx_masks_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_eltbx_neutron_ext.so to cctbx_eltbx_neutron_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cma_es_ext.so to cma_es_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming std_pair_ext.so to std_pair_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_lbfgs_ext.so to scitbx_lbfgs_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming iotbx_detectors_ext.so to iotbx_detectors_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_adaptbx_graph_min_cut_max_flow_ext.so to boost_adaptbx_graph_min_cut_max_flow_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_array_family_flex_ext.so to cctbx_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming smtbx_refinement_constraints_ext.so to smtbx_refinement_constraints_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_dynamics_ext.so to mmtbx_dynamics_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming spotfinder_array_family_flex_ext.so to spotfinder_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming spotfinder_dxtbx_ext.so to spotfinder_dxtbx_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming dxtbx_flumpy.so to dxtbx_flumpy.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming spotfinder_hough_ext.so to spotfinder_hough_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_merging_ext.so to cctbx_merging_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_xray_ext.so to cctbx_xray_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_f_model_ext.so to mmtbx_f_model_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_sgtbx_ext.so to cctbx_sgtbx_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_reduce_ext.so to mmtbx_reduce_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming spotfinder_distltbx_ext.so to spotfinder_distltbx_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_adaptbx_graph_metric_ext.so to boost_adaptbx_graph_metric_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_stl_vector_ext.so to scitbx_stl_vector_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_geometry_sphere_surface_sampling_ext.so to mmtbx_geometry_sphere_surface_sampling_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_python_meta_ext.so to boost_python_meta_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming rstbx_simulation_ext.so to rstbx_simulation_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_r3_utils_ext.so to scitbx_r3_utils_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming smtbx_structure_factors_direct_ext.so to smtbx_structure_factors_direct_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_wigner_ext.so to scitbx_wigner_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_eltbx_henke_ext.so to cctbx_eltbx_henke_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_uctbx_ext.so to cctbx_uctbx_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_bulk_solvent_ext.so to mmtbx_bulk_solvent_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming gltbx_fonts_ext.so to gltbx_fonts_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming iotbx_dtrek_ext.so to iotbx_dtrek_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming gltbx_gl_ext.so to gltbx_gl_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming gltbx_glu_ext.so to gltbx_glu_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_translation_search_ext.so to cctbx_translation_search_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_suffixtree_single_ext.so to scitbx_suffixtree_single_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_symmetry_search_ext.so to cctbx_symmetry_search_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_covariance_ext.so to cctbx_covariance_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming iotbx_dsn6_map_ext.so to iotbx_dsn6_map_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming iotbx_xplor_ext.so to iotbx_xplor_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming rstbx_simage_ext.so to rstbx_simage_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_eltbx_covalent_radii_ext.so to cctbx_eltbx_covalent_radii_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming fable_ext.so to fable_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming iotbx_pdb_ext.so to iotbx_pdb_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_pair_interaction_ext.so to mmtbx_pair_interaction_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming dxtbx_format_image_ext.so to dxtbx_format_image_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming rstbx_symmetry_constraints_ext.so to rstbx_symmetry_constraints_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_rational_ext.so to boost_rational_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_dssp_ext.so to mmtbx_dssp_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_adaptbx_graph_connected_component_algorithm_ext.so to boost_adaptbx_graph_connected_component_algorithm_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_glmtbx_ext.so to scitbx_glmtbx_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_tls_optimise_amplitudes_ext.so to mmtbx_tls_optimise_amplitudes_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_reference_coordinate_ext.so to mmtbx_reference_coordinate_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_adaptbx_graph_ext.so to boost_adaptbx_graph_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming determine_unit_cell_ext.so to determine_unit_cell_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_multipolar_ext.so to cctbx_multipolar_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming dxtbx_model_ext.so to dxtbx_model_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_array_family_flex_ext.so to scitbx_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_rsr_ext.so to mmtbx_rsr_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_graphics_utils_ext.so to scitbx_graphics_utils_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_eltbx_tiny_pse_ext.so to cctbx_eltbx_tiny_pse_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming rstbx_array_family_flex_ext.so to rstbx_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_eltbx_attenuation_coefficient_ext.so to cctbx_eltbx_attenuation_coefficient_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_linalg_ext.so to scitbx_linalg_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_math_ext.so to cctbx_math_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming iotbx_cif_ext.so to iotbx_cif_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_masks_ext.so to mmtbx_masks_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming dxtbx_ext.so to dxtbx_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming xcif_ext.so to xcif_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_ramachandran_restraints_ext.so to mmtbx_ramachandran_restraints_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_geometry_asa_ext.so to mmtbx_geometry_asa_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_eltbx_sasaki_ext.so to cctbx_eltbx_sasaki_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_lstbx_normal_equations_ext.so to scitbx_lstbx_normal_equations_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming dxtbx_format_nexus_ext.so to dxtbx_format_nexus_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_max_lik_ext.so to mmtbx_max_lik_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming omptbx_ext.so to omptbx_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming iotbx_scalepack_ext.so to iotbx_scalepack_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_french_wilson_ext.so to cctbx_french_wilson_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_tuple_ext.so to boost_tuple_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_geometry_shared_types_ext.so to mmtbx_geometry_shared_types_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_stl_map_ext.so to scitbx_stl_map_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_random_ext.so to scitbx_random_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_minpack_ext.so to scitbx_minpack_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_adaptbx_graph_maximum_clique_ext.so to boost_adaptbx_graph_maximum_clique_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_secondary_structure_ext.so to mmtbx_secondary_structure_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_geometry_primitive_ext.so to mmtbx_geometry_primitive_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_crystal_ext.so to cctbx_crystal_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming gltbx_viewer_utils_ext.so to gltbx_viewer_utils_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming smtbx_refinement_least_squares_ext.so to smtbx_refinement_least_squares_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming rstbx_integration_ext.so to rstbx_integration_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming smtbx_refinement_restraints_ext.so to smtbx_refinement_restraints_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_den_restraints_ext.so to mmtbx_den_restraints_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_validation_ramachandran_ext.so to mmtbx_validation_ramachandran_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming iotbx_mtz_ext.so to iotbx_mtz_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming smtbx_ab_initio_ext.so to smtbx_ab_initio_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_geometry_ext.so to cctbx_geometry_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming smtbx_array_family_ext.so to smtbx_array_family_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_adaptbx_boost_thread_test_ext.so to boost_adaptbx_boost_thread_test_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_building_loop_closure_ext.so to mmtbx_building_loop_closure_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_tls_utils_ext.so to mmtbx_tls_utils_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming rstbx_bandpass_ext.so to rstbx_bandpass_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_geometry_clash_ext.so to mmtbx_geometry_clash_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_sgtbx_asu_ext.so to cctbx_sgtbx_asu_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_cubicle_neighbors_ext.so to scitbx_cubicle_neighbors_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_maptbx_bcr_bcr_ext.so to cctbx_maptbx_bcr_bcr_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_dmtbx_ext.so to cctbx_dmtbx_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_probe_ext.so to mmtbx_probe_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_rigid_body_ext.so to scitbx_rigid_body_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming iotbx_pdb_hierarchy_ext.so to iotbx_pdb_hierarchy_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_array_family_shared_ext.so to scitbx_array_family_shared_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming rstbx_diffraction_fastbragg_ext.so to rstbx_diffraction_fastbragg_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming smtbx_stl_map_ext.so to smtbx_stl_map_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_python_hybrid_times_ext.so to boost_python_hybrid_times_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_asymmetric_map_ext.so to cctbx_asymmetric_map_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_tls_ext.so to mmtbx_tls_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_geometry_indexing_ext.so to mmtbx_geometry_indexing_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_maptbx_ext.so to cctbx_maptbx_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cbflib_ext.so to cbflib_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming regression_test_ext.so to regression_test_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_suffixtree_shared_ext.so to scitbx_suffixtree_shared_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_xray_observations_ext.so to cctbx_xray_observations_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_eltbx_xray_scattering_ext.so to cctbx_eltbx_xray_scattering_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming annlib_ext.so to annlib_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_math_ext.so to scitbx_math_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_statistics_ext.so to cctbx_statistics_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_adaptbx_python_streambuf_test_ext.so to boost_adaptbx_python_streambuf_test_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_miller_ext.so to cctbx_miller_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_anharmonic_ext.so to cctbx_anharmonic_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming iotbx_ccp4_map_ext.so to iotbx_ccp4_map_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming rstbx_indexing_api_ext.so to rstbx_indexing_api_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming iotbx_detectors_bruker_ext.so to iotbx_detectors_bruker_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming gltbx_util_ext.so to gltbx_util_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_optional_ext.so to boost_optional_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_mosaic_ext.so to mmtbx_mosaic_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming iotbx_wildcard_ext.so to iotbx_wildcard_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_eltbx_wavelengths_ext.so to cctbx_eltbx_wavelengths_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_stl_set_ext.so to scitbx_stl_set_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming gltbx_quadrics_ext.so to gltbx_quadrics_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming rstbx_ext.so to rstbx_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming iotbx_shelx_ext.so to iotbx_shelx_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_adaptbx_graph_graph_structure_comparison_ext.so to boost_adaptbx_graph_graph_structure_comparison_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_eltbx_icsd_radii_ext.so to cctbx_eltbx_icsd_radii_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_eltbx_chemical_elements_ext.so to cctbx_eltbx_chemical_elements_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_orientation_ext.so to cctbx_orientation_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_tls_decompose_ext.so to mmtbx_tls_decompose_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_fftpack_ext.so to scitbx_fftpack_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_adaptbx_graph_clustering_algorithm_ext.so to boost_adaptbx_graph_clustering_algorithm_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_hydrogens_ext.so to mmtbx_hydrogens_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_iso_surface_ext.so to scitbx_iso_surface_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_adaptbx_graph_utility_ext.so to boost_adaptbx_graph_utility_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_utils_ext.so to mmtbx_utils_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_ncs_ext.so to mmtbx_ncs_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming rstbx_bpcx_detector_model_ext.so to rstbx_bpcx_detector_model_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_ncs_cartesian_restraints_ext.so to mmtbx_ncs_cartesian_restraints_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_scaling_ext.so to mmtbx_scaling_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_emma_ext.so to cctbx_emma_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming boost_adaptbx_graph_breadth_first_search_ext.so to boost_adaptbx_graph_breadth_first_search_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_alignment_ext.so to mmtbx_alignment_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming dxtbx_imageset_ext.so to dxtbx_imageset_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_geometry_restraints_ext.so to cctbx_geometry_restraints_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_adptbx_ext.so to cctbx_adptbx_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming mmtbx_rotamer_fit_ext.so to mmtbx_rotamer_fit_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_lbfgsb_ext.so to scitbx_lbfgsb_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_eltbx_fp_fdp_ext.so to cctbx_eltbx_fp_fdp_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming cctbx_adp_restraints_ext.so to cctbx_adp_restraints_ext.cpython-315-loongarch64-linux-gnu.so I: dh_python3 fs:545: renaming scitbx_sparse_ext.so to scitbx_sparse_ext.cpython-315-loongarch64-linux-gnu.so D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fab_elbow_angle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.show_sizes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.split_models): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.altloc_remediate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.hbond): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_windows_exe): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_model_distances): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cxi.image_average): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_full_command_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb_remediator): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bash): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.xtriage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_variable_names): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.cablam): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reindex): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.symmetry_search): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_cif_conversion): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.inexact): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.index): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.gdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/sphinx.build): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/samosa.scale): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.barbed_wire_analysis): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.mtz.dump): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.unpack_in_sources): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_old_style_classes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.valgrind): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.sh): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.process_predicted_model): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.refine): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.run_pickled_function): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cablam): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/distl.signal_strength): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/xcif.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.compare_datasets): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/annlib.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.split_data_cif): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_reserved_names): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_not_show_diff): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.map_to_structure_factors): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/serialtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.space_group_info): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_stdin_does_not_contain_strings): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.simple_map_coefficients): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.simage.wx_display): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/gltbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.sge_available_slots): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.tls): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_environ_usage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rna_validate_suites): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.print_matching_images): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.make_sphinx_html): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.insert_write_at_start_of_each_procedure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.feature_enhanced_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif.validate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.image2pickle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.find_distances): cannot parse binary file D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.divide_by_zero): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_tests): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.printenv): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.int_overflow): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.unicode_examples): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.unique_with_biomt): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cbflib.tst_memory): cannot parse binary file D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.super): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.shelx.as_cif): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reduce_cryoem_resolution): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.superpose_centers_of_mass): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fft): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_pythonpath): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_vs_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.parallel_simple): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.validation_summary): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fmodel): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/annlib.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.seconds_since_the_epoch): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.quantum_interface): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.reindent): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.fem_include_search_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.HKLinfo): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rna_validate_suites): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.simage.create): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.image_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.pdb_interpretation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.inspect_r_free_flags): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.data_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.r_factor_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_selfx): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.undowser2_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.omegalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.list_modules): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.qttbx.view_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.bfactor_plot): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.list_source_files_sorted_by_size): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.show_r_factors_by_shell): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.sort_atoms): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.development.valence_simple): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_build_options): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.image_average): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb.biomt_reconstruction): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.remove_unused_imports): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.HKLviewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.cod_select_and_pickle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.select_best_starting_model): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/omptbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.plot_detector_models): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.remote_processing): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.merging_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.prune_model): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.install_format): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb_as_fasta): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.density_modification): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_install_script_bat): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif.as_miller_arrays): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.reflection_file_converter): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.find_peaks_holes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.analyse_code_comments): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_include_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_cctbx_bundle_for_installer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.secondary_structure_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_under_build): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cns.sdb_reader): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.subgroups): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.reduce2): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mp_validate_bonds): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cns.transfer_crystal_symmetry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bibtex): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/gltbx.try_imports): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/xcif.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.undowser2_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif_as_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.patterson_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.kinemage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/omptbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.plot_anomalous_scattering): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.find_peaks_holes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.development.electrons): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cns_as_mtz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.maximum_entropy_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.version): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_numpy_version): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.development.aev): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry): cannot parse binary file D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.diffuse): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/ccp4io.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mtz_as_cif): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.link_as_geometry_restraints_edits): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.show_distances): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups): cannot parse binary file D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cbflib.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.poscar_as_xray_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.suitename_old): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.show_systematic_absences): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.massage_data): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_registry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_stdin_ends_with): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.arginine_geometry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.prepare_pdb_deposition): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.xtriage_gui): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bootstrap): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rna_validate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.fetch_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.display_parallax_correction): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.ss_idealization): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.TAAM_minus_IAM): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.TAAM_minus_IAM): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.rigid_bond_test): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rna_validate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.blast_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.lattice_symmetry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.probescore_ligand): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.show_file_info): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/distl.find_active_area): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.apply_tapenade_hints): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.r_free_flags_completion_simple): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.validate_ligands): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.polder): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/serialtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.tls_as_xyz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.french_wilson): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.emringer_score): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.dano_as_amplitudes): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.rama_z): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.help): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites): cannot parse binary file D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_clutter): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/distl.sweep_strength): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.r_free_flags_accumulation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_repository_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.superpose_atoms_by_name): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.clashscore): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.plan_sad_experiment): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.suitename): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.development.xtrapol8): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/spotfinder.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.any2unix): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.mon_lib_cif_triage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.debugging.hydrogenate): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rama_z): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.maps): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.precession_view): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/omptbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.chiral_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cbflib.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.latex): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.get_pubmed_citation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.print_sequence): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.undowser_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.absolute_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cns.reflection_reader): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost.lcm): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.crystal_symmetry_from_any): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.estimate_bijvoet_ratio): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mask): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.depends_on): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.validate_H): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/annlib.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_stdin_contains_strings): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mtz2map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_in_repositories): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.make_dist): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.getting_started): cannot parse binary file D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_untested): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rna_validate_puckers): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.mtz.dump): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rotalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rna_validate_bonds): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dev.dxtbx.simulate_collection): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.HKLinfo): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.search_pdb_symmetry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cma_es.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.chunk): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.rebuild_cablam_cache): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.development.the_run_down): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.resolution): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.shelx.as_xray_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_editor): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb.b_factor_stats): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.cout): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.xmanip): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.visualize_r_factors): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.box_around_molecule): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.show_platform_info): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.find_residue_in_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_commands): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reflection_file_converter): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.map_comparison): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.multiplicity_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.emma): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.dtrek.to_cns): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.distance_difference): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.development.water_b_factors): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.detector_superpose): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_line_count): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.development.next_gen_atom_typing): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.reflection_file_editor): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.pdflatex): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.holton_geometry_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.nequal): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/distl.image_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phasertng.HKLviewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.any2nexus): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.sisa): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cma_es.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.line_count): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.phil): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_mask_info): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cbflib.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb_labels_comparison): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.loggraph): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.omegalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.add_conformations): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_vs_sequence): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.check_libcpp): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/labelit.png): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dev.dxtbx.debug_memory): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.find_reticular_twin_laws): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_as_cif): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.model_vs_sequence): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_date_and_time): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.mp_geo): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.plan_sad_experiment): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.print_header): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.raise_exception_for_testing): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.HKLviewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cablam_idealization): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.clashscore2): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdbtools): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.histogram): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cbf.dump): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.dlsnxs2cbf): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.apply_ncs_to_ligand): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.clashscore2): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.reflection_file_reader): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/distl.mp_spotfinder_server_read_file): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.process_predicted_model): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/spotfinder.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.r_free_flags_as_cns): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.wait_for_file): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.join_fragment_files): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.shelx.dump_as_python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cxi.image2pickle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.start_process): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.merging_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.easy_qsub): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.insert_scale_records): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.barbed_wire_analysis): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.epydoc_run): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.rebuild_rotarama_cache): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.explore_metric_symmetry): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.kinemage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.probe2): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.import_all_python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.models_as_chains): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.debugging.riding): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.euclidean_model_matching): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cbf_read): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.import_all_ext): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cif_as_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.model_vs_data): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.refresh): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.ramalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.build_phil_cache): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reflection_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.nested_cpp_loops_with_check_signals): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx_regression.test_nightly): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/serialtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.suitename): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.model_idealization): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.undowser2_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_installer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.csh): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.dynamics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.dtrace): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.structure_factor_timings): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.emringer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.geometry_minimization): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.image_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.development.qscore): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.segment_and_split_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.auto_sharpen): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.show_exp_times): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb.hierarchy): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.radial_average): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cbetadev): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.anom_refine): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.web.install): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.as_xray_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.cbetadev): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.read): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.model_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_env): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.double_overflow): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/gltbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.phil): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.py_compile_all): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.validate_ligands): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.tcsh): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.wavelength_units): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.tls_analysis): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cif_as_mtz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb.mtrix_reconstruction): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.show_matching_formats): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.show_connectivity): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.development.ligand_restraints_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.clean_clutter): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/ccp4io.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.clashscore2): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.benchmark_refinement): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_lib_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.french_wilson): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.install): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fake_f_obs): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.sge_qstat_counts): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.show_environ_usage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/crys3d.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.comparama): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.simage.solver): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx_blobs): cannot parse binary file D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.path_utility): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.verify_mon_lib_data): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_host_and_user): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_bin_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.wxpython): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dev.dxtbx.read_sequence): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rna_validate_bonds): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bundle_as_selfx): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.data_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_all_on_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.make_install_HKLviewer_ChimeraX): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.form_factor_query): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib): cannot parse binary file D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.show_calls): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.start_binary_bundle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.env_run): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.extract_code_from_txt): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/scitbx.generate_error_h): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.exec): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.nonbonded_overlaps): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.reduce_cryoem_resolution): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.xtriage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.export_scalepack_unmerged): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.cc_star): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.ringer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.list_files): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.xtriage): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_numeric_version): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.resource_monitor_plot): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.rotalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/ccp4io.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_atom_selection): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_mac_app): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost_adaptbx.segmentation_fault): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/spotfinder.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.superpose): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fobs_minus_fobs_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fetch_pdb): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.run_tests_parallel): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.refine_anomalous_substructure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.distance_least_squares): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/samosa.join): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.reciprocal_space_arrays): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cma_es.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_files): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.get_citation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.file_reader): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.where_is_that_cif_file): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif_as_mtz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.suitename_old): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dev.dxtbx.image_availability): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.table_one): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.molprobity): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.undowser_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.angle): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/gltbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.git_avoid_merges): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.remove_tree): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.prime_factors_of): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.cif.as_xray_structure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/fable.split): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.real_space_diff_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.add_docstrings_with_ai): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb.flip_symmetric_amino_acids): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.xplor.map.show_summary): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.perigee): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_dist_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.scons): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.configure): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/wxtbx.anomalous_differences_histogram): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.remove_outliers): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.pdb_interpretation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.assert_stdin): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.csv_as_mtz): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/rstbx.simage.explore_completeness): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.matthews): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/xcif.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.suitename): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.create_unzipsfx): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.grow_density): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_number_of_processors): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.bundle_as_exe): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/smtbx.masks): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.f000): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.holton_geometry_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.map_box): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_unused_imports_crude): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_module_dependencies): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_unused_imports): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_python_sys_executable): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.real_space_correlation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.suitename_old): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.clear_paths): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.clashscore): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.install_conda): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.molprobity): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.eltbx.show_fp_fdp): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.emma): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.overload): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.helix_sheet_recs_as_pdb_files): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/boost.gcd): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.ramalyze): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.find_pdb_mmcif_problems): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.secondary_structure_restraints): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_but_no_repr): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.map_to_model_histogram): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.unique_with_biomt): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/molprobity.mp_validate_bonds): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rna_validate_puckers): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.find_tls_groups): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.rank_scale_map): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.sort_hetatms): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.ribbons): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.fem): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.pdb_statistics): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/libtbx.show_python_dependencies): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/mmtbx.fft): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.chiral_validation): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.brehm_diederichs): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/iotbx.pdb_labels_diff): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.python): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/cctbx.show_build_path): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/phenix.example_viewer): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/distl.thin_client): doesn't look like a shebang: #! /bin/sh D: dh_python3 tools:116: fix_shebang (debian/python3-cctbx/usr/bin/dxtbx.saturation): doesn't look like a shebang: #! /bin/sh D: dh_python3 fs:197: Writing INSTALLER in debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx-2023.12.dist-info D: dh_python3 fs:209: Deleting WHEEL and RECORD in debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx-2023.12.dist-info D: dh_python3 fs:197: Writing INSTALLER in debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx-3.30.0.dist-info D: dh_python3 fs:209: Deleting WHEEL and RECORD in debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx-3.30.0.dist-info D: dh_python3 fs:435: package python3-cctbx details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': {'debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx-3.30.0.dist-info/METADATA', 'debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx-2023.12.dist-info/METADATA'}, 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.14'), Version('3.15')}, 'ext_stableabi': set(), 'ext_no_version': set()} D: dh_python3 depends:148: generating dependencies for package python3-cctbx D: dh_python3 pydist:237: trying to find dependency for hdf5plugin (python=None) D: dh_python3 pydist:281: dependency: module hdf5plugin is known to pydist: [PyDist(name='hdf5plugin', versions={Version('3.14'), Version('3.15')}, dependency='python3-hdf5plugin', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for h5py (python=None) D: dh_python3 pydist:281: dependency: module h5py is known to pydist: [PyDist(name='h5py', versions={Version('3.14'), Version('3.15')}, dependency='python3-h5py', standard='PEP386', rules=[]), PyDist(name='h5py', versions={Version('3.14'), Version('3.15')}, dependency='python3-h5py', standard=None, rules=[])] D: dh_python3 pydist:358: dependency: included in build-deps with limits D: dh_python3 pydist:237: trying to find dependency for numpy (python=None) D: dh_python3 pydist:281: dependency: module numpy is known to pydist: [PyDist(name='numpy', versions={Version('3.14'), Version('3.15')}, dependency='python3-numpy', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for matplotlib (python=None) D: dh_python3 pydist:281: dependency: module matplotlib is known to pydist: [PyDist(name='matplotlib', versions={Version('3.14'), Version('3.15')}, dependency='python3-matplotlib', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for mrcfile (python=None) D: dh_python3 pydist:281: dependency: module mrcfile is known to pydist: [PyDist(name='mrcfile', versions={Version('3.14'), Version('3.15')}, dependency='python3-mrcfile', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for natsort (python=None) D: dh_python3 pydist:281: dependency: module natsort is known to pydist: [PyDist(name='natsort', versions={Version('3.14'), Version('3.15')}, dependency='python3-natsort', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for nxmx (python=None) D: dh_python3 pydist:281: dependency: module nxmx is known to pydist: [PyDist(name='nxmx', versions={Version('3.14'), Version('3.15')}, dependency='python3-nxmx', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for ordered_set (python=None) D: dh_python3 pydist:281: dependency: module ordered-set is known to pydist: [PyDist(name='ordered-set', versions={Version('3.14'), Version('3.15')}, dependency='python3-ordered-set', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for pint (python=None) D: dh_python3 pydist:281: dependency: module pint is known to pydist: [PyDist(name='pint', versions={Version('3.14'), Version('3.15')}, dependency='python3-pint', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for procrunner (python=None) D: dh_python3 pydist:281: dependency: module procrunner is known to pydist: [PyDist(name='procrunner', versions={Version('3.14'), Version('3.15')}, dependency='python3-procrunner', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for pymol (python=None) D: dh_python3 pydist:281: dependency: module pymol is known to pydist: [PyDist(name='pymol', versions={Version('3.14'), Version('3.15')}, dependency='python3-pymol', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for requests (python=None) D: dh_python3 pydist:281: dependency: module requests is known to pydist: [PyDist(name='requests', versions={Version('3.14'), Version('3.15')}, dependency='python3-requests', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for scipy (python=None) D: dh_python3 pydist:281: dependency: module scipy is known to pydist: [PyDist(name='scipy', versions={Version('3.14'), Version('3.15')}, dependency='python3-scipy', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for six (python=None) D: dh_python3 pydist:281: dependency: module six is known to pydist: [PyDist(name='six', versions={Version('3.14'), Version('3.15')}, dependency='python3-six', standard='PEP386', rules=[]), PyDist(name='six', versions={Version('3.14'), Version('3.15')}, dependency='python3-six', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for PIL (python=None) D: dh_python3 pydist:281: dependency: module pil is known to pydist: [PyDist(name='pil', versions={Version('3.14'), Version('3.15')}, dependency='python3-pil', standard=None, rules=[]), PyDist(name='pil', versions={Version('3.14'), Version('3.15')}, dependency='python3-pil', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for tqdm (python=None) D: dh_python3 pydist:281: dependency: module tqdm is known to pydist: [PyDist(name='tqdm', versions={Version('3.14'), Version('3.15')}, dependency='python3-tqdm', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 pydist:237: trying to find dependency for wxPython (python=None) D: dh_python3 pydist:281: dependency: module wxpython is known to pydist: [PyDist(name='wxpython', versions={Version('3.14'), Version('3.15')}, dependency='python3-wxgtk4.0', standard=None, rules=[])] D: dh_python3 pydist:365: dependency: included in build-deps D: dh_python3 depends:330: D={'python3-matplotlib', 'python3-h5py (>= 3)', 'python3-scipy', 'python3:any', 'python3-wxgtk4.0', 'python3-pint', 'python3-ordered-set', 'python3-numpy', 'python3-six', 'python3-pil', 'python3-requests', 'python3-nxmx', 'python3-mrcfile', 'python3-pymol', 'python3 (<< 3.16)', 'python3-hdf5plugin', 'python3 (>= 3.14~)', 'python3-procrunner', 'python3-natsort', 'python3-tqdm'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -a -O--buildsystem=pybuild dh_lintian -a -O--buildsystem=pybuild install -m0755 -d debian/python3-cctbx/usr/share/lintian/overrides install -p -m0644 debian/python3-cctbx.lintian-overrides debian/python3-cctbx/usr/share/lintian/overrides/python3-cctbx dh_perl -a -O--buildsystem=pybuild rm -f debian/libcctbx-dev.debhelper.log debian/libcctbx0.debhelper.log debian/python3-cctbx.debhelper.log debian/rules override_dh_link make[1]: Entering directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' dh_auto_build -- -s custom --build-args="dh_link -p libcctbx-dev usr/include/cctbx usr/lib/cctbx/python{version}/include" pybuild --build -i python{version} -p "3.15 3.14" -s custom --build-args="dh_link -p libcctbx-dev usr/include/cctbx usr/lib/cctbx/python{version}/include" --parallel=8 I: pybuild base:383: dh_link -p libcctbx-dev usr/include/cctbx usr/lib/cctbx/python3.15/include rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so ln -s libscitbx_slatec.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so ln -s libmmtbx_masks.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so ln -s libiotbx_mtz.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libspotfinder.so ln -s libspotfinder.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libspotfinder.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so ln -s libiotbx_xplor.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libann_adaptor.so ln -s libann_adaptor.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libann_adaptor.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/librstbx.so ln -s librstbx.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/librstbx.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libxcif.so ln -s libxcif.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libxcif.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libomptbx.so ln -s libomptbx.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libomptbx.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so ln -s libmmtbx_tls.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so ln -s libscitbx_boost_python.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so ln -s libscitbx_minpack.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libasymmetric_map.so ln -s libasymmetric_map.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libasymmetric_map.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libccp4io.so ln -s libccp4io.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libccp4io.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so ln -s libdxtbxspotfinder.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libcbf-private.so ln -s libcbf-private.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libcbf-private.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libcctbx.so ln -s libcctbx.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libcctbx.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so ln -s libiotbx_pdb.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so ln -s libsmtbx_refinement_constraints.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so ln -s libcctbx_sgtbx_asu.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so install -m0755 -d debian/libcctbx-dev/usr/lib/cctbx/python3.15 rm -f debian/libcctbx-dev/usr/lib/cctbx/python3.15/include ln -s ../../../include/cctbx debian/libcctbx-dev/usr/lib/cctbx/python3.15/include I: pybuild base:383: dh_link -p libcctbx-dev usr/include/cctbx usr/lib/cctbx/python3.14/include rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so ln -s libscitbx_slatec.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so ln -s libmmtbx_masks.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so ln -s libiotbx_mtz.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libspotfinder.so ln -s libspotfinder.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libspotfinder.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so ln -s libiotbx_xplor.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libann_adaptor.so ln -s libann_adaptor.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libann_adaptor.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/librstbx.so ln -s librstbx.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/librstbx.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libxcif.so ln -s libxcif.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libxcif.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libomptbx.so ln -s libomptbx.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libomptbx.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so ln -s libmmtbx_tls.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so ln -s libscitbx_boost_python.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so ln -s libscitbx_minpack.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libasymmetric_map.so ln -s libasymmetric_map.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libasymmetric_map.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libccp4io.so ln -s libccp4io.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libccp4io.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so ln -s libdxtbxspotfinder.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libcbf-private.so ln -s libcbf-private.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libcbf-private.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libcctbx.so ln -s libcctbx.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libcctbx.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so ln -s libiotbx_pdb.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so ln -s libsmtbx_refinement_constraints.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so rm -f debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so ln -s libcctbx_sgtbx_asu.so.0.0.1 debian/libcctbx-dev/usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so rm -f debian/libcctbx-dev/usr/lib/cctbx/python3.15/include ln -s ../../../include/cctbx debian/libcctbx-dev/usr/lib/cctbx/python3.15/include install -m0755 -d debian/libcctbx-dev/usr/lib/cctbx/python3.14 rm -f debian/libcctbx-dev/usr/lib/cctbx/python3.14/include ln -s ../../../include/cctbx debian/libcctbx-dev/usr/lib/cctbx/python3.14/include make[1]: Leaving directory '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' dh_strip_nondeterminism -a -O--buildsystem=pybuild Using 1791228809 as canonical time Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/I_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/D1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Zn_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/B_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cl_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Co_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/F_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cl_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/K1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ag2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ba2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Pt_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ag1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Al3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/D_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/C_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Li1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cu1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Se_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ag_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Fe2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Au_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/O2-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Na_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mg2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Hg1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/ebi_blast.xml.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx/bioinformatics/test/ncbi_blast.xml.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mo_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Si4+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ti_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Fe_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Al_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Hg_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Al_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ni2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/B_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cl1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Se_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ca2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mo_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/O_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mg_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ag_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cd_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Na_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Pt2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ni_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/T1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Fe3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/F1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Hg2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mn3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mo6+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cd_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/H_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/H1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mn_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Na1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Co3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cr3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/C_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/O_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ca_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/O1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cr_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/P_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ca_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/S_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Fe_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Au1+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mn_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Co2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ti2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cu_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Zn_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ba_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cr2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cd2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/I_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Li_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Pt4+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ba_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ti3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/F_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Hg_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mn4+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Si_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mg_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cu2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Au3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mo5+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Co_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Si_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/N_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Br_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Au_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ti_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/H_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/K_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/I1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mo3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/T_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/S_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cu_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Zn2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/P_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Cr_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ti4+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Li_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/K_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Mn2+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ni_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Pt_electron.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Br1-_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Ni3+_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/N_wk1995.json.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx/maptbx/bcr/tables/Br_wk1995.json.gz using File::StripNondeterminism::handlers::gzip dh_compress -a -O--buildsystem=pybuild cd debian/libcctbx0 cd debian/python3-cctbx cd debian/libcctbx-dev chmod a-x usr/share/doc/libcctbx0/changelog usr/share/doc/libcctbx0/changelog.Debian usr/share/doc/libcctbx0/changelog.Debian.loong64 gzip -9nf usr/share/doc/libcctbx0/changelog usr/share/doc/libcctbx0/changelog.Debian usr/share/doc/libcctbx0/changelog.Debian.loong64 chmod a-x usr/share/doc/libcctbx-dev/changelog usr/share/doc/libcctbx-dev/changelog.Debian usr/share/doc/libcctbx-dev/changelog.Debian.loong64 chmod a-x usr/share/doc/python3-cctbx/changelog usr/share/doc/python3-cctbx/changelog.Debian usr/share/doc/python3-cctbx/changelog.Debian.loong64 gzip -9nf usr/share/doc/libcctbx-dev/changelog usr/share/doc/libcctbx-dev/changelog.Debian usr/share/doc/libcctbx-dev/changelog.Debian.loong64 cd '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' gzip -9nf usr/share/doc/python3-cctbx/changelog usr/share/doc/python3-cctbx/changelog.Debian usr/share/doc/python3-cctbx/changelog.Debian.loong64 cd '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' cd '/build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1' dh_fixperms -a -O--buildsystem=pybuild find debian/libcctbx0 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libcctbx-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-cctbx ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libcctbx0/usr/share/doc -type f -a -true -a ! -regex 'debian/libcctbx0/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx0/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcctbx0 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx0/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libcctbx-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libcctbx-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcctbx-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcctbx-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python3-cctbx/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-cctbx/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cctbx/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-cctbx/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cctbx -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-cctbx/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-cctbx/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/usr/lib/debug/.dwz/loongarch64-linux-gnu dwz -mdebian/libcctbx0/usr/lib/debug/.dwz/loongarch64-linux-gnu/libcctbx0.debug -M/usr/lib/debug/.dwz/loongarch64-linux-gnu/libcctbx0.debug -- debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libann_adaptor.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libasymmetric_map.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcbf-private.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libccp4io.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcctbx.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libomptbx.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/librstbx.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libspotfinder.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libxcif.so.0.0.1 install -m0755 -d debian/python3-cctbx/usr/lib/debug/.dwz/loongarch64-linux-gnu dwz -mdebian/python3-cctbx/usr/lib/debug/.dwz/loongarch64-linux-gnu/python3-cctbx.debug -M/usr/lib/debug/.dwz/loongarch64-linux-gnu/python3-cctbx.debug -- debian/python3-cctbx/usr/bin/cbflib.tst_memory debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib debian/python3-cctbx/usr/bin/cctbx.find_distances debian/python3-cctbx/usr/bin/cctbx.getting_started debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups debian/python3-cctbx/usr/bin/cctbx_blobs debian/python3-cctbx/usr/lib/cctbx/python3.14/boost_adaptbx/tests/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.14/iotbx/pdb/hybrid_36_fem debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_accessors debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_1 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_2 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_4 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_5 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_rectangular_full_packed debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_ref_matrix_facet debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_sym_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_unsigned_float_arithmetic debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_vec3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/error/tst_error debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/lbfgs/tst_lbfgs debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/math/tests/tst debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_cholesky debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_givens debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_householder debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_svd debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/serialization/tst_base_256 debian/python3-cctbx/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens debian/python3-cctbx/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_reparametrisation debian/python3-cctbx/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_special_position debian/python3-cctbx/usr/lib/cctbx/python3.15/boost_adaptbx/tests/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.15/iotbx/pdb/hybrid_36_fem debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/array_family/tst_accessors debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/array_family/tst_af_1 debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/array_family/tst_af_2 debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/array_family/tst_af_3 debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/array_family/tst_af_4 debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/array_family/tst_af_5 debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/array_family/tst_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/array_family/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/array_family/tst_rectangular_full_packed debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/array_family/tst_ref_matrix_facet debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/array_family/tst_sym_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/array_family/tst_unsigned_float_arithmetic debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/array_family/tst_vec3 debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/error/tst_error debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/lbfgs/tst_lbfgs debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/math/tests/tst debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/matrix/tests/tst_cholesky debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/matrix/tests/tst_givens debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/matrix/tests/tst_householder debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/matrix/tests/tst_svd debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/serialization/tst_base_256 debian/python3-cctbx/usr/lib/cctbx/python3.15/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens debian/python3-cctbx/usr/lib/cctbx/python3.15/smtbx/refinement/constraints/tests/tst_reparametrisation debian/python3-cctbx/usr/lib/cctbx/python3.15/smtbx/refinement/constraints/tests/tst_special_position debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/xcif_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/xcif_ext.cpython-315-loongarch64-linux-gnu.so objcopy --compress-debug-sections debian/libcctbx0/usr/lib/debug/.dwz/loongarch64-linux-gnu/libcctbx0.debug chmod 0644 -- debian/libcctbx0/usr/lib/debug/.dwz/loongarch64-linux-gnu/libcctbx0.debug objcopy --compress-debug-sections debian/python3-cctbx/usr/lib/debug/.dwz/loongarch64-linux-gnu/python3-cctbx.debug chmod 0644 -- debian/python3-cctbx/usr/lib/debug/.dwz/loongarch64-linux-gnu/python3-cctbx.debug dh_strip -a -O--buildsystem=pybuild install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/af objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/af/42174ccb5798507476edbff5e4499105e45cef.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/af/42174ccb5798507476edbff5e4499105e45cef.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/af/42174ccb5798507476edbff5e4499105e45cef.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/85 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/librstbx.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/85/37763931ddeddaf57d5b0e6874a389f2f34ca5.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/85/37763931ddeddaf57d5b0e6874a389f2f34ca5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/librstbx.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/85/37763931ddeddaf57d5b0e6874a389f2f34ca5.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/librstbx.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/d9 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcctbx.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/d9/31d54d99026af07f3436a793f233e1a481c845.debug install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ee objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ee/93c2928f9593e902b8d2d80014ef4e8808ecd8.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ee/93c2928f9593e902b8d2d80014ef4e8808ecd8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ee/93c2928f9593e902b8d2d80014ef4e8808ecd8.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/12 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/12/557e1ae5adc4f6f52445f3f679c1e868f3bc53.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/12/557e1ae5adc4f6f52445f3f679c1e868f3bc53.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/12/557e1ae5adc4f6f52445f3f679c1e868f3bc53.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c4/2d29982f74fa70221d7c6498f4e0d977a55689.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/d9/31d54d99026af07f3436a793f233e1a481c845.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcctbx.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/d9/31d54d99026af07f3436a793f233e1a481c845.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcctbx.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/2c objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/2c/80f5943caf57ca0b9231f37120e9ddce786bad.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c4/2d29982f74fa70221d7c6498f4e0d977a55689.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c4/2d29982f74fa70221d7c6498f4e0d977a55689.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2e/c631b12dc201ab326b3293a0816b4218db2a28.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2e/c631b12dc201ab326b3293a0816b4218db2a28.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2e/c631b12dc201ab326b3293a0816b4218db2a28.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c0 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c0/38681b1bdd68bd85d6523e2900a909232575f0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c0/38681b1bdd68bd85d6523e2900a909232575f0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c0/38681b1bdd68bd85d6523e2900a909232575f0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/23 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/23/ab6cb4e6c67d074bcc73b39cf1f247b84235f0.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/2c/80f5943caf57ca0b9231f37120e9ddce786bad.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/2c/80f5943caf57ca0b9231f37120e9ddce786bad.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so.0.0.1 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/23/ab6cb4e6c67d074bcc73b39cf1f247b84235f0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/d4 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/d4/b91b024a276321d739a09860031663255d5a85.debug objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/23/ab6cb4e6c67d074bcc73b39cf1f247b84235f0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/57 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/57/c0c0b3d65819750928ff7e1d8d5fb0a0ed9b18.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/57/c0c0b3d65819750928ff7e1d8d5fb0a0ed9b18.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/57/c0c0b3d65819750928ff7e1d8d5fb0a0ed9b18.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-315-loongarch64-linux-gnu.so chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/d4/b91b024a276321d739a09860031663255d5a85.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so.0.0.1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/57 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/57/13f4267140772fcb2249a1778d82bdd292a72a.debug objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/d4/b91b024a276321d739a09860031663255d5a85.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/3b objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/3b/9f5013c96962f9e091080c151206092147264b.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/3b/9f5013c96962f9e091080c151206092147264b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/3b/9f5013c96962f9e091080c151206092147264b.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/e6 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcbf-private.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/e6/4f989ce2986d8f2136b9f0e345626c4a5af8e3.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/e6/4f989ce2986d8f2136b9f0e345626c4a5af8e3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcbf-private.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/e6/4f989ce2986d8f2136b9f0e345626c4a5af8e3.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcbf-private.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/1b objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libann_adaptor.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/1b/8ef92d5860e63f40e22c9756002e126c57fa3d.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/1b/8ef92d5860e63f40e22c9756002e126c57fa3d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libann_adaptor.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/1b/8ef92d5860e63f40e22c9756002e126c57fa3d.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libann_adaptor.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/34 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/34/27e5299b098e8e800adeade7a2fb0f38cd7271.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/57/13f4267140772fcb2249a1778d82bdd292a72a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/57/13f4267140772fcb2249a1778d82bdd292a72a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05/0a76cd3a2489010c0d4bf334ee1bb5132a6a6f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05/0a76cd3a2489010c0d4bf334ee1bb5132a6a6f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05/0a76cd3a2489010c0d4bf334ee1bb5132a6a6f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d2 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d2/cb71727b34806120cb1dce1c655b07717e5f7b.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/34/27e5299b098e8e800adeade7a2fb0f38cd7271.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/34/27e5299b098e8e800adeade7a2fb0f38cd7271.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/c4 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libxcif.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/c4/93d5c4c3a0b55feac97626c51da8c24e609d58.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/c4/93d5c4c3a0b55feac97626c51da8c24e609d58.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libxcif.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/c4/93d5c4c3a0b55feac97626c51da8c24e609d58.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libxcif.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/29 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libccp4io.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/29/4f767d1e3de59ff12779e2d533e5c76f2f8972.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/29/4f767d1e3de59ff12779e2d533e5c76f2f8972.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libccp4io.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/29/4f767d1e3de59ff12779e2d533e5c76f2f8972.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libccp4io.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f0 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f0/691ec4a39d6e11441607f5cf75049fa305815a.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f0/691ec4a39d6e11441607f5cf75049fa305815a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/f0/691ec4a39d6e11441607f5cf75049fa305815a.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/cb objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libspotfinder.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/cb/b149d75991b69ae154c838e94c23ab39e46137.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/cb/b149d75991b69ae154c838e94c23ab39e46137.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libspotfinder.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/cb/b149d75991b69ae154c838e94c23ab39e46137.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libspotfinder.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/8d objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libasymmetric_map.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/8d/82cc49f448a454cc83cea9ac0e033b74251db6.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d2/cb71727b34806120cb1dce1c655b07717e5f7b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-314-loongarch64-linux-gnu.so chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/8d/82cc49f448a454cc83cea9ac0e033b74251db6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libasymmetric_map.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d2/cb71727b34806120cb1dce1c655b07717e5f7b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/8d/82cc49f448a454cc83cea9ac0e033b74251db6.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libasymmetric_map.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/c4 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/c4/17cbcc000871ee822918bfa2feb1a2093d8f9c.debug install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/35 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/35/6a778eeec924ec8a0e1e8f4f6703b93c101c76.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/c4/17cbcc000871ee822918bfa2feb1a2093d8f9c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/c4/17cbcc000871ee822918bfa2feb1a2093d8f9c.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/22 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/22/7ea0e3feafa8a96524d67c0cc480340a56400e.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/22/7ea0e3feafa8a96524d67c0cc480340a56400e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/22/7ea0e3feafa8a96524d67c0cc480340a56400e.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/3c objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/3c/c6e59525b8b42997cd75ab6fc76ee9218589f8.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/3c/c6e59525b8b42997cd75ab6fc76ee9218589f8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/35/6a778eeec924ec8a0e1e8f4f6703b93c101c76.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/3c/c6e59525b8b42997cd75ab6fc76ee9218589f8.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/72 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/72/0c3c6eeb7f05f60847c5df0029aa49aa6e783a.debug objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/35/6a778eeec924ec8a0e1e8f4f6703b93c101c76.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-315-loongarch64-linux-gnu.so chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/72/0c3c6eeb7f05f60847c5df0029aa49aa6e783a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/72/0c3c6eeb7f05f60847c5df0029aa49aa6e783a.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so.0.0.1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/84 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/84/e64445acfa1956effbf4f9ce182040ae296134.debug install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/57 objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libomptbx.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/57/7194965500874a1f058b9c654403f70080ed9a.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/57/7194965500874a1f058b9c654403f70080ed9a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libomptbx.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/57/7194965500874a1f058b9c654403f70080ed9a.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libomptbx.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/0a objcopy --only-keep-debug --compress-debug-sections debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so.0.0.1 debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/0a/527cc0727de870d7ce3862c2c03b2e8f7cc02c.debug chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/0a/527cc0727de870d7ce3862c2c03b2e8f7cc02c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so.0.0.1 objcopy --add-gnu-debuglink debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.build-id/0a/527cc0727de870d7ce3862c2c03b2e8f7cc02c.debug debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so.0.0.1 install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libcctbx0/usr/lib/debug/.dwz/loongarch64-linux-gnu debian/.debhelper/libcctbx0/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/libcctbx0/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/libcctbx0/usr/lib/debug install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/usr/share/doc ln -s libcctbx0 debian/.debhelper/libcctbx0/dbgsym-root/usr/share/doc/libcctbx0-dbgsym install -m0755 -d debian/.debhelper/libcctbx0 chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/84/e64445acfa1956effbf4f9ce182040ae296134.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/84/e64445acfa1956effbf4f9ce182040ae296134.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/27 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/27/8a3e884390a23f11a0b10cc816413ba1221aa0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/27/8a3e884390a23f11a0b10cc816413ba1221aa0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/27/8a3e884390a23f11a0b10cc816413ba1221aa0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/xcif_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3d/faaa138fed512b10ba706e43776f43c0beee35.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3d/faaa138fed512b10ba706e43776f43c0beee35.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/xcif_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3d/faaa138fed512b10ba706e43776f43c0beee35.debug debian/python3-cctbx/usr/lib/python3/dist-packages/xcif_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6f/54e53ad754f4319242093dc4ace9d1a04a1d73.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6f/54e53ad754f4319242093dc4ace9d1a04a1d73.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6f/54e53ad754f4319242093dc4ace9d1a04a1d73.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f2 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f2/9c23988dd1fc5358c43b76ffe8120a1e04724c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f2/9c23988dd1fc5358c43b76ffe8120a1e04724c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f2/9c23988dd1fc5358c43b76ffe8120a1e04724c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e8 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e8/84d197b537676fe460cc80d9c15ea3b96419f0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e8/84d197b537676fe460cc80d9c15ea3b96419f0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e8/84d197b537676fe460cc80d9c15ea3b96419f0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/38 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/38/5cfd0a7d5a1e69d3c24d8faba58b0ea927ab3a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/38/5cfd0a7d5a1e69d3c24d8faba58b0ea927ab3a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/38/5cfd0a7d5a1e69d3c24d8faba58b0ea927ab3a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9/5b3b212c16fc1d76a0e9f534c8e3b799780f9b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9/5b3b212c16fc1d76a0e9f534c8e3b799780f9b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9/5b3b212c16fc1d76a0e9f534c8e3b799780f9b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/6592da910f45a67f3063fef9af4dfdeca3ee61.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/6592da910f45a67f3063fef9af4dfdeca3ee61.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/6592da910f45a67f3063fef9af4dfdeca3ee61.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05/948572bf8d9e1cae5e82cb25301d1ae3aee443.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05/948572bf8d9e1cae5e82cb25301d1ae3aee443.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05/948572bf8d9e1cae5e82cb25301d1ae3aee443.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1a/a049d4574cc89db0900c5c9448aa914f5ed986.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1a/a049d4574cc89db0900c5c9448aa914f5ed986.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1a/a049d4574cc89db0900c5c9448aa914f5ed986.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/39 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/39/909af46de41486eb4ce9e962f10f831b2eddaf.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/39/909af46de41486eb4ce9e962f10f831b2eddaf.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/39/909af46de41486eb4ce9e962f10f831b2eddaf.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/28 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/28/da74c3a6b0150175f7e7c42ceb4d34503ba804.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/28/da74c3a6b0150175f7e7c42ceb4d34503ba804.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/28/da74c3a6b0150175f7e7c42ceb4d34503ba804.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b2 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b2/82e062c36e08fcdac05acc7301062de84fd479.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b2/82e062c36e08fcdac05acc7301062de84fd479.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b2/82e062c36e08fcdac05acc7301062de84fd479.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/51 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/51/6610f5188d605f0a5cec5ba7de30985b34cc63.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/51/6610f5188d605f0a5cec5ba7de30985b34cc63.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/51/6610f5188d605f0a5cec5ba7de30985b34cc63.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c6/9004c237420c1600d58196bb9fb229007a40f2.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c6/9004c237420c1600d58196bb9fb229007a40f2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c6/9004c237420c1600d58196bb9fb229007a40f2.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/38 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/38/d5a6279eefe9805b24c0756af3b17c9b46cb67.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/38/d5a6279eefe9805b24c0756af3b17c9b46cb67.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/38/d5a6279eefe9805b24c0756af3b17c9b46cb67.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/20 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/20/0200dd9f3d5cee1bc658746dfdab99fc31b4ac.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/20/0200dd9f3d5cee1bc658746dfdab99fc31b4ac.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/20/0200dd9f3d5cee1bc658746dfdab99fc31b4ac.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/14 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/14/b30ab96bb3fcbc7beb9d11969ab5115d37ade2.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/14/b30ab96bb3fcbc7beb9d11969ab5115d37ade2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/14/b30ab96bb3fcbc7beb9d11969ab5115d37ade2.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a2 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a2/2e1416c6596eaa3596a5fd73c012461551f69c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a2/2e1416c6596eaa3596a5fd73c012461551f69c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a2/2e1416c6596eaa3596a5fd73c012461551f69c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d8 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d8/598c391edf89aa384948e9008dc5155c5038ef.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d8/598c391edf89aa384948e9008dc5155c5038ef.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d8/598c391edf89aa384948e9008dc5155c5038ef.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/xcif_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4b/db79158c43c40d31c1876ef6733ae3bbb96796.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4b/db79158c43c40d31c1876ef6733ae3bbb96796.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/xcif_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/4b/db79158c43c40d31c1876ef6733ae3bbb96796.debug debian/python3-cctbx/usr/lib/python3/dist-packages/xcif_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/91 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/91/f5ab30cb45c4d26d3da5b3eb71231984ce5f1e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/91/f5ab30cb45c4d26d3da5b3eb71231984ce5f1e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/91/f5ab30cb45c4d26d3da5b3eb71231984ce5f1e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44/05fa86afbaba979677cb16f845152bbffc0848.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44/05fa86afbaba979677cb16f845152bbffc0848.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/44/05fa86afbaba979677cb16f845152bbffc0848.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/15 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/15/39b89b41dfa5a2e5c59c89678c8fe2e587b630.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/15/39b89b41dfa5a2e5c59c89678c8fe2e587b630.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/15/39b89b41dfa5a2e5c59c89678c8fe2e587b630.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/77 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/77/e7253a1675c3b2e37fad9df570fd9f04977926.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/77/e7253a1675c3b2e37fad9df570fd9f04977926.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/77/e7253a1675c3b2e37fad9df570fd9f04977926.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ab objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ab/3bbbc49fbc99a5edba1be77a54d72d00588c78.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ab/3bbbc49fbc99a5edba1be77a54d72d00588c78.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ab/3bbbc49fbc99a5edba1be77a54d72d00588c78.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5c/966b301594047a17ce8fe2a2941a50f3fa0127.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5c/966b301594047a17ce8fe2a2941a50f3fa0127.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5c/966b301594047a17ce8fe2a2941a50f3fa0127.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/be objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/be/bf6d75d706ee386763db65cc4855f00cf06480.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/be/bf6d75d706ee386763db65cc4855f00cf06480.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/be/bf6d75d706ee386763db65cc4855f00cf06480.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/46 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/46/e643d2ddac483670465cda58664c8f0f68cda7.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/46/e643d2ddac483670465cda58664c8f0f68cda7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/46/e643d2ddac483670465cda58664c8f0f68cda7.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b/ec826ffe0fc6211b7afa182a31444da99669cd.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b/ec826ffe0fc6211b7afa182a31444da99669cd.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b/ec826ffe0fc6211b7afa182a31444da99669cd.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/5d2a925251a3cb1b9bd0355d929a62020dcafe.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/5d2a925251a3cb1b9bd0355d929a62020dcafe.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/5d2a925251a3cb1b9bd0355d929a62020dcafe.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/21 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/21/2066d3c74a8bfaf65cb3cc39ba13e94691e20e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/21/2066d3c74a8bfaf65cb3cc39ba13e94691e20e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/21/2066d3c74a8bfaf65cb3cc39ba13e94691e20e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/77ddd5e9e1846051d70bdb5c167207e68eacf2.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/77ddd5e9e1846051d70bdb5c167207e68eacf2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/77ddd5e9e1846051d70bdb5c167207e68eacf2.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b/0502af7e4fe2d205e9abbae85b126f4ea1ed3c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b/0502af7e4fe2d205e9abbae85b126f4ea1ed3c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b/0502af7e4fe2d205e9abbae85b126f4ea1ed3c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/65 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/65/e9dee565b4977d0039bc2b3b8fc2248dce1abe.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/65/e9dee565b4977d0039bc2b3b8fc2248dce1abe.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/65/e9dee565b4977d0039bc2b3b8fc2248dce1abe.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bb objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bb/d5e4520d1304322b7a298cb08c88b4e9a1f2ac.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bb/d5e4520d1304322b7a298cb08c88b4e9a1f2ac.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bb/d5e4520d1304322b7a298cb08c88b4e9a1f2ac.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2d/180bc12a494396fa900bcc97446ea6f20840e9.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2d/180bc12a494396fa900bcc97446ea6f20840e9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2d/180bc12a494396fa900bcc97446ea6f20840e9.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a/56fa029be312e2ade05ee5a9c775ce322e93de.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a/56fa029be312e2ade05ee5a9c775ce322e93de.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9a/56fa029be312e2ade05ee5a9c775ce322e93de.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/63 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/63/9e8dd5060f9fc4f030db1cdfde4a0a45b8bf4e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/63/9e8dd5060f9fc4f030db1cdfde4a0a45b8bf4e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/63/9e8dd5060f9fc4f030db1cdfde4a0a45b8bf4e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b0 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b0/af007c9441c28b608a89761eae7f182aeb7cac.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b0/af007c9441c28b608a89761eae7f182aeb7cac.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b0/af007c9441c28b608a89761eae7f182aeb7cac.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9c/61f6418d64f6519dbea23369cd406f4da4722e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9c/61f6418d64f6519dbea23369cd406f4da4722e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9c/61f6418d64f6519dbea23369cd406f4da4722e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/09 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/09/fc1a25a6fd79efb12db7cc02fec87cdbaff1ef.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/09/fc1a25a6fd79efb12db7cc02fec87cdbaff1ef.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/09/fc1a25a6fd79efb12db7cc02fec87cdbaff1ef.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/06 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/06/2e7afea2fb6013a929e7a792f2990e03621d70.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/06/2e7afea2fb6013a929e7a792f2990e03621d70.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/06/2e7afea2fb6013a929e7a792f2990e03621d70.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b3 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b3/55b16c72770ac7431483381796e4a3d65b6b91.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b3/55b16c72770ac7431483381796e4a3d65b6b91.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b3/55b16c72770ac7431483381796e4a3d65b6b91.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/28abe197d06f7ad26a3b5ec22fc19fecc40d1f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/28abe197d06f7ad26a3b5ec22fc19fecc40d1f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b7/28abe197d06f7ad26a3b5ec22fc19fecc40d1f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33/58a5ca3a7e6656a8393eb859a2b2d40e7a5660.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33/58a5ca3a7e6656a8393eb859a2b2d40e7a5660.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33/58a5ca3a7e6656a8393eb859a2b2d40e7a5660.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05/0c0882563a73bbd0701dd3e95bc1e9a6981d4f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05/0c0882563a73bbd0701dd3e95bc1e9a6981d4f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/05/0c0882563a73bbd0701dd3e95bc1e9a6981d4f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/13 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/13/8f201cd033d39deb194d594a2d9b774ae67518.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/13/8f201cd033d39deb194d594a2d9b774ae67518.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/13/8f201cd033d39deb194d594a2d9b774ae67518.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/97 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/97/96c55ebb242978300dc4fcf080cd17bc7860ba.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/97/96c55ebb242978300dc4fcf080cd17bc7860ba.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/97/96c55ebb242978300dc4fcf080cd17bc7860ba.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c/a37b2f18c4de363b7df675ef5657399548218a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c/a37b2f18c4de363b7df675ef5657399548218a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2c/a37b2f18c4de363b7df675ef5657399548218a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/74 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/74/0ae689feb5e1e337a1c1eeab10513e66e37539.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/74/0ae689feb5e1e337a1c1eeab10513e66e37539.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/74/0ae689feb5e1e337a1c1eeab10513e66e37539.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/68 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/68/d573bf25ed9a7f87004687b8ff8d53771861be.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/68/d573bf25ed9a7f87004687b8ff8d53771861be.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/68/d573bf25ed9a7f87004687b8ff8d53771861be.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0a/5deff3e136aea8f486403631171f90213fcff3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0a/5deff3e136aea8f486403631171f90213fcff3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0a/5deff3e136aea8f486403631171f90213fcff3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c8 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c8/6a9f9abbff334c3dbe52ada0796f2c9a37645a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c8/6a9f9abbff334c3dbe52ada0796f2c9a37645a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c8/6a9f9abbff334c3dbe52ada0796f2c9a37645a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cf objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cf/1969c8cea787c5a94f62119e1bd95463872e8f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cf/1969c8cea787c5a94f62119e1bd95463872e8f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cf/1969c8cea787c5a94f62119e1bd95463872e8f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11/ec93c70e1c6c5d4f65d358f68c553ff608b98f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11/ec93c70e1c6c5d4f65d358f68c553ff608b98f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11/ec93c70e1c6c5d4f65d358f68c553ff608b98f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33/55fb9ded5789b9db3e6185103fc3ad0fb14577.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33/55fb9ded5789b9db3e6185103fc3ad0fb14577.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/33/55fb9ded5789b9db3e6185103fc3ad0fb14577.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/1c0f48a0ec10077d128086cf56bceb9b06b296.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/1c0f48a0ec10077d128086cf56bceb9b06b296.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/1c0f48a0ec10077d128086cf56bceb9b06b296.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/ff795aacff28a063a3dbf15c054103da645004.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/ff795aacff28a063a3dbf15c054103da645004.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/ff795aacff28a063a3dbf15c054103da645004.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e6/89de603a5ce5cd2063ff49b40cd910a5edf98a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e6/89de603a5ce5cd2063ff49b40cd910a5edf98a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e6/89de603a5ce5cd2063ff49b40cd910a5edf98a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fc objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fc/1058d3574315591d24c87972a14c14a4ad4916.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fc/1058d3574315591d24c87972a14c14a4ad4916.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/fc/1058d3574315591d24c87972a14c14a4ad4916.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f1/fe27764810a498dabd5210a4e52387364752e8.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f1/fe27764810a498dabd5210a4e52387364752e8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f1/fe27764810a498dabd5210a4e52387364752e8.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/04 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/04/38b0b942f8cb331ed4c7f30b4aa287f5001167.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/04/38b0b942f8cb331ed4c7f30b4aa287f5001167.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/04/38b0b942f8cb331ed4c7f30b4aa287f5001167.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a8 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a8/f405546d8515e5a5c280ecbe7450cf2270697b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a8/f405546d8515e5a5c280ecbe7450cf2270697b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a8/f405546d8515e5a5c280ecbe7450cf2270697b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7/141578e974674cd8d12b3fd012e8fc07984f97.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7/141578e974674cd8d12b3fd012e8fc07984f97.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7/141578e974674cd8d12b3fd012e8fc07984f97.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/87 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/87/67ab70c43248c24d46113d4b2cf398eb549d81.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/87/67ab70c43248c24d46113d4b2cf398eb549d81.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/87/67ab70c43248c24d46113d4b2cf398eb549d81.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ce objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ce/4f9de66f3c12c91474290a32088795dd3b3ce0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ce/4f9de66f3c12c91474290a32088795dd3b3ce0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ce/4f9de66f3c12c91474290a32088795dd3b3ce0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/fc1c58abad9211dba1713243267b06034bb1db.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/fc1c58abad9211dba1713243267b06034bb1db.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/fc1c58abad9211dba1713243267b06034bb1db.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/39 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/39/6fc02f3a6e435a3079b69103ab9e3728aab4df.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/39/6fc02f3a6e435a3079b69103ab9e3728aab4df.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/39/6fc02f3a6e435a3079b69103ab9e3728aab4df.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea/eb27eda5905f67e25c67f5291fc1030f0a227e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea/eb27eda5905f67e25c67f5291fc1030f0a227e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea/eb27eda5905f67e25c67f5291fc1030f0a227e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e1/e72b32007db80da191a6e8fefeb567da33dc61.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e1/e72b32007db80da191a6e8fefeb567da33dc61.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e1/e72b32007db80da191a6e8fefeb567da33dc61.debug debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3e/87905d81a5e53e40c1b37a849a8563250bec5e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3e/87905d81a5e53e40c1b37a849a8563250bec5e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3e/87905d81a5e53e40c1b37a849a8563250bec5e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/af objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/af/518470e4268618e5363e157b46a45d939359d1.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/af/518470e4268618e5363e157b46a45d939359d1.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/af/518470e4268618e5363e157b46a45d939359d1.debug debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e4/6ffc8c1097cf2b4d629270b07fa5c588cd858a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e4/6ffc8c1097cf2b4d629270b07fa5c588cd858a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e4/6ffc8c1097cf2b4d629270b07fa5c588cd858a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ac objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ac/eefbb00f4a9300a7eb22516a4d40621c60c9c7.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ac/eefbb00f4a9300a7eb22516a4d40621c60c9c7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ac/eefbb00f4a9300a7eb22516a4d40621c60c9c7.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/25 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/25/99b5adf4c30bc0ba81b0000bb6bb9c0bf36931.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/25/99b5adf4c30bc0ba81b0000bb6bb9c0bf36931.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/25/99b5adf4c30bc0ba81b0000bb6bb9c0bf36931.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4/095789bddeef466cf37bec33beaf5beb095381.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4/095789bddeef466cf37bec33beaf5beb095381.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4/095789bddeef466cf37bec33beaf5beb095381.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/6e5fe9e3fb929a159042def5df22bff0e5171a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/6e5fe9e3fb929a159042def5df22bff0e5171a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a1/6e5fe9e3fb929a159042def5df22bff0e5171a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/29 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/29/6c319c4a9cd6f0f589a414baa445fb6d058b7c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/29/6c319c4a9cd6f0f589a414baa445fb6d058b7c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/29/6c319c4a9cd6f0f589a414baa445fb6d058b7c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/14 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/14/b86bc8f30f3159276195e3bcad01c112e414a2.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/14/b86bc8f30f3159276195e3bcad01c112e414a2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/14/b86bc8f30f3159276195e3bcad01c112e414a2.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5f/8151b3cf1334fadaa7cbbd51af3dda3b8d1c4d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5f/8151b3cf1334fadaa7cbbd51af3dda3b8d1c4d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5f/8151b3cf1334fadaa7cbbd51af3dda3b8d1c4d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b/d124c4786aecdfe4681d1616d97579994dd2cd.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b/d124c4786aecdfe4681d1616d97579994dd2cd.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b/d124c4786aecdfe4681d1616d97579994dd2cd.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f6/4b4a4998389a5510e795bff8ad87228e4d55a2.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f6/4b4a4998389a5510e795bff8ad87228e4d55a2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f6/4b4a4998389a5510e795bff8ad87228e4d55a2.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f3 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f3/416130c2971842d7a4f1922bfa30dee586074a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f3/416130c2971842d7a4f1922bfa30dee586074a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f3/416130c2971842d7a4f1922bfa30dee586074a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/95 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/95/cb8af4379a9547614b14c83e3f013b5e7de024.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/95/cb8af4379a9547614b14c83e3f013b5e7de024.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/95/cb8af4379a9547614b14c83e3f013b5e7de024.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/dc objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/dc/bc9cf192730d8b6348626ca25da1d9d6d03d8c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/dc/bc9cf192730d8b6348626ca25da1d9d6d03d8c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/dc/bc9cf192730d8b6348626ca25da1d9d6d03d8c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b/960a3f6ea2aff4de0742282e1f8e0688e075a2.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b/960a3f6ea2aff4de0742282e1f8e0688e075a2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6b/960a3f6ea2aff4de0742282e1f8e0688e075a2.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0e/9e1f1cfcb976e5904bd413cfa926807558bd28.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0e/9e1f1cfcb976e5904bd413cfa926807558bd28.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0e/9e1f1cfcb976e5904bd413cfa926807558bd28.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/28 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/28/18e1e92b0bbdb5ac919401cec49075b29d9943.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/28/18e1e92b0bbdb5ac919401cec49075b29d9943.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/28/18e1e92b0bbdb5ac919401cec49075b29d9943.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b/1727a9f05992a31643f05ab5f106dbc7d95096.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b/1727a9f05992a31643f05ab5f106dbc7d95096.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1b/1727a9f05992a31643f05ab5f106dbc7d95096.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ca objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ca/d59dd94d2647ff97ba8e163a1b1f126dc4dbf5.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ca/d59dd94d2647ff97ba8e163a1b1f126dc4dbf5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ca/d59dd94d2647ff97ba8e163a1b1f126dc4dbf5.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a/56d4f8be23d0915d63d8dc4c7cda07b8729a09.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a/56d4f8be23d0915d63d8dc4c7cda07b8729a09.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3a/56d4f8be23d0915d63d8dc4c7cda07b8729a09.debug debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/98 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/98/757deab6423863557e51afcabef0217b3c7b05.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/98/757deab6423863557e51afcabef0217b3c7b05.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/98/757deab6423863557e51afcabef0217b3c7b05.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ad objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ad/044eace33b1690dea6b796b8d0580be3f7085e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ad/044eace33b1690dea6b796b8d0580be3f7085e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ad/044eace33b1690dea6b796b8d0580be3f7085e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/82 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/82/468ef9ba1852096f49e940ae0c95b0e718594e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/82/468ef9ba1852096f49e940ae0c95b0e718594e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/82/468ef9ba1852096f49e940ae0c95b0e718594e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/10 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/10/d9187f7b1659fb6e1feee92ffdbc893f88919e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/10/d9187f7b1659fb6e1feee92ffdbc893f88919e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/10/d9187f7b1659fb6e1feee92ffdbc893f88919e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c5 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c5/ccb7dd992f1d66affe1c14392487c5ce1d667f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c5/ccb7dd992f1d66affe1c14392487c5ce1d667f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c5/ccb7dd992f1d66affe1c14392487c5ce1d667f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/89 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/89/632aa1c6b4ea3685e5174fb8ca77bd0ffebaa2.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/89/632aa1c6b4ea3685e5174fb8ca77bd0ffebaa2.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/89/632aa1c6b4ea3685e5174fb8ca77bd0ffebaa2.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/00 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/00/a66a0697f7897f2533ae8c0f8d3d129d7eb134.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/00/a66a0697f7897f2533ae8c0f8d3d129d7eb134.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/00/a66a0697f7897f2533ae8c0f8d3d129d7eb134.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/56 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/56/8704544db713d689d78ec0832e3e5b58ca24fe.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/56/8704544db713d689d78ec0832e3e5b58ca24fe.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/56/8704544db713d689d78ec0832e3e5b58ca24fe.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/38 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/38/7f88133c5357c785b6305f1f55aee02c364fdc.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/38/7f88133c5357c785b6305f1f55aee02c364fdc.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/38/7f88133c5357c785b6305f1f55aee02c364fdc.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/1da32586352d5e3a6e86754f8e606944783a71.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/1da32586352d5e3a6e86754f8e606944783a71.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6d/1da32586352d5e3a6e86754f8e606944783a71.debug debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ab objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ab/8b9251138ea0ee87c2803886d6474993cef9fb.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ab/8b9251138ea0ee87c2803886d6474993cef9fb.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ab/8b9251138ea0ee87c2803886d6474993cef9fb.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/22 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/22/a4819eac8b93844d7ddc7ac23fa2e3a2c79bd3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/22/a4819eac8b93844d7ddc7ac23fa2e3a2c79bd3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/22/a4819eac8b93844d7ddc7ac23fa2e3a2c79bd3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a6/7bec6a4ec79017d9f1f4d357955be5723b2a7d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a6/7bec6a4ec79017d9f1f4d357955be5723b2a7d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a6/7bec6a4ec79017d9f1f4d357955be5723b2a7d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/32 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/32/8eb9f2f61ba1ce0c3e0d0d68177158f1fd35ce.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/32/8eb9f2f61ba1ce0c3e0d0d68177158f1fd35ce.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/32/8eb9f2f61ba1ce0c3e0d0d68177158f1fd35ce.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c3 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c3/a9fe17d20bce2469b605b587243f43398127f7.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c3/a9fe17d20bce2469b605b587243f43398127f7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c3/a9fe17d20bce2469b605b587243f43398127f7.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f/6080349f4685743bc4597b3759a58991332a89.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f/6080349f4685743bc4597b3759a58991332a89.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9f/6080349f4685743bc4597b3759a58991332a89.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7e/f8b936e83b34a764af80a89ef1679479d4e92e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7e/f8b936e83b34a764af80a89ef1679479d4e92e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7e/f8b936e83b34a764af80a89ef1679479d4e92e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/aa objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/aa/40a7deb051ad7d57a009024b1c81fc7f9241a7.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/aa/40a7deb051ad7d57a009024b1c81fc7f9241a7.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/aa/40a7deb051ad7d57a009024b1c81fc7f9241a7.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5e/3a0e652055f8d723288152851ef8732cb8d98b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5e/3a0e652055f8d723288152851ef8732cb8d98b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5e/3a0e652055f8d723288152851ef8732cb8d98b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2e/c9c1adeba32fafdd663fe995b88b3ead72ec4a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2e/c9c1adeba32fafdd663fe995b88b3ead72ec4a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2e/c9c1adeba32fafdd663fe995b88b3ead72ec4a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9/05af8dcead77516d9ecea69b4259099817d2d0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9/05af8dcead77516d9ecea69b4259099817d2d0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9/05af8dcead77516d9ecea69b4259099817d2d0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4/dad03f00ca0133c57c67bb19f6df4b7831db0f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4/dad03f00ca0133c57c67bb19f6df4b7831db0f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4/dad03f00ca0133c57c67bb19f6df4b7831db0f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f2 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f2/1de1add8d899dec574ec546831bfb4000f10b8.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f2/1de1add8d899dec574ec546831bfb4000f10b8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f2/1de1add8d899dec574ec546831bfb4000f10b8.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/14 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/14/152c95fb9b8781e1026fad06637c14ec583e66.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/14/152c95fb9b8781e1026fad06637c14ec583e66.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/14/152c95fb9b8781e1026fad06637c14ec583e66.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a2 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a2/37b4196028efd9b23b29784106d90ae43eef9d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a2/37b4196028efd9b23b29784106d90ae43eef9d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a2/37b4196028efd9b23b29784106d90ae43eef9d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ce objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ce/53fba0a5da4f5f970141e9ddf684917140efe0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ce/53fba0a5da4f5f970141e9ddf684917140efe0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ce/53fba0a5da4f5f970141e9ddf684917140efe0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/10 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/10/ac59281b42ddad8f9cf48a8ea6cbb80a6f04fd.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/10/ac59281b42ddad8f9cf48a8ea6cbb80a6f04fd.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/10/ac59281b42ddad8f9cf48a8ea6cbb80a6f04fd.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/fc354385b756767ff0437167522a4bba872783.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/fc354385b756767ff0437167522a4bba872783.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5a/fc354385b756767ff0437167522a4bba872783.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c3 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c3/28d02a1c793443fa06bdfd65080598d849f6eb.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c3/28d02a1c793443fa06bdfd65080598d849f6eb.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c3/28d02a1c793443fa06bdfd65080598d849f6eb.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/62 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/62/7c82e3b7714169ce95148efe6e6874056a3238.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/62/7c82e3b7714169ce95148efe6e6874056a3238.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/62/7c82e3b7714169ce95148efe6e6874056a3238.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bc objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bc/c99266551032df70af582833824602486b8fd4.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bc/c99266551032df70af582833824602486b8fd4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/bc/c99266551032df70af582833824602486b8fd4.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/c31d9b88f2b5440e2c20e60ac657f1609ab899.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/c31d9b88f2b5440e2c20e60ac657f1609ab899.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/db/c31d9b88f2b5440e2c20e60ac657f1609ab899.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b/17ec3daaef518c1e4a4de5c1cb76ec734d9a12.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b/17ec3daaef518c1e4a4de5c1cb76ec734d9a12.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b/17ec3daaef518c1e4a4de5c1cb76ec734d9a12.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea/2066b5eaf275f604c78725509c96f1cd15b318.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea/2066b5eaf275f604c78725509c96f1cd15b318.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ea/2066b5eaf275f604c78725509c96f1cd15b318.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/7e2c56e58ed414d0b2aacae85e5a3aa90ad68f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/7e2c56e58ed414d0b2aacae85e5a3aa90ad68f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1f/7e2c56e58ed414d0b2aacae85e5a3aa90ad68f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-315-loongarch64-linux-gnu.so 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ec/5ad799c1b21a1d62f6fed5bdec454c8d2b13de.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ec/5ad799c1b21a1d62f6fed5bdec454c8d2b13de.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ec/5ad799c1b21a1d62f6fed5bdec454c8d2b13de.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-315-loongarch64-linux-gnu.so 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5c/686c216e061a16e5ee69316454381d58887308.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5c/686c216e061a16e5ee69316454381d58887308.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5c/686c216e061a16e5ee69316454381d58887308.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/37 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/37/3760ba8545e14390f9fc006caa3167355566f0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/37/3760ba8545e14390f9fc006caa3167355566f0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/37/3760ba8545e14390f9fc006caa3167355566f0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e5 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e5/2dffed564a0f61765f432e5fbc6321f1dd2565.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e5/2dffed564a0f61765f432e5fbc6321f1dd2565.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e5/2dffed564a0f61765f432e5fbc6321f1dd2565.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9/2f9c2da924bd3627e8e1771b42f49f56faa5ca.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9/2f9c2da924bd3627e8e1771b42f49f56faa5ca.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9/2f9c2da924bd3627e8e1771b42f49f56faa5ca.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5f/422ec6f1f733550467e83264c53379888140ab.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5f/422ec6f1f733550467e83264c53379888140ab.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5f/422ec6f1f733550467e83264c53379888140ab.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4/76032c0c45abc195fa8f6ec238fffabc05f9a4.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4/76032c0c45abc195fa8f6ec238fffabc05f9a4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d4/76032c0c45abc195fa8f6ec238fffabc05f9a4.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/a16b75a728e57f9c6ff304e553946f66960d60.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/a16b75a728e57f9c6ff304e553946f66960d60.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/a16b75a728e57f9c6ff304e553946f66960d60.debug debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f7/076393b2a8fccc07bb1dfa89269a4b6e1149bf.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f7/076393b2a8fccc07bb1dfa89269a4b6e1149bf.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f7/076393b2a8fccc07bb1dfa89269a4b6e1149bf.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0f objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0f/f195d456bd2cbe484b519b89da761947a0ae26.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0f/f195d456bd2cbe484b519b89da761947a0ae26.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0f/f195d456bd2cbe484b519b89da761947a0ae26.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/03 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/03/69e5241a3210a93432527772fe64af0a1ce641.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/03/69e5241a3210a93432527772fe64af0a1ce641.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/03/69e5241a3210a93432527772fe64af0a1ce641.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/df objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-315-loongarch64-linux-gnu.so 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ef/94aa33d2ebd67890c66fd98975cb5198a6382c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ef/94aa33d2ebd67890c66fd98975cb5198a6382c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ef/94aa33d2ebd67890c66fd98975cb5198a6382c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/52 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-314-loongarch64-linux-gnu.so 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d/bed8a73112be73ba7706e98dab81d647450e3e.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d/bed8a73112be73ba7706e98dab81d647450e3e.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/1d/bed8a73112be73ba7706e98dab81d647450e3e.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/da objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-315-loongarch64-linux-gnu.so 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b6/be6e8ff9a36202c7b10cd882cedfe2441390d3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b6/be6e8ff9a36202c7b10cd882cedfe2441390d3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b6/be6e8ff9a36202c7b10cd882cedfe2441390d3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/2e objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-314-loongarch64-linux-gnu.so 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/94/e05602658de32a15ff2a8ace7aedefcc0a7b8a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/94/e05602658de32a15ff2a8ace7aedefcc0a7b8a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/94/e05602658de32a15ff2a8ace7aedefcc0a7b8a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/91 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-315-loongarch64-linux-gnu.so 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/53/5f918897a5309381334ca49e1c41a2139c9eee.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/53/5f918897a5309381334ca49e1c41a2139c9eee.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/53/5f918897a5309381334ca49e1c41a2139c9eee.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b/e26fa5bc2f18e4e1fd582ffa76e7f050907045.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b/e26fa5bc2f18e4e1fd582ffa76e7f050907045.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7b/e26fa5bc2f18e4e1fd582ffa76e7f050907045.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/3e7f57d164e2e6d84ce2df9c8621cb4f235ef3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/3e7f57d164e2e6d84ce2df9c8621cb4f235ef3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/8c/3e7f57d164e2e6d84ce2df9c8621cb4f235ef3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/06 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/06/c979bf55df57fae986b90ef90dc3782b35cc21.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/06/c979bf55df57fae986b90ef90dc3782b35cc21.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/06/c979bf55df57fae986b90ef90dc3782b35cc21.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7/d0e51254374fa5e351c70e179d2ee5480b3ff6.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7/d0e51254374fa5e351c70e179d2ee5480b3ff6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a7/d0e51254374fa5e351c70e179d2ee5480b3ff6.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/23 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/23/726bb7201fbf109c3a32f9d716ef97c47c794a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/23/726bb7201fbf109c3a32f9d716ef97c47c794a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/23/726bb7201fbf109c3a32f9d716ef97c47c794a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a/71fa3e4ee4d0f718352df6dc189557d51b8280.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a/71fa3e4ee4d0f718352df6dc189557d51b8280.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/7a/71fa3e4ee4d0f718352df6dc189557d51b8280.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cc objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cc/6cd7b8a715884bdd648aa0e07adad4ece17e04.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cc/6cd7b8a715884bdd648aa0e07adad4ece17e04.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/cc/6cd7b8a715884bdd648aa0e07adad4ece17e04.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/72 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/72/b0eb8b5c3daaef846c40b3c7a1c0483ce02b79.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/72/b0eb8b5c3daaef846c40b3c7a1c0483ce02b79.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/72/b0eb8b5c3daaef846c40b3c7a1c0483ce02b79.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e9/a76496e06c9f9886b933d53a03782f0f8544d8.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e9/a76496e06c9f9886b933d53a03782f0f8544d8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e9/a76496e06c9f9886b933d53a03782f0f8544d8.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/21 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/21/d30a1a6db28af116d6fda9d4f336d548bc0ee3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/21/d30a1a6db28af116d6fda9d4f336d548bc0ee3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/21/d30a1a6db28af116d6fda9d4f336d548bc0ee3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6c/07ef325218453d40b3e1334b85d8bff407a9a8.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6c/07ef325218453d40b3e1334b85d8bff407a9a8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/6c/07ef325218453d40b3e1334b85d8bff407a9a8.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9/29e2d6caf692935e04d4de8e21d6550ef04fac.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9/29e2d6caf692935e04d4de8e21d6550ef04fac.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9/29e2d6caf692935e04d4de8e21d6550ef04fac.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/41 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/41/741eb464459beb225dfa9b232bf0e8ccf7aa54.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/41/741eb464459beb225dfa9b232bf0e8ccf7aa54.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/41/741eb464459beb225dfa9b232bf0e8ccf7aa54.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b6/27df726e723ba6d5409647fb9706d29dc72781.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b6/27df726e723ba6d5409647fb9706d29dc72781.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/b6/27df726e723ba6d5409647fb9706d29dc72781.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/84 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/84/911277c704dc75e70d9b0c1cc6b5050be0cbf4.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/84/911277c704dc75e70d9b0c1cc6b5050be0cbf4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/84/911277c704dc75e70d9b0c1cc6b5050be0cbf4.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/56 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/56/5b3efcc01a5a28e830e8c02db9fbde37491778.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/56/5b3efcc01a5a28e830e8c02db9fbde37491778.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/56/5b3efcc01a5a28e830e8c02db9fbde37491778.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-315-loongarch64-linux-gnu.so 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5c/1953f29a3ab04db67c69e7605ca5aba176935f.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5c/1953f29a3ab04db67c69e7605ca5aba176935f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5c/1953f29a3ab04db67c69e7605ca5aba176935f.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/18 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-315-loongarch64-linux-gnu.so 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e/e9b3c287585618bdb54e2d54a1da5e7d6c304d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e/e9b3c287585618bdb54e2d54a1da5e7d6c304d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/9e/e9b3c287585618bdb54e2d54a1da5e7d6c304d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-314-loongarch64-linux-gnu.so 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/681170d778202d9215f3bb900e2d63fc5ccf8d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/681170d778202d9215f3bb900e2d63fc5ccf8d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/58/681170d778202d9215f3bb900e2d63fc5ccf8d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e7 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e7/8675955f4d53dab240db673f11518f599b470d.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e7/8675955f4d53dab240db673f11518f599b470d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e7/8675955f4d53dab240db673f11518f599b470d.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/30 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-314-loongarch64-linux-gnu.so 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9/a07f98bcdea7783b34ee24f1ea32ac40bec6ee.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9/a07f98bcdea7783b34ee24f1ea32ac40bec6ee.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d9/a07f98bcdea7783b34ee24f1ea32ac40bec6ee.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/af objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-314-loongarch64-linux-gnu.so 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11/2bd58989ad0d9e7f5ea45f7d2429ed714ec8d8.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11/2bd58989ad0d9e7f5ea45f7d2429ed714ec8d8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/11/2bd58989ad0d9e7f5ea45f7d2429ed714ec8d8.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e8 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e8/0f82ae5651c3ae0b2d51d257918f4fc830e34c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e8/0f82ae5651c3ae0b2d51d257918f4fc830e34c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e8/0f82ae5651c3ae0b2d51d257918f4fc830e34c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c3 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-315-loongarch64-linux-gnu.so 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e3/002fff6c6ddf1e75112c5e798fdb6457823394.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e3/002fff6c6ddf1e75112c5e798fdb6457823394.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/e3/002fff6c6ddf1e75112c5e798fdb6457823394.debug debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/85 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-314-loongarch64-linux-gnu.so 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/20/2d666afc3e9fdb43de1b06f898bdfb363e943a.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/20/2d666afc3e9fdb43de1b06f898bdfb363e943a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/20/2d666afc3e9fdb43de1b06f898bdfb363e943a.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/53 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/53/1d4055546240146747bf54b659bb7588f15671.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/53/1d4055546240146747bf54b659bb7588f15671.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/53/1d4055546240146747bf54b659bb7588f15671.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/de objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/de/fd608b65a50c1d9d44d521466ae55920a3c322.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/de/fd608b65a50c1d9d44d521466ae55920a3c322.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/de/fd608b65a50c1d9d44d521466ae55920a3c322.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66/b1e532a14abc648327bb38407f5c4f41ee8271.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66/b1e532a14abc648327bb38407f5c4f41ee8271.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/66/b1e532a14abc648327bb38407f5c4f41ee8271.debug debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/19 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/19/537640e9ddad1c91d33ec265038f06cd77fab3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/19/537640e9ddad1c91d33ec265038f06cd77fab3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/19/537640e9ddad1c91d33ec265038f06cd77fab3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5c objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5c/58cbb1240f96525a6d38a4a112f1735ec922b3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5c/58cbb1240f96525a6d38a4a112f1735ec922b3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/5c/58cbb1240f96525a6d38a4a112f1735ec922b3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f6 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f6/d7a16b5ac8e36a215dd306ec71c7becdd25f8b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f6/d7a16b5ac8e36a215dd306ec71c7becdd25f8b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/f6/d7a16b5ac8e36a215dd306ec71c7becdd25f8b.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ac objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ac/e4967590b578764fef50663f8dd14af3c627a0.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ac/e4967590b578764fef50663f8dd14af3c627a0.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ac/e4967590b578764fef50663f8dd14af3c627a0.debug debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/aa objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/aa/132d22b3a1bab367ead210cfca4527fb9aacc3.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/aa/132d22b3a1bab367ead210cfca4527fb9aacc3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/aa/132d22b3a1bab367ead210cfca4527fb9aacc3.debug debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d1 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-315-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d1/dcf5624ced0b264560bdd1f87bd4788ad8de64.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d1/dcf5624ced0b264560bdd1f87bd4788ad8de64.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/d1/dcf5624ced0b264560bdd1f87bd4788ad8de64.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/20 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-314-loongarch64-linux-gnu.so 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/91/1941d3d64a60c6501f73a40962a0f0c8466f57.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/91/1941d3d64a60c6501f73a40962a0f0c8466f57.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/91/1941d3d64a60c6501f73a40962a0f0c8466f57.debug debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/88 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-314-loongarch64-linux-gnu.so debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/88/c468c2e58bf6320b1eacf0c4dfcd1a619e653c.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/88/c468c2e58bf6320b1eacf0c4dfcd1a619e653c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-314-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/88/c468c2e58bf6320b1eacf0c4dfcd1a619e653c.debug debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-314-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/a9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-315-loongarch64-linux-gnu.so 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c6/446171f8914d2ac914f5e7a1a13fa19b056315.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c6/446171f8914d2ac914f5e7a1a13fa19b056315.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-315-loongarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c6/446171f8914d2ac914f5e7a1a13fa19b056315.debug debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-315-loongarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ff objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-314-loongarch64-linux-gnu.so 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objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_svd debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0a/cccc60de5db8e238b0955c0c2e18afaa2a0f97.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0a/cccc60de5db8e238b0955c0c2e18afaa2a0f97.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_svd objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/0a/cccc60de5db8e238b0955c0c2e18afaa2a0f97.debug debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_svd install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/ec objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_givens 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debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/20/3e5154db8f34a4efa2a888fe917de5f74f5eb5.debug debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_1 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3d objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_ref_matrix_facet debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3d/b8857bafc6bcd261bd72808d19525d0d0b2e68.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3d/b8857bafc6bcd261bd72808d19525d0d0b2e68.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_ref_matrix_facet objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/3d/b8857bafc6bcd261bd72808d19525d0d0b2e68.debug debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_ref_matrix_facet install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_accessors debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/0953a482c970b111845139d20d710a8251343b.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/0953a482c970b111845139d20d710a8251343b.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_accessors objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/49/0953a482c970b111845139d20d710a8251343b.debug debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_accessors install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/71 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_vec3 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/71/e97803db59cc7918a01d769eed96cdf41272f7.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/71/e97803db59cc7918a01d769eed96cdf41272f7.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_vec3 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/71/e97803db59cc7918a01d769eed96cdf41272f7.debug debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_vec3 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c9 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_mat3 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c9/bd3d5596cda57b3e1aa1d587edf97270e7c056.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c9/bd3d5596cda57b3e1aa1d587edf97270e7c056.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_mat3 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/c9/bd3d5596cda57b3e1aa1d587edf97270e7c056.debug debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_mat3 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/91 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_4 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/91/03aaf57d0666ad1892db80b45b811c38d15e19.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/91/03aaf57d0666ad1892db80b45b811c38d15e19.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_4 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/91/03aaf57d0666ad1892db80b45b811c38d15e19.debug debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_4 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/da objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_2 debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/da/0ccf9a45e03e59f9623dc2314b5c1ad9137f57.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/da/0ccf9a45e03e59f9623dc2314b5c1ad9137f57.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_2 objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/da/0ccf9a45e03e59f9623dc2314b5c1ad9137f57.debug debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_2 install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83 objcopy --only-keep-debug --compress-debug-sections debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_unsigned_float_arithmetic debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/02729d739084557f99383833cf8013dbb4bb99.debug chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/02729d739084557f99383833cf8013dbb4bb99.debug strip --remove-section=.comment --remove-section=.note debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_unsigned_float_arithmetic objcopy --add-gnu-debuglink debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.build-id/83/02729d739084557f99383833cf8013dbb4bb99.debug debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_unsigned_float_arithmetic install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-cctbx/usr/lib/debug/.dwz/loongarch64-linux-gnu debian/.debhelper/python3-cctbx/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-cctbx/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-cctbx/usr/lib/debug install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/usr/share/doc ln -s python3-cctbx debian/.debhelper/python3-cctbx/dbgsym-root/usr/share/doc/python3-cctbx-dbgsym install -m0755 -d debian/.debhelper/python3-cctbx dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/libcctbx0/DEBIAN/shlibs install -m0755 -d debian/libcctbx0/DEBIAN echo "libann_adaptor 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libasymmetric_map 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libcbf-private 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libccp4io 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libcctbx 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libcctbx_sgtbx_asu 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libdxtbxspotfinder 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libiotbx_mtz 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libiotbx_pdb 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libiotbx_xplor 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libmmtbx_masks 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libmmtbx_tls 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libomptbx 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "librstbx 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libscitbx_boost_python 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libscitbx_minpack 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libscitbx_slatec 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libsmtbx_refinement_constraints 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libspotfinder 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs echo "libxcif 0 libcctbx0 (>= 2026.9+ds2+~3.30.1+ds1)" >> debian/libcctbx0/DEBIAN/shlibs chmod 0644 -- debian/libcctbx0/DEBIAN/shlibs mv debian/.debhelper/generated/libcctbx0/triggers.new debian/.debhelper/generated/libcctbx0/triggers rm -f debian/libcctbx-dev/DEBIAN/shlibs rm -f debian/python3-cctbx/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/DEBIAN dpkg-shlibdeps -Tdebian/libcctbx0.substvars debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/librstbx.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcctbx.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcbf-private.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libann_adaptor.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libxcif.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libccp4io.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libspotfinder.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libasymmetric_map.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libomptbx.so.0.0.1 debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so.0.0.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-loongarch-lp64d.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-loongarch-lp64d.so.1.usr-is-merged dpkg-shlibdeps: warning: symbol PyObject_IsTrue used by debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyImport_ImportModule used by debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyRange_Type used by debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_RuntimeError used by debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyExc_IndexError used by debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyObject_CallFunction used by debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_NoneStruct used by debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _Py_Dealloc used by debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol PyErr_SetString used by debian/libcctbx0/usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 found in none of the libraries install -m0755 -d debian/python3-cctbx/DEBIAN dpkg-shlibdeps -Tdebian/python3-cctbx.substvars debian/python3-cctbx/usr/bin/cctbx.find_distances debian/python3-cctbx/usr/bin/cbflib.tst_memory debian/python3-cctbx/usr/bin/cctbx.lattice_symmetry debian/python3-cctbx/usr/bin/cctbx.sys_abs_equiv_space_groups debian/python3-cctbx/usr/bin/cctbx.sym_equiv_sites debian/python3-cctbx/usr/bin/cctbx.getting_started debian/python3-cctbx/usr/bin/cctbx_blobs debian/python3-cctbx/usr/bin/cctbx.convert_ccp4_symop_lib debian/python3-cctbx/usr/lib/cctbx/python3.15/boost_adaptbx/tests/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.15/smtbx/refinement/constraints/tests/tst_reparametrisation debian/python3-cctbx/usr/lib/cctbx/python3.15/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens debian/python3-cctbx/usr/lib/cctbx/python3.15/smtbx/refinement/constraints/tests/tst_special_position debian/python3-cctbx/usr/lib/cctbx/python3.15/iotbx/pdb/hybrid_36_fem debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/serialization/tst_base_256 debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/matrix/tests/tst_householder debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/matrix/tests/tst_svd debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/matrix/tests/tst_givens debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/matrix/tests/tst_cholesky debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/error/tst_error debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/lbfgs/tst_lbfgs debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/math/tests/tst debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/array_family/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/array_family/tst_rectangular_full_packed debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/array_family/tst_sym_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/array_family/tst_af_3 debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/array_family/tst_af_5 debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/array_family/tst_af_1 debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/array_family/tst_ref_matrix_facet debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/array_family/tst_accessors debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/array_family/tst_vec3 debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/array_family/tst_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/array_family/tst_af_4 debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/array_family/tst_af_2 debian/python3-cctbx/usr/lib/cctbx/python3.15/scitbx/array_family/tst_unsigned_float_arithmetic debian/python3-cctbx/usr/lib/cctbx/python3.14/boost_adaptbx/tests/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_reparametrisation debian/python3-cctbx/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens debian/python3-cctbx/usr/lib/cctbx/python3.14/smtbx/refinement/constraints/tests/tst_special_position debian/python3-cctbx/usr/lib/cctbx/python3.14/iotbx/pdb/hybrid_36_fem debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/serialization/tst_base_256 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_householder debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_svd debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_givens debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/matrix/tests/tst_cholesky debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/error/tst_error debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/lbfgs/tst_lbfgs debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/math/tests/tst debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_optional_copy debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_rectangular_full_packed debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_sym_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_5 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_1 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_ref_matrix_facet debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_accessors debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_vec3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_mat3 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_4 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_af_2 debian/python3-cctbx/usr/lib/cctbx/python3.14/scitbx/array_family/tst_unsigned_float_arithmetic debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/xcif_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/xcif_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-315-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-314-loongarch64-linux-gnu.so debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-315-loongarch64-linux-gnu.so dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-loongarch-lp64d.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-loongarch-lp64d.so.1.usr-is-merged dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/xcif_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_OverflowError: it is probably a plugin dpkg-shlibdeps: warning: 22 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyDict_Next: it is probably a plugin dpkg-shlibdeps: warning: 28 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyIter_Check: it is probably a plugin dpkg-shlibdeps: warning: 24 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_primitive_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_IsInstance: it is probably a plugin dpkg-shlibdeps: warning: 30 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_StopIteration: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyIter_Next: it is probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_Hash: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyIter_Check: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_AsUTF8String: it is probably a plugin dpkg-shlibdeps: warning: 55 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_GetIter: it is probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_constraints_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 30 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 15 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Occurred: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyList_Type: it is probably a plugin dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_HasAttrString: it is probably a plugin dpkg-shlibdeps: warning: 23 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 15 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_TypeError: it is probably a plugin dpkg-shlibdeps: warning: 32 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_metric_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_xplor_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_max_lik_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 30 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyIter_Next: it is probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_HasAttrString: it is probably a plugin dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_optimise_amplitudes_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_CallFunction: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_hierarchy_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 32 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_RuntimeError: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_merging_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyIter_Check: it is probably a plugin dpkg-shlibdeps: warning: 29 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_tuple_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_imageset_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_Size: it is probably a plugin dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_Size: it is probably a plugin dpkg-shlibdeps: warning: 22 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_translation_search_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_IsInstance: it is probably a plugin dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_map_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_glmtbx_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_GetItem: it is probably a plugin dpkg-shlibdeps: warning: 28 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_distltbx_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simage_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_Size: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 30 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_shared_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_IsInstance: it is probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adp_restraints_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 22 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_restraints_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_GetItem: it is probably a plugin dpkg-shlibdeps: warning: 29 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_sasaki_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_least_squares_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyList_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_bulk_solvent_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_multipolar_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 18 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_icsd_radii_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_StopIteration: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_single_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyList_Type: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_symmetry_constraints_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_masking_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_python_streambuf_test_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/std_pair_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_IsInstance: it is probably a plugin dpkg-shlibdeps: warning: 24 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_chemical_elements_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_utils_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_FromStringAndSize: it is probably a plugin dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_attenuation_coefficient_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 23 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Occurred: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_asa_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_graph_structure_comparison_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 30 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_StopIteration: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Clear: it is probably a plugin dpkg-shlibdeps: warning: 24 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 34 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_HasAttrString: it is probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lstbx_normal_equations_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 15 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_symmetry_search_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_detectors_bruker_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_xray_scattering_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 19 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bpcx_detector_model_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 25 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it is probably a plugin dpkg-shlibdeps: warning: 27 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_masks_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dynamics_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_shelx_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_crystal_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 28 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_glu_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyComplex_Type: it is probably a plugin dpkg-shlibdeps: warning: 25 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_set_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_GetIter: it is probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_rational_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_image_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Occurred: it is probably a plugin dpkg-shlibdeps: warning: 23 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_secondary_structure_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_dmtbx_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_den_restraints_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_fp_fdp_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_scalepack_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/annlib_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_building_loop_closure_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_french_wilson_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_tiny_pse_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_rigid_body_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_optional_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_format_nexus_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_r3_utils_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 19 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_array_family_flex_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Print: it is probably a plugin dpkg-shlibdeps: warning: 55 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_sphere_surface_sampling_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_math_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyComplex_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_hybrid_times_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reference_coordinate_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it is probably a plugin dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_dssp_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_GetIter: it is probably a plugin dpkg-shlibdeps: warning: 18 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_probe_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Occurred: it is probably a plugin dpkg-shlibdeps: warning: 24 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_asu_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_HasAttrString: it is probably a plugin dpkg-shlibdeps: warning: 18 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dsn6_map_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_bandpass_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_gl_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgs_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cma_es_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_graphics_utils_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rsr_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_cif_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_decompose_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_miller_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 25 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_sparse_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 23 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_scaling_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_orientation_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_iso_surface_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_adptbx_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_RuntimeError: it is probably a plugin dpkg-shlibdeps: warning: 19 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_min_cut_max_flow_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_IsInstance: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_refinement_restraints_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_emma_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_diffraction_fastbragg_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_suffixtree_shared_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_utility_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_shared_types_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_utils_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_hough_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Occurred: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_maximum_clique_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_observations_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_StopIteration: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_reduce_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_GetItem: it is probably a plugin dpkg-shlibdeps: warning: 30 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_boost_thread_test_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_dtrek_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_alignment_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_fonts_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_structure_factors_direct_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_sgtbx_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it is probably a plugin dpkg-shlibdeps: warning: 27 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ramachandran_restraints_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Occurred: it is probably a plugin dpkg-shlibdeps: warning: 24 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_simulation_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_cartesian_restraints_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cbflib_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_pdb_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_dxtbx_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_pair_interaction_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyList_Type: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_validation_ramachandran_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_henke_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyUnicode_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_ab_initio_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_ncs_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_Size: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/regression_test_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyIter_Check: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_random_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_quadrics_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyIter_Check: it is probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_ccp4_map_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_stl_vector_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_GetIter: it is probably a plugin dpkg-shlibdeps: warning: 19 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_array_family_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_clustering_algorithm_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyDict_Type: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_xray_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyDict_Next: it is probably a plugin dpkg-shlibdeps: warning: 28 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_FromDouble: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_breadth_first_search_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromUnsignedLong: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_python_meta_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 25 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_mtz_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PySlice_Type: it is probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_indexing_api_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_IsInstance: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyExc_IndexError: it is probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_maptbx_bcr_bcr_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_anharmonic_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_statistics_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_covalent_radii_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_rotamer_fit_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyCapsule_Type: it is probably a plugin dpkg-shlibdeps: warning: 139 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_neutron_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/boost_adaptbx_graph_connected_component_algorithm_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/fable_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_Size: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/iotbx_wildcard_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_hydrogens_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 15 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/xcif_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 22 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_clash_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/determine_unit_cell_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_geometry_indexing_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_lbfgsb_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_NoneStruct: it is probably a plugin dpkg-shlibdeps: warning: 9 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_fftpack_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_flumpy.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBuffer_IsContiguous: it is probably a plugin dpkg-shlibdeps: warning: 139 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_eltbx_wavelengths_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_asymmetric_map_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_f_model_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyRange_Type: it is probably a plugin dpkg-shlibdeps: warning: 15 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_math_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 17 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/rstbx_integration_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_Type: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_viewer_utils_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_masks_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_SetString: it is probably a plugin dpkg-shlibdeps: warning: 8 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/gltbx_util_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_Type: it is probably a plugin dpkg-shlibdeps: warning: 18 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_covariance_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_wigner_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyBool_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/omptbx_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyTuple_New: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_uctbx_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_CallFunction: it is probably a plugin dpkg-shlibdeps: warning: 15 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/dxtbx_model_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyErr_Occurred: it is probably a plugin dpkg-shlibdeps: warning: 34 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/cctbx_geometry_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyFloat_Type: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/spotfinder_array_family_flex_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyRange_Type: it is probably a plugin dpkg-shlibdeps: warning: 24 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_tls_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyList_Type: it is probably a plugin dpkg-shlibdeps: warning: 13 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/mmtbx_mosaic_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyObject_Size: it is probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_cubicle_neighbors_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_linalg_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol _Py_Dealloc: it is probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/smtbx_stl_map_ext.cpython-314-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/python3-cctbx/usr/lib/python3/dist-packages/scitbx_minpack_ext.cpython-315-loongarch64-linux-gnu.so contains an unresolvable reference to symbol PyLong_FromLong: it is probably a plugin dpkg-shlibdeps: warning: 7 other similar warnings have been skipped (use -v to see them all) dh_installdeb -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/DEBIAN install -p -m0644 debian/.debhelper/generated/libcctbx0/triggers debian/libcctbx0/DEBIAN/triggers install -m0755 -d debian/libcctbx-dev/DEBIAN install -m0755 -d debian/python3-cctbx/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-cctbx/DEBIAN/postinst cat debian/python3-cctbx.postinst.debhelper >> debian/python3-cctbx/DEBIAN/postinst chmod 0755 -- debian/python3-cctbx/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-cctbx/DEBIAN/prerm cat debian/python3-cctbx.prerm.debhelper >> debian/python3-cctbx/DEBIAN/prerm chmod 0755 -- debian/python3-cctbx/DEBIAN/prerm dh_numpy3 -a -O--buildsystem=pybuild Possible precedence problem between ! and pattern match (m//) at /usr/bin/dh_numpy3 line 68. dh_numpy3: skipping binary package libcctbx0 which does not depend on the NumPy C ABI dh_numpy3: skipping binary package libcctbx-dev which does not depend on the NumPy C ABI mv debian/python3-cctbx.substvars.new debian/python3-cctbx.substvars dh_gencontrol -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/DEBIAN echo misc:Depends= >> debian/libcctbx0.substvars echo misc:Pre-Depends= >> debian/libcctbx0.substvars install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN dpkg-gencontrol -plibcctbx0 -ldebian/changelog -Tdebian/libcctbx0.substvars -cdebian/control -Pdebian/.debhelper/libcctbx0/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libcctbx0-dbgsym -DDepends="libcctbx0 (= \${binary:Version})" -DDescription="debug symbols for libcctbx0" -DBuild-Ids="0a527cc0727de870d7ce3862c2c03b2e8f7cc02c 1b8ef92d5860e63f40e22c9756002e126c57fa3d 227ea0e3feafa8a96524d67c0cc480340a56400e 294f767d1e3de59ff12779e2d533e5c76f2f8972 2c80f5943caf57ca0b9231f37120e9ddce786bad 3427e5299b098e8e800adeade7a2fb0f38cd7271 3b9f5013c96962f9e091080c151206092147264b 3cc6e59525b8b42997cd75ab6fc76ee9218589f8 577194965500874a1f058b9c654403f70080ed9a 720c3c6eeb7f05f60847c5df0029aa49aa6e783a 8537763931ddeddaf57d5b0e6874a389f2f34ca5 8d82cc49f448a454cc83cea9ac0e033b74251db6 af42174ccb5798507476edbff5e4499105e45cef c417cbcc000871ee822918bfa2feb1a2093d8f9c c493d5c4c3a0b55feac97626c51da8c24e609d58 cbb149d75991b69ae154c838e94c23ab39e46137 d4b91b024a276321d739a09860031663255d5a85 d931d54d99026af07f3436a793f233e1a481c845 e64f989ce2986d8f2136b9f0e345626c4a5af8e3 f0691ec4a39d6e11441607f5cf75049fa305815a" -DSection=debug -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/libcctbx-dev/DEBIAN echo misc:Depends= >> debian/libcctbx-dev.substvars echo misc:Pre-Depends= >> debian/libcctbx-dev.substvars dpkg-gencontrol -plibcctbx-dev -ldebian/changelog -Tdebian/libcctbx-dev.substvars -cdebian/control -Pdebian/libcctbx-dev install -m0755 -d debian/python3-cctbx/DEBIAN echo misc:Depends= >> debian/python3-cctbx.substvars echo misc:Pre-Depends= >> debian/python3-cctbx.substvars install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-cctbx -ldebian/changelog -Tdebian/python3-cctbx.substvars -cdebian/control -Pdebian/.debhelper/python3-cctbx/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-cctbx-dbgsym -DDepends="python3-cctbx (= \${binary:Version})" -DDescription="debug symbols for python3-cctbx" -DBuild-Ids="005b0b531c506b6824a0094b0c86f4554c79a6c0 007de5dc76b0e7f1bc9a9669996c773df88a5cb4 008fdf8812ab9247c827863499d8ec50c594a684 00a66a0697f7897f2533ae8c0f8d3d129d7eb134 011dd15dc8bad47834b8c215968c1fc6defae077 01efdc2f5f3c1913d987de10a031b88b8ebae5ca 0369e5241a3210a93432527772fe64af0a1ce641 0438b0b942f8cb331ed4c7f30b4aa287f5001167 050a76cd3a2489010c0d4bf334ee1bb5132a6a6f 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eb9c246779e6da023bf1d8de94b08b6e98f8d9d4 ec2de10754f65ec91ac3510bc70e5c8e74bd0368 ec500efcfa1ac8df6d6d6b84089274dab401798a ec5ad799c1b21a1d62f6fed5bdec454c8d2b13de ecb86bb7b377e0a58278d5ef967b086db1896985 ee93c2928f9593e902b8d2d80014ef4e8808ecd8 eeefab61bf78b38386d3943579c07fdb77552f87 ef94aa33d2ebd67890c66fd98975cb5198a6382c f09363c3048ebef59b5a46ef30a23117addce5e5 f0dc005cfd1e79bd1a114226896babffa5b79104 f1fe27764810a498dabd5210a4e52387364752e8 f21de1add8d899dec574ec546831bfb4000f10b8 f29c23988dd1fc5358c43b76ffe8120a1e04724c f3416130c2971842d7a4f1922bfa30dee586074a f5409abe34a20d190d1bbe310aea887d4caaf674 f64b4a4998389a5510e795bff8ad87228e4d55a2 f6d7a16b5ac8e36a215dd306ec71c7becdd25f8b f7076393b2a8fccc07bb1dfa89269a4b6e1149bf f70f9acb99b023aaf4c7412f426fce4d6a5d95ba f74c0a5ca860769c4d3ec1caedcd727231443e06 f7c7af88372bce466bad7703208e035f62f4d2cd f7f08e2ebfa157cf74eec7c5b0d9f5ea7b1eb0bc f997fc00b0f072e1e99edde4e439258760bfd2fc fa8610c3b17873db1682c2c4a72e6b984aac6127 fc1058d3574315591d24c87972a14c14a4ad4916 ff95e2b2537436e9ebf3a0e1544c39b365df2afc ffc96d6d3e585f8d268354fdc44d6a18a2ed2471" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibcctbx0 -ldebian/changelog -Tdebian/libcctbx0.substvars -cdebian/control -Pdebian/libcctbx0 chmod 0644 -- debian/libcctbx-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-cctbx -ldebian/changelog -Tdebian/python3-cctbx.substvars -cdebian/control -Pdebian/python3-cctbx chmod 0644 -- debian/libcctbx0/DEBIAN/control chmod 0644 -- debian/python3-cctbx/DEBIAN/control dh_md5sums -a -O--buildsystem=pybuild install -m0755 -d debian/libcctbx0/DEBIAN install -m0755 -d debian/python3-cctbx/DEBIAN install -m0755 -d debian/libcctbx-dev/DEBIAN cd debian/libcctbx0 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libcctbx-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-cctbx >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libcctbx0/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN cd debian/.debhelper/libcctbx0/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libcctbx-dev/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libcctbx0/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/python3-cctbx/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-cctbx/dbgsym-root/DEBIAN cd debian/.debhelper/python3-cctbx/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-cctbx/dbgsym-root/DEBIAN/md5sums dh_builddeb -a -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/libcctbx0 .. dpkg-deb --root-owner-group --build debian/python3-cctbx .. dpkg-deb --root-owner-group --build debian/.debhelper/libcctbx0/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libcctbx-dev .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-cctbx/dbgsym-root .. dpkg-deb: building package 'libcctbx0' in '../libcctbx0_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb'. dpkg-deb: building package 'python3-cctbx' in '../python3-cctbx_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb'. dpkg-deb: building package 'libcctbx-dev' in '../libcctbx-dev_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb'. dpkg-deb: building package 'libcctbx0-dbgsym' in '../libcctbx0-dbgsym_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb'. dpkg-deb: building package 'python3-cctbx-dbgsym' in '../python3-cctbx-dbgsym_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb'. dpkg-genbuildinfo --build=any -O../cctbx_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.buildinfo dpkg-genchanges --build=any -O../cctbx_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2026-11-06T06:32:20Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes Fri, 06 Nov 2026 06:32:22 +0000 | +------------------------------------------------------------------------------+ cctbx_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.changes: -------------------------------------------------- Format: 1.8 Date: Mon, 05 Oct 2026 19:33:31 +0000 Source: cctbx (2026.9+ds2+~3.30.1+ds1-1) Binary: libcctbx-dev libcctbx0 libcctbx0-dbgsym python3-cctbx python3-cctbx-dbgsym Binary-Only: yes Architecture: loong64 Version: 2026.9+ds2+~3.30.1+ds1-1+b2 Distribution: unstable Urgency: low Maintainer: Debian Science Maintainers Changed-By: loong64 Build Daemon (loongson-conova-02) Description: libcctbx-dev - Computational Crystallography Toolbox - headers libcctbx0 - Computational Crystallography Toolbox - runtime libraries python3-cctbx - Python Toolbox for crystallography Changes: cctbx (2026.9+ds2+~3.30.1+ds1-1+b2) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for loong64; no source changes. * Rebuild with Python 3.15 as supported version Checksums-Sha1: 9f1381b6e76d22df72610e1fa28097a5b18dd40f 23083 cctbx_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.buildinfo 2d2d2634567baf589aa90638250a378128f94e4f 1175448 libcctbx-dev_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb 649aeb1f2164ebcd2e2a283e3aba6d628e0f0148 9851976 libcctbx0-dbgsym_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb 2034d0c039798add9c0dce4b033577684e4936dc 2240176 libcctbx0_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb a2a3cb8745e57e1e3d3251a036f585e85461731e 286321896 python3-cctbx-dbgsym_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb 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cctbx_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.buildinfo 7cb5fd22eb5fbeaac2345127bcf0147d 1175448 libdevel optional libcctbx-dev_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb db288555a25a4bac4fbdbf518cb62a4c 9851976 debug optional libcctbx0-dbgsym_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb ed5d85e80181429a933c7185efa89545 2240176 libs optional libcctbx0_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb ae0dc96e671cdd2005aa2c62a9fd7b7c 286321896 debug optional python3-cctbx-dbgsym_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb 076dd720912b1f655037941d82652bc4 128135524 python optional python3-cctbx_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb +------------------------------------------------------------------------------+ | Buildinfo Fri, 06 Nov 2026 06:32:23 +0000 | +------------------------------------------------------------------------------+ Format: 1.0 Source: cctbx (2026.9+ds2+~3.30.1+ds1-1) Binary: libcctbx-dev libcctbx0 libcctbx0-dbgsym python3-cctbx python3-cctbx-dbgsym Architecture: loong64 Version: 2026.9+ds2+~3.30.1+ds1-1+b2 Binary-Only-Changes: cctbx (2026.9+ds2+~3.30.1+ds1-1+b2) sid; urgency=low, binary-only=yes . * Binary-only non-maintainer upload for loong64; no source changes. * Rebuild with Python 3.15 as supported version . -- loong64 Build Daemon (loongson-conova-02) Mon, 05 Oct 2026 19:33:31 +0000 Checksums-Md5: 7cb5fd22eb5fbeaac2345127bcf0147d 1175448 libcctbx-dev_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb db288555a25a4bac4fbdbf518cb62a4c 9851976 libcctbx0-dbgsym_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb ed5d85e80181429a933c7185efa89545 2240176 libcctbx0_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb ae0dc96e671cdd2005aa2c62a9fd7b7c 286321896 python3-cctbx-dbgsym_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb 076dd720912b1f655037941d82652bc4 128135524 python3-cctbx_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb Checksums-Sha1: 2d2d2634567baf589aa90638250a378128f94e4f 1175448 libcctbx-dev_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb 649aeb1f2164ebcd2e2a283e3aba6d628e0f0148 9851976 libcctbx0-dbgsym_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb 2034d0c039798add9c0dce4b033577684e4936dc 2240176 libcctbx0_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb a2a3cb8745e57e1e3d3251a036f585e85461731e 286321896 python3-cctbx-dbgsym_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb f48e599f2e979edf3849b476a0e96399b5e17a3e 128135524 python3-cctbx_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb Checksums-Sha256: eca7bf6eb22f8d082b1444eea935581efd1ae0d1e2ca4a003b02cc9f826650bb 1175448 libcctbx-dev_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb c8a705ad05cf42f259604e77f901bd7075519c6f6d61a4391d41c156144af439 9851976 libcctbx0-dbgsym_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb edfc19cb41ae3702eb1406f6c460f32f139a56d78322b86bb59907fcd32ccfce 2240176 libcctbx0_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb 5c1b6ae43e9c547dbf0270a7a7de7e49ae3b395f4d22a17aacaaa4ef7e073e37 286321896 python3-cctbx-dbgsym_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb a653427f3fe843afa7c1ff7dffe751c14e98e06478678c0abe85c3e86170fc58 128135524 python3-cctbx_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb Build-Origin: Debian Build-Architecture: loong64 Build-Date: Fri, 06 Nov 2026 06:32:15 +0000 Build-Path: /build/reproducible-path/cctbx-2026.9+ds2+~3.30.1+ds1 Installed-Build-Depends: adwaita-icon-theme (= 51.0-1), architecture-properties (= 0.2.6+b2), at-spi2-common (= 2.62.1-1), autoconf (= 2.73-2), automake (= 1:1.19-3), autopoint (= 1.0-5), autotools-dev (= 20240727.1+nmu1), base-files (= 14.2), base-passwd (= 3.6.8+b1), bash (= 5.3-4), binutils (= 2.47.50.20261021-1), binutils-common (= 2.47.50.20261021-1), binutils-loongarch64-linux-gnu (= 2.47.50.20261021-1), bsdextrautils (= 2.42.4-1), bubblewrap (= 0.13.1-1), build-essential (= 12.12+b1), bzip2 (= 1.0.8-6+b2), ca-certificates (= 20260816+nmu1), comerr-dev (= 2.1-1.47.4-1+b2), coreutils (= 9.10-1), cpp (= 4:16.1.0-3), cpp-16 (= 16.2.0-4), cpp-16-loongarch64-linux-gnu (= 16.2.0-4), cpp-loongarch64-linux-gnu (= 4:16.1.0-3), dash (= 0.5.12-12+b1), dbus (= 1.16.2-8), dbus-bin (= 1.16.2-8), dbus-daemon (= 1.16.2-8), dbus-session-bus-common (= 1.16.2-8), dbus-system-bus-common (= 1.16.2-8), dbus-user-session (= 1.16.2-8), dconf-gsettings-backend (= 51.0-2), dconf-service (= 51.0-2), debconf (= 1.5.92), debhelper (= 14.5), debianutils (= 5.24), dh-autoreconf (= 23), dh-exec (= 0.31+b2), dh-python (= 7.20261030), dh-strip-nondeterminism (= 1.15.1-1), diffutils (= 1:3.12-1+b1), dpkg (= 1.23.11), dpkg-dev (= 1.23.11), dwz (= 0.17-1), fftw-dev (= 2.1.5-8), fftw2 (= 2.1.5-8), file (= 1:5.47-4), findutils (= 4.11.0-3), fontconfig (= 2.17.1-5), fontconfig-config (= 2.17.1-5), fonts-dejavu-core (= 2.37-9), fonts-dejavu-extra (= 2.37-9), fonts-dejavu-mono (= 2.37-9), fonts-font-awesome (= 7.3.0+dfsg-1), fonts-font-awesome-legacy (= 6-4), fonts-lato (= 2.015-1), fonts-lyx (= 2.5.3-2), fonts-roboto-slab (= 2.002+20231012+ds-1), fonts-urw-base35 (= 20200910-9), g++ (= 4:16.1.0-3), g++-16 (= 16.2.0-4), g++-16-loongarch64-linux-gnu (= 16.2.0-4), g++-loongarch64-linux-gnu (= 4:16.1.0-3), gcc (= 4:16.1.0-3), gcc-16 (= 16.2.0-4), gcc-16-base (= 16.2.0-4), gcc-16-loongarch64-linux-gnu (= 16.2.0-4), gcc-loongarch64-linux-gnu (= 4:16.1.0-3), gettext (= 1.0-5), gettext-base (= 1.0-5), glycin-loaders (= 2.2.3+ds-1), glycin-thumbnailers (= 2.2.3+ds-1), grep (= 3.12-1+b1), groff-base (= 1.24.2-2), gsettings-desktop-schemas (= 51.0-2), gtk-update-icon-cache (= 4.24.1+ds-1), gzip (= 1.14-1), hdf5-helpers (= 2.2.0+repack-6), hicolor-icon-theme (= 0.18-2), hostname (= 3.25+b1), ibverbs-providers (= 65.0-1.1), init-system-helpers (= 1.69+nmu3), intltool-debian (= 0.35.0+20060710.6), jq (= 1.8.2-1), krb5-multidev (= 1.22.1-3), libabsl20260526 (= 20260526.0-2+b1), libacl1 (= 2.4.0-1), libaec-dev (= 1.1.7-1), libaec0 (= 1.1.7-1), libann-cctbx-dev (= 1.1.2+doc-9+b1), libann-cctbx0 (= 1.1.2+doc-9+b1), libantlr3c-3.4-0 (= 3.4+dfsg-4+b3), libantlr3c-dev (= 3.4+dfsg-4+b3), libaom3 (= 3.14.1-1), libapparmor1 (= 5.0.2-5), libarchive-zip-perl (= 1.68-1), libasan8 (= 16.2.0-4), libasound2-data (= 1.2.16.1-2), libasound2t64 (= 1.2.16.1-2), libasyncns0 (= 0.8-8), libatk-bridge2.0-0t64 (= 2.62.1-1), libatk1.0-0t64 (= 2.62.1-1), libatomic1 (= 16.2.0-4), libatspi2.0-0t64 (= 2.62.1-1), libattr1 (= 1:2.6.0-1), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1+b2), libavahi-client3 (= 0.8-18), libavahi-common-data (= 0.8-18), libavahi-common3 (= 0.8-18), libavif16 (= 1.4.2-1), libbinutils (= 2.47.50.20261021-1), libblas3 (= 3.12.1-8), libblkid1 (= 2.42.4-1), libboost-atomic1.92-dev (= 1.92.0-4+b1), libboost-atomic1.92.0 (= 1.92.0-4+b1), libboost-chrono1.92-dev (= 1.92.0-4+b1), libboost-chrono1.92.0 (= 1.92.0-4+b1), libboost-container1.92-dev (= 1.92.0-4+b1), libboost-container1.92.0 (= 1.92.0-4+b1), libboost-date-time1.92-dev (= 1.92.0-4+b1), libboost-date-time1.92.0 (= 1.92.0-4+b1), libboost-dev (= 1.92.0.1), libboost-exception1.92-dev (= 1.92.0-4+b1), libboost-graph1.92-dev (= 1.92.0-4+b1), libboost-graph1.92.0 (= 1.92.0-4+b1), libboost-math1.92-dev (= 1.92.0-4+b1), libboost-math1.92.0 (= 1.92.0-4+b1), libboost-numpy-dev (= 1.92.0.1), libboost-numpy1.92-dev (= 1.92.0-4+b1), libboost-numpy1.92.0 (= 1.92.0-4+b1), libboost-python-dev (= 1.92.0.1), libboost-python1.92-dev (= 1.92.0-4+b1), libboost-python1.92.0 (= 1.92.0-4+b1), libboost-random1.92-dev (= 1.92.0-4+b1), libboost-random1.92.0 (= 1.92.0-4+b1), libboost-regex1.92-dev (= 1.92.0-4+b1), libboost-regex1.92.0 (= 1.92.0-4+b1), libboost-serialization1.92-dev (= 1.92.0-4+b1), libboost-serialization1.92.0 (= 1.92.0-4+b1), libboost-test1.92-dev (= 1.92.0-4+b1), libboost-test1.92.0 (= 1.92.0-4+b1), libboost-thread-dev (= 1.92.0.1), libboost-thread1.92-dev (= 1.92.0-4+b1), libboost-thread1.92.0 (= 1.92.0-4+b1), libboost-timer-dev (= 1.92.0.1), libboost-timer1.92-dev (= 1.92.0-4+b1), libboost-timer1.92.0 (= 1.92.0-4+b1), libboost1.92-dev (= 1.92.0-4+b1), libbrotli-dev (= 1.2.0-4.1), libbrotli1 (= 1.2.0-4.1), libbsd0 (= 0.12.2-3), libbz2-1.0 (= 1.0.8-6+b2), libc-bin (= 2.43-7), libc-dev-bin (= 2.43-7), libc-gconv-modules-extra (= 2.43-7), libc6 (= 2.43-7), libc6-dev (= 2.43-7), libcairo-gobject2 (= 1.18.4-3+b1), libcairo2 (= 1.18.4-3+b1), libcap-ng0 (= 0.9.6-1+b1), libcap2 (= 1:2.78-1+b1), libcbf-dev (= 0.9.7+dfsg1-5.1+b4), libcbf1t64 (= 0.9.7+dfsg1-5.1+b4), libcc1-0 (= 16.2.0-4), libccp4-data (= 8.0.0-5), libccp4-dev (= 8.0.0-5+b1), libccp4c0t64 (= 8.0.0-5+b1), libccp4f0t64 (= 8.0.0-5+b1), libclipper-dev (= 2.1.20201109-2+b4), libclipper2 (= 2.1.20201109-2+b4), libcloudproviders0 (= 0.4.1-1), libcolord2 (= 1.4.8-3), libcom-err2 (= 1.47.4-1+b2), libcrypt1 (= 1:4.5.2+20251210-1), libctf-nobfd0 (= 2.47.50.20261021-1), libctf0 (= 2.47.50.20261021-1), libcups2t64 (= 2.4.20-1), libcurl4-gnutls (= 8.23.0-1), libcurl4-openssl-dev (= 8.23.0-1), libcurl4t64 (= 8.23.0-1), libdatrie1 (= 0.2.14-2), libdav1d7 (= 1.5.4-1), libdb5.3t64 (= 5.3.28+dfsg2-11+b1), libdbus-1-3 (= 1.16.2-8), libdconf1 (= 51.0-2), libde265-0 (= 1.1.3-1+b1), libdebconfclient0 (= 0.283), libdebhelper-perl (= 14.5), libdecor-0-0 (= 0.2.5-1+b1), libdeflate-dev (= 1.25-1), libdeflate0 (= 1.25-1), libdouble-conversion3 (= 3.4.0-1+b1), libdpkg-perl (= 1.23.11), libdrm-amdgpu1 (= 2.4.134-3), libdrm-common (= 2.4.134-3), libdrm2 (= 2.4.134-3), libedit2 (= 3.1-20260512-1), libegl-mesa0 (= 26.2.6-1), libegl1 (= 1.7.0-3+b1), libeigen3-dev (= 5.0.1-3), libelf1t64 (= 0.196-1), libepoxy0 (= 1.5.10-2+b2), libesmtp6 (= 1.1.0-3.2+b2), libevdev2 (= 1.14.0+dfsg-1), libevent-2.1-7t64 (= 2.1.13-stable-1), libevent-core-2.1-7t64 (= 2.1.13-stable-1), libevent-pthreads-2.1-7t64 (= 2.1.13-stable-1), libexpat1 (= 2.9.0-1), libexpat1-dev (= 2.9.0-1), libfabric1 (= 2.1.0-1.1+b2), libffi8 (= 3.8.0-2), libfftw3-bin (= 3.3.11-1), libfftw3-dev (= 3.3.11-1), libfftw3-double3 (= 3.3.11-1), libfftw3-long3 (= 3.3.11-1), libfftw3-single3 (= 3.3.11-1), libfile-stripnondeterminism-perl (= 1.15.1-1), libflac14 (= 1.5.0+ds-5+b1), libfontconfig1 (= 2.17.1-5), libfontenc1 (= 1:1.1.8-1+b3), libfreetype6 (= 2.14.3+dfsg-3), libfribidi0 (= 1.0.16-5+b1), libfuse3-4 (= 3.18.3-1), libgav1-2 (= 0.20.0-2+b2), libgbm1 (= 26.2.6-1), libgcc-16-dev (= 16.2.0-4), libgcc-s1 (= 16.2.0-4), libgcrypt20 (= 1.12.4-2), libgdbm-compat4t64 (= 1.26-1+b2), libgdbm6t64 (= 1.26-1+b2), libgdk-pixbuf-2.0-0 (= 2.44.8+dfsg-1), libgdk-pixbuf2.0-common (= 2.44.8+dfsg-1), libgfortran5 (= 16.2.0-4), libgl-dev (= 1.7.0-3+b1), libgl1 (= 1.7.0-3+b1), libgl1-mesa-dri (= 26.2.6-1), libgles2 (= 1.7.0-3+b1), libglew2.3 (= 2.3.1+dfsg2-5), libglib2.0-0t64 (= 2.90.1-2), libglu1-mesa (= 9.0.2-1.1+b4), libglu1-mesa-dev (= 9.0.2-1.1+b4), libglut3.12 (= 3.4.0-6+b2), libglvnd0 (= 1.7.0-3+b1), libglx-dev (= 1.7.0-3+b1), libglx-mesa0 (= 26.2.6-1), libglx0 (= 1.7.0-3+b1), libglycin-2-0 (= 2.2.3+ds-1), libgmp-dev (= 2:6.3.0+dfsg-5+b2), libgmp10 (= 2:6.3.0+dfsg-5+b2), libgmpxx4ldbl (= 2:6.3.0+dfsg-5+b2), libgnutls-dane0t64 (= 3.8.13-1), libgnutls28-dev (= 3.8.13-1), libgnutls30t64 (= 3.8.13-1), libgomp1 (= 16.2.0-4), libgpg-error0 (= 1.61-5), libgraphite2-3 (= 1.3.15-2), libgssapi-krb5-2 (= 1.22.1-3), libgssrpc4t64 (= 1.22.1-3), libgtk-3-0t64 (= 3.24.52-3), libgtk-3-common (= 3.24.52-3), libgudev-1.0-0 (= 238-7+b2), libharfbuzz-subset0 (= 12.3.2-2+b2), libharfbuzz0b (= 12.3.2-2+b2), libhdf5-320 (= 2.2.0+repack-6), libhdf5-cpp-320 (= 2.2.0+repack-6), libhdf5-dev (= 2.2.0+repack-6), libhdf5-fortran-320 (= 2.2.0+repack-6), libhdf5-hl-320 (= 2.2.0+repack-6), libhdf5-hl-cpp-320 (= 2.2.0+repack-6), libhdf5-hl-fortran-320 (= 2.2.0+repack-6), libheif-plugin-dav1d (= 1.23.6-2), libheif-plugin-libde265 (= 1.23.6-2), libheif1 (= 1.23.6-2), libhogweed6t64 (= 3.10.2-1+b1), libhwloc-plugins (= 2.15.0-2), libhwloc15 (= 2.15.0-2), libibverbs1 (= 65.0-1.1), libice6 (= 2:1.1.1-1+b2), libicu78 (= 78.3-2), libidn2-0 (= 2.3.8-5), libidn2-dev (= 2.3.8-5), libimagequant0 (= 4.4.1-1+b2), libinput-bin (= 1.31.3-1), libinput10 (= 1.31.3-1), libisl23 (= 0.28-1), libitm1 (= 16.2.0-4), libjansson4 (= 2.15.1-1), libjbig-dev (= 2.1-6.1+b3), libjbig0 (= 2.1-6.1+b3), libjpeg-dev (= 1:3.1.3-4), libjpeg62-turbo (= 1:3.1.3-4), libjpeg62-turbo-dev (= 1:3.1.3-4), libjq1 (= 1.8.2-1), libjs-jquery (= 3.7.1+dfsg+~3.5.33-1), libjs-sphinxdoc (= 9.2.0-1), libjxl0.11 (= 0.11.2-5.1), libk5crypto3 (= 1.22.1-3), libkadm5clnt-mit12 (= 1.22.1-3), libkadm5srv-mit12 (= 1.22.1-3), libkdb5-10t64 (= 1.22.1-3), libkeyutils1 (= 1.6.3-6+b2), libkrb5-3 (= 1.22.1-3), libkrb5-dev (= 1.22.1-3), libkrb5support0 (= 1.22.1-3), liblapack3 (= 3.12.1-8), liblcms2-2 (= 2.19.1-1), libldap-dev (= 2.6.14+dfsg-2), libldap2 (= 2.6.14+dfsg-2), liblerc-dev (= 4.2.0+ds-1), liblerc4 (= 4.2.0+ds-1), libllvm22 (= 1:22.1.8-3), liblsan0 (= 16.2.0-4), liblz4-1 (= 1.10.0-10), liblz4-dev (= 1.10.0-10), liblzf1 (= 3.6-4+b4), liblzma-dev (= 5.8.4-1), liblzma5 (= 5.8.4-1), libmagic-mgc (= 1:5.47-4), libmagic1t64 (= 1:5.47-4), libmd0 (= 1.3.0-1), libmd4c0 (= 0.5.3-1), libmmdb2-0 (= 2.0.22-1+b3), libmmdb2-dev (= 2.0.22-1+b3), libmount1 (= 2.42.4-1), libmp3lame0 (= 4.0-1), libmpc3 (= 1.3.1-3), libmpfr6 (= 4.2.2-3), libmpg123-0t64 (= 1.33.7-1), libmtdev1t64 (= 1.1.7-1+b2), libncursesw6 (= 6.6+20260608-2), libnetcdf22 (= 1:4.10.1-1+b1), libnettle8t64 (= 3.10.2-1+b1), libnghttp2-14 (= 1.70.0-1), libnghttp2-dev (= 1.70.0-1), libnghttp3-9 (= 1.17.0-1), libnghttp3-dev (= 1.17.0-1), libngtcp2-16 (= 1.24.0-1), libngtcp2-crypto-gnutls8 (= 1.24.0-1), libngtcp2-crypto-ossl-dev (= 1.24.0-1), libngtcp2-crypto-ossl0 (= 1.24.0-1), libngtcp2-dev (= 1.24.0-1), libnl-3-200 (= 3.12.0-2+b1), libnl-route-3-200 (= 3.12.0-2+b1), libnotify4 (= 0.8.9-1), libogg0 (= 1.3.6-2+b1), libonig5 (= 6.9.10-1+b1), libopengl-dev (= 1.7.0-3+b1), libopengl0 (= 1.7.0-3+b1), libopenjp2-7 (= 2.5.4-1.1), libopenmpi40 (= 6.0.0~rc2-2), libopus0 (= 1.6.1-1+b1), libp11-kit-dev (= 0.26.5-1), libp11-kit0 (= 0.26.5-1), libpam-modules (= 1.7.0-8), libpam-modules-bin (= 1.7.0-8), libpam-runtime (= 1.7.0-8), libpam-systemd (= 262.1-1), libpam0g (= 1.7.0-8), libpango-1.0-0 (= 1.58.2-1), libpangocairo-1.0-0 (= 1.58.2-1), libpangoft2-1.0-0 (= 1.58.2-1), libpciaccess0 (= 0.19-2), libpcre2-16-0 (= 10.49-1), libpcre2-32-0 (= 10.49-1), libpcre2-8-0 (= 10.49-1), libperl5.42 (= 5.42.3-1), libpipeline1 (= 1.5.8-3), libpixman-1-0 (= 0.46.4-1+b2), libpkgconf7 (= 2.5.1-4), libpmix2t64 (= 7.0.0~rc1-2+b1), libpng16-16t64 (= 1.6.59-1), libpopt0 (= 1.19+dfsg-2+b2), libproc2-1 (= 2:4.0.7-1), libpsl-dev (= 0.23.3-1), libpsl5t64 (= 0.23.3-1), libpulse0 (= 17.0+dfsg1-3), libpython3-all-dev (= 3.14.8-1), libpython3-dev (= 3.14.8-1), libpython3-stdlib (= 3.14.8-1), libpython3.14 (= 3.14.10-1), libpython3.14-dev (= 3.14.10-1), libpython3.14-minimal (= 3.14.10-1), libpython3.14-stdlib (= 3.14.10-1), libpython3.15 (= 3.15.2-1), libpython3.15-dev (= 3.15.2-1), libpython3.15-minimal (= 3.15.2-1), libpython3.15-stdlib (= 3.15.2-1), libqhull-r8.0 (= 2020.2-9), libqt5core5t64 (= 5.15.19+dfsg-6), libqt5dbus5t64 (= 5.15.19+dfsg-6), libqt5designer5 (= 5.15.19-2), libqt5gui5t64 (= 5.15.19+dfsg-6), libqt5help5 (= 5.15.19-2), libqt5network5t64 (= 5.15.19+dfsg-6), libqt5opengl5t64 (= 5.15.19+dfsg-6), libqt5printsupport5t64 (= 5.15.19+dfsg-6), libqt5sql5t64 (= 5.15.19+dfsg-6), libqt5test5t64 (= 5.15.19+dfsg-6), libqt5widgets5t64 (= 5.15.19+dfsg-6), libqt5xml5t64 (= 5.15.19+dfsg-6), libraqm0 (= 0.10.5-1), librdmacm1t64 (= 65.0-1.1), libreadline8t64 (= 8.3-4), librsvg2-2 (= 2.63.3+dfsg-1), librtmp-dev (= 2.6-1), librtmp1 (= 2.6-1), libsasl2-2 (= 2.1.28+dfsg1-12), libsasl2-modules-db (= 2.1.28+dfsg1-12), libsdl2-2.0-0 (= 2.32.74+ds-1), libsdl3-0 (= 3.4.18+ds-1), libseccomp2 (= 2.6.1-1+b2), libselinux1 (= 3.11-2.1+b1), libsensors-config (= 1:3.6.2-2), libsensors5 (= 1:3.6.2-2+b2), libsframe3 (= 2.47.50.20261021-1), libsharpyuv-dev (= 1.6.0-0.1), libsharpyuv0 (= 1.6.0-0.1), libsm6 (= 2:1.2.6-1+b2), libsmartcols1 (= 2.42.4-1), libsndfile1 (= 1.2.2-4+b1), libsqlite3-0 (= 3.53.4-2), libssh2-1-dev (= 1.11.1-6), libssh2-1t64 (= 1.11.1-6), libssl-dev (= 3.6.5-1), libssl3t64 (= 3.6.5-1), libssm-dev (= 1.4.0-2+b4), libssm2 (= 1.4.0-2+b4), libstdc++-16-dev (= 16.2.0-4), libstdc++6 (= 16.2.0-4), libsvtav1enc4 (= 4.2.0+dfsg-3), libsystemd-shared (= 262.1-1), libsystemd0 (= 262.1-1), libsz2 (= 1.1.7-1), libtasn1-6 (= 4.21.0-2+b1), libtasn1-6-dev (= 4.21.0-2+b1), libtcl8.6 (= 8.6.18+dfsg-1), libthai-data (= 0.1.30-3), libthai0 (= 0.1.30-3), libtiff-dev (= 4.7.2-1), libtiff6 (= 4.7.2-1), libtiffxx6 (= 4.7.2-1), libtinfo6 (= 6.6+20260608-2), libtk8.6 (= 8.6.18-1), libtool (= 2.6.2-3), libtsan2 (= 16.2.0-4), libubsan1 (= 16.2.0-4), libuchardet0 (= 0.0.8-2+b2), libucx0 (= 1.23.0~rc1-1), libudev1 (= 262.1-1), libunbound8 (= 1.26.2-1), libunistring-dev (= 1.4.2-1), libunistring5 (= 1.4.2-1), libuuid1 (= 2.42.4-1), libvorbis0a (= 1.3.7-3+b2), libvorbisenc2 (= 1.3.7-3+b2), libvulkan1 (= 1.4.363.0-1), libwacom-common (= 2.20.0-1), libwacom9 (= 2.20.0-1), libwayland-client0 (= 1.26.0-1), libwayland-cursor0 (= 1.26.0-1), libwayland-egl1 (= 1.26.0-1), libwebp-dev (= 1.6.0-0.1), libwebp7 (= 1.6.0-0.1), libwebpdecoder3 (= 1.6.0-0.1), libwebpdemux2 (= 1.6.0-0.1), libwebpmux3 (= 1.6.0-0.1), libwxbase3.2-1t64 (= 3.2.11+dfsg1-2), libwxgtk-gl3.2-1t64 (= 3.2.11+dfsg1-2), libwxgtk3.2-1t64 (= 3.2.11+dfsg1-2), libx11-6 (= 2:1.8.14-1), libx11-data (= 2:1.8.14-1), libx11-dev (= 2:1.8.14-1), libx11-xcb1 (= 2:1.8.14-1), libxau-dev (= 1:1.0.11-1+b2), libxau6 (= 1:1.0.11-1+b2), libxcb-dri3-0 (= 1.17.0-2+b2), libxcb-glx0 (= 1.17.0-2+b2), libxcb-icccm4 (= 0.4.2-1+b2), libxcb-image0 (= 0.4.0-2+b3), libxcb-keysyms1 (= 0.4.1-1+b2), libxcb-present0 (= 1.17.0-2+b2), libxcb-randr0 (= 1.17.0-2+b2), libxcb-render-util0 (= 0.3.10-1+b2), libxcb-render0 (= 1.17.0-2+b2), libxcb-shape0 (= 1.17.0-2+b2), libxcb-shm0 (= 1.17.0-2+b2), libxcb-sync1 (= 1.17.0-2+b2), libxcb-util1 (= 0.4.1-1+b2), libxcb-xfixes0 (= 1.17.0-2+b2), libxcb-xinerama0 (= 1.17.0-2+b2), libxcb-xinput0 (= 1.17.0-2+b2), libxcb-xkb1 (= 1.17.0-2+b2), libxcb1 (= 1.17.0-2+b2), libxcb1-dev (= 1.17.0-2+b2), libxcomposite1 (= 1:0.4.6-1+b2), libxcursor1 (= 1:1.2.3-1+b2), libxdamage1 (= 1:1.1.7-1+b1), libxdmcp-dev (= 1:1.1.5-2+b1), libxdmcp6 (= 1:1.1.5-2+b1), libxext6 (= 2:1.3.4-1+b4), libxfixes3 (= 1:6.0.0-2+b5), libxft2 (= 2.3.6-1+b5), libxi6 (= 2:1.8.4-1), libxinerama1 (= 2:1.1.4-3+b5), libxkbcommon-x11-0 (= 1.13.1-1), libxkbcommon0 (= 1.13.1-1), libxml2-16 (= 2.15.4+dfsg-1+b1), libxnvctrl0 (= 535.171.04-1+b3), libxrandr2 (= 2:1.5.4-1+b4), libxrender1 (= 1:0.9.13-1), libxres1 (= 2:1.2.1-2), libxshmfence1 (= 1.3.3-1+b2), libxslt1.1 (= 1.1.45-0.1), libxss1 (= 1:1.2.3-1+b4), libxtst6 (= 2:1.2.6-1), libxxf86vm1 (= 1:1.1.4-2+b1), libxxhash-dev (= 0.8.3-2+b2), libxxhash0 (= 0.8.3-2+b2), libyaml-0-2 (= 0.2.5-2+b1), libyuv0 (= 0.0.1974.20261008-1), libz3-4 (= 4.13.3-1.1), libzopfli1 (= 1.0.3-3+b1), libzstd-dev (= 1.5.7+dfsg-4), libzstd1 (= 1.5.7+dfsg-4), linux-libc-dev (= 7.2.12-1), m4 (= 1.4.21-1), make (= 4.4.1-3+b1), man-db (= 2.13.1-1+b1), mawk (= 1.3.4.20260302-2), media-types (= 14.0.0), mesa-libgallium (= 26.2.6-1), ncurses-base (= 6.6+20260608-2), ncurses-bin (= 6.6+20260608-2), netbase (= 6.6), nettle-dev (= 3.10.2-1+b1), ocl-icd-libopencl1 (= 2.3.4-1+b1), openssl (= 3.6.5-1), openssl-provider-legacy (= 3.6.5-1), patch (= 2.8.1-1), pci.ids (= 0.0~2026.10.24-1), perl (= 5.42.3-1), perl-base (= 5.42.3-1), perl-modules-5.42 (= 5.42.3-1), pkgconf (= 2.5.1-4), pkgconf-bin (= 2.5.1-4), po-debconf (= 1.0.22), procps (= 2:4.0.7-1), pybind11-dev (= 3.1.0-2), pybuild-plugin-pyproject (= 7.20261030), pymol-data (= 3.1.0+dfsg-1), python-matplotlib-data (= 3.10.9+dfsg1-2), python3 (= 3.14.8-1), python3-all (= 3.14.8-1), python3-all-dev (= 3.14.8-1), python3-attr (= 26.1.0-1), python3-biopython (= 1.88+dfsg-2+b2), python3-brotli (= 1.2.0-4.1), python3-build (= 1.5.1-1), python3-cairo (= 1.29.1-1+b1), python3-certifi (= 2026.10.23+ds-1), python3-chardet (= 5.2.0+dfsg-2), python3-charset-normalizer (= 3.4.7-2+b3), python3-contourpy (= 1.3.3-3), python3-cycler (= 0.12.1-3), python3-dateutil (= 3.0.0-2), python3-decorator (= 5.3.1-1), python3-dev (= 3.14.8-1), python3-editables (= 0.6-1), python3-flexcache (= 0.3-3), python3-flexparser (= 0.4-2), python3-fonttools (= 4.65.0-1+b1), python3-freetype (= 2.5.1-3), python3-h5py (= 3.16.0-8), python3-h5py-serial (= 3.16.0-8), python3-hatchling (= 1.32.4-1), python3-hdf5plugin (= 7.1.0-2), python3-idna (= 3.20-1), python3-iniconfig (= 2.1.0-2), python3-installer (= 1.1.0+dfsg1-1), python3-kiwisolver (= 1.5.1-1+b1), python3-legacy-cgi (= 2.6.4-3), python3-lxml (= 6.1.3-1.1), python3-lz4 (= 4.4.5+dfsg-1+b3), python3-matplotlib (= 3.10.9+dfsg1-2+b1), python3-minimal (= 3.14.8-1), python3-mpmath (= 1.4.1-4), python3-mrcfile (= 1.5.4-4), python3-msgpack (= 1.2.1-3), python3-natsort (= 8.4.0-2), python3-numpy (= 1:2.4.6+ds-5+b1), python3-numpy-dev (= 1:2.4.6+ds-5+b1), python3-nxmx (= 0.0.7-1), python3-opengl (= 3.1.10+dfsg-1), python3-ordered-set (= 4.1.0-1), python3-packaging (= 26.2-3), python3-pathspec (= 1.1.1-3), python3-pil (= 13.0.0-1+b1), python3-pil.imagetk (= 13.0.0-1+b1), python3-pint (= 0.26.2-1), python3-pip (= 26.2.2+dfsg-1), python3-platformdirs (= 4.11.9-1), python3-pluggy (= 1.6.0-2), python3-procrunner (= 2.3.3-2), python3-psutil (= 7.2.2-3), python3-pycbf (= 0.9.7+dfsg1-5.1+b4), python3-pygments (= 2.20.0+dfsg-2), python3-pymol (= 3.1.0+dfsg-1+b3), python3-pyparsing (= 3.3.3-2), python3-pyproject-hooks (= 1.3.3-1), python3-pyqt5 (= 5.15.11+dfsg-7), python3-pyqt5.qtopengl (= 5.15.11+dfsg-7), python3-pyqt5.sip (= 12.19.0-1+b2), python3-pytest (= 9.1.1-1), python3-reportlab (= 5.1.0-1), python3-requests (= 2.34.2-1), python3-rlpycairo (= 0.3.0-4), python3-scipy (= 1.17.1-5+b2), python3-setuptools (= 84.2.0-1), python3-six (= 1.17.0-3), python3-sympy (= 1.14.0-6), python3-tk (= 3.14.8-1), python3-tomlkit (= 0.13.3-3), python3-tqdm (= 4.70.1-1), python3-trove-classifiers (= 2026.9.21.13-1), python3-typing-extensions (= 4.16.0-5), python3-ufolib2 (= 0.18.1+dfsg1-2), python3-uharfbuzz (= 0.53.3-1), python3-urllib3 (= 2.8.0-2), python3-wheel (= 0.47.0-2), python3-wxgtk4.0 (= 4.2.5+dfsg-3+b1), python3-yaml (= 6.0.3-1+b3), python3-zopfli (= 0.4.3-2), python3.14 (= 3.14.10-1), python3.14-dev (= 3.14.10-1), python3.14-minimal (= 3.14.10-1), python3.14-tk (= 3.14.10-1), python3.15 (= 3.15.2-1), python3.15-dev (= 3.15.2-1), python3.15-minimal (= 3.15.2-1), python3.15-tk (= 3.15.2-1), readline-common (= 8.3-4), rsync (= 3.5.1+ds1-2), scons (= 4.10.1+dfsg-2), sed (= 4.9-3), sensible-utils (= 0.0.26), sfftw-dev (= 2.1.5-8), sfftw2 (= 2.1.5-8), sgml-base (= 1.31+nmu1), shared-mime-info (= 2.4-5+b2), sphinx-rtd-theme-common (= 3.1.0+dfsg-4), systemd (= 262.1-1), systemd-sysv (= 262.1-1), sysvinit-utils (= 3.18-1), tar (= 1.35+dfsg-7), tzdata (= 2026f-1), unicode-data (= 17.0.0-2), user-session-migration (= 0.5.2), util-linux (= 2.42.4-1), w3c-sgml-lib (= 1.3-3), x11-common (= 1:7.7+26), x11proto-dev (= 2025.1-1), xfonts-encodings (= 1:1.0.4-2.2), xfonts-utils (= 1:7.7+7+b1), xkb-data (= 2.48-1), xml-core (= 0.21), xorg-sgml-doctools (= 1:1.12.1-1), xtrans-dev (= 1.6.0-1), xz-utils (= 5.8.4-1), zlib1g (= 1:1.3.dfsg+really1.3.2-4), zlib1g-dev (= 1:1.3.dfsg+really1.3.2-4) Environment: DEB_BUILD_OPTIONS="parallel=8" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1791228811" +------------------------------------------------------------------------------+ | Package contents Fri, 06 Nov 2026 06:32:23 +0000 | +------------------------------------------------------------------------------+ libcctbx-dev_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb ---------------------------------------------------- new Debian package, version 2.0. size 1175448 bytes: control archive=23608 bytes. 2992 bytes, 55 lines control 64544 bytes, 837 lines md5sums Package: libcctbx-dev Source: cctbx (2026.9+ds2+~3.30.1+ds1-1) Version: 2026.9+ds2+~3.30.1+ds1-1+b2 Architecture: loong64 Maintainer: Debian Science Maintainers Installed-Size: 8696 Depends: libann-cctbx-dev, libboost-python-dev, libccp4-dev, libcctbx0 (= 2026.9+ds2+~3.30.1+ds1-1+b2) Section: libdevel Priority: optional Homepage: https://github.com/cctbx/cctbx_project Description: Computational Crystallography Toolbox - headers Computational Crystallography Toolbox contains following modules: - annlib_adaptbx: - boost_adaptbx: wrappers for Boost functionality in CCTBX - cbflib_adaptbx: - ccp4io_adaptbx: - cctbx: Libraries for general crystallographic applications, useful for both small-molecule and macro-molecular crystallography. - cma_es: - crys3d: Modules for the display of molecules, electron density, and reciprocal space data. - dxtbx: The Diffraction Image Toolbox, a library for handling X-ray detector data of arbitrary complexity from a variety of standard formats. - fable: Fortran EMulation library for porting Fortran77 to C++. - gltbx: Python bindings for OpenGL - iotbx: Working with common crystallographic file formats. - libtbx: The build system common to all other modules. This includes a very thin wrapper around the SCons software construction tool. It also contains many useful frameworks and utilities to simplify application development, including tools for regression testing, parallelization across multiprocessor systems and managed clusters, and a flexible, modular configuration syntax called PHIL (Python Hierarchial Interface Language) used throughout the CCTBX. - mmtbx: Functionality specific to macromolecular crystallography. This includes all of the machinery required for setup of geometry restraints, bulk solvent correction and scaling, analysis of macromolecular diffraction data, calculation of weighted map coefficients, and most of the methods implemented in phenix.refine. The majority of infrastructure for the MolProbity validation server (and Phenix equivalent) is also located here. - omptbx: OpenMP interface. - rstbx: A reciprocal space toolbox to autoindex small molecule Bragg diffraction, given the reciprocal space vectors. - scitbx: General scientific calculations. his includes a family of high-level C++ array types, a fast Fourier transform library, and a C++ port of the popular L-BFGS quasi-Newton minimizer. - smtbx: Small-Molecule crystallography. - spotfinder: - tbxx: - wxtbx: wxPython controls used in the Phenix GUI and various utilities . This package provide everything needed to link against the cctbx libraries. drwxr-xr-x root/root 0 2026-10-05 19:33 ./ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/annlib_adaptbx/ -rw-r--r-- root/root 2068 2026-10-05 19:33 ./usr/include/annlib_adaptbx/ann_adaptor.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/boost_adaptbx/ -rw-r--r-- root/root 933 2026-09-30 14:46 ./usr/include/boost_adaptbx/boost_range_python.hpp -rw-r--r-- root/root 930 2026-09-30 14:46 ./usr/include/boost_adaptbx/convertible.h -rw-r--r-- root/root 3412 2026-09-30 14:46 ./usr/include/boost_adaptbx/exporting.hpp -rw-r--r-- root/root 3770 2026-09-30 14:46 ./usr/include/boost_adaptbx/floating_point_exceptions.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/boost_adaptbx/graph/ -rw-r--r-- root/root 1588 2026-09-30 14:46 ./usr/include/boost_adaptbx/graph/graph_export_adaptor.hpp -rw-r--r-- root/root 2301 2026-09-30 14:46 ./usr/include/boost_adaptbx/graph/graph_type.hpp -rw-r--r-- root/root 9259 2026-09-30 14:46 ./usr/include/boost_adaptbx/graph/maximum_clique_greedy.hpp -rw-r--r-- root/root 13452 2026-09-30 14:46 ./usr/include/boost_adaptbx/graph/maximum_clique_rascal.hpp -rw-r--r-- root/root 7254 2026-09-30 14:46 ./usr/include/boost_adaptbx/graph/vertex_map.hpp -rw-r--r-- root/root 2046 2026-09-30 14:46 ./usr/include/boost_adaptbx/hash.h -rw-r--r-- root/root 1442 2026-09-30 14:46 ./usr/include/boost_adaptbx/iterator_range.h -rw-r--r-- root/root 2380 2026-09-30 14:46 ./usr/include/boost_adaptbx/optional_conversions.h -rw-r--r-- root/root 160 2026-09-30 14:46 ./usr/include/boost_adaptbx/precompiled.h -rw-r--r-- root/root 15836 2026-09-30 14:46 ./usr/include/boost_adaptbx/python_streambuf.h -rw-r--r-- root/root 2273 2026-09-30 14:46 ./usr/include/boost_adaptbx/std_pair_conversion.h -rw-r--r-- root/root 742 2026-09-30 14:46 ./usr/include/boost_adaptbx/std_pair_fwd.h -rw-r--r-- root/root 1177 2026-09-30 14:46 ./usr/include/boost_adaptbx/swig_arg.hpp drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/boost_adaptbx/tests/ -rw-r--r-- root/root 1847 2026-09-30 14:46 ./usr/include/boost_adaptbx/tests/tst_optional_copy.h -rw-r--r-- root/root 1499 2026-09-30 14:46 ./usr/include/boost_adaptbx/tuple_conversion.h -rw-r--r-- root/root 380 2026-10-05 19:33 ./usr/include/boost_adaptbx/type_id_eq.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/cbflib_adaptbx/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/cbflib_adaptbx/detectors/ -rw-r--r-- root/root 858 2026-09-30 14:46 ./usr/include/cbflib_adaptbx/detectors/basic.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/cbflib_adaptbx/detectors/boost_python/ -rw-r--r-- root/root 8255 2026-10-05 19:33 ./usr/include/cbflib_adaptbx/detectors/boost_python/cbf_binary_adaptor.h -rw-r--r-- root/root 1764 2026-09-30 14:46 ./usr/include/cbflib_adaptbx/detectors/boost_python/general_cbf_write.h -rw-r--r-- root/root 305 2026-09-30 14:46 ./usr/include/cbflib_adaptbx/detectors/buffer_based_service.h -rw-r--r-- root/root 6894 2026-10-05 19:33 ./usr/include/cbflib_adaptbx/detectors/cbf_adaptor.h -rw-r--r-- root/root 850 2026-10-05 19:33 ./usr/include/cbflib_adaptbx/detectors/cbf_byte_offset_optimized.h -rw-r--r-- root/root 2701 2026-10-05 19:33 ./usr/include/cbflib_adaptbx/detectors/mar_adaptor.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/ -rw-r--r-- root/root 2043 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/ccp4_ccplib_fem.hpp -rw-r--r-- root/root 3515 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/ccp4_diskio_fem.hpp -rw-r--r-- root/root 2389 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/ccp4_fftlib_fem.hpp -rw-r--r-- root/root 535 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/ccp4_library_fem.hpp -rw-r--r-- root/root 1896 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/ccp4_maplib_fem.hpp -rw-r--r-- root/root 8765 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/ccp4_mtzlib_fem.hpp -rw-r--r-- root/root 892 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/ccp4_other_fem.hpp -rw-r--r-- root/root 1656 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/ccp4_parser_f.h -rw-r--r-- root/root 1398 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/ccp4_parser_fem.hpp -rw-r--r-- root/root 4502 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/ccp4_symlib_fem.hpp -rw-r--r-- root/root 17883 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/cmaplib_f.h -rw-r--r-- root/root 23922 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/cmtzlib_f.h -rw-r--r-- root/root 15631 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/csymlib_f.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/dev/ -rw-r--r-- root/root 703 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/dev/fftlib.hpp -rw-r--r-- root/root 611 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/library_f.h -rw-r--r-- root/root 345 2026-10-05 19:33 ./usr/include/ccp4io_adaptbx/printf_wrappers.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/cctbx/ drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/cctbx/adp_restraints/ -rw-r--r-- root/root 16795 2026-09-30 14:46 ./usr/include/cctbx/adp_restraints/adp_restraints.h -rw-r--r-- root/root 12123 2026-09-30 14:46 ./usr/include/cctbx/adp_restraints/adp_similarity.h -rw-r--r-- root/root 5376 2026-09-30 14:46 ./usr/include/cctbx/adp_restraints/aniso_restraints.h -rw-r--r-- root/root 2381 2026-09-30 14:46 ./usr/include/cctbx/adp_restraints/fixed_u_eq_adp.h -rw-r--r-- root/root 2117 2026-09-30 14:46 ./usr/include/cctbx/adp_restraints/isotropic_adp.h -rw-r--r-- root/root 6375 2026-09-30 14:46 ./usr/include/cctbx/adp_restraints/rigid_bond.h -rw-r--r-- root/root 8016 2026-09-30 14:46 ./usr/include/cctbx/adp_restraints/rigu.h -rw-r--r-- root/root 28407 2026-09-30 14:46 ./usr/include/cctbx/adptbx.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/cctbx/adptbx/ -rw-r--r-- root/root 9714 2026-09-30 14:46 ./usr/include/cctbx/adptbx/hirshfeld.h -rw-r--r-- root/root 1779 2026-09-30 14:46 ./usr/include/cctbx/anharmonic.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/cctbx/boost_python/ -rw-r--r-- root/root 660 2026-10-05 19:33 ./usr/include/cctbx/boost_python/flex_fwd.h -rw-r--r-- root/root 5808 2026-09-30 14:46 ./usr/include/cctbx/coordinates.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/cctbx/covariance/ -rw-r--r-- root/root 4603 2026-09-30 14:46 ./usr/include/cctbx/covariance/covariance.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/cctbx/crystal/ -rw-r--r-- root/root 5512 2026-09-30 14:46 ./usr/include/cctbx/crystal/asu_clusters.h -rw-r--r-- root/root 12174 2026-09-30 14:46 ./usr/include/cctbx/crystal/close_packing.h -rw-r--r-- root/root 16580 2026-09-30 14:46 ./usr/include/cctbx/crystal/coordination_sequences.h -rw-r--r-- root/root 35515 2026-09-30 14:46 ./usr/include/cctbx/crystal/direct_space_asu.h -rw-r--r-- root/root 9145 2026-09-30 14:46 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./usr/include/cctbx/dmtbx/triplet_generator.h -rw-r--r-- root/root 4272 2026-09-30 14:46 ./usr/include/cctbx/dmtbx/triplet_phase_relation.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/cctbx/eltbx/ -rw-r--r-- root/root 6018 2026-09-30 14:46 ./usr/include/cctbx/eltbx/attenuation_coefficient.h -rw-r--r-- root/root 1863 2026-09-30 14:46 ./usr/include/cctbx/eltbx/basic.h -rw-r--r-- root/root 2606 2026-09-30 14:46 ./usr/include/cctbx/eltbx/chemical_elements.h -rw-r--r-- root/root 2122 2026-10-05 19:33 ./usr/include/cctbx/eltbx/covalent_radii.h -rw-r--r-- root/root 2870 2026-09-30 14:46 ./usr/include/cctbx/eltbx/electron_scattering.h -rw-r--r-- root/root 2828 2026-09-30 14:46 ./usr/include/cctbx/eltbx/fp_fdp.h -rw-r--r-- root/root 3979 2026-09-30 14:46 ./usr/include/cctbx/eltbx/henke.h -rw-r--r-- root/root 3107 2026-09-30 14:46 ./usr/include/cctbx/eltbx/icsd_radii.h -rw-r--r-- root/root 3514 2026-09-30 14:46 ./usr/include/cctbx/eltbx/neutron.h -rw-r--r-- root/root 4155 2026-09-30 14:46 ./usr/include/cctbx/eltbx/sasaki.h -rw-r--r-- root/root 2165 2026-09-30 14:46 ./usr/include/cctbx/eltbx/tiny_pse.h -rw-r--r-- root/root 2151 2026-09-30 14:46 ./usr/include/cctbx/eltbx/wavelengths.h -rw-r--r-- root/root 11495 2026-09-30 14:46 ./usr/include/cctbx/eltbx/xray_scattering.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/cctbx/eltbx/xray_scattering/ -rw-r--r-- root/root 2284 2026-09-30 14:46 ./usr/include/cctbx/eltbx/xray_scattering/form_factor.h -rw-r--r-- root/root 1664 2026-09-30 14:46 ./usr/include/cctbx/eltbx/xray_scattering/gaussian.h -rw-r--r-- root/root 1724 2026-09-30 14:46 ./usr/include/cctbx/eltbx/xray_scattering/n_gaussian.h -rw-r--r-- root/root 579 2026-09-30 14:46 ./usr/include/cctbx/eltbx/xray_scattering/n_gaussian_raw.h -rw-r--r-- root/root 2301 2026-09-30 14:46 ./usr/include/cctbx/error.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/cctbx/examples/ drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/cctbx/examples/merging/ -rw-r--r-- root/root 8862 2026-09-30 14:46 ./usr/include/cctbx/examples/merging/postrefine_base.h -rw-r--r-- root/root 8896 2026-09-30 14:46 ./usr/include/cctbx/examples/merging/xscale_prototype_core.h -rw-r--r-- root/root 6945 2026-09-30 14:46 ./usr/include/cctbx/french_wilson.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/cctbx/geometry/ -rw-r--r-- root/root 17148 2026-09-30 14:46 ./usr/include/cctbx/geometry/geometry.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/cctbx/geometry_restraints/ -rw-r--r-- root/root 17843 2026-09-30 14:46 ./usr/include/cctbx/geometry_restraints/angle.h -rw-r--r-- root/root 3045 2026-09-30 14:46 ./usr/include/cctbx/geometry_restraints/asu_cache.h -rw-r--r-- root/root 28600 2026-09-30 14:46 ./usr/include/cctbx/geometry_restraints/bond.h -rw-r--r-- root/root 1563 2026-09-30 14:46 ./usr/include/cctbx/geometry_restraints/bond_misc.h -rw-r--r-- root/root 14126 2026-09-30 14:46 ./usr/include/cctbx/geometry_restraints/bond_similarity.h -rw-r--r-- root/root 6213 2026-09-30 14:46 ./usr/include/cctbx/geometry_restraints/bond_sorted.h -rw-r--r-- root/root 10846 2026-09-30 14:46 ./usr/include/cctbx/geometry_restraints/chirality.h -rw-r--r-- root/root 22165 2026-09-30 14:46 ./usr/include/cctbx/geometry_restraints/dihedral.h -rw-r--r-- root/root 8931 2026-09-30 14:46 ./usr/include/cctbx/geometry_restraints/motif.h -rw-r--r-- root/root 158 2026-09-30 14:46 ./usr/include/cctbx/geometry_restraints/namespace.h -rw-r--r-- root/root 29326 2026-09-30 14:46 ./usr/include/cctbx/geometry_restraints/nonbonded.h -rw-r--r-- root/root 7478 2026-09-30 14:46 ./usr/include/cctbx/geometry_restraints/nonbonded_sorted.h -rw-r--r-- root/root 33629 2026-09-30 14:46 ./usr/include/cctbx/geometry_restraints/parallelity.h -rw-r--r-- root/root 15757 2026-09-30 14:46 ./usr/include/cctbx/geometry_restraints/planarity.h -rw-r--r-- root/root 6735 2026-09-30 14:46 ./usr/include/cctbx/geometry_restraints/proxy_select.h -rw-r--r-- root/root 1086 2026-09-30 14:46 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root/root 2237 2026-09-30 14:46 ./usr/include/cctbx/maptbx/standard_deviations_around_sites.hpp -rw-r--r-- root/root 7885 2026-09-30 14:46 ./usr/include/cctbx/maptbx/statistics.h -rw-r--r-- root/root 15138 2026-09-30 14:46 ./usr/include/cctbx/maptbx/structure_factors.h -rw-r--r-- root/root 21027 2026-09-30 14:46 ./usr/include/cctbx/maptbx/target_and_gradients.h -rw-r--r-- root/root 46141 2026-09-30 14:46 ./usr/include/cctbx/maptbx/utils.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/cctbx/masks/ -rw-r--r-- root/root 14960 2026-09-30 14:46 ./usr/include/cctbx/masks/around_atoms.h -rw-r--r-- root/root 6868 2026-09-30 14:46 ./usr/include/cctbx/masks/flood_fill.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/cctbx/math/ -rw-r--r-- root/root 1087 2026-09-30 14:46 ./usr/include/cctbx/math/array_utils.h -rw-r--r-- root/root 5836 2026-09-30 14:46 ./usr/include/cctbx/math/cos_sin_table.h -rw-r--r-- root/root 1439 2026-09-30 14:46 ./usr/include/cctbx/math/loop_n_from_m.h -rw-r--r-- root/root 579 2026-09-30 14:46 ./usr/include/cctbx/math/mod.h -rw-r--r-- root/root 3845 2026-09-30 14:46 ./usr/include/cctbx/miller.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/cctbx/miller/ -rw-r--r-- root/root 2269 2026-09-30 14:46 ./usr/include/cctbx/miller/amplitude_normalisation.h -rw-r--r-- root/root 9005 2026-09-30 14:46 ./usr/include/cctbx/miller/asu.h -rw-r--r-- root/root 6314 2026-09-30 14:46 ./usr/include/cctbx/miller/bins.h -rw-r--r-- root/root 1917 2026-09-30 14:46 ./usr/include/cctbx/miller/change_basis.h -rw-r--r-- root/root 7029 2026-09-30 14:46 ./usr/include/cctbx/miller/expand_to_p1.h -rw-r--r-- root/root 4463 2026-09-30 14:46 ./usr/include/cctbx/miller/f_calc_map.h -rw-r--r-- root/root 3823 2026-09-30 14:46 ./usr/include/cctbx/miller/index_generator.h -rw-r--r-- root/root 2578 2026-09-30 14:46 ./usr/include/cctbx/miller/index_span.h -rw-r--r-- root/root 12427 2026-09-30 14:46 ./usr/include/cctbx/miller/lookup_utils.h -rw-r--r-- root/root 2185 2026-09-30 14:46 ./usr/include/cctbx/miller/match.h -rw-r--r-- root/root 3514 2026-09-30 14:46 ./usr/include/cctbx/miller/match_bijvoet_mates.h -rw-r--r-- root/root 4089 2026-09-30 14:46 ./usr/include/cctbx/miller/match_indices.h -rw-r--r-- root/root 1351 2026-09-30 14:46 ./usr/include/cctbx/miller/match_multi_indices.h -rw-r--r-- root/root 1278 2026-09-30 14:46 ./usr/include/cctbx/miller/math.h -rw-r--r-- root/root 22970 2026-09-30 14:46 ./usr/include/cctbx/miller/merge_equivalents.h -rw-r--r-- root/root 8142 2026-09-30 14:46 ./usr/include/cctbx/miller/phase_integrator.h -rw-r--r-- root/root 2617 2026-09-30 14:46 ./usr/include/cctbx/miller/phase_transfer.h -rw-r--r-- root/root 1552 2026-09-30 14:46 ./usr/include/cctbx/miller/randomize_amplitude_and_phase.h -rw-r--r-- root/root 1216 2026-09-30 14:46 ./usr/include/cctbx/miller/slices.h -rw-r--r-- root/root 11625 2026-09-30 14:46 ./usr/include/cctbx/miller/sym_equiv.h -rw-r--r-- root/root 818 2026-09-30 14:46 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2026-09-30 14:46 ./usr/include/cctbx/sgtbx/miller_ops.h -rw-r--r-- root/root 1388 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/operator_from_axis_direction.h -rw-r--r-- root/root 2961 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/parse_string.h -rw-r--r-- root/root 5057 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/phase_info.h -rw-r--r-- root/root 3992 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/reciprocal_space_asu.h -rw-r--r-- root/root 3959 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/reciprocal_space_reference_asu.h -rw-r--r-- root/root 2553 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/reference_settings.h -rw-r--r-- root/root 11934 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/rot_mx.h -rw-r--r-- root/root 338 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/rot_mx_hash.h -rw-r--r-- root/root 1423 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/rot_mx_info.h -rw-r--r-- root/root 1180 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/rotation_matrices.h -rw-r--r-- root/root 684 2026-09-30 14:46 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root/root 10467 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/space_group_type.h -rw-r--r-- root/root 20819 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/sym_equiv_sites.h -rw-r--r-- root/root 13091 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/symbols.h -rw-r--r-- root/root 14006 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/sys_abs_equiv.h -rw-r--r-- root/root 16317 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/tensor_rank_2.h -rw-r--r-- root/root 7643 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/tensors.h -rw-r--r-- root/root 1629 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/tr_group.h -rw-r--r-- root/root 391 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/tr_group_hash.h -rw-r--r-- root/root 6560 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/tr_vec.h -rw-r--r-- root/root 370 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/tr_vec_hash.h -rw-r--r-- root/root 458 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/utils.h -rw-r--r-- root/root 10050 2026-09-30 14:46 ./usr/include/cctbx/sgtbx/wyckoff.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/cctbx/symmetry_search/ -rw-r--r-- root/root 6106 2026-09-30 14:46 ./usr/include/cctbx/symmetry_search/translation_refinement.h -rw-r--r-- root/root 492 2026-09-30 14:46 ./usr/include/cctbx/tagged_value.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/cctbx/translation_search/ -rw-r--r-- root/root 2224 2026-09-30 14:46 ./usr/include/cctbx/translation_search/fast_nv1995.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/cctbx/translation_search/fast_nv1995/ -rw-r--r-- root/root 2516 2026-09-30 14:46 ./usr/include/cctbx/translation_search/fast_nv1995/combinations.h -rw-r--r-- root/root 1521 2026-09-30 14:46 ./usr/include/cctbx/translation_search/fast_nv1995/intermediates.h -rw-r--r-- root/root 8723 2026-09-30 14:46 ./usr/include/cctbx/translation_search/fast_nv1995/summations.h -rw-r--r-- root/root 4175 2026-09-30 14:46 ./usr/include/cctbx/translation_search/fast_terms.h -rw-r--r-- root/root 138 2026-09-30 14:46 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root/root 2405 2026-09-30 14:46 ./usr/include/cma_es/cma/cmaes_interface.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/dxtbx/ drwxr-xr-x root/root 0 2026-08-03 12:09 ./usr/include/dxtbx/array_family/ -rw-r--r-- root/root 15026 2026-08-03 12:09 ./usr/include/dxtbx/array_family/flex_table.h -rw-r--r-- root/root 40157 2026-08-03 12:09 ./usr/include/dxtbx/array_family/flex_table_suite.h -rw-r--r-- root/root 284 2026-08-03 12:09 ./usr/include/dxtbx/array_family/ref_pickle_double_buffered.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/dxtbx/boost_python/ -rw-r--r-- root/root 653 2026-08-03 12:09 ./usr/include/dxtbx/boost_python/compression.h -rw-r--r-- root/root 2261 2026-08-03 12:09 ./usr/include/dxtbx/error.h drwxr-xr-x root/root 0 2026-08-03 12:09 ./usr/include/dxtbx/format/ drwxr-xr-x root/root 0 2026-08-03 12:09 ./usr/include/dxtbx/format/boost_python/ -rw-r--r-- root/root 202 2026-08-03 12:09 ./usr/include/dxtbx/format/boost_python/cbf_read_buffer.h -rw-r--r-- 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14:46 ./usr/include/fem/zero.hpp drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/gltbx/ -rw-r--r-- root/root 1253 2026-09-30 14:46 ./usr/include/gltbx/error.h -rw-r--r-- root/root 2284 2026-09-30 14:46 ./usr/include/gltbx/error_utils.h -rw-r--r-- root/root 5200 2026-09-30 14:46 ./usr/include/gltbx/fonts_ucs.h -rw-r--r-- root/root 570164 2026-09-30 14:46 ./usr/include/gltbx/glext.h -rw-r--r-- root/root 574 2026-09-30 14:46 ./usr/include/gltbx/include_opengl.h -rw-r--r-- root/root 7498 2026-09-30 14:46 ./usr/include/gltbx/pointer_args_bpl.h -rw-r--r-- root/root 10009 2026-09-30 14:46 ./usr/include/gltbx/quadrics.h -rw-r--r-- root/root 655 2026-09-30 14:46 ./usr/include/gltbx/special_wrapper_support.h -rw-r--r-- root/root 317 2026-09-30 14:46 ./usr/include/gltbx/util.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/iotbx/ drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/iotbx/detectors/ -rw-r--r-- root/root 963 2026-09-30 14:46 ./usr/include/iotbx/detectors/bruker.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/iotbx/detectors/context/ -rw-r--r-- root/root 2717 2026-09-30 14:46 ./usr/include/iotbx/detectors/context/spot_xy_convention.h -rw-r--r-- root/root 42787 2026-09-30 14:46 ./usr/include/iotbx/detectors/display.h -rw-r--r-- root/root 1791 2026-09-30 14:46 ./usr/include/iotbx/detectors/image_divider.h -rw-r--r-- root/root 9644 2026-09-30 14:46 ./usr/include/iotbx/detectors/scanbox.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/iotbx/dsn6/ -rw-r--r-- root/root 4813 2026-09-30 14:46 ./usr/include/iotbx/dsn6/dsn6.hpp -rw-r--r-- root/root 2301 2026-09-30 14:46 ./usr/include/iotbx/error.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/iotbx/mtz/ -rw-r--r-- root/root 8100 2026-09-30 14:46 ./usr/include/iotbx/mtz/batch.h -rw-r--r-- root/root 6803 2026-09-30 14:46 ./usr/include/iotbx/mtz/column.h -rw-r--r-- root/root 2630 2026-09-30 14:46 ./usr/include/iotbx/mtz/crystal.h -rw-r--r-- root/root 2685 2026-09-30 14:46 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root/root 7848 2026-09-30 14:46 ./usr/include/mmtbx/probe/SpatialQuery.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/mmtbx/reduce/ -rw-r--r-- root/root 4600 2026-09-30 14:46 ./usr/include/mmtbx/reduce/InteractionGraph.h -rw-r--r-- root/root 16833 2026-09-30 14:46 ./usr/include/mmtbx/reduce/Optimizers.h -rw-r--r-- root/root 5240 2026-09-30 14:46 ./usr/include/mmtbx/reduce/PositionReturn.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/mmtbx/rotamer/ -rw-r--r-- root/root 10098 2026-09-30 14:46 ./usr/include/mmtbx/rotamer/fit.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/mmtbx/rsr/ -rw-r--r-- root/root 13285 2026-09-30 14:46 ./usr/include/mmtbx/rsr/rsr.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/mmtbx/scaling/ -rw-r--r-- root/root 29126 2026-09-30 14:46 ./usr/include/mmtbx/scaling/absolute_scaling.h -rw-r--r-- root/root 25744 2026-09-30 14:46 ./usr/include/mmtbx/scaling/outlier.h -rw-r--r-- root/root 57302 2026-09-30 14:46 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root/root 2295 2026-09-30 14:46 ./usr/include/scitbx/math/least_squares_plane.h -rw-r--r-- root/root 2753 2026-09-30 14:46 ./usr/include/scitbx/math/linear_correlation.h -rw-r--r-- root/root 1985 2026-09-30 14:46 ./usr/include/scitbx/math/linear_interpolation.h -rw-r--r-- root/root 5859 2026-09-30 14:46 ./usr/include/scitbx/math/linear_regression.h -rw-r--r-- root/root 3561 2026-09-30 14:46 ./usr/include/scitbx/math/mean_and_variance.h -rw-r--r-- root/root 5250 2026-09-30 14:46 ./usr/include/scitbx/math/minimum_covering_sphere.h -rw-r--r-- root/root 771 2026-09-30 14:46 ./usr/include/scitbx/math/modulo.h -rw-r--r-- root/root 120 2026-09-30 14:46 ./usr/include/scitbx/math/namespace.h -rw-r--r-- root/root 702 2026-09-30 14:46 ./usr/include/scitbx/math/numeric_limits.h -rw-r--r-- root/root 2209 2026-09-30 14:46 ./usr/include/scitbx/math/orthonormal_basis.h -rw-r--r-- root/root 3340 2026-09-30 14:46 ./usr/include/scitbx/math/parabolic_cylinder_d.h -rw-r--r-- root/root 2396 2026-09-30 14:46 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3883 2026-09-30 14:46 ./usr/include/scitbx/math/utils.h -rw-r--r-- root/root 6517 2026-09-30 14:46 ./usr/include/scitbx/math/weighted_covariance.h -rw-r--r-- root/root 56695 2026-09-30 14:46 ./usr/include/scitbx/math/zernike.h -rw-r--r-- root/root 26688 2026-09-30 14:46 ./usr/include/scitbx/math/zernike_moments.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/scitbx/matrix/ -rw-r--r-- root/root 2132 2026-09-30 14:46 ./usr/include/scitbx/matrix/as_xyz.h -rw-r--r-- root/root 13164 2026-09-30 14:46 ./usr/include/scitbx/matrix/cholesky.h -rw-r--r-- root/root 291 2026-09-30 14:46 ./usr/include/scitbx/matrix/delta_tensors.h -rw-r--r-- root/root 905 2026-09-30 14:46 ./usr/include/scitbx/matrix/diagonal.h -rw-r--r-- root/root 11882 2026-09-30 14:46 ./usr/include/scitbx/matrix/eigensystem.h -rw-r--r-- root/root 7887 2026-09-30 14:46 ./usr/include/scitbx/matrix/givens.h -rw-r--r-- root/root 26266 2026-09-30 14:46 ./usr/include/scitbx/matrix/householder.h -rw-r--r-- root/root 3075 2026-09-30 14:46 ./usr/include/scitbx/matrix/inversion.h -rw-r--r-- root/root 3042 2026-09-30 14:46 ./usr/include/scitbx/matrix/lu_decomposition.h -rw-r--r-- root/root 4031 2026-09-30 14:46 ./usr/include/scitbx/matrix/matrix_vector_operations.h -rw-r--r-- root/root 7602 2026-09-30 14:46 ./usr/include/scitbx/matrix/move.h -rw-r--r-- root/root 5386 2026-09-30 14:46 ./usr/include/scitbx/matrix/multiply.h -rw-r--r-- root/root 1495 2026-09-30 14:46 ./usr/include/scitbx/matrix/norms.h -rw-r--r-- root/root 1801 2026-09-30 14:46 ./usr/include/scitbx/matrix/outer_product.h -rw-r--r-- root/root 9823 2026-09-30 14:46 ./usr/include/scitbx/matrix/packed.h -rw-r--r-- root/root 5862 2026-09-30 14:46 ./usr/include/scitbx/matrix/row_echelon.h -rw-r--r-- root/root 3188 2026-09-30 14:46 ./usr/include/scitbx/matrix/row_echelon_full_pivoting.h -rw-r--r-- root/root 4793 2026-09-30 14:46 ./usr/include/scitbx/matrix/row_echelon_full_pivoting_impl.h -rw-r--r-- root/root 1873 2026-09-30 14:46 ./usr/include/scitbx/matrix/row_echelon_full_pivoting_small.h -rw-r--r-- root/root 2316 2026-09-30 14:46 ./usr/include/scitbx/matrix/special_matrices.h -rw-r--r-- root/root 25064 2026-09-30 14:46 ./usr/include/scitbx/matrix/svd.h -rw-r--r-- root/root 4024 2026-09-30 14:46 ./usr/include/scitbx/matrix/symmetric_rank_1_update.h -rw-r--r-- root/root 5006 2026-09-30 14:46 ./usr/include/scitbx/matrix/tensor_rank_2.h -rw-r--r-- root/root 14705 2026-09-30 14:46 ./usr/include/scitbx/matrix/tensors.h -rw-r--r-- root/root 3577 2026-09-30 14:46 ./usr/include/scitbx/matrix/tests.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/matrix/tests/ -rw-r--r-- root/root 1477 2026-09-30 14:46 ./usr/include/scitbx/matrix/tests/utils.h -rw-r--r-- root/root 1465 2026-09-30 14:46 ./usr/include/scitbx/matrix/transpose_multiply.h -rw-r--r-- root/root 3603 2026-09-30 14:46 ./usr/include/scitbx/matrix/triangular_systems.h -rw-r--r-- root/root 583 2026-09-30 14:46 ./usr/include/scitbx/matrix/vector_operations.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/minpack/ -rw-r--r-- root/root 4322 2026-09-30 14:46 ./usr/include/scitbx/minpack/levenberg_marquardt.h -rw-r--r-- root/root 18187 2026-09-30 14:46 ./usr/include/scitbx/minpack/raw.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/misc/ -rw-r--r-- root/root 2968 2026-09-30 14:46 ./usr/include/scitbx/misc/file_utils.h -rw-r--r-- root/root 800 2026-09-30 14:46 ./usr/include/scitbx/misc/positive_getitem_index.h -rw-r--r-- root/root 2141 2026-09-30 14:46 ./usr/include/scitbx/misc/split_lines.h -rw-r--r-- root/root 1872 2026-09-30 14:46 ./usr/include/scitbx/numerical.h -rw-r--r-- root/root 1489 2026-09-30 14:46 ./usr/include/scitbx/r3_utils.hpp -rw-r--r-- root/root 9496 2026-09-30 14:46 ./usr/include/scitbx/random.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/random/ drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/random/boost_python/ -rw-r--r-- root/root 2634 2026-09-30 14:46 ./usr/include/scitbx/random/boost_python/random.h -rw-r--r-- root/root 5526 2026-09-30 14:46 ./usr/include/scitbx/random/mersenne_twister.h -rw-r--r-- root/root 1156 2026-09-30 14:46 ./usr/include/scitbx/random/variate_generator.h -rw-r--r-- root/root 7661 2026-09-30 14:46 ./usr/include/scitbx/random_legacy_boost_1_63.h -rw-r--r-- root/root 1788 2026-09-30 14:46 ./usr/include/scitbx/rational.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/rigid_body/ -rw-r--r-- root/root 1900 2026-09-30 14:46 ./usr/include/scitbx/rigid_body/array_packing.h -rw-r--r-- root/root 8601 2026-09-30 14:46 ./usr/include/scitbx/rigid_body/body_lib.h -rw-r--r-- root/root 827 2026-09-30 14:46 ./usr/include/scitbx/rigid_body/body_t.h -rw-r--r-- root/root 31206 2026-09-30 14:46 ./usr/include/scitbx/rigid_body/featherstone.h -rw-r--r-- root/root 18908 2026-09-30 14:46 ./usr/include/scitbx/rigid_body/joint_lib.h -rw-r--r-- root/root 2288 2026-09-30 14:46 ./usr/include/scitbx/rigid_body/joint_t.h -rw-r--r-- root/root 4430 2026-09-30 14:46 ./usr/include/scitbx/rigid_body/matrix_helpers.h -rw-r--r-- root/root 179 2026-09-30 14:46 ./usr/include/scitbx/rigid_body/namespace.h -rw-r--r-- root/root 4748 2026-09-30 14:46 ./usr/include/scitbx/rigid_body/spatial_lib.h -rw-r--r-- root/root 13152 2026-09-30 14:46 ./usr/include/scitbx/rigid_body/tardy.h -rw-r--r-- root/root 683 2026-09-30 14:46 ./usr/include/scitbx/rotr3.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/serialization/ -rw-r--r-- root/root 10056 2026-09-30 14:46 ./usr/include/scitbx/serialization/base_256.h -rw-r--r-- root/root 4719 2026-09-30 14:46 ./usr/include/scitbx/serialization/double_buffered.h -rw-r--r-- root/root 5427 2026-09-30 14:46 ./usr/include/scitbx/serialization/single_buffered.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/slatec/ -rw-r--r-- root/root 370 2026-09-30 14:46 ./usr/include/scitbx/slatec/lib_c.h -rw-r--r-- root/root 1354 2026-09-30 14:46 ./usr/include/scitbx/slatec/lib_cpp.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/sparse/ -rw-r--r-- root/root 1653 2026-09-30 14:46 ./usr/include/scitbx/sparse/approx_equal.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/sparse/boost_python/ -rw-r--r-- root/root 1063 2026-09-30 14:46 ./usr/include/scitbx/sparse/boost_python/vector.h -rw-r--r-- root/root 3021 2026-09-30 14:46 ./usr/include/scitbx/sparse/dfs.h -rw-r--r-- root/root 4091 2026-09-30 14:46 ./usr/include/scitbx/sparse/io.h -rw-r--r-- root/root 10007 2026-09-30 14:46 ./usr/include/scitbx/sparse/lu_factorization.h -rw-r--r-- root/root 17865 2026-09-30 14:46 ./usr/include/scitbx/sparse/matrix.h -rw-r--r-- root/root 2122 2026-09-30 14:46 ./usr/include/scitbx/sparse/operators.h -rw-r--r-- root/root 6837 2026-09-30 14:46 ./usr/include/scitbx/sparse/random.h -rw-r--r-- root/root 2541 2026-09-30 14:46 ./usr/include/scitbx/sparse/triangular.h -rw-r--r-- root/root 195 2026-09-30 14:46 ./usr/include/scitbx/sparse/util.h -rw-r--r-- root/root 22182 2026-09-30 14:46 ./usr/include/scitbx/sparse/vector.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/stl/ -rw-r--r-- root/root 1708 2026-09-30 14:46 ./usr/include/scitbx/stl/map_as_python_dict.h -rw-r--r-- root/root 283 2026-09-30 14:46 ./usr/include/scitbx/stl/map_fwd.h -rw-r--r-- root/root 8037 2026-09-30 14:46 ./usr/include/scitbx/stl/map_wrapper.h -rw-r--r-- root/root 2096 2026-09-30 14:46 ./usr/include/scitbx/stl/set_wrapper.h -rw-r--r-- root/root 1038 2026-09-30 14:46 ./usr/include/scitbx/stl/vector_as_python_list.h -rw-r--r-- root/root 306 2026-09-30 14:46 ./usr/include/scitbx/stl/vector_io.h -rw-r--r-- root/root 4019 2026-09-30 14:46 ./usr/include/scitbx/stl/vector_wrapper.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/suffixtree/ drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/suffixtree/boost_python/ -rw-r--r-- root/root 7204 2026-09-30 14:46 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-rw-r--r-- root/root 1432 2026-09-30 14:46 ./usr/include/scitbx/suffixtree/word.hpp -rw-r--r-- root/root 18201 2026-09-30 14:46 ./usr/include/scitbx/sym_mat2.h -rw-r--r-- root/root 22179 2026-09-30 14:46 ./usr/include/scitbx/sym_mat3.h -rw-r--r-- root/root 197 2026-09-30 14:46 ./usr/include/scitbx/type_holder.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/util/ -rw-r--r-- root/root 847 2026-09-30 14:46 ./usr/include/scitbx/util/cpu_timer.h -rw-r--r-- root/root 12686 2026-09-30 14:46 ./usr/include/scitbx/vec2.h -rw-r--r-- root/root 16941 2026-09-30 14:46 ./usr/include/scitbx/vec3.h -rw-r--r-- root/root 10207 2026-09-30 14:46 ./usr/include/scitbx/weighted_histogram.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/scitbx/wigner/ -rw-r--r-- root/root 5923 2026-09-30 14:46 ./usr/include/scitbx/wigner/wigner3j.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/smtbx/ drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/smtbx/ab_initio/ -rw-r--r-- root/root 1006 2026-09-30 14:46 ./usr/include/smtbx/ab_initio/density_modification.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/smtbx/boost_python/ -rw-r--r-- root/root 393 2026-10-05 19:33 ./usr/include/smtbx/boost_python/flex_fwd.h -rw-r--r-- root/root 2301 2026-09-30 14:46 ./usr/include/smtbx/error.h -rw-r--r-- root/root 476 2026-09-30 14:46 ./usr/include/smtbx/import_cctbx.h -rw-r--r-- root/root 152 2026-09-30 14:46 ./usr/include/smtbx/import_scitbx_af.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/smtbx/refinement/ drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/ -rw-r--r-- root/root 1732 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/affine.h -rw-r--r-- root/root 4433 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/direction.h -rw-r--r-- root/root 9783 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/geometrical_hydrogens.h -rw-r--r-- root/root 2539 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/occupancy.h -rw-r--r-- root/root 2394 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/proxy.h -rw-r--r-- root/root 31391 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/reparametrisation.h -rw-r--r-- root/root 3676 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/rigid.h -rw-r--r-- root/root 5965 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/same_group.h -rw-r--r-- root/root 1648 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/scaled_adp.h -rw-r--r-- root/root 3966 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/scatterer_parameters.h -rw-r--r-- root/root 3888 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/shared.h -rw-r--r-- root/root 4524 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/special_position.h -rw-r--r-- root/root 1137 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/symmetry_equivalent.h -rw-r--r-- root/root 1134 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/u_eq_dependent_u_iso.h -rw-r--r-- root/root 1015 2026-09-30 14:46 ./usr/include/smtbx/refinement/constraints/u_iso_dependent_u_iso.h -rw-r--r-- root/root 148 2026-09-30 14:46 ./usr/include/smtbx/refinement/import_cctbx_xray.h -rw-r--r-- root/root 20577 2026-09-30 14:46 ./usr/include/smtbx/refinement/least_squares.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/smtbx/refinement/restraints/ -rw-r--r-- root/root 5055 2026-09-30 14:46 ./usr/include/smtbx/refinement/restraints/origin_fixing.h -rw-r--r-- root/root 2566 2026-09-30 14:46 ./usr/include/smtbx/refinement/weighting_schemes.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/smtbx/structure_factors/ drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/smtbx/structure_factors/direct/ -rw-r--r-- root/root 52104 2026-09-30 14:46 ./usr/include/smtbx/structure_factors/direct/standard_xray.h -rw-r--r-- root/root 16076 2026-09-30 14:46 ./usr/include/smtbx/structure_factors/direct/table_based.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/include/spotfinder/ drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/spotfinder/applications/ -rw-r--r-- root/root 2023 2026-09-30 14:46 ./usr/include/spotfinder/applications/find_active_area.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/spotfinder/core_toolbox/ drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/spotfinder/core_toolbox/boost_python/ -rw-r--r-- root/root 3218 2026-09-30 14:46 ./usr/include/spotfinder/core_toolbox/boost_python/singlemask.h -rw-r--r-- root/root 4008 2026-09-30 14:46 ./usr/include/spotfinder/core_toolbox/distl.h -rw-r--r-- root/root 2509 2026-09-30 14:46 ./usr/include/spotfinder/core_toolbox/hough.h -rw-r--r-- root/root 15844 2026-09-30 14:46 ./usr/include/spotfinder/core_toolbox/libdistl.h -rw-r--r-- root/root 5293 2026-09-30 14:46 ./usr/include/spotfinder/core_toolbox/spot_shapes.h -rw-r--r-- root/root 276 2026-09-30 14:46 ./usr/include/spotfinder/core_toolbox/spot_types.h -rw-r--r-- root/root 4454 2026-09-30 14:46 ./usr/include/spotfinder/core_toolbox/spotfilter.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/spotfinder/dxtbx_toolbox/ -rw-r--r-- root/root 3504 2026-09-30 14:46 ./usr/include/spotfinder/dxtbx_toolbox/distl.h -rw-r--r-- root/root 837 2026-09-30 14:46 ./usr/include/spotfinder/dxtbx_toolbox/libdistl.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/tbxx/ -rw-r--r-- root/root 487 2026-09-30 14:46 ./usr/include/tbxx/alignment.h -rw-r--r-- root/root 1760 2026-09-30 14:46 ./usr/include/tbxx/error_utils.hpp -rw-r--r-- root/root 2811 2026-09-30 14:46 ./usr/include/tbxx/libc_backtrace.hpp -rw-r--r-- root/root 2857 2026-09-30 14:46 ./usr/include/tbxx/optional_copy.hpp -rw-r--r-- root/root 1493 2026-09-30 14:46 ./usr/include/tbxx/pretty_type_name.hpp -rw-r--r-- root/root 2124 2026-09-30 14:46 ./usr/include/tbxx/time_accu.hpp drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/xcif/ drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/xcif/include/ drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/xcif/include/xcif/ -rw-r--r-- root/root 6274 2026-09-30 14:46 ./usr/include/xcif/include/xcif/data_model.h -rw-r--r-- root/root 7555 2026-09-30 14:46 ./usr/include/xcif/include/xcif/mapped_file.h -rw-r--r-- root/root 1615 2026-09-30 14:46 ./usr/include/xcif/include/xcif/numeric.h -rw-r--r-- root/root 4012 2026-09-30 14:46 ./usr/include/xcif/include/xcif/string_view.h -rw-r--r-- root/root 3129 2026-09-30 14:46 ./usr/include/xcif/include/xcif/tokenizer.h drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/xcif/regression/ drwxr-xr-x root/root 0 2026-09-30 14:46 ./usr/include/xcif/regression/cpp/ -rw-r--r-- root/root 867 2026-09-30 14:46 ./usr/include/xcif/regression/cpp/test_utils.h drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/lib/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/lib/cctbx/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/lib/cctbx/python3.14/ lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/cctbx/python3.14/include -> ../../../include/cctbx drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/lib/cctbx/python3.15/ lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/cctbx/python3.15/include -> ../../../include/cctbx drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/ lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libann_adaptor.so -> libann_adaptor.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libasymmetric_map.so -> libasymmetric_map.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libcbf-private.so -> libcbf-private.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libccp4io.so -> libccp4io.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libcctbx.so -> libcctbx.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so -> libcctbx_sgtbx_asu.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so -> libdxtbxspotfinder.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so -> libiotbx_mtz.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so -> libiotbx_pdb.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so -> libiotbx_xplor.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so -> libmmtbx_masks.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so -> libmmtbx_tls.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libomptbx.so -> libomptbx.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/librstbx.so -> librstbx.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so -> libscitbx_boost_python.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so -> libscitbx_minpack.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so -> libscitbx_slatec.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so -> libsmtbx_refinement_constraints.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libspotfinder.so -> libspotfinder.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libxcif.so -> libxcif.so.0.0.1 drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/share/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/share/doc/libcctbx-dev/ -rw-r--r-- root/root 2349 2026-10-05 19:33 ./usr/share/doc/libcctbx-dev/changelog.Debian.gz -rw-r--r-- root/root 250 2026-10-05 19:33 ./usr/share/doc/libcctbx-dev/changelog.Debian.loong64.gz -rw-r--r-- root/root 5862 2026-09-30 14:46 ./usr/share/doc/libcctbx-dev/changelog.gz -rw-r--r-- root/root 38654 2026-03-07 14:36 ./usr/share/doc/libcctbx-dev/copyright libcctbx0-dbgsym_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb -------------------------------------------------------- new Debian package, version 2.0. size 9851976 bytes: control archive=1532 bytes. 1231 bytes, 12 lines control 2211 bytes, 21 lines md5sums Package: libcctbx0-dbgsym Source: cctbx (2026.9+ds2+~3.30.1+ds1-1) Version: 2026.9+ds2+~3.30.1+ds1-1+b2 Auto-Built-Package: debug-symbols Architecture: loong64 Maintainer: Debian Science Maintainers Installed-Size: 13708 Depends: libcctbx0 (= 2026.9+ds2+~3.30.1+ds1-1+b2) Section: debug Priority: optional Description: debug symbols for libcctbx0 Build-Ids: 0a527cc0727de870d7ce3862c2c03b2e8f7cc02c 1b8ef92d5860e63f40e22c9756002e126c57fa3d 227ea0e3feafa8a96524d67c0cc480340a56400e 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./usr/lib/debug/.build-id/d4/ -rw-r--r-- root/root 535736 2026-10-05 19:33 ./usr/lib/debug/.build-id/d4/b91b024a276321d739a09860031663255d5a85.debug drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/lib/debug/.build-id/d9/ -rw-r--r-- root/root 2603240 2026-10-05 19:33 ./usr/lib/debug/.build-id/d9/31d54d99026af07f3436a793f233e1a481c845.debug drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/lib/debug/.build-id/e6/ -rw-r--r-- root/root 120144 2026-10-05 19:33 ./usr/lib/debug/.build-id/e6/4f989ce2986d8f2136b9f0e345626c4a5af8e3.debug drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/lib/debug/.build-id/f0/ -rw-r--r-- root/root 304768 2026-10-05 19:33 ./usr/lib/debug/.build-id/f0/691ec4a39d6e11441607f5cf75049fa305815a.debug drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/lib/debug/.dwz/loongarch64-linux-gnu/ -rw-r--r-- root/root 345056 2026-10-05 19:33 ./usr/lib/debug/.dwz/loongarch64-linux-gnu/libcctbx0.debug drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/share/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/share/doc/ lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/share/doc/libcctbx0-dbgsym -> libcctbx0 libcctbx0_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb ------------------------------------------------- new Debian package, version 2.0. size 2240176 bytes: control archive=2620 bytes. 3085 bytes, 55 lines control 2068 bytes, 24 lines md5sums 1105 bytes, 20 lines shlibs 65 bytes, 2 lines triggers Package: libcctbx0 Source: cctbx (2026.9+ds2+~3.30.1+ds1-1) Version: 2026.9+ds2+~3.30.1+ds1-1+b2 Architecture: loong64 Maintainer: Debian Science Maintainers Installed-Size: 11971 Depends: libann-cctbx0 (>= 1.1.2+doc), libboost-python1.92.0 (>= 1.92.0), libboost-python1.92.0-py314, libc6 (>= 2.38), libcbf1t64 (>= 0.9.7+dfsg1-2~), libccp4c0t64 (>= 8.0.0), libgcc-s1 (>= 4.0), libstdc++6 (>= 13.1) Section: libs Priority: optional Homepage: https://github.com/cctbx/cctbx_project Description: Computational Crystallography Toolbox - runtime libraries Computational Crystallography Toolbox contains following modules: - annlib_adaptbx: - boost_adaptbx: wrappers for Boost functionality in CCTBX - cbflib_adaptbx: - ccp4io_adaptbx: - cctbx: Libraries for general crystallographic applications, useful for both small-molecule and macro-molecular crystallography. - cma_es: - crys3d: Modules for the display of molecules, electron density, and reciprocal space data. - dxtbx: The Diffraction Image Toolbox, a library for handling X-ray detector data of arbitrary complexity from a variety of standard formats. - fable: Fortran EMulation library for porting Fortran77 to C++. - gltbx: Python bindings for OpenGL - iotbx: Working with common crystallographic file formats. - libtbx: The build system common to all other modules. This includes a very thin wrapper around the SCons software construction tool. It also contains many useful frameworks and utilities to simplify application development, including tools for regression testing, parallelization across multiprocessor systems and managed clusters, and a flexible, modular configuration syntax called PHIL (Python Hierarchial Interface Language) used throughout the CCTBX. - mmtbx: Functionality specific to macromolecular crystallography. This includes all of the machinery required for setup of geometry restraints, bulk solvent correction and scaling, analysis of macromolecular diffraction data, calculation of weighted map coefficients, and most of the methods implemented in phenix.refine. The majority of infrastructure for the MolProbity validation server (and Phenix equivalent) is also located here. - omptbx: OpenMP interface. - rstbx: A reciprocal space toolbox to autoindex small molecule Bragg diffraction, given the reciprocal space vectors. - scitbx: General scientific calculations. his includes a family of high-level C++ array types, a fast Fourier transform library, and a C++ port of the popular L-BFGS quasi-Newton minimizer. - smtbx: Small-Molecule crystallography. - spotfinder: - tbxx: - wxtbx: wxPython controls used in the Phenix GUI and various utilities . This package provide the cctbx runtime libraries. drwxr-xr-x root/root 0 2026-10-05 19:33 ./ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/lib/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/ lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libann_adaptor.so.0 -> libann_adaptor.so.0.0.1 -rw-r--r-- root/root 68952 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libann_adaptor.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libasymmetric_map.so.0 -> libasymmetric_map.so.0.0.1 -rw-r--r-- root/root 535136 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libasymmetric_map.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libcbf-private.so.0 -> libcbf-private.so.0.0.1 -rw-r--r-- root/root 134776 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libcbf-private.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libccp4io.so.0 -> libccp4io.so.0.0.1 -rw-r--r-- root/root 67560 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libccp4io.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libcctbx.so.0 -> libcctbx.so.0.0.1 -rw-r--r-- root/root 2898080 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libcctbx.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so.0 -> libcctbx_sgtbx_asu.so.0.0.1 -rw-r--r-- root/root 3858296 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libcctbx_sgtbx_asu.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so.0 -> libdxtbxspotfinder.so.0.0.1 -rw-r--r-- root/root 268064 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libdxtbxspotfinder.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so.0 -> libiotbx_mtz.so.0.0.1 -rw-r--r-- root/root 334984 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libiotbx_mtz.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so.0 -> libiotbx_pdb.so.0.0.1 -rw-r--r-- root/root 1587568 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libiotbx_pdb.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so.0 -> libiotbx_xplor.so.0.0.1 -rw-r--r-- root/root 135256 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libiotbx_xplor.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so.0 -> libmmtbx_masks.so.0.0.1 -rw-r--r-- root/root 402184 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libmmtbx_masks.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so.0 -> libmmtbx_tls.so.0.0.1 -rw-r--r-- root/root 134728 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libmmtbx_tls.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libomptbx.so.0 -> libomptbx.so.0.0.1 -rw-r--r-- root/root 67672 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libomptbx.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/librstbx.so.0 -> librstbx.so.0.0.1 -rw-r--r-- root/root 201528 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/librstbx.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0 -> libscitbx_boost_python.so.0.0.1 -rw-r--r-- root/root 68472 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libscitbx_boost_python.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so.0 -> libscitbx_minpack.so.0.0.1 -rw-r--r-- root/root 68104 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libscitbx_minpack.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so.0 -> libscitbx_slatec.so.0.0.1 -rw-r--r-- root/root 67616 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libscitbx_slatec.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so.0 -> libsmtbx_refinement_constraints.so.0.0.1 -rw-r--r-- root/root 663360 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libsmtbx_refinement_constraints.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libspotfinder.so.0 -> libspotfinder.so.0.0.1 -rw-r--r-- root/root 469064 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libspotfinder.so.0.0.1 lrwxrwxrwx root/root 0 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libxcif.so.0 -> libxcif.so.0.0.1 -rw-r--r-- root/root 135600 2026-10-05 19:33 ./usr/lib/loongarch64-linux-gnu/libxcif.so.0.0.1 drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/share/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/share/doc/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/share/doc/libcctbx0/ -rw-r--r-- root/root 2348 2026-10-05 19:33 ./usr/share/doc/libcctbx0/changelog.Debian.gz -rw-r--r-- root/root 250 2026-10-05 19:33 ./usr/share/doc/libcctbx0/changelog.Debian.loong64.gz -rw-r--r-- root/root 5862 2026-09-30 14:46 ./usr/share/doc/libcctbx0/changelog.gz -rw-r--r-- root/root 38654 2026-03-07 14:36 ./usr/share/doc/libcctbx0/copyright python3-cctbx-dbgsym_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb ------------------------------------------------------------ new Debian package, version 2.0. size 286321896 bytes: control archive=17200 bytes. 16660 bytes, 12 lines control 42071 bytes, 397 lines md5sums Package: python3-cctbx-dbgsym Source: cctbx (2026.9+ds2+~3.30.1+ds1-1) Version: 2026.9+ds2+~3.30.1+ds1-1+b2 Auto-Built-Package: debug-symbols Architecture: loong64 Maintainer: Debian Science Maintainers Installed-Size: 552922 Depends: python3-cctbx (= 2026.9+ds2+~3.30.1+ds1-1+b2) Section: debug Priority: optional Description: debug symbols for python3-cctbx Build-Ids: 005b0b531c506b6824a0094b0c86f4554c79a6c0 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./usr/share/doc/python3-cctbx-dbgsym -> python3-cctbx python3-cctbx_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb ----------------------------------------------------- new Debian package, version 2.0. size 128135524 bytes: control archive=136592 bytes. 3924 bytes, 55 lines control 547921 bytes, 5540 lines md5sums 285 bytes, 12 lines * postinst #!/bin/sh 423 bytes, 12 lines * prerm #!/bin/sh Package: python3-cctbx Source: cctbx (2026.9+ds2+~3.30.1+ds1-1) Version: 2026.9+ds2+~3.30.1+ds1-1+b2 Architecture: loong64 Maintainer: Debian Science Maintainers Installed-Size: 601596 Depends: ca-certificates, libcctbx-dev (= 2026.9+ds2+~3.30.1+ds1-1+b2), libcctbx0 (= 2026.9+ds2+~3.30.1+ds1-1+b2), python3-legacy-cgi, python3-pycbf (>= 0.9.7+dfsg1-2~), tcsh | csh | c-shell, python3 (<< 3.16), python3 (>= 3.14~), python3-h5py (>= 3), python3-hdf5plugin, python3-matplotlib, python3-mrcfile, python3-natsort, python3-numpy, python3-numpy2-abi0 | python3-numpy-abi9, python3-nxmx, python3-ordered-set, python3-pil, python3-pint, python3-procrunner, python3-pymol, python3-requests, python3-scipy, python3-six, python3-tqdm, python3-wxgtk4.0, python3:any, libantlr3c-3.4-0 | libantlr3c-antlrdbg-3.4-0, libboost-numpy1.92.0 (>= 1.92.0), libboost-numpy1.92.0-py314, libboost-numpy1.92.0-py315, libboost-python1.92.0 (>= 1.92.0), libboost-python1.92.0-py314, libboost-python1.92.0-py315, libboost-thread1.92.0 (>= 1.92.0), libboost-timer1.92.0 (>= 1.92.0), libc6 (>= 2.38), libcbf1t64 (>= 0.9.7+dfsg1-2~), libccp4c0t64 (>= 8.0.0), libgcc-s1 (>= 4.5), libgl1, libglu1-mesa | libglu1, libhdf5-320 (>= 2.1.0), libstdc++6 (>= 14) Section: python Priority: optional Homepage: https://github.com/cctbx/cctbx_project Description: Python Toolbox for crystallography Computational Crystallography Toolbox contains following modules: - annlib_adaptbx: - boost_adaptbx: wrappers for Boost functionality in CCTBX - cbflib_adaptbx: - ccp4io_adaptbx: - cctbx: Libraries for general crystallographic applications, useful for both small-molecule and macro-molecular crystallography. - cma_es: - crys3d: Modules for the display of molecules, electron density, and reciprocal space data. - dxtbx: The Diffraction Image Toolbox, a library for handling X-ray detector data of arbitrary complexity from a variety of standard formats. - fable: Fortran EMulation library for porting Fortran77 to C++. - gltbx: Python bindings for OpenGL - iotbx: Working with common crystallographic file formats. - libtbx: The build system common to all other modules. This includes a very thin wrapper around the SCons software construction tool. It also contains many useful frameworks and utilities to simplify application development, including tools for regression testing, parallelization across multiprocessor systems and managed clusters, and a flexible, modular configuration syntax called PHIL (Python Hierarchial Interface Language) used throughout the CCTBX. - mmtbx: Functionality specific to macromolecular crystallography. This includes all of the machinery required for setup of geometry restraints, bulk solvent correction and scaling, analysis of macromolecular diffraction data, calculation of weighted map coefficients, and most of the methods implemented in phenix.refine. The majority of infrastructure for the MolProbity validation server (and Phenix equivalent) is also located here. - omptbx: OpenMP interface. - rstbx: A reciprocal space toolbox to autoindex small molecule Bragg diffraction, given the reciprocal space vectors. - scitbx: General scientific calculations. his includes a family of high-level C++ array types, a fast Fourier transform library, and a C++ port of the popular L-BFGS quasi-Newton minimizer. - smtbx: Small-Molecule crystallography. - spotfinder: - tbxx: - wxtbx: wxPython controls used in the Phenix GUI and various utilities . This package provide a selected collection of python modules from the cctbx project. drwxr-xr-x root/root 0 2026-10-05 19:33 ./ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/bin/ -rwxr-xr-x root/root 3202 2026-10-05 19:33 ./usr/bin/annlib.python -rwxr-xr-x root/root 3745 2026-10-05 19:33 ./usr/bin/annlib.show_build_path -rwxr-xr-x root/root 3745 2026-10-05 19:33 ./usr/bin/annlib.show_dist_paths -rwxr-xr-x root/root 3717 2026-10-05 19:33 ./usr/bin/boost.gcd -rwxr-xr-x root/root 3717 2026-10-05 19:33 ./usr/bin/boost.lcm -rwxr-xr-x root/root 3201 2026-10-05 19:33 ./usr/bin/boost.python -rwxr-xr-x root/root 3744 2026-10-05 19:33 ./usr/bin/boost.show_build_path -rwxr-xr-x root/root 3744 2026-10-05 19:33 ./usr/bin/boost.show_dist_paths -rwxr-xr-x root/root 3769 2026-10-05 19:33 ./usr/bin/boost_adaptbx.divide_by_zero -rwxr-xr-x root/root 3773 2026-10-05 19:33 ./usr/bin/boost_adaptbx.double_overflow -rwxr-xr-x root/root 3741 2026-10-05 19:33 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./usr/bin/mmtbx.rama_z -rwxr-xr-x root/root 3761 2026-10-05 19:33 ./usr/bin/mmtbx.rebuild_cablam_cache -rwxr-xr-x root/root 3769 2026-10-05 19:33 ./usr/bin/mmtbx.rebuild_rotarama_cache -rwxr-xr-x root/root 3709 2026-10-05 19:33 ./usr/bin/mmtbx.reduce2 -rwxr-xr-x root/root 3777 2026-10-05 19:33 ./usr/bin/mmtbx.reduce_cryoem_resolution -rwxr-xr-x root/root 3797 2026-10-05 19:33 ./usr/bin/mmtbx.refine_anomalous_substructure -rwxr-xr-x root/root 3709 2026-10-05 19:33 ./usr/bin/mmtbx.ribbons -rwxr-xr-x root/root 3741 2026-10-05 19:33 ./usr/bin/mmtbx.rigid_bond_test -rwxr-xr-x root/root 3760 2026-10-05 19:33 ./usr/bin/mmtbx.ringer -rwxr-xr-x root/root 3757 2026-10-05 19:33 ./usr/bin/mmtbx.search_pdb_symmetry -rwxr-xr-x root/root 3785 2026-10-05 19:33 ./usr/bin/mmtbx.select_best_starting_model -rwxr-xr-x root/root 3744 2026-10-05 19:33 ./usr/bin/mmtbx.show_build_path -rwxr-xr-x root/root 3744 2026-10-05 19:33 ./usr/bin/mmtbx.show_dist_paths -rwxr-xr-x root/root 3773 2026-10-05 19:33 ./usr/bin/mmtbx.show_r_factors_by_shell -rwxr-xr-x root/root 3741 2026-10-05 19:33 ./usr/bin/mmtbx.ss_idealization -rwxr-xr-x root/root 3701 2026-10-05 19:33 ./usr/bin/mmtbx.super -rwxr-xr-x root/root 3717 2026-10-05 19:33 ./usr/bin/mmtbx.superpose -rwxr-xr-x root/root 3717 2026-10-05 19:33 ./usr/bin/mmtbx.table_one -rwxr-xr-x root/root 3760 2026-10-05 19:33 ./usr/bin/mmtbx.undowser2_validation -rwxr-xr-x root/root 3745 2026-10-05 19:33 ./usr/bin/mmtbx.validate_ligands -rwxr-xr-x root/root 3753 2026-10-05 19:33 ./usr/bin/mmtbx.validation_summary -rwxr-xr-x root/root 3757 2026-10-05 19:33 ./usr/bin/mmtbx.verify_mon_lib_data -rwxr-xr-x root/root 3769 2026-10-05 19:33 ./usr/bin/mmtbx.where_is_that_cif_file -rwxr-xr-x root/root 3709 2026-10-05 19:33 ./usr/bin/mmtbx.xtriage -rwxr-xr-x root/root 3745 2026-10-05 19:33 ./usr/bin/mmtbx.xtriage_gui -rwxr-xr-x root/root 3766 2026-10-05 19:33 ./usr/bin/molprobity.barbed_wire_analysis -rwxr-xr-x root/root 3742 2026-10-05 19:33 ./usr/bin/molprobity.cablam -rwxr-xr-x root/root 3750 2026-10-05 19:33 ./usr/bin/molprobity.cbetadev -rwxr-xr-x root/root 3786 2026-10-05 19:33 ./usr/bin/molprobity.chiral_validation -rwxr-xr-x root/root 3758 2026-10-05 19:33 ./usr/bin/molprobity.clashscore -rwxr-xr-x root/root 3762 2026-10-05 19:33 ./usr/bin/molprobity.clashscore2 -rwxr-xr-x root/root 3718 2026-10-05 19:33 ./usr/bin/molprobity.kinemage -rwxr-xr-x root/root 3758 2026-10-05 19:33 ./usr/bin/molprobity.molprobity -rwxr-xr-x root/root 3754 2026-10-05 19:33 ./usr/bin/molprobity.mp_validate_bonds -rwxr-xr-x root/root 3722 2026-10-05 19:33 ./usr/bin/molprobity.omegalyze -rwxr-xr-x root/root 3754 2026-10-05 19:33 ./usr/bin/molprobity.probescore_ligand -rwxr-xr-x root/root 3750 2026-10-05 19:33 ./usr/bin/molprobity.ramalyze -rwxr-xr-x root/root 3734 2026-10-05 19:33 ./usr/bin/molprobity.rna_validate -rwxr-xr-x root/root 3758 2026-10-05 19:33 ./usr/bin/molprobity.rna_validate_bonds -rwxr-xr-x root/root 3766 2026-10-05 19:33 ./usr/bin/molprobity.rna_validate_puckers -rwxr-xr-x root/root 3762 2026-10-05 19:33 ./usr/bin/molprobity.rna_validate_suites -rwxr-xr-x root/root 3750 2026-10-05 19:33 ./usr/bin/molprobity.rotalyze -rwxr-xr-x root/root 3722 2026-10-05 19:33 ./usr/bin/molprobity.suitename -rwxr-xr-x root/root 3738 2026-10-05 19:33 ./usr/bin/molprobity.suitename_old -rwxr-xr-x root/root 3765 2026-10-05 19:33 ./usr/bin/molprobity.undowser2_validation -rwxr-xr-x root/root 3761 2026-10-05 19:33 ./usr/bin/molprobity.undowser_validation -rwxr-xr-x root/root 3202 2026-10-05 19:33 ./usr/bin/omptbx.python -rwxr-xr-x root/root 3745 2026-10-05 19:33 ./usr/bin/omptbx.show_build_path -rwxr-xr-x root/root 3745 2026-10-05 19:33 ./usr/bin/omptbx.show_dist_paths -rwxr-xr-x root/root 3724 2026-10-05 19:33 ./usr/bin/phasertng.HKLviewer -rwxr-xr-x root/root 3713 2026-10-05 19:33 ./usr/bin/phenix.HKLinfo -rwxr-xr-x root/root 3721 2026-10-05 19:33 ./usr/bin/phenix.HKLviewer -rwxr-xr-x root/root 3738 2026-10-05 19:33 ./usr/bin/phenix.TAAM_minus_IAM -rwxr-xr-x root/root 3702 2026-10-05 19:33 ./usr/bin/phenix.angle -rwxr-xr-x root/root 3730 2026-10-05 19:33 ./usr/bin/phenix.auto_sharpen -rwxr-xr-x root/root 3762 2026-10-05 19:33 ./usr/bin/phenix.barbed_wire_analysis -rwxr-xr-x root/root 3738 2026-10-05 19:33 ./usr/bin/phenix.cablam -rwxr-xr-x root/root 3758 2026-10-05 19:33 ./usr/bin/phenix.cablam_idealization -rwxr-xr-x root/root 3746 2026-10-05 19:33 ./usr/bin/phenix.cbetadev -rwxr-xr-x root/root 3710 2026-10-05 19:33 ./usr/bin/phenix.cc_star -rwxr-xr-x root/root 3782 2026-10-05 19:33 ./usr/bin/phenix.chiral_validation -rwxr-xr-x root/root 3722 2026-10-05 19:33 ./usr/bin/phenix.cif_as_mtz -rwxr-xr-x root/root 3722 2026-10-05 19:33 ./usr/bin/phenix.cif_as_pdb -rwxr-xr-x root/root 3754 2026-10-05 19:33 ./usr/bin/phenix.clashscore -rwxr-xr-x root/root 3758 2026-10-05 19:33 ./usr/bin/phenix.clashscore2 -rwxr-xr-x root/root 3722 2026-10-05 19:33 ./usr/bin/phenix.cns_as_mtz -rwxr-xr-x root/root 3718 2026-10-05 19:33 ./usr/bin/phenix.comparama -rwxr-xr-x root/root 3816 2026-10-05 19:33 ./usr/bin/phenix.compare_datasets -rwxr-xr-x root/root 3722 2026-10-05 19:33 ./usr/bin/phenix.csv_as_mtz -rwxr-xr-x root/root 3784 2026-10-05 19:33 ./usr/bin/phenix.data_viewer -rwxr-xr-x root/root 3774 2026-10-05 19:33 ./usr/bin/phenix.development.next_gen_atom_typing -rwxr-xr-x root/root 3775 2026-10-05 19:33 ./usr/bin/phenix.development.the_run_down -rwxr-xr-x root/root 3765 2026-10-05 19:33 ./usr/bin/phenix.development.valence_simple -rwxr-xr-x root/root 3726 2026-10-05 19:33 ./usr/bin/phenix.development.xtrapol8 -rwxr-xr-x root/root 3710 2026-10-05 19:33 ./usr/bin/phenix.diffuse -rwxr-xr-x root/root 3714 2026-10-05 19:33 ./usr/bin/phenix.dynamics -rwxr-xr-x root/root 3698 2026-10-05 19:33 ./usr/bin/phenix.emma -rwxr-xr-x root/root 3771 2026-10-05 19:33 ./usr/bin/phenix.emringer -rwxr-xr-x root/root 3805 2026-10-05 19:33 ./usr/bin/phenix.example_viewer -rwxr-xr-x root/root 3774 2026-10-05 19:33 ./usr/bin/phenix.explore_metric_symmetry -rwxr-xr-x root/root 3698 2026-10-05 19:33 ./usr/bin/phenix.f000 -rwxr-xr-x root/root 3742 2026-10-05 19:33 ./usr/bin/phenix.fab_elbow_angle -rwxr-xr-x root/root 3722 2026-10-05 19:33 ./usr/bin/phenix.fake_f_obs -rwxr-xr-x root/root 3747 2026-10-05 19:33 ./usr/bin/phenix.feature_enhanced_map -rwxr-xr-x root/root 3730 2026-10-05 19:33 ./usr/bin/phenix.fem -rwxr-xr-x root/root 3718 2026-10-05 19:33 ./usr/bin/phenix.fetch_pdb -rwxr-xr-x root/root 3706 2026-10-05 19:33 ./usr/bin/phenix.fft -rwxr-xr-x root/root 3746 2026-10-05 19:33 ./usr/bin/phenix.find_peaks_holes -rwxr-xr-x root/root 3778 2026-10-05 19:33 ./usr/bin/phenix.find_reticular_twin_laws -rwxr-xr-x root/root 3742 2026-10-05 19:33 ./usr/bin/phenix.find_tls_groups -rwxr-xr-x root/root 3706 2026-10-05 19:33 ./usr/bin/phenix.fmodel -rwxr-xr-x root/root 3758 2026-10-05 19:33 ./usr/bin/phenix.fobs_minus_fobs_map -rwxr-xr-x root/root 3750 2026-10-05 19:33 ./usr/bin/phenix.form_factor_query -rwxr-xr-x root/root 3734 2026-10-05 19:33 ./usr/bin/phenix.french_wilson -rwxr-xr-x root/root 3766 2026-10-05 19:33 ./usr/bin/phenix.geometry_minimization -rwxr-xr-x root/root 3730 2026-10-05 19:33 ./usr/bin/phenix.grow_density -rwxr-xr-x root/root 3702 2026-10-05 19:33 ./usr/bin/phenix.hbond -rwxr-xr-x root/root 3798 2026-10-05 19:33 ./usr/bin/phenix.helix_sheet_recs_as_pdb_files -rwxr-xr-x root/root 3818 2026-10-05 19:33 ./usr/bin/phenix.holton_geometry_validation -rwxr-xr-x root/root 3779 2026-10-05 19:33 ./usr/bin/phenix.image_viewer -rwxr-xr-x root/root 3714 2026-10-05 19:33 ./usr/bin/phenix.kinemage -rwxr-xr-x root/root 3710 2026-10-05 19:33 ./usr/bin/phenix.map_box -rwxr-xr-x root/root 3738 2026-10-05 19:33 ./usr/bin/phenix.map_comparison -rwxr-xr-x root/root 3770 2026-10-05 19:33 ./usr/bin/phenix.map_to_model_histogram -rwxr-xr-x root/root 3778 2026-10-05 19:33 ./usr/bin/phenix.map_to_structure_factors -rwxr-xr-x root/root 3698 2026-10-05 19:33 ./usr/bin/phenix.maps -rwxr-xr-x root/root 3698 2026-10-05 19:33 ./usr/bin/phenix.mask -rwxr-xr-x root/root 3758 2026-10-05 19:33 ./usr/bin/phenix.maximum_entropy_map -rwxr-xr-x root/root 3754 2026-10-05 19:33 ./usr/bin/phenix.merging_statistics -rwxr-xr-x root/root 3754 2026-10-05 19:33 ./usr/bin/phenix.model_idealization -rwxr-xr-x root/root 3718 2026-10-05 19:33 ./usr/bin/phenix.model_map -rwxr-xr-x root/root 3766 2026-10-05 19:33 ./usr/bin/phenix.model_model_distances -rwxr-xr-x root/root 3730 2026-10-05 19:33 ./usr/bin/phenix.model_vs_map -rwxr-xr-x root/root 3750 2026-10-05 19:33 ./usr/bin/phenix.model_vs_sequence -rwxr-xr-x root/root 3746 2026-10-05 19:33 ./usr/bin/phenix.models_as_chains -rwxr-xr-x root/root 3754 2026-10-05 19:33 ./usr/bin/phenix.molprobity -rwxr-xr-x root/root 3750 2026-10-05 19:33 ./usr/bin/phenix.mp_validate_bonds -rwxr-xr-x root/root 3714 2026-10-05 19:33 ./usr/bin/phenix.mtz.dump -rwxr-xr-x root/root 3710 2026-10-05 19:33 ./usr/bin/phenix.mtz2map -rwxr-xr-x root/root 3722 2026-10-05 19:33 ./usr/bin/phenix.mtz_as_cif -rwxr-xr-x root/root 3718 2026-10-05 19:33 ./usr/bin/phenix.omegalyze -rwxr-xr-x root/root 3754 2026-10-05 19:33 ./usr/bin/phenix.pdb.b_factor_stats -rwxr-xr-x root/root 3766 2026-10-05 19:33 ./usr/bin/phenix.pdb.biomt_reconstruction -rwxr-xr-x root/root 3734 2026-10-05 19:33 ./usr/bin/phenix.pdb.hierarchy -rwxr-xr-x root/root 3766 2026-10-05 19:33 ./usr/bin/phenix.pdb.mtrix_reconstruction -rwxr-xr-x root/root 3722 2026-10-05 19:33 ./usr/bin/phenix.pdb_as_cif -rwxr-xr-x root/root 3754 2026-10-05 19:33 ./usr/bin/phenix.pdb_atom_selection -rwxr-xr-x root/root 3754 2026-10-05 19:33 ./usr/bin/phenix.pdb_cif_conversion -rwxr-xr-x root/root 3789 2026-10-05 19:33 ./usr/bin/phenix.pdb_editor -rwxr-xr-x root/root 3754 2026-10-05 19:33 ./usr/bin/phenix.pdb_interpretation -rwxr-xr-x root/root 3714 2026-10-05 19:33 ./usr/bin/phenix.pdbtools -rwxr-xr-x root/root 3710 2026-10-05 19:33 ./usr/bin/phenix.perigee -rwxr-xr-x root/root 3706 2026-10-05 19:33 ./usr/bin/phenix.polder -rwxr-xr-x root/root 3774 2026-10-05 19:33 ./usr/bin/phenix.process_predicted_model -rwxr-xr-x root/root 3758 2026-10-05 19:33 ./usr/bin/phenix.r_factor_statistics -rwxr-xr-x root/root 3706 2026-10-05 19:33 ./usr/bin/phenix.rama_z -rwxr-xr-x root/root 3746 2026-10-05 19:33 ./usr/bin/phenix.ramalyze -rwxr-xr-x root/root 3738 2026-10-05 19:33 ./usr/bin/phenix.rank_scale_map -rwxr-xr-x root/root 3770 2026-10-05 19:33 ./usr/bin/phenix.real_space_correlation -rwxr-xr-x root/root 3758 2026-10-05 19:33 ./usr/bin/phenix.real_space_diff_map -rwxr-xr-x root/root 3774 2026-10-05 19:33 ./usr/bin/phenix.reciprocal_space_arrays -rwxr-xr-x root/root 3778 2026-10-05 19:33 ./usr/bin/phenix.reduce_cryoem_resolution -rwxr-xr-x root/root 3782 2026-10-05 19:33 ./usr/bin/phenix.reflection_file_converter -rwxr-xr-x root/root 3766 2026-10-05 19:33 ./usr/bin/phenix.reflection_statistics -rwxr-xr-x root/root 3710 2026-10-05 19:33 ./usr/bin/phenix.reindex -rwxr-xr-x root/root 3742 2026-10-05 19:33 ./usr/bin/phenix.remove_outliers -rwxr-xr-x root/root 3752 2026-10-05 19:33 ./usr/bin/phenix.resolution -rwxr-xr-x root/root 3730 2026-10-05 19:33 ./usr/bin/phenix.rna_validate -rwxr-xr-x root/root 3754 2026-10-05 19:33 ./usr/bin/phenix.rna_validate_bonds -rwxr-xr-x root/root 3762 2026-10-05 19:33 ./usr/bin/phenix.rna_validate_puckers -rwxr-xr-x root/root 3758 2026-10-05 19:33 ./usr/bin/phenix.rna_validate_suites -rwxr-xr-x root/root 3746 2026-10-05 19:33 ./usr/bin/phenix.rotalyze -rwxr-xr-x root/root 3802 2026-10-05 19:33 ./usr/bin/phenix.secondary_structure_restraints -rwxr-xr-x root/root 3802 2026-10-05 19:33 ./usr/bin/phenix.secondary_structure_validation -rwxr-xr-x root/root 3766 2026-10-05 19:33 ./usr/bin/phenix.segment_and_split_map -rwxr-xr-x root/root 3698 2026-10-05 19:33 ./usr/bin/phenix.sisa -rwxr-xr-x root/root 3730 2026-10-05 19:33 ./usr/bin/phenix.sort_hetatms -rwxr-xr-x root/root 3718 2026-10-05 19:33 ./usr/bin/phenix.suitename -rwxr-xr-x root/root 3734 2026-10-05 19:33 ./usr/bin/phenix.suitename_old -rwxr-xr-x root/root 3694 2026-10-05 19:33 ./usr/bin/phenix.tls -rwxr-xr-x root/root 3730 2026-10-05 19:33 ./usr/bin/phenix.tls_analysis -rwxr-xr-x root/root 3722 2026-10-05 19:33 ./usr/bin/phenix.tls_as_xyz -rwxr-xr-x root/root 3761 2026-10-05 19:33 ./usr/bin/phenix.undowser2_validation -rwxr-xr-x root/root 3757 2026-10-05 19:33 ./usr/bin/phenix.undowser_validation -rwxr-xr-x root/root 3750 2026-10-05 19:33 ./usr/bin/phenix.unique_with_biomt -rwxr-xr-x root/root 3743 2026-10-05 19:33 ./usr/bin/phenix.validate_H -rwxr-xr-x root/root 3746 2026-10-05 19:33 ./usr/bin/phenix.validate_ligands -rwxr-xr-x root/root 3706 2026-10-05 19:33 ./usr/bin/phenix.xmanip -rwxr-xr-x root/root 3710 2026-10-05 19:33 ./usr/bin/phenix.xtriage -rwxr-xr-x root/root 3756 2026-10-05 19:33 ./usr/bin/rstbx.index -rwxr-xr-x root/root 3201 2026-10-05 19:33 ./usr/bin/rstbx.python -rwxr-xr-x root/root 3744 2026-10-05 19:33 ./usr/bin/rstbx.show_build_path -rwxr-xr-x root/root 3744 2026-10-05 19:33 ./usr/bin/rstbx.show_dist_paths -rwxr-xr-x root/root 3733 2026-10-05 19:33 ./usr/bin/rstbx.simage.create -rwxr-xr-x root/root 3844 2026-10-05 19:33 ./usr/bin/rstbx.simage.explore_completeness -rwxr-xr-x root/root 3733 2026-10-05 19:33 ./usr/bin/rstbx.simage.solver -rwxr-xr-x root/root 3804 2026-10-05 19:33 ./usr/bin/rstbx.simage.wx_display -rwxr-xr-x root/root 3719 2026-10-05 19:33 ./usr/bin/samosa.join -rwxr-xr-x root/root 3723 2026-10-05 19:33 ./usr/bin/samosa.scale -rwxr-xr-x root/root 3765 2026-10-05 19:33 ./usr/bin/scitbx.apply_tapenade_hints -rwxr-xr-x root/root 3749 2026-10-05 19:33 ./usr/bin/scitbx.generate_error_h -rwxr-xr-x root/root 3721 2026-10-05 19:33 ./usr/bin/scitbx.histogram -rwxr-xr-x root/root 3202 2026-10-05 19:33 ./usr/bin/scitbx.python -rwxr-xr-x root/root 3745 2026-10-05 19:33 ./usr/bin/scitbx.show_build_path -rwxr-xr-x root/root 3745 2026-10-05 19:33 ./usr/bin/scitbx.show_dist_paths -rwxr-xr-x root/root 3741 2026-10-05 19:33 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./usr/share/doc/python3-cctbx/changelog.Debian.gz -rw-r--r-- root/root 250 2026-10-05 19:33 ./usr/share/doc/python3-cctbx/changelog.Debian.loong64.gz -rw-r--r-- root/root 5862 2026-09-30 14:46 ./usr/share/doc/python3-cctbx/changelog.gz -rw-r--r-- root/root 38654 2026-03-07 14:36 ./usr/share/doc/python3-cctbx/copyright drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/share/lintian/ drwxr-xr-x root/root 0 2026-10-05 19:33 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 1 2026-03-07 14:36 ./usr/share/lintian/overrides/python3-cctbx +------------------------------------------------------------------------------+ | Post Build Fri, 06 Nov 2026 06:32:29 +0000 | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup Fri, 06 Nov 2026 06:32:29 +0000 | +------------------------------------------------------------------------------+ Purging /build/reproducible-path Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary Fri, 06 Nov 2026 06:32:43 +0000 | +------------------------------------------------------------------------------+ Build Architecture: loong64 Build Type: any Build-Space: 15787368 Build-Time: 2657 Distribution: unstable Host Architecture: loong64 Install-Time: 6 Job: /srv/rebuilderd/tmp/rebuilderd1gR4oS/inputs/cctbx_2026.9+ds2+~3.30.1+ds1-1.dsc Machine Architecture: loong64 Package: cctbx Package-Time: 2688 Source-Version: 2026.9+ds2+~3.30.1+ds1-1 Space: 15787368 Status: successful Version: 2026.9+ds2+~3.30.1+ds1-1+b2 -------------------------------------------------------------------------------- Finished at 2026-11-06T06:32:20Z Build needed 00:44:48, 15787368k disk space build artifacts stored in /srv/rebuilderd/tmp/rebuilderd1gR4oS/out checking libcctbx-dev_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb: size... sha1... md5... sha256... all OK checking libcctbx0-dbgsym_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb: size... sha256... md5... sha1... all OK checking libcctbx0_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb: size... sha256... md5... sha1... all OK checking python3-cctbx-dbgsym_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb: size... sha1... md5... sha256... all OK checking python3-cctbx_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb: size differs for python3-cctbx_2026.9+ds2+~3.30.1+ds1-1+b2_loong64.deb